Query psy10859
Match_columns 224
No_of_seqs 134 out of 1393
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 20:15:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07394 MPP_Vps29 Homo sapiens 100.0 2.1E-33 4.4E-38 210.0 23.9 178 2-221 1-178 (178)
2 KOG3325|consensus 100.0 7.7E-30 1.7E-34 176.6 20.6 182 1-224 1-183 (183)
3 TIGR00040 yfcE phosphoesterase 100.0 2.7E-28 5.9E-33 179.8 18.7 156 1-204 1-157 (158)
4 COG0622 Predicted phosphoester 100.0 6.5E-28 1.4E-32 177.5 19.2 168 1-214 2-170 (172)
5 PRK09453 phosphodiesterase; Pr 99.9 4.7E-26 1E-30 171.5 18.0 162 1-214 1-175 (182)
6 PF12850 Metallophos_2: Calcin 99.9 2.3E-26 5E-31 168.9 10.9 155 1-200 1-156 (156)
7 cd00841 MPP_YfcE Escherichia c 99.9 3.1E-25 6.7E-30 163.0 15.8 154 2-206 1-154 (155)
8 PRK11148 cyclic 3',5'-adenosin 99.9 5.2E-24 1.1E-28 170.4 22.1 207 1-216 15-268 (275)
9 cd07388 MPP_Tt1561 Thermus the 99.9 1.3E-24 2.9E-29 167.0 16.4 182 1-202 5-221 (224)
10 cd07402 MPP_GpdQ Enterobacter 99.9 6.2E-24 1.3E-28 166.9 18.0 189 2-199 1-237 (240)
11 cd07395 MPP_CSTP1 Homo sapiens 99.9 5.8E-23 1.2E-27 163.4 21.1 198 2-209 6-262 (262)
12 COG2129 Predicted phosphoester 99.9 7.9E-22 1.7E-26 147.8 18.8 185 1-208 4-225 (226)
13 cd07392 MPP_PAE1087 Pyrobaculu 99.9 2.4E-22 5.2E-27 152.0 14.2 157 3-175 1-188 (188)
14 cd07396 MPP_Nbla03831 Homo sap 99.9 1.7E-21 3.6E-26 155.3 19.2 190 1-202 1-264 (267)
15 TIGR00583 mre11 DNA repair pro 99.9 1.4E-20 3.1E-25 156.2 20.6 215 1-223 4-307 (405)
16 PRK05340 UDP-2,3-diacylglucosa 99.9 2.5E-21 5.5E-26 152.0 14.7 185 1-205 1-236 (241)
17 cd00839 MPP_PAPs purple acid p 99.9 2.3E-19 5.1E-24 145.0 22.0 214 1-223 5-294 (294)
18 cd07393 MPP_DR1119 Deinococcus 99.8 3.2E-20 6.9E-25 144.9 14.6 175 3-183 1-232 (232)
19 cd07379 MPP_239FB Homo sapiens 99.8 4.4E-20 9.6E-25 132.4 13.1 114 2-175 1-135 (135)
20 COG2908 Uncharacterized protei 99.8 2.4E-21 5.1E-26 146.7 6.7 186 4-203 1-230 (237)
21 cd07400 MPP_YydB Bacillus subt 99.8 3.4E-20 7.3E-25 134.5 12.3 116 3-176 1-144 (144)
22 cd07378 MPP_ACP5 Homo sapiens 99.8 1.3E-19 2.7E-24 145.4 16.6 202 1-211 1-277 (277)
23 PHA02546 47 endonuclease subun 99.8 3.8E-19 8.3E-24 146.0 18.7 190 1-216 1-239 (340)
24 TIGR01854 lipid_A_lpxH UDP-2,3 99.8 4.5E-20 9.8E-25 144.0 11.8 168 3-179 1-219 (231)
25 TIGR03729 acc_ester putative p 99.8 1.6E-19 3.5E-24 141.7 12.8 164 2-174 1-235 (239)
26 cd07383 MPP_Dcr2 Saccharomyces 99.8 2.2E-19 4.8E-24 137.2 12.3 150 1-179 3-194 (199)
27 PF14582 Metallophos_3: Metall 99.8 4.6E-19 9.9E-24 132.6 13.5 183 2-205 7-253 (255)
28 cd00840 MPP_Mre11_N Mre11 nucl 99.8 8.1E-19 1.8E-23 136.2 13.9 169 2-179 1-219 (223)
29 cd07397 MPP_DevT Myxococcus xa 99.8 1.7E-18 3.7E-23 133.5 13.3 62 1-67 1-64 (238)
30 cd07399 MPP_YvnB Bacillus subt 99.8 6.5E-18 1.4E-22 130.3 16.4 166 1-201 1-203 (214)
31 COG0420 SbcD DNA repair exonuc 99.8 3.3E-18 7.2E-23 143.4 14.4 211 1-215 1-265 (390)
32 cd07404 MPP_MS158 Microscilla 99.8 2.3E-18 5E-23 127.8 12.0 141 3-173 1-161 (166)
33 PRK11340 phosphodiesterase Yae 99.8 1E-17 2.3E-22 133.6 15.5 67 1-67 50-126 (271)
34 cd07424 MPP_PrpA_PrpB PrpA and 99.8 6.3E-18 1.4E-22 129.8 12.7 165 1-179 1-198 (207)
35 cd07385 MPP_YkuE_C Bacillus su 99.8 8E-17 1.7E-21 125.1 18.3 67 1-67 2-77 (223)
36 cd07398 MPP_YbbF-LpxH Escheric 99.8 1.4E-18 3.1E-23 134.4 8.4 172 4-177 1-217 (217)
37 PRK10966 exonuclease subunit S 99.8 1.6E-17 3.4E-22 139.1 15.2 209 1-216 1-287 (407)
38 PRK09968 serine/threonine-spec 99.8 2.7E-18 5.8E-23 132.6 7.7 166 2-179 16-209 (218)
39 PLN02533 probable purple acid 99.7 1.1E-15 2.3E-20 128.9 23.0 212 1-223 140-418 (427)
40 cd07401 MPP_TMEM62_N Homo sapi 99.7 1.6E-16 3.4E-21 125.8 16.4 153 3-163 2-212 (256)
41 PRK11439 pphA serine/threonine 99.7 6.8E-18 1.5E-22 130.5 7.1 169 1-179 17-209 (218)
42 cd07403 MPP_TTHA0053 Thermus t 99.7 1.1E-16 2.3E-21 113.7 11.6 109 4-175 1-122 (129)
43 PF00149 Metallophos: Calcineu 99.7 8.4E-17 1.8E-21 119.2 10.0 67 1-67 1-79 (200)
44 cd07423 MPP_PrpE Bacillus subt 99.7 1.1E-16 2.3E-21 125.2 10.9 163 1-179 1-211 (234)
45 COG1409 Icc Predicted phosphoh 99.7 6.6E-15 1.4E-19 118.9 21.0 200 1-209 1-245 (301)
46 TIGR00619 sbcd exonuclease Sbc 99.7 5.5E-16 1.2E-20 122.4 9.9 67 1-67 1-89 (253)
47 COG1768 Predicted phosphohydro 99.7 2.1E-15 4.5E-20 108.8 11.0 161 1-162 1-200 (230)
48 PTZ00422 glideosome-associated 99.6 2.8E-13 6E-18 111.4 20.1 216 1-223 27-331 (394)
49 cd07390 MPP_AQ1575 Aquifex aeo 99.6 4.9E-15 1.1E-19 110.1 9.0 132 4-176 2-151 (168)
50 PRK04036 DNA polymerase II sma 99.6 1.7E-13 3.7E-18 117.8 18.0 180 1-202 244-497 (504)
51 cd07386 MPP_DNA_pol_II_small_a 99.5 1.3E-14 2.9E-19 114.1 7.6 158 4-179 2-221 (243)
52 cd08165 MPP_MPPE1 human MPPE1 99.5 3.1E-13 6.6E-18 99.1 12.8 125 5-179 2-153 (156)
53 cd00838 MPP_superfamily metall 99.5 1.7E-13 3.7E-18 96.7 11.0 111 4-175 1-131 (131)
54 COG1408 Predicted phosphohydro 99.5 1.2E-13 2.5E-18 110.2 11.0 187 2-199 46-283 (284)
55 KOG1432|consensus 99.5 4.1E-12 8.9E-17 100.7 17.3 212 1-216 54-368 (379)
56 cd07425 MPP_Shelphs Shewanella 99.5 1.4E-13 3E-18 105.5 7.5 157 4-178 1-199 (208)
57 PRK13625 bis(5'-nucleosyl)-tet 99.5 7.6E-13 1.7E-17 104.1 10.9 182 1-201 1-226 (245)
58 TIGR03767 P_acnes_RR metalloph 99.4 1.2E-11 2.7E-16 103.5 18.1 120 74-210 295-445 (496)
59 cd08163 MPP_Cdc1 Saccharomyces 99.4 9.9E-12 2.2E-16 98.2 15.6 131 27-165 42-232 (257)
60 KOG2310|consensus 99.4 1.4E-11 3.1E-16 102.7 16.0 211 1-222 14-316 (646)
61 cd07391 MPP_PF1019 Pyrococcus 99.4 6E-13 1.3E-17 99.3 7.1 64 4-67 1-89 (172)
62 COG4186 Predicted phosphoester 99.4 1.1E-11 2.3E-16 87.6 12.1 130 2-164 5-151 (186)
63 cd00845 MPP_UshA_N_like Escher 99.4 2E-11 4.4E-16 96.6 14.8 164 1-179 1-226 (252)
64 cd07384 MPP_Cdc1_like Saccharo 99.4 6.3E-12 1.4E-16 93.5 10.8 108 21-178 36-167 (171)
65 TIGR00024 SbcD_rel_arch putati 99.4 5.2E-12 1.1E-16 97.7 10.1 65 2-66 16-102 (225)
66 cd07410 MPP_CpdB_N Escherichia 99.4 6.8E-11 1.5E-15 94.9 16.5 172 1-179 1-249 (277)
67 cd00842 MPP_ASMase acid sphing 99.4 4.9E-11 1.1E-15 96.6 15.6 143 29-178 67-286 (296)
68 cd07406 MPP_CG11883_N Drosophi 99.3 3.3E-11 7.2E-16 95.6 12.0 165 1-179 1-225 (257)
69 cd07408 MPP_SA0022_N Staphyloc 99.3 2.3E-10 5E-15 90.8 15.7 190 1-207 1-253 (257)
70 COG1311 HYS2 Archaeal DNA poly 99.3 6.5E-11 1.4E-15 98.3 11.4 190 2-219 227-480 (481)
71 cd00844 MPP_Dbr1_N Dbr1 RNA la 99.3 5.7E-11 1.2E-15 93.9 10.7 158 3-165 1-232 (262)
72 KOG1378|consensus 99.2 3.2E-09 7E-14 88.1 19.9 213 2-223 149-437 (452)
73 PRK00166 apaH diadenosine tetr 99.2 1.9E-11 4E-16 97.3 5.4 64 1-67 1-70 (275)
74 KOG2679|consensus 99.2 3.5E-10 7.6E-15 87.2 11.3 209 1-214 44-322 (336)
75 cd07421 MPP_Rhilphs Rhilph pho 99.2 1.3E-10 2.8E-15 92.0 9.1 64 2-67 3-81 (304)
76 cd00144 MPP_PPP_family phospho 99.2 3.8E-10 8.3E-15 87.7 11.3 61 4-67 1-69 (225)
77 cd07411 MPP_SoxB_N Thermus the 99.1 2.2E-08 4.7E-13 79.8 20.3 166 1-179 1-240 (264)
78 cd08166 MPP_Cdc1_like_1 unchar 99.1 9.6E-10 2.1E-14 82.6 11.6 105 23-168 35-154 (195)
79 cd07405 MPP_UshA_N Escherichia 99.1 2.3E-08 5E-13 80.5 19.7 171 1-178 1-257 (285)
80 cd07412 MPP_YhcR_N Bacillus su 99.1 1.5E-08 3.3E-13 81.6 17.6 60 120-179 192-262 (288)
81 PHA02239 putative protein phos 99.1 1.8E-10 3.9E-15 89.8 5.2 63 1-66 1-73 (235)
82 TIGR00668 apaH bis(5'-nucleosy 99.0 2.4E-10 5.3E-15 90.2 5.0 63 1-66 1-69 (279)
83 TIGR03768 RPA4764 metallophosp 99.0 3.7E-08 8E-13 82.3 17.8 101 95-211 330-465 (492)
84 cd07387 MPP_PolD2_C PolD2 (DNA 99.0 2E-08 4.3E-13 78.9 13.8 172 2-203 1-253 (257)
85 cd07422 MPP_ApaH Escherichia c 99.0 5.3E-10 1.2E-14 88.1 4.8 62 3-67 1-68 (257)
86 PRK09419 bifunctional 2',3'-cy 99.0 4.8E-09 1E-13 99.0 11.4 172 1-179 661-900 (1163)
87 cd07407 MPP_YHR202W_N Saccharo 98.9 1E-07 2.2E-12 76.5 16.5 60 120-179 188-250 (282)
88 cd07409 MPP_CD73_N CD73 ecto-5 98.9 2.2E-07 4.7E-12 74.8 18.2 66 1-67 1-95 (281)
89 COG1407 Predicted ICC-like pho 98.9 5.6E-09 1.2E-13 80.1 8.1 66 2-67 21-111 (235)
90 cd08164 MPP_Ted1 Saccharomyces 98.9 6.7E-09 1.5E-13 77.9 7.8 32 124-165 129-160 (193)
91 smart00156 PP2Ac Protein phosp 98.9 2E-07 4.4E-12 74.3 15.7 63 1-66 28-99 (271)
92 PRK09558 ushA bifunctional UDP 98.8 4.6E-08 1E-12 85.8 11.4 186 1-203 35-309 (551)
93 cd07382 MPP_DR1281 Deinococcus 98.8 4.5E-07 9.8E-12 71.4 15.4 165 2-181 1-201 (255)
94 cd07413 MPP_PA3087 Pseudomonas 98.8 7.2E-09 1.6E-13 80.4 4.9 61 4-67 2-77 (222)
95 PRK09419 bifunctional 2',3'-cy 98.8 1.9E-07 4E-12 88.5 15.2 59 120-178 235-311 (1163)
96 TIGR00282 metallophosphoestera 98.8 5.8E-07 1.3E-11 71.1 14.7 166 1-178 1-202 (266)
97 PRK11907 bifunctional 2',3'-cy 98.7 2.1E-07 4.6E-12 84.0 12.9 66 1-67 116-214 (814)
98 PRK09418 bifunctional 2',3'-cy 98.7 2.3E-07 5E-12 83.5 12.1 60 120-179 245-307 (780)
99 COG0737 UshA 5'-nucleotidase/2 98.7 7.1E-07 1.5E-11 77.8 14.0 170 1-179 27-270 (517)
100 TIGR01390 CycNucDiestase 2',3' 98.6 2E-07 4.3E-12 82.7 9.9 59 120-178 196-271 (626)
101 cd07380 MPP_CWF19_N Schizosacc 98.6 2E-07 4.2E-12 67.6 7.8 59 4-64 1-68 (150)
102 cd07416 MPP_PP2B PP2B, metallo 98.6 3.6E-06 7.9E-11 68.2 15.7 62 2-66 44-114 (305)
103 cd07417 MPP_PP5_C PP5, C-termi 98.6 3E-06 6.5E-11 68.9 15.0 59 2-66 61-132 (316)
104 cd07414 MPP_PP1_PPKL PP1, PPKL 98.6 1.1E-06 2.4E-11 70.8 12.2 63 2-67 51-122 (293)
105 PTZ00480 serine/threonine-prot 98.6 3.9E-06 8.5E-11 68.1 15.2 62 2-66 60-130 (320)
106 cd08162 MPP_PhoA_N Synechococc 98.6 5.4E-06 1.2E-10 67.6 15.5 66 1-67 1-92 (313)
107 PRK09420 cpdB bifunctional 2', 98.5 5.1E-07 1.1E-11 80.3 10.0 66 1-67 26-123 (649)
108 PTZ00244 serine/threonine-prot 98.5 2.6E-06 5.5E-11 68.6 12.8 61 3-66 54-123 (294)
109 TIGR01530 nadN NAD pyrophospha 98.5 1.3E-05 2.8E-10 70.4 17.3 66 1-67 1-95 (550)
110 cd07415 MPP_PP2A_PP4_PP6 PP2A, 98.5 1.1E-05 2.5E-10 64.7 15.5 62 2-66 43-113 (285)
111 KOG3947|consensus 98.4 5.4E-07 1.2E-11 69.9 6.5 157 2-176 63-280 (305)
112 cd07419 MPP_Bsu1_C Arabidopsis 98.4 1.7E-05 3.7E-10 64.6 15.4 62 2-66 49-127 (311)
113 PTZ00239 serine/threonine prot 98.3 4.1E-05 8.9E-10 62.0 14.8 62 2-66 44-114 (303)
114 KOG2863|consensus 98.3 2.3E-06 4.9E-11 68.9 6.8 158 1-164 1-233 (456)
115 cd07420 MPP_RdgC Drosophila me 98.2 1.5E-06 3.3E-11 70.5 4.7 60 2-67 52-124 (321)
116 KOG3770|consensus 98.1 0.00023 4.9E-09 61.4 14.4 128 30-164 210-407 (577)
117 cd07418 MPP_PP7 PP7, metalloph 98.0 6.8E-06 1.5E-10 68.0 5.1 60 2-67 67-139 (377)
118 COG1692 Calcineurin-like phosp 98.0 0.0047 1E-07 47.8 18.7 164 1-178 1-201 (266)
119 KOG3662|consensus 97.9 2.7E-05 5.9E-10 64.6 6.3 87 1-87 49-180 (410)
120 PHA03008 hypothetical protein; 97.6 0.0018 4E-08 48.0 10.7 56 120-175 160-221 (234)
121 PF04042 DNA_pol_E_B: DNA poly 97.4 0.00086 1.9E-08 51.5 7.6 85 3-88 1-137 (209)
122 smart00854 PGA_cap Bacterial c 97.3 0.0097 2.1E-07 46.7 12.3 123 43-172 63-229 (239)
123 cd07381 MPP_CapA CapA and rela 97.2 0.012 2.6E-07 46.2 12.1 123 43-172 67-231 (239)
124 PF13277 YmdB: YmdB-like prote 97.1 0.012 2.7E-07 46.0 11.3 161 4-178 1-197 (253)
125 KOG0374|consensus 97.1 0.013 2.7E-07 48.2 11.7 68 136-211 231-302 (331)
126 PF09587 PGA_cap: Bacterial ca 97.1 0.052 1.1E-06 42.9 14.7 129 43-178 65-247 (250)
127 KOG0373|consensus 96.0 0.028 6E-07 42.9 6.5 59 3-67 48-118 (306)
128 KOG4419|consensus 96.0 0.12 2.7E-06 45.0 11.1 67 1-67 43-135 (602)
129 KOG0371|consensus 95.8 0.0083 1.8E-07 46.7 2.9 59 3-67 62-132 (319)
130 KOG0372|consensus 95.7 0.014 2.9E-07 45.3 3.6 62 3-67 45-115 (303)
131 KOG2476|consensus 94.4 0.38 8.3E-06 40.8 8.9 58 2-64 7-76 (528)
132 KOG3818|consensus 94.3 0.4 8.6E-06 40.5 8.7 64 2-67 284-370 (525)
133 PTZ00235 DNA polymerase epsilo 93.8 0.13 2.8E-06 41.2 4.9 65 1-67 28-123 (291)
134 KOG1625|consensus 91.8 2.8 6E-05 36.7 10.3 45 148-198 534-578 (600)
135 COG5214 POL12 DNA polymerase a 90.5 9.8 0.00021 32.2 12.4 46 147-198 506-551 (581)
136 KOG0375|consensus 90.5 0.25 5.5E-06 40.6 2.8 58 3-66 90-159 (517)
137 PF06874 FBPase_2: Firmicute f 90.0 0.2 4.4E-06 44.2 2.1 60 140-201 510-578 (640)
138 PF09423 PhoD: PhoD-like phosp 89.8 0.99 2.2E-05 39.0 6.2 39 1-42 106-144 (453)
139 PRK02228 V-type ATP synthase s 87.8 0.94 2E-05 30.4 3.7 61 1-61 1-79 (100)
140 KOG0376|consensus 86.9 3.6 7.8E-05 35.4 7.4 63 2-66 215-286 (476)
141 COG3855 Fbp Uncharacterized pr 80.2 1.2 2.7E-05 38.0 2.0 45 21-66 181-230 (648)
142 TIGR01768 GGGP-family geranylg 68.3 16 0.00035 28.4 5.4 47 21-67 18-69 (223)
143 PRK13600 putative ribosomal pr 65.1 24 0.00053 22.8 4.9 41 21-61 20-63 (84)
144 PRK04169 geranylgeranylglycery 64.6 25 0.00055 27.5 5.9 44 24-67 26-74 (232)
145 PRK01395 V-type ATP synthase s 62.8 9.1 0.0002 25.8 2.8 38 27-64 42-82 (104)
146 cd07389 MPP_PhoD Bacillus subt 62.7 28 0.00061 26.7 6.0 16 27-42 26-41 (228)
147 COG2248 Predicted hydrolase (m 61.6 11 0.00023 29.9 3.3 36 2-42 178-213 (304)
148 PF13727 CoA_binding_3: CoA-bi 60.4 11 0.00024 27.3 3.2 41 20-60 131-175 (175)
149 cd01141 TroA_d Periplasmic bin 60.1 20 0.00044 26.4 4.6 34 28-61 67-100 (186)
150 PF06874 FBPase_2: Firmicute f 59.4 31 0.00067 31.0 6.0 45 21-66 175-224 (640)
151 PRK03957 V-type ATP synthase s 58.8 7.8 0.00017 25.9 1.9 60 1-63 1-76 (100)
152 TIGR01012 Sa_S2_E_A ribosomal 58.0 21 0.00045 27.2 4.2 31 29-59 107-137 (196)
153 COG1433 Uncharacterized conser 57.3 26 0.00057 24.4 4.4 39 21-61 56-94 (121)
154 PF02350 Epimerase_2: UDP-N-ac 56.6 8.8 0.00019 31.9 2.3 41 21-62 58-100 (346)
155 PF13258 DUF4049: Domain of un 54.5 18 0.0004 28.3 3.4 16 52-67 126-141 (318)
156 PRK01189 V-type ATP synthase s 54.2 15 0.00032 24.8 2.7 44 21-64 36-85 (104)
157 COG1646 Predicted phosphate-bi 54.1 65 0.0014 25.3 6.3 49 19-67 30-84 (240)
158 cd07413 MPP_PA3087 Pseudomonas 53.9 22 0.00048 27.5 4.0 29 151-179 178-208 (222)
159 cd01149 HutB Hemin binding pro 53.6 30 0.00065 26.7 4.7 34 27-60 55-88 (235)
160 PF03437 BtpA: BtpA family; I 52.7 68 0.0015 25.5 6.5 59 3-61 141-208 (254)
161 cd02067 B12-binding B12 bindin 52.7 44 0.00095 22.7 5.0 44 21-64 41-91 (119)
162 COG2875 CobM Precorrin-4 methy 52.3 29 0.00062 27.2 4.2 21 43-63 93-113 (254)
163 PRK12613 galactose-6-phosphate 51.7 9 0.00019 27.5 1.4 33 1-38 1-33 (141)
164 cd02812 PcrB_like PcrB_like pr 50.2 42 0.00091 26.0 4.9 48 20-67 15-68 (219)
165 COG0639 ApaH Diadenosine tetra 50.1 21 0.00046 24.6 3.2 74 123-198 45-122 (155)
166 PF01884 PcrB: PcrB family; I 49.5 50 0.0011 25.8 5.2 49 19-67 21-73 (230)
167 TIGR01118 lacA galactose-6-pho 48.9 11 0.00023 27.1 1.4 33 1-38 1-33 (141)
168 COG0698 RpiB Ribose 5-phosphat 48.1 14 0.0003 26.8 1.8 32 1-36 1-32 (151)
169 PRK01018 50S ribosomal protein 47.5 70 0.0015 21.3 5.1 45 21-65 23-70 (99)
170 PRK08621 galactose-6-phosphate 47.4 12 0.00025 26.9 1.4 33 1-38 1-33 (142)
171 KOG0377|consensus 46.4 9.8 0.00021 32.5 1.0 30 136-165 360-389 (631)
172 COG0434 SgcQ Predicted TIM-bar 44.9 1.2E+02 0.0025 24.0 6.5 60 2-61 145-213 (263)
173 PRK12360 4-hydroxy-3-methylbut 44.4 40 0.00086 27.3 4.1 26 31-56 31-57 (281)
174 PHA02239 putative protein phos 44.3 26 0.00056 27.5 3.0 29 150-178 191-221 (235)
175 TIGR01119 lacB galactose-6-pho 44.2 13 0.00029 27.5 1.3 33 1-38 1-33 (171)
176 PRK13602 putative ribosomal pr 44.1 80 0.0017 20.1 4.8 44 21-64 18-64 (82)
177 PF00072 Response_reg: Respons 43.6 68 0.0015 20.8 4.7 44 21-64 34-82 (112)
178 TIGR03568 NeuC_NnaA UDP-N-acet 42.8 38 0.00081 28.4 4.0 42 21-63 84-128 (365)
179 PRK05571 ribose-5-phosphate is 42.1 15 0.00033 26.5 1.3 33 1-38 1-33 (148)
180 cd06295 PBP1_CelR Ligand bindi 41.8 64 0.0014 25.2 5.0 40 21-60 55-94 (275)
181 PRK08622 galactose-6-phosphate 41.5 16 0.00034 27.2 1.3 33 1-38 1-33 (171)
182 PRK12615 galactose-6-phosphate 41.1 16 0.00034 27.1 1.3 33 1-38 1-33 (171)
183 COG2247 LytB Putative cell wal 39.9 69 0.0015 26.4 4.8 61 27-87 72-140 (337)
184 COG0381 WecB UDP-N-acetylgluco 38.8 56 0.0012 27.7 4.2 39 21-61 83-124 (383)
185 PRK09982 universal stress prot 38.5 36 0.00079 23.9 2.9 23 138-161 92-114 (142)
186 PRK01045 ispH 4-hydroxy-3-meth 36.7 52 0.0011 26.9 3.7 26 31-56 30-56 (298)
187 TIGR03413 GSH_gloB hydroxyacyl 36.3 61 0.0013 25.5 4.0 34 32-66 119-167 (248)
188 COG0052 RpsB Ribosomal protein 36.0 60 0.0013 25.7 3.8 31 30-60 156-186 (252)
189 PTZ00215 ribose 5-phosphate is 35.8 26 0.00057 25.4 1.7 33 1-38 3-37 (151)
190 PF00582 Usp: Universal stress 35.6 95 0.0021 20.7 4.6 41 20-60 92-140 (140)
191 TIGR02133 RPI_actino ribose 5- 35.1 24 0.00051 25.6 1.4 33 1-38 1-33 (148)
192 TIGR03677 rpl7ae 50S ribosomal 34.9 1.4E+02 0.003 20.5 5.2 44 21-64 33-80 (117)
193 cd08059 MPN_prok_mb Mpr1p, Pad 34.9 71 0.0015 21.0 3.7 38 119-157 54-92 (101)
194 COG3540 PhoD Phosphodiesterase 34.7 24 0.00051 30.7 1.5 25 137-161 392-418 (522)
195 PRK04020 rps2P 30S ribosomal p 34.6 82 0.0018 24.2 4.3 31 30-60 114-144 (204)
196 PTZ00106 60S ribosomal protein 34.2 1.3E+02 0.0029 20.3 4.9 44 22-65 33-79 (108)
197 TIGR00640 acid_CoA_mut_C methy 34.2 1.1E+02 0.0023 21.6 4.6 44 20-63 43-93 (132)
198 PRK13601 putative L7Ae-like ri 34.1 1.3E+02 0.0028 19.3 4.7 37 21-57 15-54 (82)
199 PF02579 Nitro_FeMo-Co: Dinitr 34.1 98 0.0021 19.7 4.2 37 21-59 44-80 (94)
200 PF10087 DUF2325: Uncharacteri 33.8 1.1E+02 0.0024 20.0 4.4 37 22-60 42-82 (97)
201 PTZ00222 60S ribosomal protein 33.0 1.2E+02 0.0026 24.2 5.0 46 21-66 139-188 (263)
202 TIGR00236 wecB UDP-N-acetylglu 32.4 78 0.0017 26.2 4.3 41 21-61 77-118 (365)
203 cd02071 MM_CoA_mut_B12_BD meth 31.7 1.2E+02 0.0027 20.7 4.6 42 21-62 41-89 (122)
204 PRK06683 hypothetical protein; 31.5 1.4E+02 0.0031 19.0 4.8 40 21-60 18-60 (82)
205 cd01985 ETF The electron trans 30.9 1.1E+02 0.0025 22.4 4.6 24 139-162 81-104 (181)
206 KOG0075|consensus 30.8 70 0.0015 23.3 3.1 58 149-214 20-77 (186)
207 cd03786 GT1_UDP-GlcNAc_2-Epime 30.8 92 0.002 25.5 4.5 41 22-62 80-121 (363)
208 PF13167 GTP-bdg_N: GTP-bindin 30.7 1.2E+02 0.0027 20.1 4.1 37 20-56 47-83 (95)
209 COG1358 RPL8A Ribosomal protei 30.4 1.5E+02 0.0034 20.4 4.7 46 21-66 34-83 (116)
210 PRK15005 universal stress prot 30.1 1.2E+02 0.0025 21.0 4.4 31 31-63 86-116 (144)
211 PF13285 DUF4073: Domain of un 29.9 2.1E+02 0.0046 20.6 5.5 56 167-222 18-84 (158)
212 TIGR01769 GGGP geranylgeranylg 29.8 2.6E+02 0.0056 21.5 14.0 43 25-67 19-67 (205)
213 PTZ00365 60S ribosomal protein 29.7 1.3E+02 0.0028 24.1 4.7 46 21-66 139-188 (266)
214 COG1911 RPL30 Ribosomal protei 29.7 1.7E+02 0.0038 19.5 4.6 43 23-65 28-73 (100)
215 TIGR01501 MthylAspMutase methy 29.0 1.7E+02 0.0037 20.7 4.9 43 20-62 42-91 (134)
216 COG5555 Cytolysin, a secreted 28.9 81 0.0018 25.7 3.5 32 138-169 311-343 (392)
217 PLN02469 hydroxyacylglutathion 28.7 96 0.0021 24.6 4.0 35 32-67 128-178 (258)
218 TIGR03659 IsdE heme ABC transp 28.5 1.2E+02 0.0025 24.3 4.6 33 27-60 88-120 (289)
219 PTZ00254 40S ribosomal protein 28.4 1.2E+02 0.0026 24.1 4.4 32 29-60 117-148 (249)
220 PRK03379 vitamin B12-transport 28.0 1.2E+02 0.0026 23.8 4.5 33 28-60 70-102 (260)
221 PRK14093 UDP-N-acetylmuramoyla 28.0 31 0.00067 30.1 1.2 30 32-61 370-408 (479)
222 PF01248 Ribosomal_L7Ae: Ribos 27.8 1.7E+02 0.0037 18.8 4.8 41 21-61 22-66 (95)
223 COG4020 Uncharacterized protei 27.8 78 0.0017 25.2 3.2 24 43-66 99-122 (332)
224 TIGR03025 EPS_sugtrans exopoly 27.6 1.2E+02 0.0025 26.2 4.7 64 20-85 178-245 (445)
225 COG4939 Major membrane immunog 27.4 1.7E+02 0.0037 20.6 4.4 44 174-217 31-76 (147)
226 cd06297 PBP1_LacI_like_12 Liga 27.3 1.4E+02 0.003 23.3 4.7 34 26-59 51-84 (269)
227 cd00562 NifX_NifB This CD repr 27.1 1.3E+02 0.0029 19.3 4.0 40 21-62 52-91 (102)
228 PRK03979 ADP-specific phosphof 26.7 82 0.0018 27.5 3.4 35 2-38 194-230 (463)
229 PF01936 NYN: NYN domain; Int 26.4 67 0.0015 22.4 2.6 29 31-60 97-126 (146)
230 COG1609 PurR Transcriptional r 26.2 1.5E+02 0.0033 24.4 5.0 44 21-64 105-148 (333)
231 PF04587 ADP_PFK_GK: ADP-speci 26.1 57 0.0012 28.3 2.4 35 2-38 181-217 (444)
232 PRK10241 hydroxyacylglutathion 25.8 99 0.0021 24.4 3.6 33 34-67 122-169 (251)
233 PRK04175 rpl7ae 50S ribosomal 25.4 2.3E+02 0.005 19.6 5.0 42 21-62 37-82 (122)
234 PRK14038 ADP-dependent glucoki 25.3 81 0.0018 27.4 3.2 35 2-38 196-232 (453)
235 PRK15447 putative protease; Pr 25.0 1.7E+02 0.0037 23.8 4.9 39 20-58 18-66 (301)
236 PF02421 FeoB_N: Ferrous iron 24.9 92 0.002 22.7 3.0 39 23-61 71-113 (156)
237 cd01542 PBP1_TreR_like Ligand- 24.8 1.7E+02 0.0036 22.4 4.8 34 26-59 51-84 (259)
238 PRK10773 murF UDP-N-acetylmura 24.7 37 0.0008 29.4 1.1 30 32-61 354-392 (453)
239 cd01143 YvrC Periplasmic bindi 24.4 1.6E+02 0.0034 21.6 4.4 32 28-60 58-89 (195)
240 PRK05583 ribosomal protein L7A 24.3 2.3E+02 0.005 19.0 5.0 44 21-65 24-70 (104)
241 TIGR03307 PhnP phosphonate met 24.0 3.4E+02 0.0073 20.9 6.8 32 33-64 146-179 (238)
242 cd01984 AANH_like Adenine nucl 23.9 98 0.0021 19.3 2.8 25 139-163 38-62 (86)
243 cd01139 TroA_f Periplasmic bin 23.9 1.3E+02 0.0029 24.6 4.2 34 27-60 88-125 (342)
244 TIGR00111 pelota probable tran 23.7 1.9E+02 0.0042 24.2 5.1 46 22-67 285-335 (351)
245 cd06273 PBP1_GntR_like_1 This 23.4 1.9E+02 0.0041 22.3 4.9 34 27-60 52-85 (268)
246 PRK10116 universal stress prot 23.3 1.9E+02 0.0042 19.8 4.5 30 34-65 84-113 (142)
247 TIGR03023 WcaJ_sugtrans Undeca 23.3 1.5E+02 0.0033 25.6 4.6 64 20-85 181-248 (451)
248 COG0299 PurN Folate-dependent 23.3 60 0.0013 24.7 1.8 21 18-38 67-87 (200)
249 PRK14039 ADP-dependent glucoki 23.0 1E+02 0.0022 26.8 3.4 35 2-38 182-218 (453)
250 cd00851 MTH1175 This uncharact 22.9 1.8E+02 0.0038 18.8 4.0 37 22-60 55-91 (103)
251 TIGR00215 lpxB lipid-A-disacch 22.9 1.9E+02 0.0041 24.4 5.0 36 23-59 82-119 (385)
252 cd02072 Glm_B12_BD B12 binding 22.8 1.9E+02 0.0042 20.3 4.2 43 20-62 40-89 (128)
253 cd06299 PBP1_LacI_like_13 Liga 22.5 2.1E+02 0.0045 22.0 4.9 35 26-60 51-85 (265)
254 PLN02398 hydroxyacylglutathion 22.4 1.5E+02 0.0032 24.7 4.1 33 33-66 200-247 (329)
255 PF02310 B12-binding: B12 bind 22.3 1.1E+02 0.0024 20.5 3.0 18 21-38 42-59 (121)
256 PRK07714 hypothetical protein; 22.2 2.4E+02 0.0053 18.6 4.8 39 21-59 25-66 (100)
257 COG0149 TpiA Triosephosphate i 22.2 1.1E+02 0.0023 24.4 3.0 36 143-178 82-132 (251)
258 PRK00025 lpxB lipid-A-disaccha 22.1 2E+02 0.0044 23.7 5.1 42 22-64 77-120 (380)
259 KOG3076|consensus 21.6 65 0.0014 24.4 1.7 21 18-38 75-95 (206)
260 COG0561 Cof Predicted hydrolas 21.6 3.9E+02 0.0084 20.8 6.3 54 1-55 2-60 (264)
261 TIGR02855 spore_yabG sporulati 21.4 74 0.0016 25.6 2.0 22 17-38 140-161 (283)
262 cd01011 nicotinamidase Nicotin 21.4 1.7E+02 0.0038 21.9 4.1 18 44-61 128-145 (196)
263 PF08759 DUF1792: Domain of un 21.2 2.4E+02 0.0052 22.1 4.7 26 17-42 25-50 (225)
264 KOG3873|consensus 20.8 78 0.0017 26.6 2.1 21 22-42 159-181 (422)
265 cd01575 PBP1_GntR Ligand-bindi 20.8 2.4E+02 0.0053 21.5 5.0 37 26-63 51-87 (268)
266 cd01144 BtuF Cobalamin binding 20.7 2.1E+02 0.0046 21.9 4.6 34 27-60 54-87 (245)
267 PF07905 PucR: Purine cataboli 20.6 2.9E+02 0.0063 18.9 4.8 36 28-63 70-109 (123)
268 TIGR03281 methan_mark_12 putat 20.6 1.6E+02 0.0034 24.3 3.7 46 21-66 41-115 (326)
269 PF05582 Peptidase_U57: YabG p 20.5 59 0.0013 26.2 1.4 22 17-38 141-162 (287)
270 COG2843 PgsA Putative enzyme o 20.1 3.3E+02 0.0071 23.1 5.6 55 119-173 223-282 (372)
271 cd06298 PBP1_CcpA_like Ligand- 20.0 2.1E+02 0.0046 21.9 4.5 32 28-59 53-84 (268)
No 1
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=100.00 E-value=2.1e-33 Score=209.98 Aligned_cols=178 Identities=79% Similarity=1.325 Sum_probs=144.3
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEecCCCCCCCCCCcceEEEeCCEE
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQFR 81 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~GNHD~~~~~~~~~~~~~~~~~ 81 (224)
+|+++||+|++.+...+++.+.++++..++|.++++||+++.++++.+++++.++++|.||||....+|..
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~~~~~~~l~~~~~~~~~V~GN~D~~~~lp~~--------- 71 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSKETYDYLKTIAPDVHIVRGDFDENLNYPET--------- 71 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCCHHHHHHHHhhCCceEEEECCCCccccCCCc---------
Confidence 58999999976554455667888877678999999999999999999988766899999999985333333
Q ss_pred EEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCC
Q psy10859 82 IGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKF 161 (224)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~ 161 (224)
.....++.+++++||++..++...+.+..+++..+++++++||||.+
T Consensus 72 ---------------------------------~~~~~~g~~i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p 118 (178)
T cd07394 72 ---------------------------------KVITVGQFKIGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKF 118 (178)
T ss_pred ---------------------------------EEEEECCEEEEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcc
Confidence 33445566777777776655555666666667788999999999999
Q ss_pred ceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEEEEEEEeecCceeEEEEee
Q psy10859 162 EAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDY 221 (224)
Q Consensus 162 ~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (224)
.....++++++||||++.++.|.+....++|++++++++.+.++++++.+++++++.|++
T Consensus 119 ~~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (178)
T cd07394 119 EAFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVVTYVYQLIDGEVKVEKIEY 178 (178)
T ss_pred eEEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEEEEEEEEECCcEEEEEecC
Confidence 999999999999999997554545556789999999999999999999999999999975
No 2
>KOG3325|consensus
Probab=99.97 E-value=7.7e-30 Score=176.61 Aligned_cols=182 Identities=77% Similarity=1.305 Sum_probs=163.0
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEecCCCCCCCCCCcceEEEeCCE
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQF 80 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~GNHD~~~~~~~~~~~~~~~~ 80 (224)
|-++++||+|.+.+...++.+|.+.+--.++..++++|.++.++.++.|+.+...+.+|+|..|....+|+...++++
T Consensus 1 mLvL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlcs~e~~dylk~l~~dvhiVrGeFD~~~~yP~~kvvtvG-- 78 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLCSKESYDYLKTLSSDVHIVRGEFDENLKYPENKVVTVG-- 78 (183)
T ss_pred CEEEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcchHHHHHHHHhhCCCcEEEecccCccccCCccceEEec--
Confidence 778999999999998899999999887778999999999999999999999988999999999987777766555444
Q ss_pred EEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCC
Q psy10859 81 RIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHK 160 (224)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~ 160 (224)
.++|.++||+..-||.+++.++.++|+.++|+.+.||||.
T Consensus 79 ----------------------------------------qfkIG~chGhqViP~gd~~sL~~LaRqldvDILl~G~Th~ 118 (183)
T KOG3325|consen 79 ----------------------------------------QFKIGLCHGHQVIPWGDPESLALLARQLDVDILLTGHTHK 118 (183)
T ss_pred ----------------------------------------cEEEEeecCcEeecCCCHHHHHHHHHhcCCcEEEeCCcee
Confidence 4456677777777888898898889999999999999999
Q ss_pred CceEEEcCEEEEcCCCCCCCCCCCCCC-CCCeEEEEEEeCCeEEEEEEEeecCceeEEEEeeccC
Q psy10859 161 FEAYEHENKFYINPGSATGAFNPLEPK-VNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKKS 224 (224)
Q Consensus 161 ~~~~~~~~~~~in~Gs~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (224)
...++.+|..++||||.++.|+....+ -.++|.++|+.+..+.++.+++-++++++++++|||.
T Consensus 119 f~Aye~eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~~v~YvY~lidgeVkVdki~ykK~ 183 (183)
T KOG3325|consen 119 FEAYEHEGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGSTVVTYVYRLIDGEVKVDKIEYKKP 183 (183)
T ss_pred EEEEEeCCcEEeCCCcccCCCcccccCCCCCceEEEEecCCEEEEEEeeeeCCcEEEEEEEecCC
Confidence 999999999999999999998776666 6899999999999999999999999999999999985
No 3
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.96 E-value=2.7e-28 Score=179.75 Aligned_cols=156 Identities=32% Similarity=0.499 Sum_probs=119.7
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCC-CccEEEEcCCCCChHHHHHHHhcCCcEEEecCCCCCCCCCCcceEEEeCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPG-RIQHILCTGNLVTKETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQ 79 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~-~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~GNHD~~~~~~~~~~~~~~~ 79 (224)
|||+++||+|++.. .+ +.+.+.++.. ++|.|+++||+++.++++.+++++.|+++|+||||...
T Consensus 1 m~i~viSD~H~~~~--~~-~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~l~~~~~~~~~V~GN~D~~~------------ 65 (158)
T TIGR00040 1 MKILVISDTHGPLR--AT-ELPVELFNLESNVDLVIHAGDLTSPFVLKEFEDLAAKVIAVRGNNDGER------------ 65 (158)
T ss_pred CEEEEEecccCCcc--hh-HhHHHHHhhccCCCEEEEcCCCCCHHHHHHHHHhCCceEEEccCCCchh------------
Confidence 99999999998543 22 3344555555 89999999999998899999888778999999999741
Q ss_pred EEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCC
Q psy10859 80 FRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTH 159 (224)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H 159 (224)
..++.......++.+++++|+++..+....+.+..+.+..+++++++||+|
T Consensus 66 -----------------------------~~~~~~~~~~~~g~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH 116 (158)
T TIGR00040 66 -----------------------------DELPEEEIFEAEGIDFGLVHGDLVYPRGDLLVLEYLAKELGVDVLIFGHTH 116 (158)
T ss_pred -----------------------------hhCCcceEEEECCEEEEEEeCcccccCCCHHHHHHHHhccCCCEEEECCCC
Confidence 012223334556677888888765554555556566666789999999999
Q ss_pred CCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEEE
Q psy10859 160 KFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVT 204 (224)
Q Consensus 160 ~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 204 (224)
.+.....++++++||||++.+ +.. ..++|+++++++++++.
T Consensus 117 ~~~~~~~~~~~~iNpGs~~~~---~~~-~~~~~~il~~~~~~~~~ 157 (158)
T TIGR00040 117 IPVAEELRGILLINPGSLTGP---RNG-NTPSYAILDVDKDKVTA 157 (158)
T ss_pred CCccEEECCEEEEECCccccc---cCC-CCCeEEEEEecCCeEEe
Confidence 999989999999999999963 322 36799999999987754
No 4
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.96 E-value=6.5e-28 Score=177.48 Aligned_cols=168 Identities=32% Similarity=0.447 Sum_probs=135.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCChHHHHHHHh-cCCcEEEecCCCCCCCCCCcceEEEeCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKT-LASDVHVVRGDFDEGTSYPEKKVVTVGQ 79 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~-l~~~v~~v~GNHD~~~~~~~~~~~~~~~ 79 (224)
|||+++||+|.+.+ . .....+....+++|+||++||++.......+.. +..++++|.||.|.....
T Consensus 2 m~ilviSDtH~~~~--~-~~~~~~~~~~~~~d~vih~GD~~~~~~~~~l~~~~~~~i~~V~GN~D~~~~~---------- 68 (172)
T COG0622 2 MKILVISDTHGPLR--A-IEKALKIFNLEKVDAVIHAGDSTSPFTLDALEGGLAAKLIAVRGNCDGEVDQ---------- 68 (172)
T ss_pred cEEEEEeccCCChh--h-hhHHHHHhhhcCCCEEEECCCcCCccchHHhhcccccceEEEEccCCCcccc----------
Confidence 89999999999654 1 233445556789999999999999888888888 578999999999985200
Q ss_pred EEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCC
Q psy10859 80 FRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTH 159 (224)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H 159 (224)
..+|.....+.++.+++++||+.+.+..+...+..+++..++|++++||||
T Consensus 69 -----------------------------~~~p~~~~~~~~g~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH 119 (172)
T COG0622 69 -----------------------------EELPEELVLEVGGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTH 119 (172)
T ss_pred -----------------------------ccCChhHeEEECCEEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCC
Confidence 024445556777888888888876666678888888899999999999999
Q ss_pred CCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEEEEEEEeecCce
Q psy10859 160 KFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEV 214 (224)
Q Consensus 160 ~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 214 (224)
.+...+.+++.++||||++. |+.. .+.+|+++++++.++...+......++
T Consensus 120 ~p~~~~~~~i~~vNPGS~s~---pr~~-~~~sy~il~~~~~~~~~~~~~~~~~~~ 170 (172)
T COG0622 120 KPVAEKVGGILLVNPGSVSG---PRGG-NPASYAILDVDNLEVEVLFLERDRAEV 170 (172)
T ss_pred cccEEEECCEEEEcCCCcCC---CCCC-CCcEEEEEEcCCCEEEEEEeecccccc
Confidence 99999999999999999995 4444 566999999999999888887765543
No 5
>PRK09453 phosphodiesterase; Provisional
Probab=99.95 E-value=4.7e-26 Score=171.55 Aligned_cols=162 Identities=27% Similarity=0.323 Sum_probs=116.2
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-------------hHHHHHHHhcCCcEEEecCCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-------------KETFDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-------------~~~~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
||++++||+|++.. . .+++.+.+++.++|.|+++||+++ .++++.+++++.++++|+||||...
T Consensus 1 mri~viSD~Hg~~~--~-~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~~ 77 (182)
T PRK09453 1 MKLMFASDTHGSLP--A-TEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSEV 77 (182)
T ss_pred CeEEEEEeccCCHH--H-HHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcchh
Confidence 99999999997532 2 234555556688999999999996 3567778777779999999999752
Q ss_pred CCCcceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhh
Q psy10859 68 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQ 147 (224)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~ 147 (224)
... . .+ .+ ..+.......++.+++++||++..+ + .+.+.
T Consensus 78 ~~~-------------~-~~---~~-----------------~~~~~~~~~l~g~~i~l~HG~~~~~----~---~~~~~ 116 (182)
T PRK09453 78 DQM-------------L-LH---FP-----------------IMAPYQQVLLEGKRLFLTHGHLYGP----E---NLPAL 116 (182)
T ss_pred hhh-------------c-cC---Cc-----------------ccCceEEEEECCeEEEEECCCCCCh----h---hcccc
Confidence 100 0 00 00 0111122445678899999986532 1 11345
Q ss_pred cCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEEEEEEEeecCce
Q psy10859 148 LDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEV 214 (224)
Q Consensus 148 ~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 214 (224)
.++|++++||+|.+.....+++.++||||++. |+ ....++|++++++ .++++++.++++
T Consensus 117 ~~~d~vi~GHtH~p~~~~~~~~~~iNpGs~~~---p~-~~~~~s~~il~~~----~~~~~~~~~~~~ 175 (182)
T PRK09453 117 HDGDVLVYGHTHIPVAEKQGGIILFNPGSVSL---PK-GGYPASYGILDDN----VLSVIDLEGGEV 175 (182)
T ss_pred cCCCEEEECCCCCCcceEECCEEEEECCCccc---cC-CCCCCeEEEEECC----cEEEEECCCCeE
Confidence 67899999999999999999999999999995 44 3567899999984 567788877764
No 6
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.94 E-value=2.3e-26 Score=168.95 Aligned_cols=155 Identities=26% Similarity=0.441 Sum_probs=111.1
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-hHHHHHHHhcCCcEEEecCCCCCCCCCCcceEEEeCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-KETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQ 79 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-~~~~~~l~~l~~~v~~v~GNHD~~~~~~~~~~~~~~~ 79 (224)
|||+++||+|++.. .+. ++.+.+ .++|+|+++||+++ .++++.++++ |+++|+||||... ++....
T Consensus 1 Mki~~~sD~H~~~~--~~~-~~~~~~--~~~d~vi~~GDi~~~~~~~~~~~~~--~~~~v~GNHD~~~-~~~~~~----- 67 (156)
T PF12850_consen 1 MKIAVISDLHGNLD--ALE-AVLEYI--NEPDFVIILGDIFDPEEVLELLRDI--PVYVVRGNHDNWA-FPNEND----- 67 (156)
T ss_dssp EEEEEEE--TTTHH--HHH-HHHHHH--TTESEEEEES-SCSHHHHHHHHHHH--EEEEE--CCHSTH-HHSEEC-----
T ss_pred CEEEEEeCCCCChh--HHH-HHHHHh--cCCCEEEECCCchhHHHHHHHHhcC--CEEEEeCCccccc-chhhhh-----
Confidence 99999999998543 222 333333 46999999999999 7888888887 9999999999753 111100
Q ss_pred EEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCC
Q psy10859 80 FRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTH 159 (224)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H 159 (224)
. ..++........+.+++++|+.+.......+.+...+...+++++++||+|
T Consensus 68 -----------~-----------------~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H 119 (156)
T PF12850_consen 68 -----------E-----------------EYLLDALRLTIDGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTH 119 (156)
T ss_dssp -----------T-----------------CSSHSEEEEEETTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSS
T ss_pred -----------c-----------------cccccceeeeecCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcc
Confidence 0 002233445667889999999887766666666667778899999999999
Q ss_pred CCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCC
Q psy10859 160 KFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSS 200 (224)
Q Consensus 160 ~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~ 200 (224)
.+.....+++.++||||++... ...+++|++++++++
T Consensus 120 ~~~~~~~~~~~~~~~Gs~~~~~----~~~~~~~~i~~~~~~ 156 (156)
T PF12850_consen 120 RPQVFKIGGIHVINPGSIGGPR----HGDQSGYAILDIEDK 156 (156)
T ss_dssp SEEEEEETTEEEEEE-GSSS-S----SSSSEEEEEEEETTT
T ss_pred cceEEEECCEEEEECCcCCCCC----CCCCCEEEEEEEecC
Confidence 9999999999999999999642 222899999999863
No 7
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.94 E-value=3.1e-25 Score=162.99 Aligned_cols=154 Identities=24% Similarity=0.308 Sum_probs=107.7
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEecCCCCCCCCCCcceEEEeCCEE
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQFR 81 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~GNHD~~~~~~~~~~~~~~~~~ 81 (224)
|++++||+|++.. . .+.+.+.++ ++|.++++||+++......+ ....|+++|+||||....
T Consensus 1 ~i~~isD~H~~~~--~-~~~~~~~~~--~~d~ii~~GD~~~~~~~~~~-~~~~~~~~V~GNhD~~~~------------- 61 (155)
T cd00841 1 KIGVISDTHGSLE--L-LEKALELFG--DVDLIIHAGDVLYPGPLNEL-ELKAPVIAVRGNCDGEVD------------- 61 (155)
T ss_pred CEEEEecCCCCHH--H-HHHHHHHhc--CCCEEEECCccccccccchh-hcCCcEEEEeCCCCCcCC-------------
Confidence 6899999998541 1 222333332 29999999999993332223 235689999999998531
Q ss_pred EEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCC
Q psy10859 82 IGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKF 161 (224)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~ 161 (224)
...+|.......++.+++++|+++......... ..+++..+++++++||+|.+
T Consensus 62 --------------------------~~~~p~~~~~~~~g~~i~v~Hg~~~~~~~~~~~-~~~~~~~~~d~vi~GHtH~~ 114 (155)
T cd00841 62 --------------------------FPILPEEAVLEIGGKRIFLTHGHLYGVKNGLDR-LYLAKEGGADVVLYGHTHIP 114 (155)
T ss_pred --------------------------cccCCceEEEEECCEEEEEECCcccccccchhh-hhhhhhcCCCEEEECcccCC
Confidence 012333444556677788888776544333222 34456678999999999999
Q ss_pred ceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEEEEE
Q psy10859 162 EAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYV 206 (224)
Q Consensus 162 ~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 206 (224)
.....++++++||||++. |+. .+.++|+++++++ ++++++
T Consensus 115 ~~~~~~~~~~inpGs~~~---~~~-~~~~~~~i~~~~~-~~~~~~ 154 (155)
T cd00841 115 VIEKIGGVLLLNPGSLSL---PRG-GGPPTYAILEIDD-KGEVEI 154 (155)
T ss_pred ccEEECCEEEEeCCCccC---cCC-CCCCeEEEEEecC-CCcEEE
Confidence 998899999999999995 433 4688999999997 565554
No 8
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.93 E-value=5.2e-24 Score=170.41 Aligned_cols=207 Identities=17% Similarity=0.222 Sum_probs=139.2
Q ss_pred CeEEEEeeccCCCCC-C-----CChHHHHHhh----c-CCCccEEEEcCCCCC-------hHHHHHHHhcCCcEEEecCC
Q psy10859 1 MLVLVLGDLHIPHRT-S-----GLPAKFKKLL----V-PGRIQHILCTGNLVT-------KETFDYLKTLASDVHVVRGD 62 (224)
Q Consensus 1 mki~~isDiH~~~~~-~-----~~~~~l~~~~----~-~~~~D~vi~~GDl~~-------~~~~~~l~~l~~~v~~v~GN 62 (224)
|||++|||+|+.... . +..+.+.+++ + ..++|+|+++||+++ ....+.++++..|+++++||
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v~GN 94 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWLPGN 94 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEeCCC
Confidence 799999999973211 1 1112333332 2 346999999999998 34556677778899999999
Q ss_pred CCCCC---------CCCcc-eEEEeCCEEEEeeecCc---ccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeecc
Q psy10859 63 FDEGT---------SYPEK-KVVTVGQFRIGLCHGHD---IIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHG 129 (224)
Q Consensus 63 HD~~~---------~~~~~-~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~ 129 (224)
||... .+... ..+..++++++++.... ..++...++++|+++.|.. . .++..++++|.
T Consensus 95 HD~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~--~-------~~~~~vv~~hH 165 (275)
T PRK11148 95 HDFQPAMYSALQDAGISPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLAD--A-------PERHTLVLLHH 165 (275)
T ss_pred CCChHHHHHHHhhcCCCccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhh--C-------CCCCeEEEEcC
Confidence 99843 11111 12333456766554321 1123367789999988732 1 12345677776
Q ss_pred CCCCC---------CCCHHHHHHHhhhc-CCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCC-----CCCCeEEE
Q psy10859 130 HDIIP---------WGDPEALALLQRQL-DVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEP-----KVNPSFVL 194 (224)
Q Consensus 130 ~~~~~---------~~~~~~l~~~~~~~-~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~-----~~~~~~~~ 194 (224)
+|... ..+.+.+.++++++ +++++++||+|.......+|+.++.+++.+..+.|... ...++|.+
T Consensus 166 ~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~ 245 (275)
T PRK11148 166 HPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRE 245 (275)
T ss_pred CCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcEEE
Confidence 66432 13456777888786 89999999999998888899988888888865544332 34679999
Q ss_pred EEEe-CCeEEEEEEEeecCceeE
Q psy10859 195 MDIQ-SSNVVTYVYQLIADEVTV 216 (224)
Q Consensus 195 i~~~-~~~~~~~~~~~~~~~~~~ 216 (224)
++++ ++.+.+++.++...++..
T Consensus 246 ~~l~~~g~~~~~~~~~~~~~~~~ 268 (275)
T PRK11148 246 LELHADGSLETEVHRLADTEFLP 268 (275)
T ss_pred EEEcCCCcEEEEEEEcCCCCcCc
Confidence 9996 678999999998766643
No 9
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.93 E-value=1.3e-24 Score=166.97 Aligned_cols=182 Identities=18% Similarity=0.160 Sum_probs=120.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCCh--------HHHHHHHhcCCcEEEecCCCCCCC-----
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTK--------ETFDYLKTLASDVHVVRGDFDEGT----- 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~--------~~~~~l~~l~~~v~~v~GNHD~~~----- 67 (224)
|||+++||+|.+.. .+ +++.+.+++.++|+|+++||+++. +.++.+.+++.|+++|+||||...
T Consensus 5 ~kIl~iSDiHgn~~--~l-e~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~~v~~~l~ 81 (224)
T cd07388 5 RYVLATSNPKGDLE--AL-EKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDAPLWEYLR 81 (224)
T ss_pred eEEEEEEecCCCHH--HH-HHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCChHHHHHHH
Confidence 79999999997432 22 334444456789999999999982 234555566789999999999741
Q ss_pred -CC------Cc-----ceEEEeCC-EEEEeeecCcccC--CCCHHH---HHHHHH-hhcCCCCCCceeeeeCCeEEEeec
Q psy10859 68 -SY------PE-----KKVVTVGQ-FRIGLCHGHDIIP--WGDPEA---LALLQR-QLDGTSYPEKKVVTVGQFRIGLCH 128 (224)
Q Consensus 68 -~~------~~-----~~~~~~~~-~~~~~~~g~~~~~--~~~~~~---~~~l~~-~l~~~~~~~~~~~~~~~~~i~~~H 128 (224)
.+ |. .....+.+ .++..+.|....+ ++..+. .+|+.. .+.. .........|+++|
T Consensus 82 ~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~------~~~~~~~~~VLv~H 155 (224)
T cd07388 82 EAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKA------LWELKDYRKVFLFH 155 (224)
T ss_pred HHhcccccCccceecCCCeEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHH------HHhCCCCCeEEEEC
Confidence 11 11 12344534 6777766643222 111221 123221 1100 00012457899999
Q ss_pred cCCCCC---CCCHHHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeE
Q psy10859 129 GHDIIP---WGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNV 202 (224)
Q Consensus 129 ~~~~~~---~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (224)
.+|... ..+++.+.+++++.++++++|||+| ....+.+++.++|||+.. .+.|+++++++.++
T Consensus 156 ~PP~g~g~~h~GS~alr~~I~~~~P~l~i~GHih-~~~~~~g~t~vvNpg~~~----------~g~~a~i~~~~~~v 221 (224)
T cd07388 156 TPPYHKGLNEQGSHEVAHLIKTHNPLVVLVGGKG-QKHELLGASWVVVPGDLS----------EGRYALLDLRARKL 221 (224)
T ss_pred CCCCCCCCCccCHHHHHHHHHHhCCCEEEEcCCc-eeEEEeCCEEEECCCccc----------CCcEEEEEecCcce
Confidence 988654 4678888899999999999999999 434577999999999977 45899999987654
No 10
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.92 E-value=6.2e-24 Score=166.87 Aligned_cols=189 Identities=19% Similarity=0.219 Sum_probs=132.1
Q ss_pred eEEEEeeccCCCCCC------CChHHHHH---hhcCC--CccEEEEcCCCCC-------hHHHHHHHhcCCcEEEecCCC
Q psy10859 2 LVLVLGDLHIPHRTS------GLPAKFKK---LLVPG--RIQHILCTGNLVT-------KETFDYLKTLASDVHVVRGDF 63 (224)
Q Consensus 2 ki~~isDiH~~~~~~------~~~~~l~~---~~~~~--~~D~vi~~GDl~~-------~~~~~~l~~l~~~v~~v~GNH 63 (224)
||+++||+|.+.... .....+.+ .+++. ++|+|+++||+++ ..+.+.+++++.|+++|+|||
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 799999999865321 11223333 33344 8999999999998 345566777789999999999
Q ss_pred CCCC----CC--------CcceEEEeCCEEEEeeecCcc---cCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeec
Q psy10859 64 DEGT----SY--------PEKKVVTVGQFRIGLCHGHDI---IPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCH 128 (224)
Q Consensus 64 D~~~----~~--------~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H 128 (224)
|... .+ ...+.++.++++++++..... ..+....+++|+++.|... .+...|+++|
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~---------~~~~~il~~H 151 (240)
T cd07402 81 DDRAAMRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEA---------PDKPTLVFLH 151 (240)
T ss_pred CCHHHHHHhhccccccccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhC---------CCCCEEEEEC
Confidence 9853 11 123467788888887754211 1123567888999877321 1456899999
Q ss_pred cCCCCCC---------CCHHHHHHHhhhc-CCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCC-----CCCCeEE
Q psy10859 129 GHDIIPW---------GDPEALALLQRQL-DVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEP-----KVNPSFV 193 (224)
Q Consensus 129 ~~~~~~~---------~~~~~l~~~~~~~-~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~-----~~~~~~~ 193 (224)
.+|.... .+.+.+.++++++ +++++++||+|.......+++.++++||++..|.+... ..++||.
T Consensus 152 ~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~ 231 (240)
T cd07402 152 HPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYR 231 (240)
T ss_pred CCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEECCEEEEEcCcceeeecCCCCcccccccCCCCc
Confidence 7774321 2345666777777 89999999999999999999999999999987654332 3456777
Q ss_pred EEEEeC
Q psy10859 194 LMDIQS 199 (224)
Q Consensus 194 ~i~~~~ 199 (224)
..++-+
T Consensus 232 ~~~~~~ 237 (240)
T cd07402 232 ALSLHE 237 (240)
T ss_pred EEEEec
Confidence 777743
No 11
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.92 E-value=5.8e-23 Score=163.43 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=136.2
Q ss_pred eEEEEeeccCCCCCCC-------Ch------HHHHHhhcCC--CccEEEEcCCCCC----h--------HHHHHHHhc--
Q psy10859 2 LVLVLGDLHIPHRTSG-------LP------AKFKKLLVPG--RIQHILCTGNLVT----K--------ETFDYLKTL-- 52 (224)
Q Consensus 2 ki~~isDiH~~~~~~~-------~~------~~l~~~~~~~--~~D~vi~~GDl~~----~--------~~~~~l~~l-- 52 (224)
+|+++||+|.+..... +. +.+.+.+++. ++|+|+++|||++ . ...+.++++
T Consensus 6 ~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T cd07395 6 YFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDP 85 (262)
T ss_pred EEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccC
Confidence 7999999998642111 11 1222333444 8999999999998 1 233445554
Q ss_pred CCcEEEecCCCCCCC------------CC-CcceEEEeCCEEEEeeecCccc-----CCCCHHHHHHHHHhhcCCCCCCc
Q psy10859 53 ASDVHVVRGDFDEGT------------SY-PEKKVVTVGQFRIGLCHGHDII-----PWGDPEALALLQRQLDGTSYPEK 114 (224)
Q Consensus 53 ~~~v~~v~GNHD~~~------------~~-~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~l~~~l~~~~~~~~ 114 (224)
+.|+++++||||... .+ +..+.+..+++++++++..... +....++++|++++|....
T Consensus 86 ~vp~~~i~GNHD~~~~~~~~~~~~f~~~~g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~---- 161 (262)
T cd07395 86 DIPLVCVCGNHDVGNTPTEESIKDYRDVFGDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAK---- 161 (262)
T ss_pred CCcEEEeCCCCCCCCCCChhHHHHHHHHhCCcceEEEECCEEEEEeccccccCccccccchHHHHHHHHHHHHHHH----
Confidence 579999999999852 11 2234567889998877542211 1234678899998773211
Q ss_pred eeeeeCCeEEEeeccCCCCC-C-----------CCHHHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCC
Q psy10859 115 KVVTVGQFRIGLCHGHDIIP-W-----------GDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFN 182 (224)
Q Consensus 115 ~~~~~~~~~i~~~H~~~~~~-~-----------~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~ 182 (224)
.......++++|.+|... . .....+..+++++++++++|||+|.......+++.++.+++.+..+
T Consensus 162 --~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~~~g~~~~~~~~~~~~~- 238 (262)
T cd07395 162 --ESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGRYGGLEMVVTSAIGAQL- 238 (262)
T ss_pred --hccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceEECCEEEEEcCceeccc-
Confidence 122456789999666321 1 1123566778889999999999999988888999888888888543
Q ss_pred CCCCCCCCeEEEEEEeCCeEEEEEEEe
Q psy10859 183 PLEPKVNPSFVLMDIQSSNVVTYVYQL 209 (224)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~~~~~ 209 (224)
....++|.++++++++++++++++
T Consensus 239 ---~~~~~g~~~~~v~~~~~~~~~~~~ 262 (262)
T cd07395 239 ---GNDKSGLRIVKVTEDKIVHEYYSL 262 (262)
T ss_pred ---CCCCCCcEEEEECCCceeeeeeeC
Confidence 335799999999999999998874
No 12
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.90 E-value=7.9e-22 Score=147.76 Aligned_cols=185 Identities=22% Similarity=0.300 Sum_probs=129.6
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCC--C-------hHH--HHHHHhcCCcEEEecCCCCCCC--
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLV--T-------KET--FDYLKTLASDVHVVRGDFDEGT-- 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~--~-------~~~--~~~l~~l~~~v~~v~GNHD~~~-- 67 (224)
||++++||+|+... .+ .++..+.....+|+++++|||+ + .+. ++.+.+.+.|+++++||-|...
T Consensus 4 mkil~vtDlHg~~~--~~-~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD~~~v~ 80 (226)
T COG2129 4 MKILAVTDLHGSED--SL-KKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCDPPEVI 80 (226)
T ss_pred ceEEEEeccccchH--HH-HHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCChHHHH
Confidence 89999999998542 22 3455555566899999999999 4 222 4566666889999999999774
Q ss_pred -------CCCcceEEEeCCEEEEeeecCcccCCCCH------HHHHHHHHhhcCCCCCCceeeee-CCeEEEeeccCCCC
Q psy10859 68 -------SYPEKKVVTVGQFRIGLCHGHDIIPWGDP------EALALLQRQLDGTSYPEKKVVTV-GQFRIGLCHGHDII 133 (224)
Q Consensus 68 -------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~-~~~~i~~~H~~~~~ 133 (224)
..-......+++..++.+.|....|+.++ +....++..+ ... +..+|+++|++|++
T Consensus 81 ~~l~~~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v----------~~~~~~~~Il~~HaPP~g 150 (226)
T COG2129 81 DVLKNAGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLV----------KKADNPVNILLTHAPPYG 150 (226)
T ss_pred HHHHhcccccccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHH----------hcccCcceEEEecCCCCC
Confidence 11123667888888877655444444321 1122222211 111 11229999999865
Q ss_pred C---------CCCHHHHHHHhhhcCCcEEEECCCCCCc-eEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEE
Q psy10859 134 P---------WGDPEALALLQRQLDVDILISGHTHKFE-AYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVV 203 (224)
Q Consensus 134 ~---------~~~~~~l~~~~~~~~~~~vi~GH~H~~~-~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (224)
. ..++..+.+++.+.++.+.+|||+|... ....+++.++|||+.+ .+.|+++++++..++
T Consensus 151 t~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~~----------~g~yA~i~l~~~~Vk 220 (226)
T COG2129 151 TLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPLG----------EGRYALIELEKEVVK 220 (226)
T ss_pred ccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccccCCeEEECCCCcc----------CceEEEEEecCcEEE
Confidence 2 2356678888889999999999999865 4467999999999977 579999999999777
Q ss_pred EEEEE
Q psy10859 204 TYVYQ 208 (224)
Q Consensus 204 ~~~~~ 208 (224)
.+.+.
T Consensus 221 ~~~~~ 225 (226)
T COG2129 221 LEQFS 225 (226)
T ss_pred EEEec
Confidence 66553
No 13
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.89 E-value=2.4e-22 Score=152.01 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=106.5
Q ss_pred EEEEeeccCCCCCCCChHHHH-HhhcCCCccEEEEcCCCCC------hHHHHHHHhcCCcEEEecCCCCCCCCC------
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFK-KLLVPGRIQHILCTGNLVT------KETFDYLKTLASDVHVVRGDFDEGTSY------ 69 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~-~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~v~~v~GNHD~~~~~------ 69 (224)
|+++||+|++.. .+. ..++..++|+|+++||+++ ...++.+++++.|+++|+||||.....
T Consensus 1 i~~~sD~H~~~~------~~~~~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~~~~~~~~~~ 74 (188)
T cd07392 1 ILAISDIHGDVE------KLEAIILKAEEADAVIVAGDITNFGGKEAAVEINLLLAIGVPVLAVPGNCDTPEILGLLTSA 74 (188)
T ss_pred CEEEEecCCCHH------HHHHHHhhccCCCEEEECCCccCcCCHHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHhhhcC
Confidence 589999998442 222 3445678999999999998 123366777778999999999976411
Q ss_pred ---CcceEEEeCCEEEEeeecCcccCC-----CCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC------
Q psy10859 70 ---PEKKVVTVGQFRIGLCHGHDIIPW-----GDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW------ 135 (224)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~------ 135 (224)
.......+++++++.+.+....++ ...+.+.++ ..+ .....+..|+++|.+|..++
T Consensus 75 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l---------~~~~~~~~ilv~H~pp~~~~~d~~~~ 144 (188)
T cd07392 75 GLNLHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRL---------NNLLAKNLILVTHAPPYGTAVDRVSG 144 (188)
T ss_pred cEecCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhh---------hccCCCCeEEEECCCCcCCcccccCC
Confidence 112345677777776655211111 122333333 111 12234678999998886521
Q ss_pred ---CCHHHHHHHhhhcCCcEEEECCCCCCc-eEEEcCEEEEcCC
Q psy10859 136 ---GDPEALALLQRQLDVDILISGHTHKFE-AYEHENKFYINPG 175 (224)
Q Consensus 136 ---~~~~~l~~~~~~~~~~~vi~GH~H~~~-~~~~~~~~~in~G 175 (224)
.+.+.+.+++++.++++++|||+|.+. ..+.++++++|||
T Consensus 145 ~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 145 GFHVGSKAIRKFIEERQPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred CCccCCHHHHHHHHHhCCcEEEEeccccccceeeeCCeEEecCC
Confidence 256778888888899999999999997 4478999999998
No 14
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.89 E-value=1.7e-21 Score=155.31 Aligned_cols=190 Identities=17% Similarity=0.147 Sum_probs=129.5
Q ss_pred CeEEEEeeccCCCCCC----CC---hHH---HHHhhcCCCccEEEEcCCCCC----------hHHHHHHHhcCCcEEEec
Q psy10859 1 MLVLVLGDLHIPHRTS----GL---PAK---FKKLLVPGRIQHILCTGNLVT----------KETFDYLKTLASDVHVVR 60 (224)
Q Consensus 1 mki~~isDiH~~~~~~----~~---~~~---l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l~~~v~~v~ 60 (224)
.||+++||+|...... .. .+. +.+.+++.++|+|+++||+++ ..+.+.+.+++.|+++++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~ 80 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL 80 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence 4899999999543210 11 112 233344567999999999997 123456667788999999
Q ss_pred CCCCCCCC----C--------C-cceEEEeCCEEEEeeecCcc---------------------------------cCCC
Q psy10859 61 GDFDEGTS----Y--------P-EKKVVTVGQFRIGLCHGHDI---------------------------------IPWG 94 (224)
Q Consensus 61 GNHD~~~~----~--------~-~~~~~~~~~~~~~~~~g~~~---------------------------------~~~~ 94 (224)
||||.... + + ..+.+..++++++++.+... .+..
T Consensus 81 GNHD~~~~~~~~~~~~~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 160 (267)
T cd07396 81 GNHDLYNPSREYLLLYTLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGI 160 (267)
T ss_pred CccccccccHhhhhcccccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcC
Confidence 99998741 1 1 23567778888887776321 1123
Q ss_pred CHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC-------CCHHHHHHHhhh-cCCcEEEECCCCCCceEEE
Q psy10859 95 DPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW-------GDPEALALLQRQ-LDVDILISGHTHKFEAYEH 166 (224)
Q Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~-------~~~~~l~~~~~~-~~~~~vi~GH~H~~~~~~~ 166 (224)
..+++.|++++|... ...+...++++|.++.... .+.+.+.+++++ .+++++++||+|.......
T Consensus 161 ~~~Ql~WL~~~L~~~-------~~~~~~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 233 (267)
T cd07396 161 GEEQLQWLRNELQEA-------DANGEKVIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQR 233 (267)
T ss_pred CHHHHHHHHHHHHHH-------HhcCCeEEEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCcccc
Confidence 467788998876311 0123456888886543211 134556677777 4789999999999998888
Q ss_pred cCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeE
Q psy10859 167 ENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNV 202 (224)
Q Consensus 167 ~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (224)
+|+.++.+||++.. ....+.|.++.+-++++
T Consensus 234 ~gi~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~ 264 (267)
T cd07396 234 HGIHFLTLEGMVET-----PPESNAFGVVIVYEDRL 264 (267)
T ss_pred CCeeEEEechhhcC-----CCCCCceEEEEEeCCce
Confidence 99999999999963 44577999999887654
No 15
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.88 E-value=1.4e-20 Score=156.18 Aligned_cols=215 Identities=15% Similarity=0.158 Sum_probs=129.2
Q ss_pred CeEEEEeeccCCCCCCC------ChHHHHH---hhcCCCccEEEEcCCCCC---------hHHHHHHHh-----------
Q psy10859 1 MLVLVLGDLHIPHRTSG------LPAKFKK---LLVPGRIQHILCTGNLVT---------KETFDYLKT----------- 51 (224)
Q Consensus 1 mki~~isDiH~~~~~~~------~~~~l~~---~~~~~~~D~vi~~GDl~~---------~~~~~~l~~----------- 51 (224)
|||+++||+|++..... ....|.+ .+.++++|+|+++|||+| ..+++.|++
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~~~ 83 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCELE 83 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccchh
Confidence 89999999998653211 1223344 345788999999999999 234445543
Q ss_pred -------------------------cCCcEEEecCCCCCCCCC----C-----c---ceEE---------------EeCC
Q psy10859 52 -------------------------LASDVHVVRGDFDEGTSY----P-----E---KKVV---------------TVGQ 79 (224)
Q Consensus 52 -------------------------l~~~v~~v~GNHD~~~~~----~-----~---~~~~---------------~~~~ 79 (224)
.+.||++|.||||..... + . ...+ ...|
T Consensus 84 ~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~~~~l~lL~~~Glvnifgk~~~~~~i~~~Pvll~kg 163 (405)
T TIGR00583 84 FLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGLLCALDLLHATGLVNYFGKVPEIDNIIVSPILLQKG 163 (405)
T ss_pred hccchhhhcccccccccccccccccCCCCEEEEcCCCCCccccccccHHHHHHhCCCEEEeccccccccceeeeEEEecC
Confidence 367999999999987411 0 0 0000 0111
Q ss_pred EEEEeeecCcccCCCCHHHH-HHHH-HhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECC
Q psy10859 80 FRIGLCHGHDIIPWGDPEAL-ALLQ-RQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGH 157 (224)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~~~-~~l~-~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH 157 (224)
..-+.++| +++..++.+ +.+. ..+.. ..|. ....+.+.|++.|+..............++ ...+|+|+.||
T Consensus 164 ~~~valyG---l~~~~d~rl~~~f~~~~v~~-~~p~--~~~~~~fnIlv~Hq~~~~~~~~~~ipe~ll-p~~fDYValGH 236 (405)
T TIGR00583 164 ETKLALYG---ISNVRDERLVRTFKDNKVSF-LRPN--AGAEDWFNLLVLHQNHAAHTSTSFLPESFI-PDFFDLVIWGH 236 (405)
T ss_pred CeeEEEec---CCCCCHHHHHHHhhccchhh-hccc--cCCCCceEEEEeCceecCCCCcccCchhhh-hccCcEEEecc
Confidence 12224455 444433322 1221 11100 0110 011245689999976422111111112233 45799999999
Q ss_pred CCCCceEE----EcCEEEEcCCCCCCCCCCCC-CCCCCeEEEEEEeCCeEEEEEEEee-cCceeEEEEeecc
Q psy10859 158 THKFEAYE----HENKFYINPGSATGAFNPLE-PKVNPSFVLMDIQSSNVVTYVYQLI-ADEVTVERIDYKK 223 (224)
Q Consensus 158 ~H~~~~~~----~~~~~~in~Gs~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 223 (224)
.|...... .++.++++|||.... .-.. +..+.+|.+++++++.++++++++. ..++...++++++
T Consensus 237 iH~~~~~p~~~~~~~~~V~ypGS~v~t-Sf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l~~ 307 (405)
T TIGR00583 237 EHECLPDPVYNPSDGFYVLQPGSTVAT-SLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILLDK 307 (405)
T ss_pred cccccccccccCCCCceEEECCCcccc-cccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEhhh
Confidence 99976431 235688899997741 1112 2367899999999999999999998 6999999988764
No 16
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.87 E-value=2.5e-21 Score=152.03 Aligned_cols=185 Identities=22% Similarity=0.247 Sum_probs=113.0
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc--CCCccEEEEcCCCCC------------hHHHHHHHhc---CCcEEEecCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV--PGRIQHILCTGNLVT------------KETFDYLKTL---ASDVHVVRGDF 63 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~--~~~~D~vi~~GDl~~------------~~~~~~l~~l---~~~v~~v~GNH 63 (224)
||+++|||+|++.......+.+.+.++ ..++|.|+++||+++ .++.+.++++ +.|+++++|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999986543333345555553 468999999999996 2344444544 57999999999
Q ss_pred CCCC-----------CCCcceEEEeCCEEEEeeecCcccCCCCHHHH---HHHHHhhc---CCCCCCceee---------
Q psy10859 64 DEGT-----------SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEAL---ALLQRQLD---GTSYPEKKVV--------- 117 (224)
Q Consensus 64 D~~~-----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~l~~~l~---~~~~~~~~~~--------- 117 (224)
|... .+++...++++|.++.++||+.. +..+..+. +++++..- ...+|.....
T Consensus 81 D~~~~~~~~~~~g~~~l~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~r~~~r~~~~~~~~~~~p~~~~~~ia~~~~~~ 159 (241)
T PRK05340 81 DFLLGKRFAKAAGMTLLPDPSVIDLYGQRVLLLHGDTL-CTDDKAYQRFRRKVRNPWLQWLFLALPLSIRLRIAAKMRAK 159 (241)
T ss_pred chhhhHHHHHhCCCEEeCCcEEEEECCEEEEEECCccc-ccCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9764 13445567889999999999744 22333322 23322110 0112211100
Q ss_pred ----eeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCceEEEc-C---EEEEcCCCCCCCCCCCCCCCC
Q psy10859 118 ----TVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE-N---KFYINPGSATGAFNPLEPKVN 189 (224)
Q Consensus 118 ----~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~-~---~~~in~Gs~~~~~~~~~~~~~ 189 (224)
...+.. -+ ...+++.+.+.++.++++++++||+|++...... + ..++|.|++.. .
T Consensus 160 s~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lgdw~~---------~ 222 (241)
T PRK05340 160 SKAANQSKSL-EI-------MDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLGDWHE---------Q 222 (241)
T ss_pred HHHhcCCCcc-cc-------cCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeCCCCC---------C
Confidence 000000 01 1123556667777889999999999999765432 2 37899999863 3
Q ss_pred CeEEEEEEeCCeEEEE
Q psy10859 190 PSFVLMDIQSSNVVTY 205 (224)
Q Consensus 190 ~~~~~i~~~~~~~~~~ 205 (224)
.+|. .+++++++..
T Consensus 223 ~~~~--~~~~~~~~~~ 236 (241)
T PRK05340 223 GSVL--KVDADGVELI 236 (241)
T ss_pred CeEE--EEECCceEEE
Confidence 4554 6666665544
No 17
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.86 E-value=2.3e-19 Score=145.01 Aligned_cols=214 Identities=16% Similarity=0.116 Sum_probs=138.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc-CCCccEEEEcCCCCC----------hHHHHHHHhc--CCcEEEecCCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV-PGRIQHILCTGNLVT----------KETFDYLKTL--ASDVHVVRGDFDEGT 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~----------~~~~~~l~~l--~~~v~~v~GNHD~~~ 67 (224)
.||+++||+|.... ...+.+.++.+ ..++|+|+++||+++ ....+.++.+ ..|+++++||||...
T Consensus 5 ~~f~v~gD~~~~~~--~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~ 82 (294)
T cd00839 5 FKFAVFGDMGQNTN--NSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEADY 82 (294)
T ss_pred EEEEEEEECCCCCC--CcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCccccccc
Confidence 37999999997422 22234444443 378999999999995 1233444443 579999999999864
Q ss_pred CC-----------------------CcceEEEeCCEEEEeeecCccc--CCCCHHHHHHHHHhhcCCCCCCceeeeeCCe
Q psy10859 68 SY-----------------------PEKKVVTVGQFRIGLCHGHDII--PWGDPEALALLQRQLDGTSYPEKKVVTVGQF 122 (224)
Q Consensus 68 ~~-----------------------~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 122 (224)
.. +..+.++.++.+++++...... .....++++|+++.|..... .....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~------~~~~~ 156 (294)
T cd00839 83 NFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDR------SKTPW 156 (294)
T ss_pred CCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcc------cCCCe
Confidence 10 1124677888888877653211 13467788999988742111 01234
Q ss_pred EEEeeccCCCCCC----------CCHHHHHHHhhhcCCcEEEECCCCCCceEE----------------EcCEEEEcCCC
Q psy10859 123 RIGLCHGHDIIPW----------GDPEALALLQRQLDVDILISGHTHKFEAYE----------------HENKFYINPGS 176 (224)
Q Consensus 123 ~i~~~H~~~~~~~----------~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~----------------~~~~~~in~Gs 176 (224)
.|+++|.++.... ...+.+..++++++++++++||+|...... .+++.|+..|+
T Consensus 157 ~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~ 236 (294)
T cd00839 157 IIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGA 236 (294)
T ss_pred EEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECC
Confidence 6778885543211 112345677888999999999999875432 25788888888
Q ss_pred CCCCCCCCC-----------CCCCCeEEEEEEeCC-eEEEEEEEeecCceeEEEEeecc
Q psy10859 177 ATGAFNPLE-----------PKVNPSFVLMDIQSS-NVVTYVYQLIADEVTVERIDYKK 223 (224)
Q Consensus 177 ~~~~~~~~~-----------~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 223 (224)
.|....+.. .....+|+++++.+. .+++++++..++ -..++|.+.|
T Consensus 237 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g-~v~D~f~i~k 294 (294)
T cd00839 237 GGNDEGLDPFSAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDG-VVIDSFWIIK 294 (294)
T ss_pred CccccCcCcccCCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCC-eEEEEEEEeC
Confidence 886543211 124579999999876 899999886655 3455666654
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.85 E-value=3.2e-20 Score=144.89 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=107.7
Q ss_pred EEEEeeccCCCCC----CCC-------hHHHHHhhcCC--CccEEEEcCCCCC-------hHHHHHHHhcCCcEEEecCC
Q psy10859 3 VLVLGDLHIPHRT----SGL-------PAKFKKLLVPG--RIQHILCTGNLVT-------KETFDYLKTLASDVHVVRGD 62 (224)
Q Consensus 3 i~~isDiH~~~~~----~~~-------~~~l~~~~~~~--~~D~vi~~GDl~~-------~~~~~~l~~l~~~v~~v~GN 62 (224)
|.++||+|..... ..+ .+++.+.++.. ++|+|+++||+++ .+.++.|+++..|+++|+||
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GN 80 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGN 80 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCC
Confidence 4689999986311 111 12333333333 8999999999997 24455666666689999999
Q ss_pred CCCCC----C----CCc-------ceEEEeCCEEEEeeecCcccC---CC--------------CHHHHHHHHHhhcCCC
Q psy10859 63 FDEGT----S----YPE-------KKVVTVGQFRIGLCHGHDIIP---WG--------------DPEALALLQRQLDGTS 110 (224)
Q Consensus 63 HD~~~----~----~~~-------~~~~~~~~~~~~~~~g~~~~~---~~--------------~~~~~~~l~~~l~~~~ 110 (224)
||++. . +.. .....++++.++.+.+ +..+ +. ....+.|+++.|..
T Consensus 81 HD~~~~~~~~~~~~l~~~~~~~~~n~~~~~~~i~i~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~-- 157 (232)
T cd07393 81 HDYWWGSASKLRKALEESRLALLFNNAYIDDDVAICGTRG-WDNPGNPWPPINETLKVEEDEKIFERELERLELSLKA-- 157 (232)
T ss_pred ccccCCCHHHHHHHHHhcCeEEeccCcEEECCEEEEEEEe-eCCCCCccccccccccchhHHHHHHHHHHHHHHHHHH--
Confidence 99842 0 111 1223445555554322 1111 10 12244566554421
Q ss_pred CCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCce-----EEEcCEEEEcCCCCCCCCCC
Q psy10859 111 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEA-----YEHENKFYINPGSATGAFNP 183 (224)
Q Consensus 111 ~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~-----~~~~~~~~in~Gs~~~~~~~ 183 (224)
.+ .....+.+|+++|++|.....+.+.+...+++.+++++++||+|.+.. ...+|+.|+++.+.+..|.|
T Consensus 158 ~~---~~~~~~~~i~~~H~p~~~~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ 232 (232)
T cd07393 158 AK---KREKEKIKIVMLHYPPANENGDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLNFQP 232 (232)
T ss_pred HH---hCCCCCCEEEEECCCCcCCCCCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcCccC
Confidence 00 001123589999988766555566677777788999999999998854 34789999998888876543
No 19
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.84 E-value=4.4e-20 Score=132.43 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=83.7
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-------hHHHHHHHhcCCc-EEEecCCCCCCCCCCcce
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-------KETFDYLKTLASD-VHVVRGDFDEGTSYPEKK 73 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~l~~~-v~~v~GNHD~~~~~~~~~ 73 (224)
||+++||+|+... .++..++|.++++||+++ ....+.++++..+ +++|+||||....
T Consensus 1 ~i~~isD~H~~~~----------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~~~~----- 65 (135)
T cd07379 1 RFVCISDTHSRHR----------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDLTLD----- 65 (135)
T ss_pred CEEEEeCCCCCCC----------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCCcCC-----
Confidence 6899999997432 123468999999999998 2366777776544 6789999998521
Q ss_pred EEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC--------CCHHHHHHHh
Q psy10859 74 VVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW--------GDPEALALLQ 145 (224)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~--------~~~~~l~~~~ 145 (224)
.++.+++++|++|.... .+.+.+.+++
T Consensus 66 ---------------------------------------------~~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~ 100 (135)
T cd07379 66 ---------------------------------------------PEDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRV 100 (135)
T ss_pred ---------------------------------------------CCCCEEEEECCCCCcCccccccCcccCCHHHHHHH
Confidence 12345777777764421 3345666777
Q ss_pred hhcCCcEEEECCCCCCc-eE----EEcCEEEEcCC
Q psy10859 146 RQLDVDILISGHTHKFE-AY----EHENKFYINPG 175 (224)
Q Consensus 146 ~~~~~~~vi~GH~H~~~-~~----~~~~~~~in~G 175 (224)
++.+++++++||+|.+. .. +.+++.++|++
T Consensus 101 ~~~~~~~~i~GH~H~~~~~~~~~~~~~~t~~in~~ 135 (135)
T cd07379 101 QRVRPKLHVFGHIHEGYGAERVLDTDGETLFVNAS 135 (135)
T ss_pred HHHCCcEEEEcCcCCcCceeEecccCCCEEEEeCC
Confidence 78899999999999997 44 56899999985
No 20
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.84 E-value=2.4e-21 Score=146.68 Aligned_cols=186 Identities=21% Similarity=0.229 Sum_probs=116.9
Q ss_pred EEEeeccCCCCCCCChHHHHHhhcCC--CccEEEEcCCCCC------------hHHHHHHHhc---CCcEEEecCCCCCC
Q psy10859 4 LVLGDLHIPHRTSGLPAKFKKLLVPG--RIQHILCTGNLVT------------KETFDYLKTL---ASDVHVVRGDFDEG 66 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l~~~~~~~--~~D~vi~~GDl~~------------~~~~~~l~~l---~~~v~~v~GNHD~~ 66 (224)
++|||+|++.......+.|.++++.. ++|.++++||+++ .++.+.|..+ +.++|+++||||..
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 47999999755456666777777644 4599999999998 3555555543 78999999999966
Q ss_pred C------------CCCcceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhc-------CCCCCCceeee------eCC
Q psy10859 67 T------------SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLD-------GTSYPEKKVVT------VGQ 121 (224)
Q Consensus 67 ~------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~-------~~~~~~~~~~~------~~~ 121 (224)
. -.|....++..|.++.++||+.+.+.. ....|++..-. ...+|...... ...
T Consensus 81 l~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~--~~y~~~r~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s 158 (237)
T COG2908 81 LGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFCTDD--RAYQWFRYKVHWAWLQLLFLNLPLRVRRRIAYKIRSLS 158 (237)
T ss_pred HHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCcccchH--HHHHHHHHHcccHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 4 235566788999999999997654332 11111111000 01111110000 000
Q ss_pred --eEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeC
Q psy10859 122 --FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQS 199 (224)
Q Consensus 122 --~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~ 199 (224)
.+--+.+ +......+++...+.++..+++.+||||+|++....+++..|+|.|++.. +=++++.++
T Consensus 159 ~~~k~~~~~-~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~lGdW~~-----------~~s~~~v~~ 226 (237)
T COG2908 159 SWAKKKVKK-AVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGDWVS-----------EGSILEVDD 226 (237)
T ss_pred HHhHHhhhh-HHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEecCcchh-----------cceEEEEec
Confidence 0000000 00000123555566777889999999999999999999999999999982 445667776
Q ss_pred CeEE
Q psy10859 200 SNVV 203 (224)
Q Consensus 200 ~~~~ 203 (224)
+...
T Consensus 227 ~~~~ 230 (237)
T COG2908 227 GGLE 230 (237)
T ss_pred CcEE
Confidence 6553
No 21
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.84 E-value=3.4e-20 Score=134.50 Aligned_cols=116 Identities=25% Similarity=0.312 Sum_probs=84.3
Q ss_pred EEEEeeccCCCCCCCChH-------HHHHhhcCCCccEEEEcCCCCC-------hHHHHHHHhcCC---cEEEecCCCCC
Q psy10859 3 VLVLGDLHIPHRTSGLPA-------KFKKLLVPGRIQHILCTGNLVT-------KETFDYLKTLAS---DVHVVRGDFDE 65 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~-------~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~l~~---~v~~v~GNHD~ 65 (224)
|+++||+|++........ .+.+.++..++|+|+++||+++ ....+.++++.. |+++++||||.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD~ 80 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHDV 80 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCeE
Confidence 589999998654322111 1344455778999999999999 234556666644 99999999986
Q ss_pred CCCCCcceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCC-------CH
Q psy10859 66 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWG-------DP 138 (224)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~-------~~ 138 (224)
|+++|.+|..+.. +.
T Consensus 81 ----------------------------------------------------------iv~~Hhp~~~~~~~~~~~~~~~ 102 (144)
T cd07400 81 ----------------------------------------------------------IVVLHHPLVPPPGSGRERLLDA 102 (144)
T ss_pred ----------------------------------------------------------EEEecCCCCCCCccccccCCCH
Confidence 4455544433211 34
Q ss_pred HHHHHHhhhcCCcEEEECCCCCCceEE----EcCEEEEcCCC
Q psy10859 139 EALALLQRQLDVDILISGHTHKFEAYE----HENKFYINPGS 176 (224)
Q Consensus 139 ~~l~~~~~~~~~~~vi~GH~H~~~~~~----~~~~~~in~Gs 176 (224)
+.+.+++++.++++++|||+|.+.... .+++.++|+||
T Consensus 103 ~~~~~~l~~~~~~~~l~GH~H~~~~~~~~~~~~~~~~~~aGs 144 (144)
T cd07400 103 GDALKLLAEAGVDLVLHGHKHVPYVGNISNAGGGLVVIGAGT 144 (144)
T ss_pred HHHHHHHHHcCCCEEEECCCCCcCeeeccCCCCCEEEEecCC
Confidence 457777888899999999999998877 67899999997
No 22
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.84 E-value=1.3e-19 Score=145.38 Aligned_cols=202 Identities=18% Similarity=0.233 Sum_probs=133.0
Q ss_pred CeEEEEeeccCC--CCCCCChHHHHHhhcCCCccEEEEcCCCCC---------h---HHHH-HHHh--cCCcEEEecCCC
Q psy10859 1 MLVLVLGDLHIP--HRTSGLPAKFKKLLVPGRIQHILCTGNLVT---------K---ETFD-YLKT--LASDVHVVRGDF 63 (224)
Q Consensus 1 mki~~isDiH~~--~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~---------~---~~~~-~l~~--l~~~v~~v~GNH 63 (224)
|+|++++|.=.. .....+...+.+++++.++|++|++||++. . +.++ .+.. ++.|+++++|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 689999998753 111123345566666678999999999973 1 1222 2222 367999999999
Q ss_pred CCCCCC-----------------Cc-ceEEEeC------CEEEEeeecCccc--------------CCCCHHHHHHHHHh
Q psy10859 64 DEGTSY-----------------PE-KKVVTVG------QFRIGLCHGHDII--------------PWGDPEALALLQRQ 105 (224)
Q Consensus 64 D~~~~~-----------------~~-~~~~~~~------~~~~~~~~g~~~~--------------~~~~~~~~~~l~~~ 105 (224)
|....+ +. .+.+..+ +++++++...... .....++++|+++.
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~ 160 (277)
T cd07378 81 DYSGNVSAQIDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKT 160 (277)
T ss_pred ccCCCchheeehhccCCCCCccCcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHH
Confidence 987311 11 1234444 5777765543211 11245678899887
Q ss_pred hcCCCCCCceeeeeCCeEEEeeccCCCCCC--C----CHHHHHHHhhhcCCcEEEECCCCCCceEEEc--CEEEEcCCCC
Q psy10859 106 LDGTSYPEKKVVTVGQFRIGLCHGHDIIPW--G----DPEALALLQRQLDVDILISGHTHKFEAYEHE--NKFYINPGSA 177 (224)
Q Consensus 106 l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~--~----~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~--~~~~in~Gs~ 177 (224)
|... ..+.+|+++|.++.... . ..+.+..++++++++++++||.|.......+ ++.++.+|+.
T Consensus 161 L~~~---------~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~ 231 (277)
T cd07378 161 LAAS---------TADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAG 231 (277)
T ss_pred HHhc---------CCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCC
Confidence 7321 12567999996654321 1 1244667788889999999999998877766 8999999887
Q ss_pred CCCCCCCC------------CCCCCeEEEEEEeCCeEEEEEEEeec
Q psy10859 178 TGAFNPLE------------PKVNPSFVLMDIQSSNVVTYVYQLIA 211 (224)
Q Consensus 178 ~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~ 211 (224)
+..+.... .....+|+++++.++++++++++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~~g 277 (277)
T cd07378 232 SKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDADG 277 (277)
T ss_pred cccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEEEECCCC
Confidence 76432221 12458999999999999999987653
No 23
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.84 E-value=3.8e-19 Score=146.01 Aligned_cols=190 Identities=17% Similarity=0.136 Sum_probs=110.7
Q ss_pred CeEEEEeeccCCCCCCC------ChHHH---HHhhcCCCccEEEEcCCCCCh------H--------HHHHHHhcCCcEE
Q psy10859 1 MLVLVLGDLHIPHRTSG------LPAKF---KKLLVPGRIQHILCTGNLVTK------E--------TFDYLKTLASDVH 57 (224)
Q Consensus 1 mki~~isDiH~~~~~~~------~~~~l---~~~~~~~~~D~vi~~GDl~~~------~--------~~~~l~~l~~~v~ 57 (224)
|||+++||+|++..... ....+ .+.++++++|+|+++||++|. . .++.+.+.++|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 99999999998654211 11223 333457899999999999981 1 1234445578999
Q ss_pred EecCCCCCCC------CC--------Ccc------eEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceee
Q psy10859 58 VVRGDFDEGT------SY--------PEK------KVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVV 117 (224)
Q Consensus 58 ~v~GNHD~~~------~~--------~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 117 (224)
+++||||... .. +.. ..+.+++..+. .+||..+.....+...+
T Consensus 81 ~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~~~v~i~g~~i~------~lP~~~~~~~~~~~~~l----------- 143 (340)
T PHA02546 81 VLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEPTTVDFDGCSID------LIPWICKENTEEILEFI----------- 143 (340)
T ss_pred EEccCCCcccccccccCchHHHHhhCCCEEEeCCceEEEECCEEEE------ECCCCCHHHHHHHHHHh-----------
Confidence 9999999752 00 100 11223333322 25676554332221111
Q ss_pred eeCCeEEEeeccCCCC----CC-CCHHHH-HHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCCCCCCe
Q psy10859 118 TVGQFRIGLCHGHDII----PW-GDPEAL-ALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPS 191 (224)
Q Consensus 118 ~~~~~~i~~~H~~~~~----~~-~~~~~l-~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~ 191 (224)
......|++.|..... +. .....+ ...+ .++++++.||+|.+.. .++ +.++||+-.. ...+.+.+.|
T Consensus 144 ~~~~~~ill~H~~v~g~~~~~g~~~~~~~~~~~~--~~fdyvALGHiH~~~~--~~~--i~Y~GSp~~~-sf~E~~~~KG 216 (340)
T PHA02546 144 KNSKSEYCVGHWELNGFYFYKGMKSDHGLDPDFL--KKYKQVWSGHFHTISE--KGN--VTYIGTPYTL-TAGDENDPRG 216 (340)
T ss_pred ccCCCcEEEEeeEEecCcccCCCccccCCChhHh--ccCCEEeecccccCcc--cCC--EEEeCCceee-CccccCCCCe
Confidence 1234578888943211 00 000001 1122 4689999999998753 233 5669998752 2233345799
Q ss_pred EEEEEEeCCeEEEEEEEeecCceeE
Q psy10859 192 FVLMDIQSSNVVTYVYQLIADEVTV 216 (224)
Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~ 216 (224)
|.+++++.++ ++|+++....+..
T Consensus 217 ~~~vd~~~~~--~efip~~~~~~~~ 239 (340)
T PHA02546 217 FWVFDTETHK--LEFIANPTTWHRR 239 (340)
T ss_pred EEEEECCCCc--eEEEeCCCceEEE
Confidence 9999988775 6788887766654
No 24
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.83 E-value=4.5e-20 Score=144.01 Aligned_cols=168 Identities=19% Similarity=0.206 Sum_probs=102.3
Q ss_pred EEEEeeccCCCCCCCChHHHHHhhcC--CCccEEEEcCCCCC------------hHHHHHHH---hcCCcEEEecCCCCC
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLLVP--GRIQHILCTGNLVT------------KETFDYLK---TLASDVHVVRGDFDE 65 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~~~--~~~D~vi~~GDl~~------------~~~~~~l~---~l~~~v~~v~GNHD~ 65 (224)
.+++||+|++.......+.+.+.+.+ .++|.|+++||++| .++.+.++ +.+.|+++|+||||+
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 37899999865432333445554432 37999999999997 12333344 335799999999997
Q ss_pred CC-----------CCCcceEEEeCCEEEEeeecCcccCCCCHHHH---HHHHHhhc---CCCCCCcee--------e---
Q psy10859 66 GT-----------SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEAL---ALLQRQLD---GTSYPEKKV--------V--- 117 (224)
Q Consensus 66 ~~-----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~l~~~l~---~~~~~~~~~--------~--- 117 (224)
.. .+++...++++|.++.++||+.+. ..+..+. +.+++.+- ...+|.... .
T Consensus 81 ~~~~~~~~~~gi~~l~~~~~~~~~g~~ill~HGd~~~-~~d~~y~~~r~~~r~~~~~~~~~~l~~~~r~~l~~~~~~~s~ 159 (231)
T TIGR01854 81 LIGKRFAREAGMTLLPDPSVIDLYGQKVLLMHGDTLC-TDDTAYQAFRAKVHQPWLQRLFLHLPLAVRVKLARKIRAESR 159 (231)
T ss_pred hhhHHHHHHCCCEEECCCEEEEECCEEEEEEcCcccc-CCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 64 124445677899999999997542 2232222 22211100 011111100 0
Q ss_pred --eeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCceEEEc----CEEEEcCCCCCC
Q psy10859 118 --TVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE----NKFYINPGSATG 179 (224)
Q Consensus 118 --~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~----~~~~in~Gs~~~ 179 (224)
+..+...++.+ +++.+.+.++..++++++|||+|++.....+ +..++|.|++..
T Consensus 160 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~~ 219 (231)
T TIGR01854 160 ADKQMKSQDIMDV--------NPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWYR 219 (231)
T ss_pred HhcCCCcchhhCC--------CHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCcc
Confidence 00111122222 3566677777889999999999999877654 678999999873
No 25
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.82 E-value=1.6e-19 Score=141.72 Aligned_cols=164 Identities=18% Similarity=0.184 Sum_probs=101.0
Q ss_pred eEEEEeeccCCCCCCC---ChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhc-CCcEEEecCCCCCCCC----
Q psy10859 2 LVLVLGDLHIPHRTSG---LPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTL-ASDVHVVRGDFDEGTS---- 68 (224)
Q Consensus 2 ki~~isDiH~~~~~~~---~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l-~~~v~~v~GNHD~~~~---- 68 (224)
||+++||+|+...... ..+.+.+.+++.++|+|+++||+++ ...++.+.++ +.|+++++||||+...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD~~~~~~~~ 80 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHDMLKDLTYE 80 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCCCCCCCCHH
Confidence 7999999997432111 1123444455678999999999998 2344445442 4799999999998621
Q ss_pred -CC--------cceEEEe--CCEEEEeeecCccc------------------------CCC------CHHHHHHHHHhhc
Q psy10859 69 -YP--------EKKVVTV--GQFRIGLCHGHDII------------------------PWG------DPEALALLQRQLD 107 (224)
Q Consensus 69 -~~--------~~~~~~~--~~~~~~~~~g~~~~------------------------~~~------~~~~~~~l~~~l~ 107 (224)
+. ......+ ++++++.+.|=... .+. ....++|+++.|.
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 160 (239)
T TIGR03729 81 EIESNDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLN 160 (239)
T ss_pred HHHhccchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHH
Confidence 10 0011123 66777665530000 010 0112344444331
Q ss_pred CCCCCCceeeeeCCeEEEeeccCCCC----------CC------CCHHHHHHHhhhcCCcEEEECCCCCCc-eEEEcCEE
Q psy10859 108 GTSYPEKKVVTVGQFRIGLCHGHDII----------PW------GDPEALALLQRQLDVDILISGHTHKFE-AYEHENKF 170 (224)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~~~H~~~~~----------~~------~~~~~l~~~~~~~~~~~vi~GH~H~~~-~~~~~~~~ 170 (224)
...++..|+++|.+|.. .+ .+.+.+.+++++++++++||||+|... ...+++++
T Consensus 161 ---------~~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~ 231 (239)
T TIGR03729 161 ---------QLDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTT 231 (239)
T ss_pred ---------hcCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEECCEE
Confidence 11245689999987632 11 234667777878899999999999997 55679999
Q ss_pred EEcC
Q psy10859 171 YINP 174 (224)
Q Consensus 171 ~in~ 174 (224)
++|+
T Consensus 232 ~~~~ 235 (239)
T TIGR03729 232 YHNR 235 (239)
T ss_pred EEec
Confidence 9986
No 26
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.82 E-value=2.2e-19 Score=137.18 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=100.8
Q ss_pred CeEEEEeeccCCCCCC---------CChHHHHHhhcCCCccEEEEcCCCCC------------hHHHHHHHhcCCcEEEe
Q psy10859 1 MLVLVLGDLHIPHRTS---------GLPAKFKKLLVPGRIQHILCTGNLVT------------KETFDYLKTLASDVHVV 59 (224)
Q Consensus 1 mki~~isDiH~~~~~~---------~~~~~l~~~~~~~~~D~vi~~GDl~~------------~~~~~~l~~l~~~v~~v 59 (224)
|||+++||+|...... ...+.+.+.++..++|+|+++||+++ .+.++.+.+.+.|++++
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 82 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAAT 82 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6999999999855421 11134566667789999999999998 12233344446899999
Q ss_pred cCCCCCCCCCCcceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCC---C-
Q psy10859 60 RGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP---W- 135 (224)
Q Consensus 60 ~GNHD~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~---~- 135 (224)
+||||. ..+...+.+.|+++.+.. ... ........++++|.+|... +
T Consensus 83 ~GNHD~-------------------------~g~l~~~ql~wL~~~l~~--~~~--~~~~~~~~l~f~H~P~~~~~~~~~ 133 (199)
T cd07383 83 FGNHDG-------------------------YDWIRPSQIEWFKETSAA--LKK--KYGKPIPSLAFFHIPLPEYREVWE 133 (199)
T ss_pred CccCCC-------------------------CCCCCHHHHHHHHHHHHH--Hhh--ccCCCCcceEEEecChHHHHhhhc
Confidence 999992 235667788899887632 100 0112245788999655211 1
Q ss_pred -----------------CCHHHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 136 -----------------GDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 136 -----------------~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
.+.+.+..+.+..+++++++||+|.+......+...+|+|+.++
T Consensus 134 ~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g 194 (199)
T cd07383 134 GKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTG 194 (199)
T ss_pred ccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCC
Confidence 12223445557789999999999998766656666799999874
No 27
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.82 E-value=4.6e-19 Score=132.63 Aligned_cols=183 Identities=19% Similarity=0.236 Sum_probs=108.4
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC--------h--------------------------HHHH
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT--------K--------------------------ETFD 47 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--------~--------------------------~~~~ 47 (224)
|++.|||.|... ++.+.+.+.+.+.++|+|+++||+.. . .+++
T Consensus 7 kilA~s~~~g~~---e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~ 83 (255)
T PF14582_consen 7 KILAISNFRGDF---ELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFR 83 (255)
T ss_dssp EEEEEE--TT-H---HHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHH
T ss_pred hheeecCcchHH---HHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHH
Confidence 789999999743 34456777777789999999999985 1 4455
Q ss_pred HHHhcCCcEEEecCCCCCCC------------CCCcc-----eEEEeCC-EEEEeeecCcccCCC--CHH---HHHHHHH
Q psy10859 48 YLKTLASDVHVVRGDFDEGT------------SYPEK-----KVVTVGQ-FRIGLCHGHDIIPWG--DPE---ALALLQR 104 (224)
Q Consensus 48 ~l~~l~~~v~~v~GNHD~~~------------~~~~~-----~~~~~~~-~~~~~~~g~~~~~~~--~~~---~~~~l~~ 104 (224)
.|..+++|+++||||||... -+|.. .++...| +.++.+.|. +.... ... +-.|-..
T Consensus 84 ~L~~~~~p~~~vPG~~Dap~~~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGe-I~~~~~~~~~~LrYP~weae 162 (255)
T PF14582_consen 84 ILGELGVPVFVVPGNMDAPERFFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGE-ITDDQREEEFKLRYPAWEAE 162 (255)
T ss_dssp HHHCC-SEEEEE--TTS-SHHHHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SE-EESSS-BCSSS-EEEHHHHH
T ss_pred HHHhcCCcEEEecCCCCchHHHHHHHHhccceeccceeeeeeeecccCCcEEEEecCcc-ccCCCccccccccchHHHHH
Confidence 67777899999999999964 12222 2344454 555544441 10010 000 0111111
Q ss_pred -hhcCCCCCCceeeee-CCeEEEeeccCCCC----CCCCHHHHHHHhhhcCCcEEEECCCCCCce-EEEcCEEEEcCCCC
Q psy10859 105 -QLDGTSYPEKKVVTV-GQFRIGLCHGHDII----PWGDPEALALLQRQLDVDILISGHTHKFEA-YEHENKFYINPGSA 177 (224)
Q Consensus 105 -~l~~~~~~~~~~~~~-~~~~i~~~H~~~~~----~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~-~~~~~~~~in~Gs~ 177 (224)
.+ +..... ....|+++|.+|.. ...+++.+..+++++++++++|||.|.... ..++.+.++||||+
T Consensus 163 y~l-------k~l~elk~~r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL 235 (255)
T PF14582_consen 163 YSL-------KFLRELKDYRKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHGKESLGKTLVVNPGSL 235 (255)
T ss_dssp HHH-------GGGGGCTSSEEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE--EEETTEEEEE--BG
T ss_pred HHH-------HHHHhcccccEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEecccccchhhHHhCCEEEecCccc
Confidence 01 111111 44679999988821 235678899999999999999999998764 46799999999999
Q ss_pred CCCCCCCCCCCCCeEEEEEEeCCeEEEE
Q psy10859 178 TGAFNPLEPKVNPSFVLMDIQSSNVVTY 205 (224)
Q Consensus 178 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 205 (224)
. .+.|++|++.+.++...
T Consensus 236 ~----------~G~yAvI~l~~~~v~~g 253 (255)
T PF14582_consen 236 A----------EGDYAVIDLEQDKVEFG 253 (255)
T ss_dssp G----------GTEEEEEETTTTEEEEE
T ss_pred c----------cCceeEEEecccccccC
Confidence 9 47999999999988653
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.81 E-value=8.1e-19 Score=136.20 Aligned_cols=169 Identities=20% Similarity=0.271 Sum_probs=99.9
Q ss_pred eEEEEeeccCCCCCCCC------------hHHHHHhhcCCCccEEEEcCCCCC---------hHHHHHHHhc---CCcEE
Q psy10859 2 LVLVLGDLHIPHRTSGL------------PAKFKKLLVPGRIQHILCTGNLVT---------KETFDYLKTL---ASDVH 57 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~------------~~~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l---~~~v~ 57 (224)
||+++||+|++...... .+.+.+.+++.++|+|+++||+++ ..+.+.++++ +.|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 79999999986532111 123333445778999999999998 2345556555 68999
Q ss_pred EecCCCCCCCCCCc---------ce------------EEEeCCEEEEeeecCcccCCCCHHHHH-HHHHhhcCCCCCCce
Q psy10859 58 VVRGDFDEGTSYPE---------KK------------VVTVGQFRIGLCHGHDIIPWGDPEALA-LLQRQLDGTSYPEKK 115 (224)
Q Consensus 58 ~v~GNHD~~~~~~~---------~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~-~l~~~l~~~~~~~~~ 115 (224)
+++||||....... .. ....++..+ .+.| .++....... .+.. +. . ...
T Consensus 81 ~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~i~g---~~~~~~~~~~~~~~~-~~--~--~~~ 151 (223)
T cd00840 81 IIAGNHDSPSRLGALSPLLALSGLHLVGVEEDVLTPLLLPKGGTGV-AIYG---LPYLRRSRLRDLLAD-AE--L--RPR 151 (223)
T ss_pred EecCCCCCccccccccchHhhCcEEEEcccCcceeEEEeccCCeEE-EEEE---CCCCCHHHHHHHHHH-HH--H--Hhh
Confidence 99999998852111 00 011112121 2334 3444332211 1110 00 0 000
Q ss_pred eeeeCCeEEEeeccCCCCCCCCH----HHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 116 VVTVGQFRIGLCHGHDIIPWGDP----EALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 116 ~~~~~~~~i~~~H~~~~~~~~~~----~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
....+..+|+++|++........ +.....+...+++++++||+|.+.....++..+++|||+..
T Consensus 152 ~~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~ypGS~~~ 219 (223)
T cd00840 152 PLDPDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQIILGGGPPIVYPGSPEG 219 (223)
T ss_pred ccCCCCcEEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCeeecCCCceEEeCCCccc
Confidence 11235678999997754322111 11222344678999999999999887778899999999884
No 29
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.79 E-value=1.7e-18 Score=133.51 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=49.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC--hHHHHHHHhcCCcEEEecCCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT--KETFDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
+||+++||+|.... ....+.++..++|+|+++||+++ .+.++.++++..|+++|+||||++.
T Consensus 1 ~rIa~isDiHg~~~-----~~~~~~l~~~~pD~Vl~~GDi~~~~~~~~~~l~~l~~p~~~V~GNHD~~~ 64 (238)
T cd07397 1 LRIAIVGDVHGQWD-----LEDIKALHLLQPDLVLFVGDFGNESVQLVRAISSLPLPKAVILGNHDAWY 64 (238)
T ss_pred CEEEEEecCCCCch-----HHHHHHHhccCCCEEEECCCCCcChHHHHHHHHhCCCCeEEEcCCCcccc
Confidence 58999999997432 12234556678999999999998 6777888887789999999999875
No 30
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.79 E-value=6.5e-18 Score=130.27 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=101.8
Q ss_pred CeEEEEeeccCCCCCCCChH-------HHHHhhcCCCccEEEEcCCCCC--------h---HHHHHHHhcCCcEEEecCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPA-------KFKKLLVPGRIQHILCTGNLVT--------K---ETFDYLKTLASDVHVVRGD 62 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~-------~l~~~~~~~~~D~vi~~GDl~~--------~---~~~~~l~~l~~~v~~v~GN 62 (224)
++|+++||+|.... ..++ .+.+.+++.++|+|+++||+++ . +.++.|++.+.|+++++||
T Consensus 1 f~~~~~~D~q~~~~--~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GN 78 (214)
T cd07399 1 FTLAVLPDTQYYTE--SYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGN 78 (214)
T ss_pred CEEEEecCCCcCCc--CCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 48999999997433 2222 2333344678999999999998 1 3344444335899999999
Q ss_pred CCCCCCCCcceEEEeCCEEEEeeecCcccCC-CCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCC--C----
Q psy10859 63 FDEGTSYPEKKVVTVGQFRIGLCHGHDIIPW-GDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP--W---- 135 (224)
Q Consensus 63 HD~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~--~---- 135 (224)
||... + ..+ ...++++|+++.|.. ..+...|+++|.++... +
T Consensus 79 HD~~~-------------------~---ld~~~~~~ql~WL~~~L~~---------~~~~~~iv~~H~p~~~~~~~~~~~ 127 (214)
T cd07399 79 HDLVL-------------------A---LEFGPRDEVLQWANEVLKK---------HPDRPAILTTHAYLNCDDSRPDSI 127 (214)
T ss_pred Ccchh-------------------h---CCCCCCHHHHHHHHHHHHH---------CCCCCEEEEecccccCCCCcCccc
Confidence 99321 1 111 257788999988731 11345788999665321 1
Q ss_pred -------CCHHHHHHHhhhc-CCcEEEECCCCCCceEEEcCEEEEcCCCCC----CCCCCCCCCCCCeEEEEEEeCCe
Q psy10859 136 -------GDPEALALLQRQL-DVDILISGHTHKFEAYEHENKFYINPGSAT----GAFNPLEPKVNPSFVLMDIQSSN 201 (224)
Q Consensus 136 -------~~~~~l~~~~~~~-~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~----~~~~~~~~~~~~~~~~i~~~~~~ 201 (224)
.+.+.+.++++++ +++++++||.|........++ -..|... ..++....++.+.|.+++++.+.
T Consensus 128 ~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~~~--~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~ 203 (214)
T cd07399 128 DYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTLVSV--GDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDN 203 (214)
T ss_pred ccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEEccc--CCCCCEeeEEeecccCCCCCCcceEEEEEEecCC
Confidence 1123466777766 799999999999876654111 0011111 01112223457889999998653
No 31
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.78 E-value=3.3e-18 Score=143.39 Aligned_cols=211 Identities=18% Similarity=0.127 Sum_probs=113.4
Q ss_pred CeEEEEeeccCCC-CC--CCCh----H---HHHHhhcCCCccEEEEcCCCCC---------hHHHHHHHhc---CCcEEE
Q psy10859 1 MLVLVLGDLHIPH-RT--SGLP----A---KFKKLLVPGRIQHILCTGNLVT---------KETFDYLKTL---ASDVHV 58 (224)
Q Consensus 1 mki~~isDiH~~~-~~--~~~~----~---~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l---~~~v~~ 58 (224)
|||+|+||+|++. .. .... . .+.+.+.+.++|+|+++||+|| ..+.+.++++ ++|+|+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 9999999999983 21 1111 1 2334445889999999999999 3444455544 589999
Q ss_pred ecCCCCCCCCCCc---------ceEEEeCC------------EEEEeeecCc---c-cCCCCHHHHHHHHHhhcCCCCCC
Q psy10859 59 VRGDFDEGTSYPE---------KKVVTVGQ------------FRIGLCHGHD---I-IPWGDPEALALLQRQLDGTSYPE 113 (224)
Q Consensus 59 v~GNHD~~~~~~~---------~~~~~~~~------------~~~~~~~g~~---~-~~~~~~~~~~~l~~~l~~~~~~~ 113 (224)
|+||||....... .......+ .....+.+.. . ..........+....+ ......
T Consensus 81 I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 159 (390)
T COG0420 81 IAGNHDSPSRLSEASPLLLLNNLGLHGVVGRLVHEIRPPEIVAAPWLIPGPDPDVVFFLGLNGLEKEQFELLL-HKGLLS 159 (390)
T ss_pred ecCCCCchhccccccchHHHHcCCceeecccceecccccchhcceeeeccCCCcceeeeccCCchHHHHHHHH-hHhHHh
Confidence 9999998751110 00111111 1111111100 0 0000000011111111 000000
Q ss_pred ceeeeeCCeEEEeeccCCC----CCCCC--HHHH-HHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCC
Q psy10859 114 KKVVTVGQFRIGLCHGHDI----IPWGD--PEAL-ALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEP 186 (224)
Q Consensus 114 ~~~~~~~~~~i~~~H~~~~----~~~~~--~~~l-~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~ 186 (224)
..... ....|++.|++.. ..... .... ...+....++++..||+|.+.........+.+|||+... .....
T Consensus 160 ~~~~~-~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvALGHiH~~~~~~~~~~~i~y~GS~~~~-~f~E~ 237 (390)
T COG0420 160 ALDPD-DDPSILVLHQSIDALTSGAERDLALGTVDLSLLPKGGFDYVALGHIHKRQVIPKEDPPIVYPGSPERY-SFGEE 237 (390)
T ss_pred hcCCc-cCceeeehhhhhcccccCCccceEEcccccccccCCCcceEEcCCcccccccCCCCCceecCCCceec-chhHc
Confidence 00011 4678999998521 11100 0000 122222338999999999998877665555799999853 33455
Q ss_pred CCCCeEEEEEEeCCeEEEEEEEeecCcee
Q psy10859 187 KVNPSFVLMDIQSSNVVTYVYQLIADEVT 215 (224)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 215 (224)
+...++.+++++++. .+.+..+.-..+.
T Consensus 238 ~~~k~~~~v~~~~~~-~~~~~~~~~~~~~ 265 (390)
T COG0420 238 GERKGVVLVEFSGGK-LWRFEELFVPLFE 265 (390)
T ss_pred CCcccEEEEEecCCc-eeeeccccccccC
Confidence 668888899999986 5555555544333
No 32
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.78 E-value=2.3e-18 Score=127.83 Aligned_cols=141 Identities=17% Similarity=0.115 Sum_probs=84.0
Q ss_pred EEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC----hHHHH--HHHhcCCcEEEecCCCCCCCCCCcceEEE
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT----KETFD--YLKTLASDVHVVRGDFDEGTSYPEKKVVT 76 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~--~l~~l~~~v~~v~GNHD~~~~~~~~~~~~ 76 (224)
|+++||+|..... ....+.+.....++|+|+++||+++ .+... .......|+++|+||||+.
T Consensus 1 ~~~iSDlH~~~~~--~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~~~~~~~~~~~v~~v~GNHD~~---------- 68 (166)
T cd07404 1 IQYLSDLHLEFED--NLADLLNFPIAPDADILVLAGDIGYLTDAPRFAPLLLALKGFEPVIYVPGNHEFY---------- 68 (166)
T ss_pred CceEccccccCcc--ccccccccCCCCCCCEEEECCCCCCCcchHHHHHHHHhhcCCccEEEeCCCcceE----------
Confidence 5799999985532 1122223345678999999999998 11211 2223357999999999996
Q ss_pred eCCEEEEeeecCcccCCCCHHH--HHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCC---C------CC---HHHHH
Q psy10859 77 VGQFRIGLCHGHDIIPWGDPEA--LALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP---W------GD---PEALA 142 (224)
Q Consensus 77 ~~~~~~~~~~g~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~---~------~~---~~~l~ 142 (224)
.++.... .|++... .+..+..+ .++ .+..++++|.+|... + .+ .+.+.
T Consensus 69 ---~~~~G~~-----~w~~~~~~~~~~~~~~~--~d~--------~~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~ 130 (166)
T cd07404 69 ---VRIIGTT-----LWSDISLFGEAAARMRM--NDF--------RGKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLD 130 (166)
T ss_pred ---EEEEeee-----cccccCccchHHHHhCC--CCC--------CCCEEEEeCCCCCccccCccccCCCcchhhhhccH
Confidence 2222111 1322110 01111111 111 157899999877431 1 11 12244
Q ss_pred HHhhhcCCcEEEECCCCCCceEEEcCEEEEc
Q psy10859 143 LLQRQLDVDILISGHTHKFEAYEHENKFYIN 173 (224)
Q Consensus 143 ~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in 173 (224)
++++..++++++|||+|++.....+++.++.
T Consensus 131 ~~~~~~~v~~~i~GH~H~~~~~~~~g~~~~~ 161 (166)
T cd07404 131 DLILADPIDLWIHGHTHFNFDYRIGGTRVLS 161 (166)
T ss_pred hHHhhcCCCEEEECCccccceEEECCEEEEe
Confidence 5556779999999999999888888876553
No 33
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.78 E-value=1e-17 Score=133.59 Aligned_cols=67 Identities=25% Similarity=0.287 Sum_probs=47.6
Q ss_pred CeEEEEeeccCCCCCC-CChHHHHHhhcCCCccEEEEcCCCCC-------hHHHHHHHhcC--CcEEEecCCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTS-GLPAKFKKLLVPGRIQHILCTGNLVT-------KETFDYLKTLA--SDVHVVRGDFDEGT 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~-~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~l~--~~v~~v~GNHD~~~ 67 (224)
|||+++||+|.+.... ...+.+.+.+++.++|+|+++||+++ .+..+.++++. .|+|+|+||||+..
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~ 126 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPV 126 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCccc
Confidence 7999999999853211 11123444456789999999999997 23445555553 69999999999863
No 34
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.77 E-value=6.3e-18 Score=129.82 Aligned_cols=165 Identities=20% Similarity=0.243 Sum_probs=95.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc-CCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCCCC-CCcce
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV-PGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEGTS-YPEKK 73 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~~~-~~~~~ 73 (224)
+||+++||+|++.. .+.+ +.+.+. ..++|.++++||+++ .++++.+++ .++++|+||||.... .....
T Consensus 1 ~ri~~isDiHg~~~--~l~~-~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe~~~~~~~~~~ 75 (207)
T cd07424 1 GRDFVVGDIHGHYS--LLQK-ALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHEQMAIDALRAE 75 (207)
T ss_pred CCEEEEECCCCCHH--HHHH-HHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCChHHHHhHhhCC
Confidence 58999999998542 2222 222233 346999999999999 566666665 368999999998641 10000
Q ss_pred EEEeCCEEEEeeec-CcccCCCCHH----HHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCC-CC--------CHH
Q psy10859 74 VVTVGQFRIGLCHG-HDIIPWGDPE----ALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP-WG--------DPE 139 (224)
Q Consensus 74 ~~~~~~~~~~~~~g-~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~-~~--------~~~ 139 (224)
.. . .......+ .+........ ...|+ ..+|.......++.+++++|+.+... .. .+.
T Consensus 76 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~~~~~~~~~ 146 (207)
T cd07424 76 PL--D-AVRWLANGGEWFLDLPDEELRRWLALKL------EQLPLAIEVETEGGKVGIVHADYPSDDWSDGVGAVTLRPE 146 (207)
T ss_pred Cc--c-hhHHHhcCCeehhhcChHHHHHHHHHHH------HhCCeEEEEEeCCCEEEEECCCCCcchhhhhhhccccCcc
Confidence 00 0 00000011 1111111111 22233 35776666666677899999854211 00 000
Q ss_pred ----------HHHHH-hh-hcCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 140 ----------ALALL-QR-QLDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 140 ----------~l~~~-~~-~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
.+... .. ..+++++++||+|.+.....++..++||||+..
T Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~iV~GHTh~~~~~~~~~~i~ID~Gsv~g 198 (207)
T cd07424 147 DIEELLWSRTRIQKAQTQPIKGVDAVVHGHTPVKRPLRLGNVLYIDTGAVFD 198 (207)
T ss_pred cceeeeeccchhhhcCccccCCCCEEEECCCCCCcceEECCEEEEECCCCCC
Confidence 01000 11 124589999999999988889999999999884
No 35
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.77 E-value=8e-17 Score=125.12 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=49.8
Q ss_pred CeEEEEeeccCCCCCC-CChHHHHHhhcCCCccEEEEcCCCCC------hHHHHHHHhc--CCcEEEecCCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTS-GLPAKFKKLLVPGRIQHILCTGNLVT------KETFDYLKTL--ASDVHVVRGDFDEGT 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~-~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l--~~~v~~v~GNHD~~~ 67 (224)
|||+++||+|...... ...+.+.+.+++.++|+++++||+++ ....+.++++ ..|+++++||||+..
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYS 77 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCccccc
Confidence 8999999999865421 11234555556778999999999999 1455566665 369999999999875
No 36
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.77 E-value=1.4e-18 Score=134.42 Aligned_cols=172 Identities=26% Similarity=0.222 Sum_probs=97.9
Q ss_pred EEEeeccCCCCCCCChHHHHHhhcC---CCccEEEEcCCCCC-------------hHH-HHHHH--hcCCcEEEecCCCC
Q psy10859 4 LVLGDLHIPHRTSGLPAKFKKLLVP---GRIQHILCTGNLVT-------------KET-FDYLK--TLASDVHVVRGDFD 64 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l~~~~~~---~~~D~vi~~GDl~~-------------~~~-~~~l~--~l~~~v~~v~GNHD 64 (224)
++|||+|++.........+...+.. .++|.|+++||++| .+. ...++ ..+.++++++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 4899999876543332233333322 58999999999998 011 22222 23679999999999
Q ss_pred CCCC-----------CCcce-EEEeCCEEEEeeecCcccCCCCHHHHHHHHHhh-------cCCCCCCceeeeeCCeEEE
Q psy10859 65 EGTS-----------YPEKK-VVTVGQFRIGLCHGHDIIPWGDPEALALLQRQL-------DGTSYPEKKVVTVGQFRIG 125 (224)
Q Consensus 65 ~~~~-----------~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l-------~~~~~~~~~~~~~~~~~i~ 125 (224)
.... .+... .++.+|.++.+.||+...++... ..++...+ ....++.............
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~HG~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (217)
T cd07398 81 FLLGDFFAEELGLILLPDPLVHLELDGKRILLEHGDQFDTDDRA--YQLLRRLGRNPYDQLLFLNRPLNRRRGIAGGLRW 158 (217)
T ss_pred HHHHhHHHHHcCCEEeccceEEEeeCCeEEEEECCCcCchhHHH--HHHHHHHhCcHHHHHHHhcchHHHHHHHHHhhhh
Confidence 8751 22233 57889999999999654332211 11111110 0011111110000000000
Q ss_pred ----eeccCC---CCCCCCHHHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCC
Q psy10859 126 ----LCHGHD---IIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 177 (224)
Q Consensus 126 ----~~H~~~---~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~ 177 (224)
..+... ......++.+..+++..+++++++||+|.+.....+++.|+|+||+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~n~G~W 217 (217)
T cd07398 159 SSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHELDGKLYINLGDW 217 (217)
T ss_pred hhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEEECCEEEEECCCC
Confidence 000000 0001123344555677899999999999999999999999999986
No 37
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.77 E-value=1.6e-17 Score=139.05 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=114.7
Q ss_pred CeEEEEeeccCCCCC--CCC-------hHHHHHhhcCCCccEEEEcCCCCCh------------HHHHHHHhcCCcEEEe
Q psy10859 1 MLVLVLGDLHIPHRT--SGL-------PAKFKKLLVPGRIQHILCTGNLVTK------------ETFDYLKTLASDVHVV 59 (224)
Q Consensus 1 mki~~isDiH~~~~~--~~~-------~~~l~~~~~~~~~D~vi~~GDl~~~------------~~~~~l~~l~~~v~~v 59 (224)
|||+++||+|++... ... .+.+.+.++++++|+|+++||++|. +.+..|.+.++|+++|
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I 80 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVL 80 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 999999999986432 111 1234455568899999999999981 1223344557899999
Q ss_pred cCCCCCCCCCC---------------------cceEEEeC---CEEEEeeecCcccCCCCHHHHH---------------
Q psy10859 60 RGDFDEGTSYP---------------------EKKVVTVG---QFRIGLCHGHDIIPWGDPEALA--------------- 100 (224)
Q Consensus 60 ~GNHD~~~~~~---------------------~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~--------------- 100 (224)
+||||....+. ....+.+. |...+.+.+ +|+..+....
T Consensus 81 ~GNHD~~~~l~~~~~~l~~~gi~vl~~~~~~~~~~~v~l~~~~g~~~~~i~~---lPy~~~~~~~~~~~~~~~~~~~~~~ 157 (407)
T PRK10966 81 AGNHDSVATLNESRDLLAFLNTTVIASASDDLGHQVIILPRRDGTPGAVLCA---IPFLRPRDVITSQAGQSGIEKQQAL 157 (407)
T ss_pred cCCCCChhhhhhHHHHHHHCCcEEEecccccCCcceEEEecCCCCeeeEEEE---CCCCCHHHHhhhhccCChhHHHHHH
Confidence 99999864110 00011111 101011222 4665443221
Q ss_pred --HHHHhhcC--CCCC-CceeeeeCCeEEEeeccCCCCCC-CCH---------HHH-HHHhhhcCCcEEEECCCCCCceE
Q psy10859 101 --LLQRQLDG--TSYP-EKKVVTVGQFRIGLCHGHDIIPW-GDP---------EAL-ALLQRQLDVDILISGHTHKFEAY 164 (224)
Q Consensus 101 --~l~~~l~~--~~~~-~~~~~~~~~~~i~~~H~~~~~~~-~~~---------~~l-~~~~~~~~~~~vi~GH~H~~~~~ 164 (224)
++...+.. .... .......+...|++.|.+..+.. .+. +.+ ...+ .++||+..||+|++...
T Consensus 158 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~I~~aH~~v~g~~~~~sEr~~~vGg~~~v~~~~f--~~~dYvALGHlH~~Q~v 235 (407)
T PRK10966 158 QAAIADHYQQLYQLACELRDELGQPLPIIATGHLTTVGASKSDSVRDIYIGTLDAFPAQAF--PPADYIALGHIHRAQKV 235 (407)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeEEEcCCcccCCeeEeeecCCceecHHHC--CccCeeeccccccCcCC
Confidence 11110000 0000 00001123457999996543221 111 111 1122 25899999999999765
Q ss_pred EEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCC-eEEEEEEEeec-CceeE
Q psy10859 165 EHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSS-NVVTYVYQLIA-DEVTV 216 (224)
Q Consensus 165 ~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~-~~~~~ 216 (224)
. +...+.++||+-. +.....+...++.+++++.+ .++++.+++.. .++..
T Consensus 236 ~-~~~~vrYsGSpl~-~sFsE~~~~K~v~lVel~~~~~~~v~~i~l~~~~~l~~ 287 (407)
T PRK10966 236 G-GTEHIRYSGSPIP-LSFDELGKSKSVHLVEFDQGKLQSVTPLPVPVFQPMAV 287 (407)
T ss_pred C-CCCcEEEcCCCCC-CCccccCCCCeEEEEEEcCCccceEEEEECCCCceeEE
Confidence 2 2234566999884 12233345689999999854 57888888874 44443
No 38
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.75 E-value=2.7e-18 Score=132.59 Aligned_cols=166 Identities=15% Similarity=0.174 Sum_probs=97.3
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhc-CCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCCCC--CCcce
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLV-PGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEGTS--YPEKK 73 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~~~--~~~~~ 73 (224)
|+++|||+|++.. .+.+.+.+ ++ ..++|.++++||+++ .++++.+++ ..+++|.||||.+.. +...
T Consensus 16 ri~visDiHg~~~--~l~~~l~~-~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~~~~~~~~~~- 89 (218)
T PRK09968 16 HIWVVGDIHGEYQ--LLQSRLHQ-LSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEAMALDAFETG- 89 (218)
T ss_pred eEEEEEeccCCHH--HHHHHHHh-cCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHHHHHHHHhcC-
Confidence 7899999998543 33333333 33 457999999999999 577777765 368899999998641 1000
Q ss_pred EEEeCCEEEEeeec-CcccCCCCHHHHHHHHHhhcC-CCCCCceeeeeCCeEEEeeccCC-CCCCC---C---------H
Q psy10859 74 VVTVGQFRIGLCHG-HDIIPWGDPEALALLQRQLDG-TSYPEKKVVTVGQFRIGLCHGHD-IIPWG---D---------P 138 (224)
Q Consensus 74 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~i~~~H~~~-~~~~~---~---------~ 138 (224)
......-+| .+..... .+........+.+ ..+|.......++.+++++|+.+ ..... . .
T Consensus 90 -----~~~~~~~~gg~~~~~l~-~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r 163 (218)
T PRK09968 90 -----DGNMWLASGGDWFFDLN-DSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDEYDFGKEIAESELLWPV 163 (218)
T ss_pred -----ChhHHHHccCHHHhcCC-HHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCchhhhccccchhhceeCc
Confidence 000000011 1111111 1111111111111 46777777777777889999874 21100 0 0
Q ss_pred HHHHHHhh-----hcCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 139 EALALLQR-----QLDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 139 ~~l~~~~~-----~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
+.+....+ ..+.+++++||||.+.....++..++||||+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~vv~GHTh~~~~~~~~~~i~IDtGs~~g 209 (218)
T PRK09968 164 DRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPKS 209 (218)
T ss_pred HHHhhCccccccccCCCCEEEECCCCcCcceeECCEEEEECCCCCC
Confidence 11211111 135689999999999998889999999999763
No 39
>PLN02533 probable purple acid phosphatase
Probab=99.74 E-value=1.1e-15 Score=128.90 Aligned_cols=212 Identities=15% Similarity=0.131 Sum_probs=135.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC--------hHHHHHHHhc--CCcEEEecCCCCCCC---
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT--------KETFDYLKTL--ASDVHVVRGDFDEGT--- 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--------~~~~~~l~~l--~~~v~~v~GNHD~~~--- 67 (224)
.||++++|++... +.....+.+++.++|+|+++||+++ ....+.++.+ ..|++.++||||...
T Consensus 140 ~~f~v~GDlG~~~----~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~ 215 (427)
T PLN02533 140 IKFAVSGDLGTSE----WTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPI 215 (427)
T ss_pred eEEEEEEeCCCCc----ccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCcccccccccc
Confidence 3799999998532 2223334445678999999999997 1233334433 479999999999741
Q ss_pred -------------CCC---------cceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEE
Q psy10859 68 -------------SYP---------EKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIG 125 (224)
Q Consensus 68 -------------~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~ 125 (224)
.+| ..+.++.++..++++...... ....++.+||+++|...+ .......|+
T Consensus 216 ~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~-~~~~~Q~~WLe~dL~~~~------r~~~pwiIv 288 (427)
T PLN02533 216 LHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDF-EPGSEQYQWLENNLKKID------RKTTPWVVA 288 (427)
T ss_pred ccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccc-cCchHHHHHHHHHHHhhc------ccCCCEEEE
Confidence 111 135678889888877552111 124678899999884211 112244677
Q ss_pred eeccCCCCCC---C-------CHHHHHHHhhhcCCcEEEECCCCCCceE--------EEcCEEEEcCCCCCCCCC-----
Q psy10859 126 LCHGHDIIPW---G-------DPEALALLQRQLDVDILISGHTHKFEAY--------EHENKFYINPGSATGAFN----- 182 (224)
Q Consensus 126 ~~H~~~~~~~---~-------~~~~l~~~~~~~~~~~vi~GH~H~~~~~--------~~~~~~~in~Gs~~~~~~----- 182 (224)
+.|.+++... . ..+.++.++.+++++++++||.|..... ...+..||..|+.+..-.
T Consensus 289 ~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~ 368 (427)
T PLN02533 289 VVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKY 368 (427)
T ss_pred EeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCcccccccccc
Confidence 7886554211 1 1234567788899999999999976532 124677888888764310
Q ss_pred ----CCC---CCCCCeEEEEEE-eCCeEEEEEEEeecC-ceeEEEEeecc
Q psy10859 183 ----PLE---PKVNPSFVLMDI-QSSNVVTYVYQLIAD-EVTVERIDYKK 223 (224)
Q Consensus 183 ----~~~---~~~~~~~~~i~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 223 (224)
|.+ ....-||+++++ +...+.+++++-.++ ....+++-++|
T Consensus 369 ~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~ 418 (427)
T PLN02533 369 IDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKS 418 (427)
T ss_pred CCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEe
Confidence 111 134668888986 567889999986555 56677777765
No 40
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.74 E-value=1.6e-16 Score=125.81 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=95.3
Q ss_pred EEEEeeccCCCCCCCCh----HHHHHhhcCCCccEEEEcCCCCCh----------------HHHHHHHhc----CCcEEE
Q psy10859 3 VLVLGDLHIPHRTSGLP----AKFKKLLVPGRIQHILCTGNLVTK----------------ETFDYLKTL----ASDVHV 58 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~----~~l~~~~~~~~~D~vi~~GDl~~~----------------~~~~~l~~l----~~~v~~ 58 (224)
|+++||+|.+....+.. +.+.+.+++.++|+++++||++|. ..++.+... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 78999999865422211 224556677899999999999981 222333322 369999
Q ss_pred ecCCCCCCCCC------------C-----c--ceEEE--eCCEEEEeeecCcc---------cCCCCHHHHHHHHHhhcC
Q psy10859 59 VRGDFDEGTSY------------P-----E--KKVVT--VGQFRIGLCHGHDI---------IPWGDPEALALLQRQLDG 108 (224)
Q Consensus 59 v~GNHD~~~~~------------~-----~--~~~~~--~~~~~~~~~~g~~~---------~~~~~~~~~~~l~~~l~~ 108 (224)
++||||.+... . . ....+ .+++.++++..... .+....++++|+++.|..
T Consensus 82 v~GNHD~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~ 161 (256)
T cd07401 82 IRGNHDLFNIPSLDSENNYYRKYSATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEK 161 (256)
T ss_pred eCCCCCcCCCCCccchhhHHHHhheecCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHh
Confidence 99999986310 0 0 01111 36777776654211 122356788888876631
Q ss_pred CCCCCceeeeeCCeEEEeeccCCCCCC----CCHHHHHHHhhhcCCcEEEECCCCCCce
Q psy10859 109 TSYPEKKVVTVGQFRIGLCHGHDIIPW----GDPEALALLQRQLDVDILISGHTHKFEA 163 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~H~~~~~~~----~~~~~l~~~~~~~~~~~vi~GH~H~~~~ 163 (224)
....+.+|+++|.++.... .....+.++++++++++++|||+|....
T Consensus 162 --------~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 162 --------STNSNYTIWFGHYPTSTIISPSAKSSSKFKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred --------cccCCeEEEEEcccchhccCCCcchhHHHHHHHHhcCCcEEEeCCccCCCc
Confidence 1123468999996552211 1122366778888999999999999876
No 41
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.73 E-value=6.8e-18 Score=130.48 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=96.8
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc-CCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCCCC-CCcce
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV-PGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEGTS-YPEKK 73 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~~~-~~~~~ 73 (224)
+|+++|||||++.. .+.+.+.+ ++ ....|.++++||++| .++++.+++. .+++|+||||.+.. +....
T Consensus 17 ~ri~vigDIHG~~~--~L~~lL~~-i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~--~~~~v~GNHE~~~l~~~~~~ 91 (218)
T PRK11439 17 RHIWLVGDIHGCFE--QLMRKLRH-CRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH--WVRAVRGNHEQMALDALASQ 91 (218)
T ss_pred CeEEEEEcccCCHH--HHHHHHHh-cCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC--CceEeeCchHHHHHHHHHCC
Confidence 48999999999653 33333333 33 236899999999999 6788888763 57899999997641 10000
Q ss_pred EEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcC-CCCCCceeeeeCCeEEEeeccC-CCCCC--CC----------HH
Q psy10859 74 VVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDG-TSYPEKKVVTVGQFRIGLCHGH-DIIPW--GD----------PE 139 (224)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~i~~~H~~-~~~~~--~~----------~~ 139 (224)
.......+|............++.+..+.+ .++|.......++.+++++|+. |.... .. .+
T Consensus 92 -----~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~ 166 (218)
T PRK11439 92 -----QMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVYEWQKDVDLHQVLWSRS 166 (218)
T ss_pred -----ccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCchhhhccCCccceEEcCh
Confidence 000001111100000111111111222222 4677766666666678899976 42210 00 01
Q ss_pred HHHHHhh--h-cCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 140 ALALLQR--Q-LDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 140 ~l~~~~~--~-~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
.+..... . .+.+.+++||||.+.....++...|++||+-+
T Consensus 167 ~~~~~~~~~~~~~~~~vv~GHT~~~~~~~~~~~i~IDtGav~g 209 (218)
T PRK11439 167 RLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFG 209 (218)
T ss_pred hhhhccccccccCCCEEEECCccCCCccccCCEEEEECCCCCC
Confidence 1111111 1 14578999999999888889999999999763
No 42
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.72 E-value=1.1e-16 Score=113.72 Aligned_cols=109 Identities=28% Similarity=0.318 Sum_probs=74.4
Q ss_pred EEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCChHHHHHHHhc-CCcEEEecCCCCCCCCCCcceEEEeCCEEE
Q psy10859 4 LVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTL-ASDVHVVRGDFDEGTSYPEKKVVTVGQFRI 82 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l-~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~ 82 (224)
+++||+|.. . +....+.. +..++|.++++||+.+ +..+.+.++ +.++++|+|||| .++
T Consensus 1 ~viSDtH~~-~--~~~~~~~~--~~~~~d~ii~~GD~~~-~~~~~~~~~~~~~~~~V~GN~D---------------~~I 59 (129)
T cd07403 1 LVISDTESP-A--LYSPEIKV--RLEGVDLILSAGDLPK-EYLEYLVTMLNVPVYYVHGNHD---------------VDI 59 (129)
T ss_pred CeeccccCc-c--ccchHHHh--hCCCCCEEEECCCCCh-HHHHHHHHHcCCCEEEEeCCCc---------------cCE
Confidence 479999953 2 22222222 2578999999999865 344555554 568999999999 123
Q ss_pred EeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCC-------CCCHHHHHHHhhhcCCcEEEE
Q psy10859 83 GLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP-------WGDPEALALLQRQLDVDILIS 155 (224)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~-------~~~~~~l~~~~~~~~~~~vi~ 155 (224)
.++|+ +|..+ ..+.+.+.+++.+.+++++++
T Consensus 60 lv~H~------------------------------------------pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~ 97 (129)
T cd07403 60 LLTHA------------------------------------------PPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIH 97 (129)
T ss_pred EEECC------------------------------------------CCCcCcCcccccccCHHHHHHHHHHHCCcEEEE
Confidence 34443 32211 134566667777788999999
Q ss_pred CCCCCCceEE-----EcCEEEEcCC
Q psy10859 156 GHTHKFEAYE-----HENKFYINPG 175 (224)
Q Consensus 156 GH~H~~~~~~-----~~~~~~in~G 175 (224)
||+|.+.... .+++.++|++
T Consensus 98 GH~H~~~~~~~~~~~~~~t~~~n~~ 122 (129)
T cd07403 98 GHTHLNYGYQLRIRRVGDTTVINAY 122 (129)
T ss_pred cCcCCCcCccccccccCCEEEEeCC
Confidence 9999997655 7899999874
No 43
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.71 E-value=8.4e-17 Score=119.24 Aligned_cols=67 Identities=25% Similarity=0.289 Sum_probs=45.6
Q ss_pred CeEEEEeeccCCCCCCC-ChHHHHHhhcCCCccEEEEcCCCCC-----hHH------HHHHHhcCCcEEEecCCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSG-LPAKFKKLLVPGRIQHILCTGNLVT-----KET------FDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~-~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~------~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
|||+++||+|+...... ....+.+.....++|+||++||+++ ... .........|+++++||||...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence 89999999998543110 0123344445789999999999999 111 1223344789999999999884
No 44
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.70 E-value=1.1e-16 Score=125.20 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=92.8
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc---C-------CCccEEEEcCCCCC-----hHHHHHHHhc--CCcEEEecCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV---P-------GRIQHILCTGNLVT-----KETFDYLKTL--ASDVHVVRGDF 63 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~---~-------~~~D~vi~~GDl~~-----~~~~~~l~~l--~~~v~~v~GNH 63 (224)
|||++|||||++.. .+.+.+.+ +. + .+.|.++++||++| .++++.+.++ ...+++|.|||
T Consensus 1 ~~i~vigDIHG~~~--~L~~ll~~-~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNH 77 (234)
T cd07423 1 GPFDIIGDVHGCYD--ELEELLEK-LGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNH 77 (234)
T ss_pred CCeEEEEECCCCHH--HHHHHHHH-cCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCc
Confidence 89999999999653 33333332 21 1 13689999999999 6888888876 34789999999
Q ss_pred CCCC--CCCcce-EEEeCCEEEEeeecCcccCCCC----HHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC-
Q psy10859 64 DEGT--SYPEKK-VVTVGQFRIGLCHGHDIIPWGD----PEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW- 135 (224)
Q Consensus 64 D~~~--~~~~~~-~~~~~~~~~~~~~g~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~- 135 (224)
|.+. .+.... ....++.... ..+.+.. ...+.|+ ..+|..... +..+++++|+.+....
T Consensus 78 E~~l~~~~~~~~~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~l------~~lP~~~~~--~~~~~~~vHag~~~~~~ 144 (234)
T cd07423 78 DNKLYRKLQGRNVKITHGLEETV-----AQLEAESEEFKEEVIEFY------ESLPSHLVL--DEGKLVVAHAGIKEEMI 144 (234)
T ss_pred HHHHHHHhcCCCccccCcccchH-----HHHhhccHHHHHHHHHHH------HhCCcEEEe--CCCcEEEEeCCCChHhc
Confidence 9863 111100 0000100000 0011111 1122233 356654433 3347888997632111
Q ss_pred CCH-HHH---------------------HHHhhh-cCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 136 GDP-EAL---------------------ALLQRQ-LDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 136 ~~~-~~l---------------------~~~~~~-~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
... ..+ ..+... .+.+.+++||+|.+.....++...|++||+-+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~GHt~~~~~~~~~~~i~IDtGav~g 211 (234)
T cd07423 145 GRDSKRVRSFALYGDTTGETDEFGLPVRRDWAKEYRGDALVVYGHTPVPEPRWLNNTINIDTGCVFG 211 (234)
T ss_pred cccchhheeeeecccccCCcCCCCCccchhhHhhCCCCeEEEECCCCCccceEeCCEEEEECCCCCC
Confidence 000 000 001111 24578999999999888889999999999763
No 45
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.70 E-value=6.6e-15 Score=118.90 Aligned_cols=200 Identities=20% Similarity=0.233 Sum_probs=113.7
Q ss_pred CeEEEEeeccCCCCCCCCh---HHHHHhhcCCCccEEEEcCCCCC-------hHHHHHHH--hcCCcEEEecCCCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLP---AKFKKLLVPGRIQHILCTGNLVT-------KETFDYLK--TLASDVHVVRGDFDEGTS 68 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~---~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~--~l~~~v~~v~GNHD~~~~ 68 (224)
|||++|||+|......... +++.+.++...+|.|+++|||++ ....++|+ ....|++++|||||....
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDARVV 80 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCCCceEeeCCCCcCCch
Confidence 8999999999873111222 23444456678999999999999 45556677 556789999999998851
Q ss_pred CC---------c-ce--EEEe-CCEEEEeeecC---cccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCC
Q psy10859 69 YP---------E-KK--VVTV-GQFRIGLCHGH---DIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDI 132 (224)
Q Consensus 69 ~~---------~-~~--~~~~-~~~~~~~~~g~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~ 132 (224)
.. . .. .... +++++....-. ...+.....++.|+.+.+.. .+.. ....+++.|.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~--~~~~-----~~~~~v~~~hh~~ 153 (301)
T COG1409 81 NGEAFSDQFFNRYAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAA--APER-----AKDTVVVLHHHPL 153 (301)
T ss_pred HHHHhhhhhcccCcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHh--Cccc-----cCceEEEecCCCC
Confidence 11 0 11 1111 34455433221 01122366788898877632 1110 1223344444543
Q ss_pred C-CC--------CCHHHHHHHhhhcC--CcEEEECCCCCC--ceEEEcCEEEEc----CCCCCCCCCCCCCCCCCeEEEE
Q psy10859 133 I-PW--------GDPEALALLQRQLD--VDILISGHTHKF--EAYEHENKFYIN----PGSATGAFNPLEPKVNPSFVLM 195 (224)
Q Consensus 133 ~-~~--------~~~~~l~~~~~~~~--~~~vi~GH~H~~--~~~~~~~~~~in----~Gs~~~~~~~~~~~~~~~~~~i 195 (224)
. +. .+.......+...+ ++++++||.|.. ......+..+.+ .++.... .........+..+
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 231 (301)
T COG1409 154 PSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCS--QVFRGSATAFNTL 231 (301)
T ss_pred CCCCCccceeeeecchhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCccce--eecCCCccceeee
Confidence 2 21 22333444555566 999999999999 666666665553 3333321 2223344555667
Q ss_pred EEeCCeEEEEEEEe
Q psy10859 196 DIQSSNVVTYVYQL 209 (224)
Q Consensus 196 ~~~~~~~~~~~~~~ 209 (224)
++............
T Consensus 232 ~~~~~~~~~~~~~~ 245 (301)
T COG1409 232 DLDGPGVRVLVLAA 245 (301)
T ss_pred eecCCCeeEEEEec
Confidence 77766665444443
No 46
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=5.5e-16 Score=122.35 Aligned_cols=67 Identities=19% Similarity=0.354 Sum_probs=47.5
Q ss_pred CeEEEEeeccCCCCCCCC---------hHHHHHhhcCCCccEEEEcCCCCC-----h-------HHHHHHHhcC-CcEEE
Q psy10859 1 MLVLVLGDLHIPHRTSGL---------PAKFKKLLVPGRIQHILCTGNLVT-----K-------ETFDYLKTLA-SDVHV 58 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~---------~~~l~~~~~~~~~D~vi~~GDl~~-----~-------~~~~~l~~l~-~~v~~ 58 (224)
|||+++||+|++...... .+.+.+.+.++++|+|+++||++| . +.++.|.+.+ +|+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 999999999986542211 123444455778999999999999 1 2223334444 79999
Q ss_pred ecCCCCCCC
Q psy10859 59 VRGDFDEGT 67 (224)
Q Consensus 59 v~GNHD~~~ 67 (224)
++||||...
T Consensus 81 i~GNHD~~~ 89 (253)
T TIGR00619 81 ISGNHDSAQ 89 (253)
T ss_pred EccCCCChh
Confidence 999999864
No 47
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.65 E-value=2.1e-15 Score=108.76 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=99.9
Q ss_pred CeEEEEeeccCCCCCC-----------CChHHHHHhhc--CCCccEEEEcCCCCC-------hHHHHHHHhcCCcEEEec
Q psy10859 1 MLVLVLGDLHIPHRTS-----------GLPAKFKKLLV--PGRIQHILCTGNLVT-------KETFDYLKTLASDVHVVR 60 (224)
Q Consensus 1 mki~~isDiH~~~~~~-----------~~~~~l~~~~~--~~~~D~vi~~GDl~~-------~~~~~~l~~l~~~v~~v~ 60 (224)
|++..|||+|+..... ...+++.+..+ -..-|.|++.|||.- .+.++++..+....|.+.
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~LPG~K~m~r 80 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDLPGTKYMIR 80 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheechhhhhhhhhhhcCCCcEEEEe
Confidence 8999999999844321 11234555443 234689999999986 455667777767899999
Q ss_pred CCCCCCC--------CCCcc-----eEEEeCCEEEEeeecCcccC---C--CCHHHHHHHHHhhcCCCCCC-ceeeeeCC
Q psy10859 61 GDFDEGT--------SYPEK-----KVVTVGQFRIGLCHGHDIIP---W--GDPEALALLQRQLDGTSYPE-KKVVTVGQ 121 (224)
Q Consensus 61 GNHD~~~--------~~~~~-----~~~~~~~~~~~~~~g~~~~~---~--~~~~~~~~l~~~l~~~~~~~-~~~~~~~~ 121 (224)
|||||+. .+|.. ..+.+.++.++.+.| |..+ + .+.+..+.+.+++..-.+.. +...+...
T Consensus 81 GNHDYWw~s~skl~n~lp~~l~~~n~~f~l~n~aI~G~Rg-W~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~ 159 (230)
T COG1768 81 GNHDYWWSSISKLNNALPPILFYLNNGFELLNYAIVGVRG-WDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVS 159 (230)
T ss_pred cCCccccchHHHHHhhcCchHhhhccceeEeeEEEEEeec-ccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcC
Confidence 9999996 23332 223444444444444 2111 2 23344443333322111111 11223345
Q ss_pred eEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCc
Q psy10859 122 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFE 162 (224)
Q Consensus 122 ~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~ 162 (224)
..|+++|++|..+...+..+.+++.+.+++.+++||.|...
T Consensus 160 ~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 160 KFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred eEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCCC
Confidence 67899999998776666667777888999999999999754
No 48
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.60 E-value=2.8e-13 Score=111.44 Aligned_cols=216 Identities=17% Similarity=0.176 Sum_probs=131.5
Q ss_pred CeEEEEeeccCCCCC-CCChHHHHHhhcCCCccEEEEcCCCCC-----------hHHHHHHH---h--cCCcEEEecCCC
Q psy10859 1 MLVLVLGDLHIPHRT-SGLPAKFKKLLVPGRIQHILCTGNLVT-----------KETFDYLK---T--LASDVHVVRGDF 63 (224)
Q Consensus 1 mki~~isDiH~~~~~-~~~~~~l~~~~~~~~~D~vi~~GDl~~-----------~~~~~~l~---~--l~~~v~~v~GNH 63 (224)
++|++++|.=.+... ....+.+.+..++.++|+|+.+||-++ ++.++.+- . +..|.+.|.|||
T Consensus 27 l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNH 106 (394)
T PTZ00422 27 LRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQA 106 (394)
T ss_pred EEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCcc
Confidence 378899996532211 112234555566789999999999975 22223222 1 457999999999
Q ss_pred CCCCC-------C---------------------------Ccc-e----EEEeC-----------C--EEEEeeecCc--
Q psy10859 64 DEGTS-------Y---------------------------PEK-K----VVTVG-----------Q--FRIGLCHGHD-- 89 (224)
Q Consensus 64 D~~~~-------~---------------------------~~~-~----~~~~~-----------~--~~~~~~~g~~-- 89 (224)
|+..+ + |.. + .+... + ..+.++.--.
T Consensus 107 Dy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~ 186 (394)
T PTZ00422 107 DWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILS 186 (394)
T ss_pred cccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEEEECchhc
Confidence 98531 1 100 0 11110 1 1222222100
Q ss_pred -ccCC--CCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCC---CCCH---HHHHHHhhhcCCcEEEECCCCC
Q psy10859 90 -IIPW--GDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP---WGDP---EALALLQRQLDVDILISGHTHK 160 (224)
Q Consensus 90 -~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~---~~~~---~~l~~~~~~~~~~~vi~GH~H~ 160 (224)
..++ ......+|++++|.. ..+..+.+|++-|.+.+.. ..+. ..+..++++++++++++||-|.
T Consensus 187 ~~~~~~~~~~~~w~~L~~~L~~-------a~k~a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~ 259 (394)
T PTZ00422 187 SSFPYKKVSERAWQDLKATLEY-------APKIADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRN 259 (394)
T ss_pred ccCCccccCHHHHHHHHHHHHh-------hccCCCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccc
Confidence 0111 134455677766621 1223468899999444321 1222 2567788999999999999998
Q ss_pred CceEEEcCEEEEcCCCCCCCCC-CC-------CCCCCCeEEEEEEeCCeEEEEEEE-eecCceeEEEEeecc
Q psy10859 161 FEAYEHENKFYINPGSATGAFN-PL-------EPKVNPSFVLMDIQSSNVVTYVYQ-LIADEVTVERIDYKK 223 (224)
Q Consensus 161 ~~~~~~~~~~~in~Gs~~~~~~-~~-------~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (224)
-+....+++.|+..|+.+..+. +. -....++|+.++++..++.+++++ ..++.+....+..++
T Consensus 260 lq~i~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~~~~~ 331 (394)
T PTZ00422 260 MEVLTDEGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQPLKK 331 (394)
T ss_pred eEEecCCCceEEEeCccccccCCCCCCCCCcceecCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeeecccc
Confidence 8777778899999999765321 00 012468899999999999999997 677766665555443
No 49
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.60 E-value=4.9e-15 Score=110.10 Aligned_cols=132 Identities=17% Similarity=0.139 Sum_probs=81.2
Q ss_pred EEEeeccCCCCCCC------------ChHHHHHhhc--CCCccEEEEcCCCCCh----HHHHHHHhcCCcEEEecCCCCC
Q psy10859 4 LVLGDLHIPHRTSG------------LPAKFKKLLV--PGRIQHILCTGNLVTK----ETFDYLKTLASDVHVVRGDFDE 65 (224)
Q Consensus 4 ~~isDiH~~~~~~~------------~~~~l~~~~~--~~~~D~vi~~GDl~~~----~~~~~l~~l~~~v~~v~GNHD~ 65 (224)
+++||+|++..... ..+++.+.+. ..++|.|+++||+++. ...+.++++..|+++|+||||.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~l~~~~~~~~~v~GNHD~ 81 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTELELLSRLNGRKHLIKGNHDS 81 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHHHHHHHhCCCCeEEEeCCCCc
Confidence 68999998664210 0122333232 2368999999999982 2266777777799999999998
Q ss_pred CCCCCcceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHh
Q psy10859 66 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQ 145 (224)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~ 145 (224)
........ .. ......+.......++.+++++|++.... ..
T Consensus 82 ~~~~~~~~------~~------------------------~~~~~~~~~~~~~~~~~~i~l~H~~~~~~-~~-------- 122 (168)
T cd07390 82 SLERKLLA------FL------------------------LKFESVLQAVRLKIGGRRVYLSHYPILEW-NG-------- 122 (168)
T ss_pred hhhhcccc------cc------------------------cccceeeeEEEEEECCEEEEEEeCCcccC-CC--------
Confidence 63110000 00 00012334455667889999999542211 10
Q ss_pred hhcCCcEEEECCCCCCceEEEcCEEEEcCCC
Q psy10859 146 RQLDVDILISGHTHKFEAYEHENKFYINPGS 176 (224)
Q Consensus 146 ~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs 176 (224)
..+++++++||+|.+..... ...++|+|.
T Consensus 123 -~~~~d~vi~GHtH~~~~~~~-~~~~~n~~~ 151 (168)
T cd07390 123 -LDRGSWNLHGHIHSNSPDIG-PPRRINVGV 151 (168)
T ss_pred -CCCCeEEEEeeeCCCCCCCC-CCceEEEeE
Confidence 25679999999999876531 146778765
No 50
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.58 E-value=1.7e-13 Score=117.82 Aligned_cols=180 Identities=19% Similarity=0.280 Sum_probs=103.9
Q ss_pred CeEEEEeeccCCCCCCC--ChHHHHHhhc---------CCCccEEEEcCCCCCh---------------------HHHHH
Q psy10859 1 MLVLVLGDLHIPHRTSG--LPAKFKKLLV---------PGRIQHILCTGNLVTK---------------------ETFDY 48 (224)
Q Consensus 1 mki~~isDiH~~~~~~~--~~~~l~~~~~---------~~~~D~vi~~GDl~~~---------------------~~~~~ 48 (224)
++++++||+|.+..... ....|.+.+. ..++|.++++||+++. .+.+.
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 57999999997653211 1134555555 4579999999999971 24455
Q ss_pred HHhc--CCcEEEecCCCCCCC-CCCcceEEEeCCEEEEeeecCcccCCCCHHHHHHHHH-hhcCCCCCCceeeeeCCeEE
Q psy10859 49 LKTL--ASDVHVVRGDFDEGT-SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQR-QLDGTSYPEKKVVTVGQFRI 124 (224)
Q Consensus 49 l~~l--~~~v~~v~GNHD~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~i 124 (224)
|+++ ..|+++++||||... ..|... ........+.. .+.. +........++.++
T Consensus 324 L~~L~~~i~V~~ipGNHD~~~~~lPQ~~--------------------l~~~l~~~l~~~~v~~--lsNP~~i~l~G~~i 381 (504)
T PRK04036 324 LKQIPEDIKIIISPGNHDAVRQAEPQPA--------------------FPEEIRSLFPEHNVTF--VSNPALVNLHGVDV 381 (504)
T ss_pred HHhhhcCCeEEEecCCCcchhhccCCCC--------------------ccHHHHHhcCcCCeEE--ecCCeEEEECCEEE
Confidence 6655 468999999999853 122110 01111111110 0100 11122345577888
Q ss_pred EeeccCCCCC------C---CCH-HHHHHHhh------------------------hcCCcEEEECCCCCCceEEEcCEE
Q psy10859 125 GLCHGHDIIP------W---GDP-EALALLQR------------------------QLDVDILISGHTHKFEAYEHENKF 170 (224)
Q Consensus 125 ~~~H~~~~~~------~---~~~-~~l~~~~~------------------------~~~~~~vi~GH~H~~~~~~~~~~~ 170 (224)
+++||.+... . ..+ ..+..+++ ..-++++++||+|.+.....+++.
T Consensus 382 Ll~HG~~idDl~~~i~~~s~~~p~~~m~~~l~~rHlaPt~p~~~~~~p~~~D~lvi~~~Pdv~~~GH~H~~~~~~~~g~~ 461 (504)
T PRK04036 382 LIYHGRSIDDVISLIPGASYEKPGKAMEELLKRRHLAPIYGGRTPIAPEKEDYLVIDEVPDIFHTGHVHINGYGKYRGVL 461 (504)
T ss_pred EEECCCCHHHHHhhcccccccCHHHHHHHHHHhcccCCCCCCCEEeCcCCCCCEEEecCCCEEEeCCCCccceEEECCEE
Confidence 9999876321 1 111 22222232 023589999999999998999999
Q ss_pred EEcCCCCCCC--CCCC--CCCCCCeEEEEEEeCCeE
Q psy10859 171 YINPGSATGA--FNPL--EPKVNPSFVLMDIQSSNV 202 (224)
Q Consensus 171 ~in~Gs~~~~--~~~~--~~~~~~~~~~i~~~~~~~ 202 (224)
++|+|++... |+.. ..-..+...+++++..++
T Consensus 462 ~IN~gsf~~~t~fq~~~~~~p~~~~~~lv~l~tl~~ 497 (504)
T PRK04036 462 LINSGTWQAQTEFQKRVNIVPTPARVPIVDLDTLEV 497 (504)
T ss_pred EEECCcccccccccceeccCCCCCEEEEEECCCCcE
Confidence 9999998731 1100 001345666677666543
No 51
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.55 E-value=1.3e-14 Score=114.10 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=89.0
Q ss_pred EEEeeccCCCCCC--CChHHHHHhhcCC-----CccEEEEcCCCCCh---------------------HHHHHHHhc--C
Q psy10859 4 LVLGDLHIPHRTS--GLPAKFKKLLVPG-----RIQHILCTGNLVTK---------------------ETFDYLKTL--A 53 (224)
Q Consensus 4 ~~isDiH~~~~~~--~~~~~l~~~~~~~-----~~D~vi~~GDl~~~---------------------~~~~~l~~l--~ 53 (224)
+++||+|++.... ...+.|.+.++.. ++|.|+++||+++. .+.+.++++ +
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 6899999754321 1113455555433 57999999999972 133455555 4
Q ss_pred CcEEEecCCCCCCCC-CC---------------------cceEEEeCCEEEEeeecCcccC---C---CC-HHHHHHHHH
Q psy10859 54 SDVHVVRGDFDEGTS-YP---------------------EKKVVTVGQFRIGLCHGHDIIP---W---GD-PEALALLQR 104 (224)
Q Consensus 54 ~~v~~v~GNHD~~~~-~~---------------------~~~~~~~~~~~~~~~~g~~~~~---~---~~-~~~~~~l~~ 104 (224)
.++++++||||.... +| ....+.++|.++.+.||+.... . .. ..-..+++.
T Consensus 82 ~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~~~~~~~~~~~~~~ 161 (243)
T cd07386 82 IKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIYHGRSIDDVVKLIPGLSYDKPGKAMEE 161 (243)
T ss_pred CeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEECCCCHHHHHHhCCCCCcccHHHHHHH
Confidence 789999999998631 11 1124566777777777743110 0 00 000111111
Q ss_pred hhcCCCCCCceeeeeCCeEEEeeccCCCCCC---CCHHHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 105 QLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW---GDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~---~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
.+.. .|-.|..+. ..+..-..+.....++++++||+|.+.....+++.++|+||+..
T Consensus 162 ~l~~------------------~hl~P~~~~~~~~~~~~~~~~~~~~~p~vii~Gh~h~~~~~~~~~~~~vn~Gsf~~ 221 (243)
T cd07386 162 LLKR------------------RHLAPIYGGRTPIAPEPEDYLVIDEVPDILHTGHVHVYGVGVYRGVLLVNSGTWQS 221 (243)
T ss_pred HHhh------------------cccCCCCCCCEeeCCCCCCCEEecCCCCEEEECCCCchHhEEECCEEEEECCCCcC
Confidence 1111 111111100 00000000112346899999999999988889999999999885
No 52
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.53 E-value=3.1e-13 Score=99.06 Aligned_cols=125 Identities=22% Similarity=0.198 Sum_probs=78.0
Q ss_pred EEeeccCCCCCC-CC----------hHHHHHhhcCCCccEEEEcCCCCCh----------HHHHHHHhc-----CCcEEE
Q psy10859 5 VLGDLHIPHRTS-GL----------PAKFKKLLVPGRIQHILCTGNLVTK----------ETFDYLKTL-----ASDVHV 58 (224)
Q Consensus 5 ~isDiH~~~~~~-~~----------~~~l~~~~~~~~~D~vi~~GDl~~~----------~~~~~l~~l-----~~~v~~ 58 (224)
++||+|+..... .+ .+.+.+.++..+||+|+++||+++. +.++.+.++ +.|+++
T Consensus 2 ~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (156)
T cd08165 2 FLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHV 81 (156)
T ss_pred ccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 689999733221 12 1144556667899999999999981 222333332 469999
Q ss_pred ecCCCCCCCCCCcceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCH
Q psy10859 59 VRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDP 138 (224)
Q Consensus 59 v~GNHD~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~ 138 (224)
|+||||.... . ............. -++++|.+.
T Consensus 82 v~GNHD~~~~----------------------~-~~~~~~~~~~~~~-----------------~~~l~H~p~------- 114 (156)
T cd08165 82 VVGNHDIGFH----------------------Y-EMTTYKLERFEKV-----------------FILLQHFPL------- 114 (156)
T ss_pred EcCCCCcCCC----------------------C-ccCHHHHHHHHHH-----------------eeeeeCChH-------
Confidence 9999998520 0 0111111222211 188889431
Q ss_pred HHHHHHhhhcCCcEEEECCCCCCceE-EEcCEEEEcCCCCCC
Q psy10859 139 EALALLQRQLDVDILISGHTHKFEAY-EHENKFYINPGSATG 179 (224)
Q Consensus 139 ~~l~~~~~~~~~~~vi~GH~H~~~~~-~~~~~~~in~Gs~~~ 179 (224)
..+..+.+++++++||+|..... ..+++..+...|+++
T Consensus 115 ---~~~~~~~~~~~~l~GH~H~~~~~~~~~~~~e~~~~~~~~ 153 (156)
T cd08165 115 ---YRLLQWLKPRLVLSGHTHSFCEVTHPDGTPEVTVPSFSW 153 (156)
T ss_pred ---HHHHHhhCCCEEEEcccCCCceeEEECCEEEEEEeccee
Confidence 12445667889999999987544 668888888778774
No 53
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.52 E-value=1.7e-13 Score=96.69 Aligned_cols=111 Identities=36% Similarity=0.512 Sum_probs=73.1
Q ss_pred EEEeeccCCCCCCCChHHH-HHhhcCCCccEEEEcCCCCC-----h--HH--HHHHHhcCCcEEEecCCCCCCCCCCcce
Q psy10859 4 LVLGDLHIPHRTSGLPAKF-KKLLVPGRIQHILCTGNLVT-----K--ET--FDYLKTLASDVHVVRGDFDEGTSYPEKK 73 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l-~~~~~~~~~D~vi~~GDl~~-----~--~~--~~~l~~l~~~v~~v~GNHD~~~~~~~~~ 73 (224)
+++||+|.+... ..... .....+.++|+|+++||+++ . .. ...+.+...|+++++||||
T Consensus 1 ~~~gD~h~~~~~--~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD--------- 69 (131)
T cd00838 1 AVISDIHGNLEA--LEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD--------- 69 (131)
T ss_pred CeeecccCCccc--hHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce---------
Confidence 478999986542 11111 23445789999999999998 1 11 2334455789999999999
Q ss_pred EEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCC--------CHHHHHHHh
Q psy10859 74 VVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWG--------DPEALALLQ 145 (224)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~--------~~~~l~~~~ 145 (224)
+++.|. ++..... ....+...+
T Consensus 70 --------i~~~H~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 99 (131)
T cd00838 70 --------ILLTHG------------------------------------------PPYDPLDELSPDEDPGSEALLELL 99 (131)
T ss_pred --------EEEecc------------------------------------------CCCCCchhhcccchhhHHHHHHHH
Confidence 233333 2211100 244555666
Q ss_pred hhcCCcEEEECCCCCCceEE--EcCEEEEcCC
Q psy10859 146 RQLDVDILISGHTHKFEAYE--HENKFYINPG 175 (224)
Q Consensus 146 ~~~~~~~vi~GH~H~~~~~~--~~~~~~in~G 175 (224)
...+++++++||+|.+.... ..++.++++|
T Consensus 100 ~~~~~~~~~~GH~H~~~~~~~~~~~~~~v~~g 131 (131)
T cd00838 100 EKYGVDLVLSGHTHVYERREPDGGGTLYINPG 131 (131)
T ss_pred HHhCCCEEEeCCeeccccccCCCCceEEecCC
Confidence 77899999999999998766 5677777765
No 54
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=110.21 Aligned_cols=187 Identities=20% Similarity=0.187 Sum_probs=98.7
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-------hHHHHHHHhcC--CcEEEecCCCCCCCCCCcc
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-------KETFDYLKTLA--SDVHVVRGDFDEGTSYPEK 72 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~l~--~~v~~v~GNHD~~~~~~~~ 72 (224)
||+++||+|...-..... ++...+..+.+|.++++||+++ ..+.+.++++. .++++|.||||+.......
T Consensus 46 ~iv~lSDlH~~~~~~~~~-~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~~~~~~ 124 (284)
T COG1408 46 KIVQLSDLHSLPFREEKL-ALLIAIANELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPLGVFAVLGNHDYGVDRSNV 124 (284)
T ss_pred EEEEeehhhhchhhHHHH-HHHHHHHhcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccCCEEEEecccccccccccc
Confidence 689999999854321111 2233334567799999999998 35666777663 4799999999998622211
Q ss_pred ---eEEEeCCEEEEe----eecCcccC---CCCHHHHHHHHHhhcCCC-------C---CCceeeeeCCeEEEeeccCCC
Q psy10859 73 ---KVVTVGQFRIGL----CHGHDIIP---WGDPEALALLQRQLDGTS-------Y---PEKKVVTVGQFRIGLCHGHDI 132 (224)
Q Consensus 73 ---~~~~~~~~~~~~----~~g~~~~~---~~~~~~~~~l~~~l~~~~-------~---~~~~~~~~~~~~i~~~H~~~~ 132 (224)
..++-.+..... +.+..... .....+.....+.+.... + +...........|+++|.+
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlL~H~P-- 202 (284)
T COG1408 125 YIGDLLEELGRVVLRNEIAVIDLLALRIEVGGLDLYLAGVEDILAGLPLAPFTIGLDIAEALKQLDEDLPGILLSHEP-- 202 (284)
T ss_pred hhhhhhhhcceeeecccchhcccccccccccccccccccCchHHhhCcccccccccchhhhhccccccccceEeccCC--
Confidence 111111111100 00000000 000001111111110000 0 0001122345678999943
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEECCCCCCceEE----------------EcC------EEEEcCCCCCCCCCCCCCCCCC
Q psy10859 133 IPWGDPEALALLQRQLDVDILISGHTHKFEAYE----------------HEN------KFYINPGSATGAFNPLEPKVNP 190 (224)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~----------------~~~------~~~in~Gs~~~~~~~~~~~~~~ 190 (224)
+.+.. .+.+++|++++||||.+.+.. .++ ..|++.|-.+.. .|.+...++
T Consensus 203 ------~~~~~-~~~~~~dLvLSGHTHGGQi~~p~~~~l~~~~~~~~~~~g~~~~~~~~lyVSrGlG~~~-~p~R~~~~P 274 (284)
T COG1408 203 ------DIILQ-LRLYGVDLVLSGHTHGGQIRLPLWGPLVTNALSGRYRAGGLRQFGAQLYVSRGLGTTG-PPIRLGCPP 274 (284)
T ss_pred ------ceehh-hccCcceEEEeccccCCeEEeecccccccccccccccccceecCCceEEEeCCcCCCC-CCcccCCCc
Confidence 32322 235589999999999976531 011 247777766653 477777888
Q ss_pred eEEEEEEeC
Q psy10859 191 SFVLMDIQS 199 (224)
Q Consensus 191 ~~~~i~~~~ 199 (224)
.-+++++..
T Consensus 275 EI~vitL~~ 283 (284)
T COG1408 275 EITVITLKA 283 (284)
T ss_pred eEEEEEEec
Confidence 888887753
No 55
>KOG1432|consensus
Probab=99.49 E-value=4.1e-12 Score=100.70 Aligned_cols=212 Identities=14% Similarity=0.115 Sum_probs=119.9
Q ss_pred CeEEEEeeccCCCCC-----CCCh------------HHHHHhhcCCCccEEEEcCCCCC-----------hHHHHHHHhc
Q psy10859 1 MLVLVLGDLHIPHRT-----SGLP------------AKFKKLLVPGRIQHILCTGNLVT-----------KETFDYLKTL 52 (224)
Q Consensus 1 mki~~isDiH~~~~~-----~~~~------------~~l~~~~~~~~~D~vi~~GDl~~-----------~~~~~~l~~l 52 (224)
.||+++||+|.+... +-++ .-+.+.++.++||+|+++||.++ ..++.-..+.
T Consensus 54 fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~ 133 (379)
T KOG1432|consen 54 FKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDR 133 (379)
T ss_pred eEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhc
Confidence 489999999985541 0111 13456677899999999999998 2233333344
Q ss_pred CCcEEEecCCCCCCC------------CCC--------c-c--e-EEEeCCEEE------------------Eeeec--C
Q psy10859 53 ASDVHVVRGDFDEGT------------SYP--------E-K--K-VVTVGQFRI------------------GLCHG--H 88 (224)
Q Consensus 53 ~~~v~~v~GNHD~~~------------~~~--------~-~--~-~~~~~~~~~------------------~~~~g--~ 88 (224)
++|..++.||||... ..| . . . ...++.++. .++.. .
T Consensus 134 ~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~ 213 (379)
T KOG1432|consen 134 KIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSY 213 (379)
T ss_pred CCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEEEecCCc
Confidence 799999999999774 011 0 0 1 111122211 11111 0
Q ss_pred cc-------cCCCCHHHHHHHHHhhcCCCCCCceeeeeCC-eEEEeeccCCC--------CC------------CCCHHH
Q psy10859 89 DI-------IPWGDPEALALLQRQLDGTSYPEKKVVTVGQ-FRIGLCHGHDI--------IP------------WGDPEA 140 (224)
Q Consensus 89 ~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~i~~~H~~~~--------~~------------~~~~~~ 140 (224)
.. ..|....+..|+..... . ......+.+. .-+...|.+.. .+ ..+...
T Consensus 214 ~s~~~~~~~Ydwik~sq~~wl~~~~~--~-~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~ 290 (379)
T KOG1432|consen 214 TSVPPLLPGYDWIKESQLEWLSDTSK--E-FKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGF 290 (379)
T ss_pred ccccccccCccchhhhhHHHHhhhhh--h-hhcccCccCCCCceEEEEcccHHHhhccCCCcccceeeccccccccccHH
Confidence 11 22334556667765331 0 0111122222 45667775431 11 112334
Q ss_pred HHHHhhhcCCcEEEECCCCCCceE-EEcC-EEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEEEE-EEEeecCceeE
Q psy10859 141 LALLQRQLDVDILISGHTHKFEAY-EHEN-KFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTY-VYQLIADEVTV 216 (224)
Q Consensus 141 l~~~~~~~~~~~vi~GH~H~~~~~-~~~~-~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 216 (224)
+..+...-+++.|+|||-|....- ...+ ++++..|+.|... +...+..+...+++++...-.++ ..++++....+
T Consensus 291 ~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGygg-Yg~~gw~Rr~Rv~e~d~~~~~IkTWKRl~d~~~~~ 368 (379)
T KOG1432|consen 291 LTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGG-YGIGGWERRARVFELDLNKDRIKTWKRLDDKPLSV 368 (379)
T ss_pred HHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccCC-cCcCCcccceEEEEccccccccceeeecCCCCcce
Confidence 444544678999999999998654 4445 7888888888652 33455678888988886555443 34555555544
No 56
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.47 E-value=1.4e-13 Score=105.54 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=86.6
Q ss_pred EEEeeccCCCCCCCChHHHHHhhc--------CCCccEEEEcCCCCC-----hHHHHHHHhc-------CCcEEEecCCC
Q psy10859 4 LVLGDLHIPHRTSGLPAKFKKLLV--------PGRIQHILCTGNLVT-----KETFDYLKTL-------ASDVHVVRGDF 63 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l~~~~~--------~~~~D~vi~~GDl~~-----~~~~~~l~~l-------~~~v~~v~GNH 63 (224)
++|||+|++.. .+.+.+ +.++ ..+.|.++++||++| .++++.+.++ +.++++++|||
T Consensus 1 ~vi~DIHG~~~--~l~~ll-~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNH 77 (208)
T cd07425 1 VAIGDLHGDLD--AFREIL-KGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNH 77 (208)
T ss_pred CEEeCccCCHH--HHHHHH-HHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCC
Confidence 47999998553 232222 2222 246899999999999 5777777765 25799999999
Q ss_pred CCCCCCCcceEEEeCCEEEEeeecCcc------cCC-CCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC-
Q psy10859 64 DEGTSYPEKKVVTVGQFRIGLCHGHDI------IPW-GDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW- 135 (224)
Q Consensus 64 D~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~- 135 (224)
|........ .....+. ..+... ..+ .......|++ ++|.... .+ .++++|+.+...|
T Consensus 78 E~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~------~lP~~~~--~~--~~~fvHag~~~~w~ 142 (208)
T cd07425 78 ELMNLCGDF---RYVHPKY--FNEFGGLAMRRRELFSPGGELGRWLR------SKPVIVK--VN--DTLFVHGGLGPLWY 142 (208)
T ss_pred cHHHHcchh---ccCChhH--HHHHHhhhhhHHHhcCCccHHHHHHH------hCCeEEE--EC--CEEEEeCCcHHHHh
Confidence 987411000 0000000 000000 000 1112234443 3443332 22 3677898763222
Q ss_pred -------CCH----HHHHHHhhhcCCcEEEECCCCCCceE--EE-cCEEEEcCCCCC
Q psy10859 136 -------GDP----EALALLQRQLDVDILISGHTHKFEAY--EH-ENKFYINPGSAT 178 (224)
Q Consensus 136 -------~~~----~~l~~~~~~~~~~~vi~GH~H~~~~~--~~-~~~~~in~Gs~~ 178 (224)
... ..+...++..+.+++++||||.+... .. ++..-|.+|...
T Consensus 143 r~y~~~~~~~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g~~~ 199 (208)
T cd07425 143 RGYSKETSDKECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVGMSK 199 (208)
T ss_pred hHhhhhhhhccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCCcch
Confidence 000 13556677788999999999998644 33 345556666544
No 57
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.46 E-value=7.6e-13 Score=104.08 Aligned_cols=182 Identities=13% Similarity=0.119 Sum_probs=95.8
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcC---------CCccEEEEcCCCCC-----hHHHHHHHhc--CCcEEEecCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVP---------GRIQHILCTGNLVT-----KETFDYLKTL--ASDVHVVRGDFD 64 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~---------~~~D~vi~~GDl~~-----~~~~~~l~~l--~~~v~~v~GNHD 64 (224)
||+++|||||++.. .+.+.+ +.+.. ...|.++++||++| .++++.+.++ ..+++++.||||
T Consensus 1 ~~~~vIGDIHG~~~--~L~~lL-~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE 77 (245)
T PRK13625 1 MKYDIIGDIHGCYQ--EFQALT-EKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHC 77 (245)
T ss_pred CceEEEEECccCHH--HHHHHH-HHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccH
Confidence 89999999999653 332222 22221 23589999999999 5777777665 347999999999
Q ss_pred CCC-CCC--cceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcC-CCCCCceeeeeCCeEEEeeccCCCCCC-C-CH
Q psy10859 65 EGT-SYP--EKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDG-TSYPEKKVVTVGQFRIGLCHGHDIIPW-G-DP 138 (224)
Q Consensus 65 ~~~-~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~i~~~H~~~~~~~-~-~~ 138 (224)
.+. .+. .......++.... .++............+..+.. ..+|..... ...+++++|+...... . ..
T Consensus 78 ~~~l~~~~~~~~~~~~gg~~tl----~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~--~~~~~~~vHAG~~~~~~~~~~ 151 (245)
T PRK13625 78 NKLYRFFLGRNVTIAHGLETTV----AEYEALPSHKQNMIKEKFITLYEQAPLYHIL--DEGRLVVAHAGIRQDYIGRQD 151 (245)
T ss_pred HHHHHHHhCCCccccchhHhHH----HHHhccChhhHHHHHHHHHHHHHhCCceEEE--eCCCEEEEECCCChHhcccch
Confidence 753 110 0000000110000 000000000000000101111 234543333 3345788897643211 0 11
Q ss_pred HHHH---------------------HHhhh-cCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEE
Q psy10859 139 EALA---------------------LLQRQ-LDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMD 196 (224)
Q Consensus 139 ~~l~---------------------~~~~~-~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~ 196 (224)
+... .+.+. .+.+.+++||+........++...|.+|+.-+ +..+.++
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~vV~GHtp~~~~~~~~~~i~IDtGa~~g----------G~Ltal~ 221 (245)
T PRK13625 152 KKVQTFVLYGDITGEKHPDGSPVRRDWAKEYKGTAWIVYGHTPVKEPRFVNHTVNIDTGCVFG----------GRLTALR 221 (245)
T ss_pred hhhhhHHhhccccCCcCCCCCeeeeccchhcCCCcEEEECCCCCccceecCCeEEEECcCccC----------CEEEEEE
Confidence 0110 01111 24568999999888777778889999998663 4566677
Q ss_pred EeCCe
Q psy10859 197 IQSSN 201 (224)
Q Consensus 197 ~~~~~ 201 (224)
+.+++
T Consensus 222 l~~~~ 226 (245)
T PRK13625 222 YPEME 226 (245)
T ss_pred CCCCc
Confidence 76553
No 58
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.45 E-value=1.2e-11 Score=103.46 Aligned_cols=120 Identities=14% Similarity=0.084 Sum_probs=84.1
Q ss_pred EEE-eCCEEEEeeecCcc----cCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCC-------------C
Q psy10859 74 VVT-VGQFRIGLCHGHDI----IPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP-------------W 135 (224)
Q Consensus 74 ~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~-------------~ 135 (224)
.++ .++++++++..... .+....++++||+++|.. ..++..|+++|.++... .
T Consensus 295 SFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~---------a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~ 365 (496)
T TIGR03767 295 TFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA---------SSDTLFVLFSHHTSWSMVNELTDPVDPGEKR 365 (496)
T ss_pred EEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc---------CCCCCEEEEECCCCccccccccccccccccc
Confidence 345 66778777654211 233467889999988731 22456899999765321 1
Q ss_pred CCHHHHHHHhhhc-CCcEEEECCCCCCceEEE---------cCEEEEcCCCCCCCCCCCCCCCCCeEEEEEE---eCCeE
Q psy10859 136 GDPEALALLQRQL-DVDILISGHTHKFEAYEH---------ENKFYINPGSATGAFNPLEPKVNPSFVLMDI---QSSNV 202 (224)
Q Consensus 136 ~~~~~l~~~~~~~-~~~~vi~GH~H~~~~~~~---------~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~---~~~~~ 202 (224)
.+.+.+.++++.+ ++..+++||+|....... .+.+-|+++|..-. +..|.++|+ .++.+
T Consensus 366 ~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdf--------Pq~~Ri~Ei~~n~dgt~ 437 (496)
T TIGR03767 366 HLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDF--------PQQGRIIELADNQDGTV 437 (496)
T ss_pred cCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccC--------CCCceEEEEEeCCCCcE
Confidence 2335677777776 899999999999876543 27889999998842 678999999 57888
Q ss_pred EEEEEEee
Q psy10859 203 VTYVYQLI 210 (224)
Q Consensus 203 ~~~~~~~~ 210 (224)
++....++
T Consensus 438 si~tt~vd 445 (496)
T TIGR03767 438 SIFTTLIE 445 (496)
T ss_pred EEEEEecc
Confidence 88888775
No 59
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.43 E-value=9.9e-12 Score=98.18 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=81.8
Q ss_pred cCCCccEEEEcCCCCC--h--------HHHHHHHhc------CCcEEEecCCCCCCC--------------CCC-cceEE
Q psy10859 27 VPGRIQHILCTGNLVT--K--------ETFDYLKTL------ASDVHVVRGDFDEGT--------------SYP-EKKVV 75 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~--~--------~~~~~l~~l------~~~v~~v~GNHD~~~--------------~~~-~~~~~ 75 (224)
+..+||+|+++|||+| + +.++.+.++ ..|++.|+||||... .|. ....+
T Consensus 42 ~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg~~~~~~ 121 (257)
T cd08163 42 KQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYFGPTSRVI 121 (257)
T ss_pred HhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHHHhCCCceEE
Confidence 4568999999999998 1 123444333 258999999999753 111 13567
Q ss_pred EeCCEEEEeeecCcccCCC----CHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC----------------
Q psy10859 76 TVGQFRIGLCHGHDIIPWG----DPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW---------------- 135 (224)
Q Consensus 76 ~~~~~~~~~~~g~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~---------------- 135 (224)
..++.+++++.+....... .....+|+.+.+. ....+..+|+++|.+.+.+.
T Consensus 122 ~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~--------~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~ 193 (257)
T cd08163 122 DVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSA--------MKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPY 193 (257)
T ss_pred EECCEEEEEEccccccCCcccccchhHHHHHHhhhh--------ccCCCCcEEEEeccccccCCCCCCCCccccCCCCCC
Confidence 8899999887763222221 2234556654331 11234567999996642110
Q ss_pred ---------CCHHHHHHHhhhcCCcEEEECCCCCCceEE
Q psy10859 136 ---------GDPEALALLQRQLDVDILISGHTHKFEAYE 165 (224)
Q Consensus 136 ---------~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~ 165 (224)
.+++....+++..++.+|++||.|......
T Consensus 194 ~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 194 GYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred CCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 122334566777899999999999887654
No 60
>KOG2310|consensus
Probab=99.41 E-value=1.4e-11 Score=102.68 Aligned_cols=211 Identities=17% Similarity=0.217 Sum_probs=121.6
Q ss_pred CeEEEEeeccCCCCCCC------ChHHHHH---hhcCCCccEEEEcCCCCC---------hHHHHHHHh-----------
Q psy10859 1 MLVLVLGDLHIPHRTSG------LPAKFKK---LLVPGRIQHILCTGNLVT---------KETFDYLKT----------- 51 (224)
Q Consensus 1 mki~~isDiH~~~~~~~------~~~~l~~---~~~~~~~D~vi~~GDl~~---------~~~~~~l~~----------- 51 (224)
|||++.+|+|.++...+ -...|.+ +.+++++|+|+..||||. ..+++.|+.
T Consensus 14 irILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le 93 (646)
T KOG2310|consen 14 IRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLE 93 (646)
T ss_pred eEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeE
Confidence 79999999999775321 1123444 445889999999999997 244444442
Q ss_pred -------------------------cCCcEEEecCCCCCCCCC---------------------Ccce------EEEeCC
Q psy10859 52 -------------------------LASDVHVVRGDFDEGTSY---------------------PEKK------VVTVGQ 79 (224)
Q Consensus 52 -------------------------l~~~v~~v~GNHD~~~~~---------------------~~~~------~~~~~~ 79 (224)
+++||+-|.||||..... .... .+-..|
T Consensus 94 ~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG 173 (646)
T KOG2310|consen 94 ILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKG 173 (646)
T ss_pred EecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccC
Confidence 136999999999987511 1110 112233
Q ss_pred EEEEeeecCcccCCCCHH-HHHHHHH-hhcCCCCCCceeeeeCCeEEEeeccCCCCCCC---CHHHHHHHhhhcCCcEEE
Q psy10859 80 FRIGLCHGHDIIPWGDPE-ALALLQR-QLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWG---DPEALALLQRQLDVDILI 154 (224)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~-~~~~l~~-~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~---~~~~l~~~~~~~~~~~vi 154 (224)
..-+.++| ++-...+ ....+++ ... -..|... ...=+.+++.|+....... -++.+ +.. =.|+||
T Consensus 174 ~tklALYG---Lg~irDeRL~R~Fk~~~V~-f~rPe~~--e~dWFNllvlHQNr~~h~~tn~lpE~f---lp~-F~Dlvi 243 (646)
T KOG2310|consen 174 STKLALYG---LGSIRDERLYRMFKNGKVT-FLRPEEY--EDDWFNLLVLHQNRSKHRPTNFLPEQF---LPD-FLDLVI 243 (646)
T ss_pred ceeEEEee---ccccchHHHHHHHHhCceE-EecCccc--cccceeeEEEeecccCCCCcccCcHhH---hhh-hhhhee
Confidence 33345556 2222222 2223322 110 0111111 1222578999965422211 13333 222 278999
Q ss_pred ECCCCCCceE----EEcCEEEEcCCCCCC-CCCCCCCCCCCeEEEEEEeCCeEEEEEEEee-cCceeEEEEeec
Q psy10859 155 SGHTHKFEAY----EHENKFYINPGSATG-AFNPLEPKVNPSFVLMDIQSSNVVTYVYQLI-ADEVTVERIDYK 222 (224)
Q Consensus 155 ~GH~H~~~~~----~~~~~~~in~Gs~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 222 (224)
-||-|.-.+. ...+.+++.|||... ++.|. +..+....+++|.+.+...+-++|. -.+|.-+.|.++
T Consensus 244 WGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~g-Ea~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~ 316 (646)
T KOG2310|consen 244 WGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPG-EAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLA 316 (646)
T ss_pred eccccccccCcccccccceeeecCCCccccccCcc-cccCceEEEEEecCCcccccccccceecceeeeeeEec
Confidence 9999985443 335778899999764 22221 2346678889999998888877775 556666666554
No 61
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=99.41 E-value=6e-13 Score=99.27 Aligned_cols=64 Identities=27% Similarity=0.423 Sum_probs=42.9
Q ss_pred EEEeeccCCCCC------CCC--------hHHHHHhhcCCCccEEEEcCCCCC------hHHH-----HHHHhcCCcEEE
Q psy10859 4 LVLGDLHIPHRT------SGL--------PAKFKKLLVPGRIQHILCTGNLVT------KETF-----DYLKTLASDVHV 58 (224)
Q Consensus 4 ~~isDiH~~~~~------~~~--------~~~l~~~~~~~~~D~vi~~GDl~~------~~~~-----~~l~~l~~~v~~ 58 (224)
+++||+|++... ..+ .+.+.+.+++.++|.|+++||+++ .... ..+...+.++++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVIL 80 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEE
Confidence 479999986421 111 124455566789999999999997 1111 122233679999
Q ss_pred ecCCCCCCC
Q psy10859 59 VRGDFDEGT 67 (224)
Q Consensus 59 v~GNHD~~~ 67 (224)
|+||||...
T Consensus 81 i~GNHD~~~ 89 (172)
T cd07391 81 IRGNHDGGL 89 (172)
T ss_pred EcccCccch
Confidence 999999863
No 62
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=87.60 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=76.2
Q ss_pred eEEEEeeccCCCCC-------CCC---hHHHHHhhc--CCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCC
Q psy10859 2 LVLVLGDLHIPHRT-------SGL---PAKFKKLLV--PGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFD 64 (224)
Q Consensus 2 ki~~isDiH~~~~~-------~~~---~~~l~~~~~--~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD 64 (224)
++.++||+|.+... .+. .+.+..-++ -..-|.|.++||+.- +.....++.++..+.+|+||||
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~GNhD 84 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPGNHD 84 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCCcEEEeeCCCC
Confidence 47899999986542 111 112222222 224689999999997 4566677788888999999999
Q ss_pred CCCCCCcceEEEeCCEEEEeeecCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHH
Q psy10859 65 EGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALL 144 (224)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~ 144 (224)
-.-.... ++ + .+..+ ....++.++.+++++|.+...+..........
T Consensus 85 k~~~~~~--------------~~-----~--~~svq------------~f~~ie~dg~~~~LsHyP~~~~~~~~~~~r~~ 131 (186)
T COG4186 85 KCHPMYR--------------HA-----Y--FDSVQ------------AFQRIEWDGEDVYLSHYPRPGQDHPGMESRFD 131 (186)
T ss_pred CCccccc--------------ch-----h--hHHHH------------HHHheeECCeEEEEEeCCCCCCCCcchhhhHH
Confidence 8520000 00 0 01111 12346778999999996543322111111111
Q ss_pred hhhcCCcEEEECCCCCCceE
Q psy10859 145 QRQLDVDILISGHTHKFEAY 164 (224)
Q Consensus 145 ~~~~~~~~vi~GH~H~~~~~ 164 (224)
-...+.++.|+||.|.++..
T Consensus 132 y~~~~~~llIHGH~H~~~~k 151 (186)
T COG4186 132 YLRLRVPLLIHGHLHSQFPK 151 (186)
T ss_pred HHhccCCeEEeccccccccC
Confidence 12346889999999985543
No 63
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.38 E-value=2e-11 Score=96.56 Aligned_cols=164 Identities=18% Similarity=0.225 Sum_probs=94.4
Q ss_pred CeEEEEeeccCCCCC----CCCh--HHHHHhhcCCCcc-EEEEcCCCCC----------hHHHHHHHhcCCcEEEecCCC
Q psy10859 1 MLVLVLGDLHIPHRT----SGLP--AKFKKLLVPGRIQ-HILCTGNLVT----------KETFDYLKTLASDVHVVRGDF 63 (224)
Q Consensus 1 mki~~isDiH~~~~~----~~~~--~~l~~~~~~~~~D-~vi~~GDl~~----------~~~~~~l~~l~~~v~~v~GNH 63 (224)
++|+++||+|+.... ..+. ..+.+.++.+++| .++.+||+++ ...++.++.++ ..++++|||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-~d~~~~GNH 79 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG-YDAVTIGNH 79 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC-CCEEeeccc
Confidence 589999999964310 1111 2333334556677 6789999998 25667777775 455778999
Q ss_pred CCCC------------CCC-------------------cceEEEeCCEEEEeeecCcc-cC-CCCH---------HHHHH
Q psy10859 64 DEGT------------SYP-------------------EKKVVTVGQFRIGLCHGHDI-IP-WGDP---------EALAL 101 (224)
Q Consensus 64 D~~~------------~~~-------------------~~~~~~~~~~~~~~~~g~~~-~~-~~~~---------~~~~~ 101 (224)
|+.. .++ ....++.+|.++.++.-... .+ +..+ ...+.
T Consensus 80 e~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (252)
T cd00845 80 EFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDLAEA 159 (252)
T ss_pred cccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCceecCHHHH
Confidence 9864 111 02356777887765431100 00 0000 01111
Q ss_pred HHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhh-cCCcEEEECCCCCCceE--EEcCEEEEcCCCCC
Q psy10859 102 LQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQ-LDVDILISGHTHKFEAY--EHENKFYINPGSAT 178 (224)
Q Consensus 102 l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~-~~~~~vi~GH~H~~~~~--~~~~~~~in~Gs~~ 178 (224)
+++. ........+..|+++|.+... .. ++++. .++|++++||+|..... ..++++++.+|+-+
T Consensus 160 ~~~~-------~~~~~~~~D~vIvl~H~g~~~----~~---~la~~~~giDlvlggH~H~~~~~~~~~~~~~v~~~g~~~ 225 (252)
T cd00845 160 VAVA-------EELLAEGADVIILLSHLGLDD----DE---ELAEEVPGIDVILGGHTHHLLEEPEVVNGTLIVQAGKYG 225 (252)
T ss_pred HHHH-------HHHHhCCCCEEEEEeccCccc----hH---HHHhcCCCccEEEcCCcCcccCCCcccCCEEEEeCChhH
Confidence 1100 001122356678999954321 12 22222 68999999999987654 56899999998877
Q ss_pred C
Q psy10859 179 G 179 (224)
Q Consensus 179 ~ 179 (224)
.
T Consensus 226 ~ 226 (252)
T cd00845 226 K 226 (252)
T ss_pred c
Confidence 3
No 64
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.38 E-value=6.3e-12 Score=93.47 Aligned_cols=108 Identities=26% Similarity=0.236 Sum_probs=65.8
Q ss_pred HHHHhhcCCCccEEEEcCCCCC----------hHHHHHHHhc---------CCcEEEecCCCCCCCCCCcceEEEeCCEE
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT----------KETFDYLKTL---------ASDVHVVRGDFDEGTSYPEKKVVTVGQFR 81 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l---------~~~v~~v~GNHD~~~~~~~~~~~~~~~~~ 81 (224)
.+.+.++..+||+|+++||+++ .+..+.++++ +.|+++|+||||... ..
T Consensus 36 ~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~--~~---------- 103 (171)
T cd07384 36 AFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY--GE---------- 103 (171)
T ss_pred HHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC--CC----------
Confidence 3455566889999999999998 1233333332 468999999999962 00
Q ss_pred EEeeecCcccCCCC-HHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCC
Q psy10859 82 IGLCHGHDIIPWGD-PEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHK 160 (224)
Q Consensus 82 ~~~~~g~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~ 160 (224)
... .....-.+.. -|+++|.+. . .+++..+++++++||+|.
T Consensus 104 -----------~~~~~~~~~~f~~~-----------------fi~l~H~p~------~----~~~~~~~~~~~lsGH~H~ 145 (171)
T cd07384 104 -----------VISFPEVVDRFERY-----------------FILLTHIPL------Y----RLLDTIKPVLILSGHDHD 145 (171)
T ss_pred -----------ccccHHHHHHHHhh-----------------heeEECCcc------H----HHHhccCceEEEeCcccC
Confidence 000 1111111110 188999432 1 134567899999999998
Q ss_pred CceEEEc----CEEEEcCCCCC
Q psy10859 161 FEAYEHE----NKFYINPGSAT 178 (224)
Q Consensus 161 ~~~~~~~----~~~~in~Gs~~ 178 (224)
....... .+.-+...|++
T Consensus 146 ~~~~~~~~~~~~~~ei~v~S~s 167 (171)
T cd07384 146 QCEVVHSSKAGSVREITVKSFS 167 (171)
T ss_pred CeEEEecCCCCCceEEeeccch
Confidence 8655433 35555555555
No 65
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=99.37 E-value=5.2e-12 Score=97.75 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=47.0
Q ss_pred eEEEEeeccCCCCC------CCCh--------HHHHHhhcCCCccEEEEcCCCCC--------hHHHHHHHhcCCcEEEe
Q psy10859 2 LVLVLGDLHIPHRT------SGLP--------AKFKKLLVPGRIQHILCTGNLVT--------KETFDYLKTLASDVHVV 59 (224)
Q Consensus 2 ki~~isDiH~~~~~------~~~~--------~~l~~~~~~~~~D~vi~~GDl~~--------~~~~~~l~~l~~~v~~v 59 (224)
+.+++||+|++... ..++ +++.+.+++.++|.|+++||+++ ++..++++++..++++|
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~V 95 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLILI 95 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEEE
Confidence 57899999986421 1111 13334445678999999999996 34556777777799999
Q ss_pred cCCCCCC
Q psy10859 60 RGDFDEG 66 (224)
Q Consensus 60 ~GNHD~~ 66 (224)
+||||..
T Consensus 96 ~GNHD~~ 102 (225)
T TIGR00024 96 RGNHDAL 102 (225)
T ss_pred CCCCCCc
Confidence 9999985
No 66
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.36 E-value=6.8e-11 Score=94.86 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=97.4
Q ss_pred CeEEEEeeccCCCCCC-----------CCh--HHHHHhhcCCCccEEEE-cCCCCCh----------------HHHHHHH
Q psy10859 1 MLVLVLGDLHIPHRTS-----------GLP--AKFKKLLVPGRIQHILC-TGNLVTK----------------ETFDYLK 50 (224)
Q Consensus 1 mki~~isDiH~~~~~~-----------~~~--~~l~~~~~~~~~D~vi~-~GDl~~~----------------~~~~~l~ 50 (224)
++|+++||+|+..... .+. ..+.+.++++++|.+++ +||+++. ..++.++
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln 80 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN 80 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence 4799999999853110 111 22333345567888887 9999971 2456777
Q ss_pred hcCCcEEEecCCCCCCC------------CC-----------------CcceEEEeC-CEEEEeeecCc--ccCCCCHH-
Q psy10859 51 TLASDVHVVRGDFDEGT------------SY-----------------PEKKVVTVG-QFRIGLCHGHD--IIPWGDPE- 97 (224)
Q Consensus 51 ~l~~~v~~v~GNHD~~~------------~~-----------------~~~~~~~~~-~~~~~~~~g~~--~~~~~~~~- 97 (224)
.++.. +++.||||+.. .+ ....+++.+ |.++.++.-.. ...+..+.
T Consensus 81 ~~g~d-~~~lGNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~ 159 (277)
T cd07410 81 ALGYD-AGTLGNHEFNYGLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNL 159 (277)
T ss_pred hcCCC-EEeecccCcccCHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccccccCccc
Confidence 77654 66789999774 11 112356778 88877543110 00011000
Q ss_pred --------HHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC----CCHHHHHHHhhh-cCCcEEEECCCCCCceE
Q psy10859 98 --------ALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW----GDPEALALLQRQ-LDVDILISGHTHKFEAY 164 (224)
Q Consensus 98 --------~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~----~~~~~l~~~~~~-~~~~~vi~GH~H~~~~~ 164 (224)
..+.+++.. .++.....+..|+++|....... ........+++. .++|++++||+|.....
T Consensus 160 ~~~~~~~d~~~~~~~~v------~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~ 233 (277)
T cd07410 160 IGGLKFTDPVETAKKYV------PKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPG 233 (277)
T ss_pred CCCcEEcCHHHHHHHHH------HHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEEeCCCcccccc
Confidence 001111110 00011234567889996543221 111122334444 68999999999998766
Q ss_pred -EEcCEEEEcCCCCCC
Q psy10859 165 -EHENKFYINPGSATG 179 (224)
Q Consensus 165 -~~~~~~~in~Gs~~~ 179 (224)
..++++++.+|+-+.
T Consensus 234 ~~~~~~~v~q~g~~g~ 249 (277)
T cd07410 234 PTVNGVPVVQPGNWGS 249 (277)
T ss_pred CCcCCEEEEcCChhhC
Confidence 678899999998883
No 67
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.35 E-value=4.9e-11 Score=96.60 Aligned_cols=143 Identities=20% Similarity=0.113 Sum_probs=87.5
Q ss_pred CCccEEEEcCCCCC-------hH---------HHHHHHhc--CCcEEEecCCCCCCCC--C-------------------
Q psy10859 29 GRIQHILCTGNLVT-------KE---------TFDYLKTL--ASDVHVVRGDFDEGTS--Y------------------- 69 (224)
Q Consensus 29 ~~~D~vi~~GDl~~-------~~---------~~~~l~~l--~~~v~~v~GNHD~~~~--~------------------- 69 (224)
.++|+||++||++. .+ +.+.+++. +.|++.++||||.... +
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~ 146 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKS 146 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHh
Confidence 38999999999997 11 22234433 5799999999998631 1
Q ss_pred --C----------cceEEE-eCCEEEEeeecCccc----------CCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEe
Q psy10859 70 --P----------EKKVVT-VGQFRIGLCHGHDII----------PWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGL 126 (224)
Q Consensus 70 --~----------~~~~~~-~~~~~~~~~~g~~~~----------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~ 126 (224)
+ ..+... .++.+++++...... ......+++|++++|... ...+...+++
T Consensus 147 ~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a-------~~~~~~v~I~ 219 (296)
T cd00842 147 WLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEA-------EQAGEKVWII 219 (296)
T ss_pred hcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHH-------HHCCCeEEEE
Confidence 0 012333 567777765532110 111356888999877321 1223456789
Q ss_pred eccCCCCCC-----CCHHHHHHHhhhcC--CcEEEECCCCCCceEEEc--------CEEEEcCCCCC
Q psy10859 127 CHGHDIIPW-----GDPEALALLQRQLD--VDILISGHTHKFEAYEHE--------NKFYINPGSAT 178 (224)
Q Consensus 127 ~H~~~~~~~-----~~~~~l~~~~~~~~--~~~vi~GH~H~~~~~~~~--------~~~~in~Gs~~ 178 (224)
+|.+|.... ...+.+..+++++. +..+++||+|........ ....+..+|++
T Consensus 220 ~HiPp~~~~~~~~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~~~~~~~~~~~~~~~~psit 286 (296)
T cd00842 220 GHIPPGVNSYDTLENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVFYDDNDTGEPINVALIAPSVT 286 (296)
T ss_pred eccCCCCcccccchHHHHHHHHHHHHHHHhhheeeecccccceEEEEeCCCCCCCceEEEEecCccC
Confidence 997664322 12355677777775 678999999998765431 23444555666
No 68
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.31 E-value=3.3e-11 Score=95.56 Aligned_cols=165 Identities=17% Similarity=0.207 Sum_probs=94.9
Q ss_pred CeEEEEeeccCCCCC--C---CCh--HHHHHhhcCCCcc-EEEEcCCCCC----------hHHHHHHHhcCCcEEEecCC
Q psy10859 1 MLVLVLGDLHIPHRT--S---GLP--AKFKKLLVPGRIQ-HILCTGNLVT----------KETFDYLKTLASDVHVVRGD 62 (224)
Q Consensus 1 mki~~isDiH~~~~~--~---~~~--~~l~~~~~~~~~D-~vi~~GDl~~----------~~~~~~l~~l~~~v~~v~GN 62 (224)
.+|++++|+|.-... . .+. ..+.+.++++++| +++.+||+++ +..++.++.++. -+.++||
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-d~~~~GN 79 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-DLACFGN 79 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-cEEeecc
Confidence 479999999942211 0 111 1233333455677 8999999997 356677877764 4668999
Q ss_pred CCCCC------------C-------------------CCcceEEEeCCEEEEeeecCcccCCC--------C---HHHHH
Q psy10859 63 FDEGT------------S-------------------YPEKKVVTVGQFRIGLCHGHDIIPWG--------D---PEALA 100 (224)
Q Consensus 63 HD~~~------------~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~--------~---~~~~~ 100 (224)
||+.. . ++....++.+|.++.++.= ....+. . .+..+
T Consensus 80 Hefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~-~~~~~~~~~~~~~~~~~~~d~~~ 158 (257)
T cd07406 80 HEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGL-VEEEWLETLTIDPEYVRYRDYVE 158 (257)
T ss_pred cccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEE-ecccccccccCCCCcceEcCHHH
Confidence 99864 0 1223456677888765321 000000 0 00111
Q ss_pred HHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 101 LLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 101 ~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
.+++.. ........+..|+++|.... ....+.+. -.++|+++.||+|.......+++.++.+|+-+.
T Consensus 159 ~~~~~v------~~~~~~~~D~iVvl~H~g~~----~d~~la~~--~~~iD~IlgGH~H~~~~~~~~~t~vv~~g~~g~ 225 (257)
T cd07406 159 TARELV------DELREQGADLIIALTHMRLP----NDKRLARE--VPEIDLILGGHDHEYILVQVGGTPIVKSGSDFR 225 (257)
T ss_pred HHHHHH------HHHHhCCCCEEEEEeccCch----hhHHHHHh--CCCCceEEecccceeEeeeECCEEEEeCCcCcc
Confidence 111100 00111224567889995321 11222221 258999999999999887889999999998883
No 69
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=99.29 E-value=2.3e-10 Score=90.76 Aligned_cols=190 Identities=15% Similarity=0.209 Sum_probs=103.6
Q ss_pred CeEEEEeeccCCCCC-----CCCh--HHHHHhhcCCCccEEEEcCCCCC----------hHHHHHHHhcCCcEEEecCCC
Q psy10859 1 MLVLVLGDLHIPHRT-----SGLP--AKFKKLLVPGRIQHILCTGNLVT----------KETFDYLKTLASDVHVVRGDF 63 (224)
Q Consensus 1 mki~~isDiH~~~~~-----~~~~--~~l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l~~~v~~v~GNH 63 (224)
++|+++||+|+.... ..+. ..+.+.++.+..++++.+||+++ ...++.++.++..+ .+.|||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~d~-~~~GNH 79 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGYDA-VTPGNH 79 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCCcE-Eccccc
Confidence 589999999974321 0111 12222233336789999999998 35667788777666 567999
Q ss_pred CCCC------------CCC-----------------cceEEEeC-CEEEEeeecCc--ccCCCCHH---------HHHHH
Q psy10859 64 DEGT------------SYP-----------------EKKVVTVG-QFRIGLCHGHD--IIPWGDPE---------ALALL 102 (224)
Q Consensus 64 D~~~------------~~~-----------------~~~~~~~~-~~~~~~~~g~~--~~~~~~~~---------~~~~l 102 (224)
|+.. .++ ....++.+ |.++.++.-.. ...+..+. -.+.+
T Consensus 80 efd~G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~ 159 (257)
T cd07408 80 EFDYGLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDPIEEA 159 (257)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCCcEEecHHHHH
Confidence 9864 111 12344666 88776542110 00011111 01111
Q ss_pred HHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCC--HHHHHHHhhhcCCcEEEECCCCCCceE---EEcCEEEEcCCCC
Q psy10859 103 QRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGD--PEALALLQRQLDVDILISGHTHKFEAY---EHENKFYINPGSA 177 (224)
Q Consensus 103 ~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~--~~~l~~~~~~~~~~~vi~GH~H~~~~~---~~~~~~~in~Gs~ 177 (224)
++.. ......+..+..|+++|......... ...++. +..++|+++.||+|..... ..++++++.+|+-
T Consensus 160 ~~~~-----v~~l~~~~~D~iIvl~H~G~~~~~~~~~~~~la~--~~~giDvIigGH~H~~~~~~~~~~~~~~ivq~g~~ 232 (257)
T cd07408 160 KKVI-----VAALKAKGADVIVALGHLGVDRTSSPWTSTELAA--NVTGIDLIIDGHSHTTIEIGKKDGNNVLLTQTGAY 232 (257)
T ss_pred HHHH-----HHHHHhCCCCEEEEEeCcCcCCCCCCccHHHHHH--hCCCceEEEeCCCcccccCcccccCCeEEEcCChH
Confidence 1110 00111123466788999654322111 122222 2358999999999997654 3588999999887
Q ss_pred CCCCCCCCCCCCCeEEEEEEeCCeEEEEEE
Q psy10859 178 TGAFNPLEPKVNPSFVLMDIQSSNVVTYVY 207 (224)
Q Consensus 178 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 207 (224)
+. .-+..-+++++++.++..+
T Consensus 233 g~---------~vg~l~l~~~~~~~~~~~~ 253 (257)
T cd07408 233 LA---------NIGEVTLVFDTTTGTIKLI 253 (257)
T ss_pred Hc---------eEEEEEEEEECCCceEEEe
Confidence 73 2344445555554444433
No 70
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=99.26 E-value=6.5e-11 Score=98.28 Aligned_cols=190 Identities=21% Similarity=0.287 Sum_probs=106.3
Q ss_pred eEEEEeeccCCCCCCCChHHH---HHhhc-----CCCccEEEEcCCCCC---------------------hHHHHHHHhc
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKF---KKLLV-----PGRIQHILCTGNLVT---------------------KETFDYLKTL 52 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l---~~~~~-----~~~~D~vi~~GDl~~---------------------~~~~~~l~~l 52 (224)
+.+++||+|.+... -...++ .+.++ ..++-.++++||++| .+..+.|.+.
T Consensus 227 ~v~~isDih~GSk~-F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~v 305 (481)
T COG1311 227 YVALISDIHRGSKE-FLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQV 305 (481)
T ss_pred EEEEEeeeecccHH-HHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhC
Confidence 67999999975541 122233 33332 224578999999998 2344455554
Q ss_pred --CCcEEEecCCCCCCC-CC---------------------CcceEEEeCCEEEEeeecCccc------CCCCH-HHHHH
Q psy10859 53 --ASDVHVVRGDFDEGT-SY---------------------PEKKVVTVGQFRIGLCHGHDII------PWGDP-EALAL 101 (224)
Q Consensus 53 --~~~v~~v~GNHD~~~-~~---------------------~~~~~~~~~~~~~~~~~g~~~~------~~~~~-~~~~~ 101 (224)
.+.+++.|||||..- .. .....+.++|..+.+.||.++. |..+. .-...
T Consensus 306 p~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~vP~~~~~~~~~a 385 (481)
T COG1311 306 PEHIKVFIMPGNHDAVRQALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKLVPGADYDSPLKA 385 (481)
T ss_pred CCCceEEEecCCCCccccccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhhCCCCCccchHHH
Confidence 468999999999873 11 2335677888888888885421 11001 11111
Q ss_pred HHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC---CCHHHHHHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCC
Q psy10859 102 LQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW---GDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSAT 178 (224)
Q Consensus 102 l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~---~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~ 178 (224)
++.- +..-|-.|.++. .-|+.-.-+.-+.-+|++.+||+|......+.|+.++|.|++.
T Consensus 386 me~l------------------Lk~rHlaPtygg~~p~aP~~kD~lVIeevPDv~~~Ghvh~~g~~~y~gv~~vns~T~q 447 (481)
T COG1311 386 MEEL------------------LKRRHLAPTYGGTLPIAPETKDYLVIEEVPDVFHTGHVHKFGTGVYEGVNLVNSGTWQ 447 (481)
T ss_pred HHHH------------------HHhcccCCCCCCccccccCCcCceeeccCCcEEEEccccccceeEEeccceEEeeeec
Confidence 1110 112233332221 1111111122234689999999999999988889999998887
Q ss_pred CCCCCCCCCCCCeEE-EEEEeCCeEEEEEEEeecCceeEEEE
Q psy10859 179 GAFNPLEPKVNPSFV-LMDIQSSNVVTYVYQLIADEVTVERI 219 (224)
Q Consensus 179 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
. ...|- ++.++..--.+.++++....+++++|
T Consensus 448 ~---------qTefqk~vni~p~~~~v~vv~~~~~~v~~~~F 480 (481)
T COG1311 448 E---------QTEFQKMVNINPTPGNVPVVDFDSRSVKVLDF 480 (481)
T ss_pred c---------hhccceEEEecCcccceeEEecccccceeccC
Confidence 3 22232 23333333344556665555554443
No 71
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=99.26 E-value=5.7e-11 Score=93.87 Aligned_cols=158 Identities=17% Similarity=0.114 Sum_probs=87.1
Q ss_pred EEEEeeccCCCCCCCChHHHHHhh--cCCCccEEEEcCCCCCh-------------------HHHHHHHh---cCCcEEE
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLL--VPGRIQHILCTGNLVTK-------------------ETFDYLKT---LASDVHV 58 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~--~~~~~D~vi~~GDl~~~-------------------~~~~~l~~---l~~~v~~ 58 (224)
|++.+|+|+... .+.+.+...- +..++|+||++||+... +..+.++. ...|+++
T Consensus 1 i~v~Gd~HG~~~--~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 1 IAVEGCCHGELD--KIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred CEEEecCCccHH--HHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 589999998321 1111111111 13469999999999851 01122222 3457899
Q ss_pred ecCCCCCCC---CC-------C------cceEEEeCCEEEEeeecCcc----c------CCCCHHHHHHHHHhhcCCCCC
Q psy10859 59 VRGDFDEGT---SY-------P------EKKVVTVGQFRIGLCHGHDI----I------PWGDPEALALLQRQLDGTSYP 112 (224)
Q Consensus 59 v~GNHD~~~---~~-------~------~~~~~~~~~~~~~~~~g~~~----~------~~~~~~~~~~l~~~l~~~~~~ 112 (224)
|.||||... .+ + ....+++.|.+++.+.|... . +..+...+..+.. ..+..
T Consensus 79 i~GNHE~~~~l~~l~~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y~---~r~~~ 155 (262)
T cd00844 79 IGGNHEASNYLWELPYGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYH---VRNIE 155 (262)
T ss_pred ECCCCCCHHHHHhhcCCCeecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhhh---hhHHH
Confidence 999999642 11 1 12356678888887766210 0 0011111111000 00000
Q ss_pred C-ceeeeeCCeEEEeeccCCCCC-----------------------CCCHHHHHHHhhhcCCcEEEECCCCCCceEE
Q psy10859 113 E-KKVVTVGQFRIGLCHGHDIIP-----------------------WGDPEALALLQRQLDVDILISGHTHKFEAYE 165 (224)
Q Consensus 113 ~-~~~~~~~~~~i~~~H~~~~~~-----------------------~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~ 165 (224)
. .+.....+..|+++|..|... ..+...+..+++..+++++++||.|..+...
T Consensus 156 ~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f~~~ 232 (262)
T cd00844 156 VFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFAAL 232 (262)
T ss_pred HHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCccccee
Confidence 0 000112356899999887432 1244556778889999999999999966544
No 72
>KOG1378|consensus
Probab=99.23 E-value=3.2e-09 Score=88.11 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=126.7
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC---------hHHHHHHHhc--CCcEEEecCCCCCCCC--
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT---------KETFDYLKTL--ASDVHVVRGDFDEGTS-- 68 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l--~~~v~~v~GNHD~~~~-- 68 (224)
++++++|+=....... .+....+..++|+|++.|||.. .+..+.++.+ ..|..++.||||....
T Consensus 149 ~~~i~GDlG~~~~~~s---~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~ 225 (452)
T KOG1378|consen 149 RAAIFGDMGCTEPYTS---TLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQ 225 (452)
T ss_pred eEEEEccccccccccc---hHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccccccCCCc
Confidence 6788888765332111 1222222336999999999996 2344444443 4799999999997641
Q ss_pred -----------CC---------cceEEEeCCEEEEeeecCcccC-CCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEee
Q psy10859 69 -----------YP---------EKKVVTVGQFRIGLCHGHDIIP-WGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLC 127 (224)
Q Consensus 69 -----------~~---------~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~ 127 (224)
+| ..+.++.+++.++++....... .....+.+||+++|...+.+ .-...|++.
T Consensus 226 ~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~------~tPWlIv~~ 299 (452)
T KOG1378|consen 226 PCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRK------KTPWLIVQG 299 (452)
T ss_pred ccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhccc------CCCeEEEEe
Confidence 11 2356888899988765422111 12345778999988432221 034567788
Q ss_pred ccCCCCCC-----------CCHHHHHHHhhhcCCcEEEECCCCCCceE-E-----------------EcCEEEEcCCCCC
Q psy10859 128 HGHDIIPW-----------GDPEALALLQRQLDVDILISGHTHKFEAY-E-----------------HENKFYINPGSAT 178 (224)
Q Consensus 128 H~~~~~~~-----------~~~~~l~~~~~~~~~~~vi~GH~H~~~~~-~-----------------~~~~~~in~Gs~~ 178 (224)
|-+.++.. .....|+.++-++++|+++.||.|..... . ..+..+|.+|+.+
T Consensus 300 HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G 379 (452)
T KOG1378|consen 300 HRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGG 379 (452)
T ss_pred cccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCC
Confidence 84433211 11235788888999999999999986431 1 1134566677766
Q ss_pred CC--C------CCCC---CCCCCeEEEEEEeCCeE-EEEEEEe-ecCceeEEEEeecc
Q psy10859 179 GA--F------NPLE---PKVNPSFVLMDIQSSNV-VTYVYQL-IADEVTVERIDYKK 223 (224)
Q Consensus 179 ~~--~------~~~~---~~~~~~~~~i~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 223 (224)
+. . .|.+ ..+.-||++|++.+++- .+...+- +......+.|-+.|
T Consensus 380 ~~e~~~~~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k 437 (452)
T KOG1378|consen 380 NHEHLDPFSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIK 437 (452)
T ss_pred cccccCcccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEc
Confidence 31 1 1111 24567899999987443 4444444 23355556665554
No 73
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.21 E-value=1.9e-11 Score=97.27 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=49.8
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc-CCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV-PGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
|++++|||||++.. .+.+.+.+ +. ..+.|.++++||+++ .++++.+.+++.++++|.||||...
T Consensus 1 M~~~vIGDIHG~~~--~l~~ll~~-~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~~l 70 (275)
T PRK00166 1 MATYAIGDIQGCYD--ELQRLLEK-IDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDLHL 70 (275)
T ss_pred CcEEEEEccCCCHH--HHHHHHHh-cCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhHHH
Confidence 99999999999653 33222222 22 347899999999999 6888888888778999999999853
No 74
>KOG2679|consensus
Probab=99.19 E-value=3.5e-10 Score=87.21 Aligned_cols=209 Identities=17% Similarity=0.206 Sum_probs=118.9
Q ss_pred CeEEEEeeccCCCCCCCChH-----HHHHhhcCCCccEEEEcCCCCC---------hHHHHHHHh------cCCcEEEec
Q psy10859 1 MLVLVLGDLHIPHRTSGLPA-----KFKKLLVPGRIQHILCTGNLVT---------KETFDYLKT------LASDVHVVR 60 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~-----~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~------l~~~v~~v~ 60 (224)
.+|++++|.=... .+.+ .+.++-++.++|+|+.+||=+. +..-+.+.+ +..|.|.|.
T Consensus 44 lsflvvGDwGr~g---~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vl 120 (336)
T KOG2679|consen 44 LSFLVVGDWGRRG---SFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVL 120 (336)
T ss_pred eEEEEEcccccCC---chhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhhhc
Confidence 4789999976311 2211 2233335678999999999774 333344443 346999999
Q ss_pred CCCCCCCCC-----------------Ccc-----eEEEeCCE--EEE-----eeecCcccCCCC-HHHHHHHHHhhcCCC
Q psy10859 61 GDFDEGTSY-----------------PEK-----KVVTVGQF--RIG-----LCHGHDIIPWGD-PEALALLQRQLDGTS 110 (224)
Q Consensus 61 GNHD~~~~~-----------------~~~-----~~~~~~~~--~~~-----~~~g~~~~~~~~-~~~~~~l~~~l~~~~ 110 (224)
||||+..+. +.. ..++.... ... ....+++..|.. ......++..+. .
T Consensus 121 GNHDyrGnV~AQls~~l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~--~ 198 (336)
T KOG2679|consen 121 GNHDYRGNVEAQLSPVLRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLS--W 198 (336)
T ss_pred cCccccCchhhhhhHHHHhhccceecccHHhhcceeeeeeccccccchhhheecccccccccccCChHHHHHHHHHH--H
Confidence 999998511 100 01111111 000 011112233321 111222222221 1
Q ss_pred CCCceeeeeCCeEEEeeccCCCCCC--CC----HHHHHHHhhhcCCcEEEECCCCCCce-EE-EcCEEEEcCCCCCCCCC
Q psy10859 111 YPEKKVVTVGQFRIGLCHGHDIIPW--GD----PEALALLQRQLDVDILISGHTHKFEA-YE-HENKFYINPGSATGAFN 182 (224)
Q Consensus 111 ~~~~~~~~~~~~~i~~~H~~~~~~~--~~----~~~l~~~~~~~~~~~vi~GH~H~~~~-~~-~~~~~~in~Gs~~~~~~ 182 (224)
+...+.....+.+|++-|.+..... .+ .+.+..+++..++++.++||-|.-.- .. ..++-|+-.|+.+..|.
T Consensus 199 le~~L~~S~a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~ 278 (336)
T KOG2679|consen 199 LEVALKASRAKWKIVVGHHPIKSAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWR 278 (336)
T ss_pred HHHHHHHhhcceEEEecccceehhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccC
Confidence 1122234456788999884432211 11 34567788899999999999997543 22 56788888887776553
Q ss_pred CCC-----C-------CCCCeEEEEEEeCCeEEEEEEEeecCce
Q psy10859 183 PLE-----P-------KVNPSFVLMDIQSSNVVTYVYQLIADEV 214 (224)
Q Consensus 183 ~~~-----~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 214 (224)
..+ . -...||.-++++..+.++.|++.-+..+
T Consensus 279 g~~~~~~~~p~~lkF~YdgqGfmsv~is~~e~~vvfyD~~G~~L 322 (336)
T KOG2679|consen 279 GTDHNPEVNPKELKFYYDGQGFMSVEISHSEARVVFYDVSGKVL 322 (336)
T ss_pred CCccCCccChhheEEeeCCCceEEEEEecceeEEEEEeccCceE
Confidence 311 0 1456899999999999999988866554
No 75
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.18 E-value=1.3e-10 Score=92.02 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=44.4
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcC-----CCccEEEEcCCCCC-----hHHHHHHHhcCC-----cEEEecCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVP-----GRIQHILCTGNLVT-----KETFDYLKTLAS-----DVHVVRGDFDEG 66 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~-----~~~D~vi~~GDl~~-----~~~~~~l~~l~~-----~v~~v~GNHD~~ 66 (224)
++++|||||++.. .+.+.+..+-.. ...+.+|++||++| .++++.|.++.. +++++.||||.+
T Consensus 3 ~iyaIGDIHG~~d--~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 3 VVICVGDIHGYIS--KLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred eEEEEEeccCCHH--HHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHH
Confidence 5899999998553 232322222111 24678999999999 678888877521 478999999976
Q ss_pred C
Q psy10859 67 T 67 (224)
Q Consensus 67 ~ 67 (224)
.
T Consensus 81 ~ 81 (304)
T cd07421 81 F 81 (304)
T ss_pred H
Confidence 4
No 76
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.17 E-value=3.8e-10 Score=87.69 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=45.0
Q ss_pred EEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC---CcEEEecCCCCCCC
Q psy10859 4 LVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA---SDVHVVRGDFDEGT 67 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~---~~v~~v~GNHD~~~ 67 (224)
+++||+|++.. .+. .+.+.+.....|.+|++||++| .++++.+..+. .+++++.||||.+.
T Consensus 1 ~~igDiHg~~~--~l~-~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~~~ 69 (225)
T cd00144 1 YVIGDIHGCLD--DLL-RLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHEDML 69 (225)
T ss_pred CEEeCCCCCHH--HHH-HHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchhhh
Confidence 47999998542 222 2233333457999999999998 67788887764 38999999999874
No 77
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=99.14 E-value=2.2e-08 Score=79.81 Aligned_cols=166 Identities=20% Similarity=0.201 Sum_probs=89.9
Q ss_pred CeEEEEeeccCCCCCC-----------C---C--hHHH---HHhhcCC-CccEE-EEcCCCCC----------hHHHHHH
Q psy10859 1 MLVLVLGDLHIPHRTS-----------G---L--PAKF---KKLLVPG-RIQHI-LCTGNLVT----------KETFDYL 49 (224)
Q Consensus 1 mki~~isDiH~~~~~~-----------~---~--~~~l---~~~~~~~-~~D~v-i~~GDl~~----------~~~~~~l 49 (224)
..|++++|+|+..... . . ...+ .+.++++ ++|.+ +.+||+++ ...++.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l 80 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDAL 80 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHH
Confidence 3689999999842210 0 0 1223 3333455 78887 46999998 3556777
Q ss_pred HhcCCcEEEecCCCCCCC------------CC-----------------CcceEEEeCCEEEEeeecCccc--CCCCH--
Q psy10859 50 KTLASDVHVVRGDFDEGT------------SY-----------------PEKKVVTVGQFRIGLCHGHDII--PWGDP-- 96 (224)
Q Consensus 50 ~~l~~~v~~v~GNHD~~~------------~~-----------------~~~~~~~~~~~~~~~~~g~~~~--~~~~~-- 96 (224)
+.++.. ++.||||+.. .+ +....++.+|.++.++.-.... .+...
T Consensus 81 ~~~g~d--a~~GNHefd~g~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~ 158 (264)
T cd07411 81 NALGVD--AMVGHWEFTYGPERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRF 158 (264)
T ss_pred HhhCCe--EEecccccccCHHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCC
Confidence 776543 3339999874 11 1123456788887654211000 00000
Q ss_pred -------HHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCce---EEE
Q psy10859 97 -------EALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEA---YEH 166 (224)
Q Consensus 97 -------~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~---~~~ 166 (224)
...+.+++.+ .........+..|+++|.... ....+.+ +..++|+++.||+|.... ...
T Consensus 159 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~iI~l~H~g~~----~~~~la~--~~~~iDlilgGH~H~~~~~~~~~~ 227 (264)
T cd07411 159 TPGLTFGIREEELQEVV-----VKLRREEGVDVVVLLSHNGLP----VDVELAE--RVPGIDVILSGHTHERTPKPIIAG 227 (264)
T ss_pred CCCcEECCHHHHHHHHH-----HHHHHhCCCCEEEEEecCCch----hhHHHHh--cCCCCcEEEeCcccccccCccccc
Confidence 0011111110 000011234667889995321 1112221 236799999999997653 346
Q ss_pred cCEEEEcCCCCCC
Q psy10859 167 ENKFYINPGSATG 179 (224)
Q Consensus 167 ~~~~~in~Gs~~~ 179 (224)
++++++.+|+-+.
T Consensus 228 ~~t~v~~~g~~~~ 240 (264)
T cd07411 228 GGTLVVEAGSHGK 240 (264)
T ss_pred CCEEEEEcCcccc
Confidence 8899999998883
No 78
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.14 E-value=9.6e-10 Score=82.56 Aligned_cols=105 Identities=21% Similarity=0.291 Sum_probs=66.3
Q ss_pred HHhhcCCCccEEEEcCCCCC-------hHHHHHHH---hc-----CCcEEEecCCCCCCCCCCcceEEEeCCEEEEeeec
Q psy10859 23 KKLLVPGRIQHILCTGNLVT-------KETFDYLK---TL-----ASDVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHG 87 (224)
Q Consensus 23 ~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~---~l-----~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~g 87 (224)
..+++..+||+|+++|||+| .+..+.++ ++ +.|+++|+||||... . +
T Consensus 35 ~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~--~----------------~ 96 (195)
T cd08166 35 HLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGG--E----------------E 96 (195)
T ss_pred HHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCC--C----------------C
Confidence 44456778999999999999 23334333 32 369999999999852 0 0
Q ss_pred CcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCceEEEc
Q psy10859 88 HDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE 167 (224)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~ 167 (224)
. ...++.++-.++. + |+++|.++.. +.++ .+.....+.+++++++||.|........
T Consensus 97 ---~-~~~~~~v~RF~~~-----F------------i~lsH~P~~~-~~~~-~~~~~~~~~~p~~Ifs~H~H~s~~~~~~ 153 (195)
T cd08166 97 ---E-DPIESKIRRFEKY-----F------------IMLSHVPLLA-EGGQ-ALKHVVTDLDPDLIFSAHRHKSSIFMYD 153 (195)
T ss_pred ---C-CcCHHHHHHHHHh-----h------------eeeecccccc-cccH-HHHHHHHhcCceEEEEcCccceeeEEee
Confidence 0 0112222222211 1 8999965432 2222 4556667889999999999998876554
Q ss_pred C
Q psy10859 168 N 168 (224)
Q Consensus 168 ~ 168 (224)
.
T Consensus 154 ~ 154 (195)
T cd08166 154 R 154 (195)
T ss_pred c
Confidence 3
No 79
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=99.12 E-value=2.3e-08 Score=80.47 Aligned_cols=171 Identities=13% Similarity=0.167 Sum_probs=92.1
Q ss_pred CeEEEEeeccCCCCCC-----CCh--HHHHHhhcC-----CCccEEEEcCCCCC----------hHHHHHHHhcCCcEEE
Q psy10859 1 MLVLVLGDLHIPHRTS-----GLP--AKFKKLLVP-----GRIQHILCTGNLVT----------KETFDYLKTLASDVHV 58 (224)
Q Consensus 1 mki~~isDiH~~~~~~-----~~~--~~l~~~~~~-----~~~D~vi~~GDl~~----------~~~~~~l~~l~~~v~~ 58 (224)
++|++++|+|+..... .+. ..+.+.+++ ...-+++.+||++. ...++.++.++..+.
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~Da~- 79 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAM- 79 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCCcEE-
Confidence 4799999999853211 111 122222222 23457889999986 456678888876665
Q ss_pred ecCCCCCCC------------CCC----------------cceEEEeCCEEEEeeecCc-ccC-CCCHH---------HH
Q psy10859 59 VRGDFDEGT------------SYP----------------EKKVVTVGQFRIGLCHGHD-IIP-WGDPE---------AL 99 (224)
Q Consensus 59 v~GNHD~~~------------~~~----------------~~~~~~~~~~~~~~~~g~~-~~~-~~~~~---------~~ 99 (224)
++||||+.. .+| ...+++.+|.++.++.=.. ..+ +..+. ..
T Consensus 80 ~~GNHEfD~G~~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~~~f~d~~ 159 (285)
T cd07405 80 AVGNHEFDNPLEVLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEGIEFRPPI 159 (285)
T ss_pred eecccccccCHHHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecccccccccCcCCcCCcEEcCHH
Confidence 559999875 111 1234567888876542100 000 00000 00
Q ss_pred HHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC------CCHHHHHHHhhhcCCcEEEECCCCCCce----------
Q psy10859 100 ALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW------GDPEALALLQRQLDVDILISGHTHKFEA---------- 163 (224)
Q Consensus 100 ~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~------~~~~~l~~~~~~~~~~~vi~GH~H~~~~---------- 163 (224)
+-+++.. .++..+..+..|+++|....... .....+++.+...++|+++.||+|....
T Consensus 160 ~~~~~~v------~~lk~~~~D~VI~lsH~G~~~~~~~~~~~~~~~~lA~~~~~~giD~IigGHsH~~~~~~~~~~~~~~ 233 (285)
T cd07405 160 HEAKEVV------PELKQEKPDIVIAATHMGHYDNGEHGSNAPGDVEMARALPAGGLDLIVGGHSQDPVCMAAENKKQVD 233 (285)
T ss_pred HHHHHHH------HHHHHcCCCEEEEEecccccCCccccccCchHHHHHHhcCCCCCCEEEeCCCCccccCccccccccc
Confidence 1111000 00011234567889996542211 1112233222235899999999999763
Q ss_pred ---------EEEcCEEEEcCCCCC
Q psy10859 164 ---------YEHENKFYINPGSAT 178 (224)
Q Consensus 164 ---------~~~~~~~~in~Gs~~ 178 (224)
...++++++.+|+.+
T Consensus 234 ~~~~~~~~~~~~~~~~v~q~g~~g 257 (285)
T cd07405 234 YVPGTPCKPDVQNGVWIVQAHEWG 257 (285)
T ss_pred cccCccccCcccCCEEEEeCChHH
Confidence 234778888888777
No 80
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=99.09 E-value=1.5e-08 Score=81.63 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=39.5
Q ss_pred CCeEEEeeccCCCCCCCC------HHHHHHHhhh--cCCcEEEECCCCCCceE---EEcCEEEEcCCCCCC
Q psy10859 120 GQFRIGLCHGHDIIPWGD------PEALALLQRQ--LDVDILISGHTHKFEAY---EHENKFYINPGSATG 179 (224)
Q Consensus 120 ~~~~i~~~H~~~~~~~~~------~~~l~~~~~~--~~~~~vi~GH~H~~~~~---~~~~~~~in~Gs~~~ 179 (224)
.+..|+++|......... .....+++++ .++|+++.||+|..... ..++++++.+|+.+.
T Consensus 192 ~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g~~g~ 262 (288)
T cd07412 192 VDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNCTVPAGNPRLVTQAGSYGK 262 (288)
T ss_pred CCEEEEEeCCCCCCCCCCccccccChhHHHHHhhcCCCCCEEEeCccCccccccccCcCCEEEEecChhhc
Confidence 456788999654321110 0112223333 47999999999998765 568999999999883
No 81
>PHA02239 putative protein phosphatase
Probab=99.07 E-value=1.8e-10 Score=89.78 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=45.1
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc-CC-CccEEEEcCCCCC-----hHHHHHHHhc---CCcEEEecCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV-PG-RIQHILCTGNLVT-----KETFDYLKTL---ASDVHVVRGDFDEG 66 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~-~~-~~D~vi~~GDl~~-----~~~~~~l~~l---~~~v~~v~GNHD~~ 66 (224)
||+++|||+|++.. .+. .+.+.+. .. ..|.|+++||++| .++++.+.++ ..++++++||||.+
T Consensus 1 m~~~~IsDIHG~~~--~l~-~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQ--KLL-TIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHH--HHH-HHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 99999999998542 332 2333332 22 3699999999999 4666665443 35899999999986
No 82
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.04 E-value=2.4e-10 Score=90.23 Aligned_cols=63 Identities=30% Similarity=0.433 Sum_probs=49.3
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc-CCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV-PGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~ 66 (224)
|++++|||||++.. ++.+.+.+ ++ ..+.|.++++||+++ .++++.+++++..+++|.||||..
T Consensus 1 m~~YvIGDIHGc~d--aL~~LL~~-i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD~~ 69 (279)
T TIGR00668 1 MATYLIGDLHGCYD--ELQALLER-VEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHDLH 69 (279)
T ss_pred CcEEEEEcccCCHH--HHHHHHHH-hCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhHHH
Confidence 89999999999663 33333333 33 346899999999999 588899988876788999999964
No 83
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.04 E-value=3.7e-08 Score=82.25 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=64.1
Q ss_pred CHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC--------C-----------CH---HHHHHHhhhc-CCc
Q psy10859 95 DPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW--------G-----------DP---EALALLQRQL-DVD 151 (224)
Q Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~--------~-----------~~---~~l~~~~~~~-~~~ 151 (224)
..++++||+.+|... ...+..++++|++|.... . +. ..+..+++.+ ++.
T Consensus 330 d~eQLaWLe~~La~a--------~a~~p~VVV~hHpPi~t~gi~~md~w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVl 401 (492)
T TIGR03768 330 DAKRWDWLKAELARG--------QADGQLMIIAAHIPIAVSPIGSEMEWWLGAADANPDLQNAVSLTGLVTTLQKYPNLL 401 (492)
T ss_pred CHHHHHHHHHHHHhC--------cCCCceEEEEeCCCcccCCccchhhhccccccccccccccccHHHHHHHHhcCCCeE
Confidence 466777887766321 113345666665765421 1 01 2555666554 788
Q ss_pred EEEECCCCCCceEEE---------cCEEEEcCCCCCCCCCCCCCCCCCeEEEEEE---eCCeEEEEEEEeec
Q psy10859 152 ILISGHTHKFEAYEH---------ENKFYINPGSATGAFNPLEPKVNPSFVLMDI---QSSNVVTYVYQLIA 211 (224)
Q Consensus 152 ~vi~GH~H~~~~~~~---------~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~ 211 (224)
.++|||.|++..... .+.+-|++.|..- -++.|.++|| +++.+++....++.
T Consensus 402 a~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaSl~D--------fPQq~R~~Ei~~n~d~tvsi~tt~vd~ 465 (492)
T TIGR03768 402 MWIAGHRHLNTVKAFPSPDPARPEYGFWQVETASLRD--------FPQQFRTFEIYLNSDDTVSIEAVNVDV 465 (492)
T ss_pred EEEcCCcccccccccCCCCCCCCcCceEEEeehhhcc--------chhhceEEEEEeCCCCeEEEEEEecch
Confidence 999999998765422 3667788877763 2567777777 57888888887754
No 84
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=98.99 E-value=2e-08 Score=78.93 Aligned_cols=172 Identities=16% Similarity=0.284 Sum_probs=101.4
Q ss_pred eEEEEeeccCCCCCCCC--hHHHHHhhcC-----------CCccEEEEcCCCCC-----hH---------------HH--
Q psy10859 2 LVLVLGDLHIPHRTSGL--PAKFKKLLVP-----------GRIQHILCTGNLVT-----KE---------------TF-- 46 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~--~~~l~~~~~~-----------~~~D~vi~~GDl~~-----~~---------------~~-- 46 (224)
+++++||+|.+...... .+.|.+++.- .++..||++||.++ ++ ..
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEA 80 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHH
Confidence 48999999986542111 1355666541 23457999999998 11 11
Q ss_pred -----HHHHhc--CCcEEEecCCCCCCC-----------CC------------CcceEEEeCCEEEEeeecCccc---CC
Q psy10859 47 -----DYLKTL--ASDVHVVRGDFDEGT-----------SY------------PEKKVVTVGQFRIGLCHGHDII---PW 93 (224)
Q Consensus 47 -----~~l~~l--~~~v~~v~GNHD~~~-----------~~------------~~~~~~~~~~~~~~~~~g~~~~---~~ 93 (224)
.+|.++ ..||.++|||||... .+ ...+.++++|.++.+.+|+.+. .+
T Consensus 81 ~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky 160 (257)
T cd07387 81 VKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKY 160 (257)
T ss_pred HHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHh
Confidence 233333 479999999999774 11 1235688999999999986431 11
Q ss_pred CC-HHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCC-------CCCHHHHHHHhhhcCCcEEEECCCCCCceEE
Q psy10859 94 GD-PEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP-------WGDPEALALLQRQLDVDILISGHTHKFEAYE 165 (224)
Q Consensus 94 ~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~-------~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~ 165 (224)
.. .+.+..++.-|. --|-.|..| ..+.+-+ .-+.-++++++||.|......
T Consensus 161 ~~~~~~l~~me~~L~------------------wrHlaPTaPDTL~~yP~~~~Dpf---vi~~~PhVyf~Gnq~~f~t~~ 219 (257)
T cd07387 161 SSLESRLDILERTLK------------------WRHIAPTAPDTLWCYPFTDRDPF---ILEECPHVYFAGNQPKFGTKL 219 (257)
T ss_pred CCCCCHHHHHHHHHH------------------hcccCCCCCCccccccCCCCCce---eecCCCCEEEeCCCcceeeeE
Confidence 11 112233332221 122223221 1111111 113458999999999987665
Q ss_pred Ec-----CEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEE
Q psy10859 166 HE-----NKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVV 203 (224)
Q Consensus 166 ~~-----~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (224)
.. .+..++..++.. .+...+++++.-+..
T Consensus 220 ~~~~~~~~v~lv~vP~Fs~---------t~~~vlvdl~tLe~~ 253 (257)
T cd07387 220 VEGEEGQRVLLVCVPSFSK---------TGTAVLVNLRTLECE 253 (257)
T ss_pred EEcCCCCeEEEEEeCCcCc---------CCEEEEEECCcCcEE
Confidence 43 378888888873 578888888865543
No 85
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=98.98 E-value=5.3e-10 Score=88.06 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=47.4
Q ss_pred EEEEeeccCCCCCCCChHHHHHhhc-CCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCCC
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLLV-PGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
+++|||+|++.. .+.+.+.+ +. ..+.|.++++||+++ .++++.+.+++.++++|.||||...
T Consensus 1 ~yvIGDIHG~~~--~L~~LL~~-i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~~l 68 (257)
T cd07422 1 TYAIGDIQGCYD--ELQRLLEK-INFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDLHL 68 (257)
T ss_pred CEEEECCCCCHH--HHHHHHHh-cCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchHHH
Confidence 478999999653 33333333 33 346899999999999 6888899888778999999999863
No 86
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.97 E-value=4.8e-09 Score=99.01 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=95.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEE-cCCCCC----------hHHHHHHHhcCCcEEEecCCCCCCC--
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILC-TGNLVT----------KETFDYLKTLASDVHVVRGDFDEGT-- 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~-~GDl~~----------~~~~~~l~~l~~~v~~v~GNHD~~~-- 67 (224)
++|++++|+|+..........+.+.++++++|.|++ +||++. ...++.++.++.. +.++||||+..
T Consensus 661 l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg~d-~~~~GNHEfd~g~ 739 (1163)
T PRK09419 661 LTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMGYD-ASTFGNHEFDWGP 739 (1163)
T ss_pred EEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcCCC-EEEecccccccCh
Confidence 479999999974321111122333334567888876 999998 3566777777543 56999999753
Q ss_pred ----------C------------CC-------------------cceEEEeCCEEEEeeecC--cccCCCCHH-------
Q psy10859 68 ----------S------------YP-------------------EKKVVTVGQFRIGLCHGH--DIIPWGDPE------- 97 (224)
Q Consensus 68 ----------~------------~~-------------------~~~~~~~~~~~~~~~~g~--~~~~~~~~~------- 97 (224)
. +| ...+++.+|.++.++.=. ....+..+.
T Consensus 740 ~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f 819 (1163)
T PRK09419 740 DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEF 819 (1163)
T ss_pred HHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCCcCCcEE
Confidence 1 21 112346677776643210 000011010
Q ss_pred --HHHHHHHhhcCCCCCCcee-eeeCCeEEEeeccCCCCCC-CCHHHHHHHhhh-cCCcEEEECCCCCCceEEEcCEEEE
Q psy10859 98 --ALALLQRQLDGTSYPEKKV-VTVGQFRIGLCHGHDIIPW-GDPEALALLQRQ-LDVDILISGHTHKFEAYEHENKFYI 172 (224)
Q Consensus 98 --~~~~l~~~l~~~~~~~~~~-~~~~~~~i~~~H~~~~~~~-~~~~~l~~~~~~-~~~~~vi~GH~H~~~~~~~~~~~~i 172 (224)
-.+.+++.. .++. ..-.+..|+++|....... .+.....+++++ .++|+++.||+|......++++.++
T Consensus 820 ~d~~e~~~~~v------~~Lr~~~~~D~VV~LsH~G~~~d~~~~~~~~~~lA~~v~gIDvIigGHsH~~~~~~v~~~~iv 893 (1163)
T PRK09419 820 KDPAEAAKKWV------KELKEKEKVDAIIALTHLGSNQDRTTGEITGLELAKKVKGVDAIISAHTHTLVDKVVNGTPVV 893 (1163)
T ss_pred cCHHHHHHHHH------HHHHhhcCCCEEEEEecCCccccccccccHHHHHHHhCCCCCEEEeCCCCccccccCCCEEEE
Confidence 001111100 0001 1234567889996542211 111112334443 4799999999999877667899999
Q ss_pred cCCCCCC
Q psy10859 173 NPGSATG 179 (224)
Q Consensus 173 n~Gs~~~ 179 (224)
.+|+.+.
T Consensus 894 qag~~g~ 900 (1163)
T PRK09419 894 QAYKYGR 900 (1163)
T ss_pred eCChhHc
Confidence 9998883
No 87
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.94 E-value=1e-07 Score=76.48 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=37.2
Q ss_pred CCeEEEeeccCCCCCCCCHHHHHHHhhhc-CCc-EEEECCCCCCceEE-EcCEEEEcCCCCCC
Q psy10859 120 GQFRIGLCHGHDIIPWGDPEALALLQRQL-DVD-ILISGHTHKFEAYE-HENKFYINPGSATG 179 (224)
Q Consensus 120 ~~~~i~~~H~~~~~~~~~~~~l~~~~~~~-~~~-~vi~GH~H~~~~~~-~~~~~~in~Gs~~~ 179 (224)
.+..|+++|..........+....+.+.. +.+ +++.||+|+..... .++++++.||+.+.
T Consensus 188 ~DvIIvlsH~G~~~d~~~~~~~~~la~~~~~id~~Ii~GHsH~~~~~~~~~~~~ivq~G~~g~ 250 (282)
T cd07407 188 VDLILVLGHMPVRDDAEFKVLHDAIRKIFPDTPIQFLGGHSHVRDFTQYDSSSTGLESGRYLE 250 (282)
T ss_pred CCEEEEEeCCCCCCCccHHHHHHHHHHhCCCCCEEEEeCCcccccceeccCcEEEEeccchhh
Confidence 45678899965432211111122333333 566 79999999764443 37899999999884
No 88
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.93 E-value=2.2e-07 Score=74.75 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=41.9
Q ss_pred CeEEEEeeccCCCCCC----------------CCh--HHHHHhhcCCCccE-EEEcCCCCC----------hHHHHHHHh
Q psy10859 1 MLVLVLGDLHIPHRTS----------------GLP--AKFKKLLVPGRIQH-ILCTGNLVT----------KETFDYLKT 51 (224)
Q Consensus 1 mki~~isDiH~~~~~~----------------~~~--~~l~~~~~~~~~D~-vi~~GDl~~----------~~~~~~l~~ 51 (224)
++|++++|+|+..... .+. ..+.+.+++++++. ++.+||.+. ...++.++.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~ 80 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNL 80 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHh
Confidence 4799999999742110 111 12222233446664 555999997 456778888
Q ss_pred cCCcEEEecCCCCCCC
Q psy10859 52 LASDVHVVRGDFDEGT 67 (224)
Q Consensus 52 l~~~v~~v~GNHD~~~ 67 (224)
++..+. +.||||+..
T Consensus 81 ~g~D~~-~lGNHefd~ 95 (281)
T cd07409 81 LGYDAM-TLGNHEFDD 95 (281)
T ss_pred cCCCEE-EeccccccC
Confidence 876654 569999875
No 89
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.92 E-value=5.6e-09 Score=80.06 Aligned_cols=66 Identities=26% Similarity=0.520 Sum_probs=45.1
Q ss_pred eEEEEeeccCCCCC------CCCh--------HHHHHhhcCCCccEEEEcCCCCC----------hHHHHHHHhcCC-cE
Q psy10859 2 LVLVLGDLHIPHRT------SGLP--------AKFKKLLVPGRIQHILCTGNLVT----------KETFDYLKTLAS-DV 56 (224)
Q Consensus 2 ki~~isDiH~~~~~------~~~~--------~~l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l~~-~v 56 (224)
+.+++||+|++... ..++ ..+.++++..+|+.+|++||+.. .++..+++.+.. .+
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~ev 100 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDEREV 100 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccCcE
Confidence 57899999986531 1222 23455667889999999999997 122233333322 59
Q ss_pred EEecCCCCCCC
Q psy10859 57 HVVRGDFDEGT 67 (224)
Q Consensus 57 ~~v~GNHD~~~ 67 (224)
++|.||||...
T Consensus 101 i~i~GNHD~~i 111 (235)
T COG1407 101 IIIRGNHDNGI 111 (235)
T ss_pred EEEeccCCCcc
Confidence 99999999864
No 90
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.90 E-value=6.7e-09 Score=77.91 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=22.4
Q ss_pred EEeeccCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCceEE
Q psy10859 124 IGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYE 165 (224)
Q Consensus 124 i~~~H~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~ 165 (224)
|+++|.+... .....+++++++||+|......
T Consensus 129 ilL~H~P~~~----------~~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYK----------IFLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEccccee----------ccccCCCCEEEeCccCCCeEEE
Confidence 8999943211 1124578999999999877654
No 91
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=98.87 E-value=2e-07 Score=74.28 Aligned_cols=63 Identities=27% Similarity=0.314 Sum_probs=44.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhc----CCcEEEecCCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTL----ASDVHVVRGDFDEG 66 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~v~~v~GNHD~~ 66 (224)
++++++||+|++.. ++...+ +.......+.++++||++| .+++..+..+ ...++.++||||..
T Consensus 28 ~~i~vvGDiHG~~~--~l~~ll-~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFD--DLLRLF-DLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHH--HHHHHH-HHcCCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 57899999998543 222222 2223456789999999999 5677766654 24799999999985
No 92
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.82 E-value=4.6e-08 Score=85.78 Aligned_cols=186 Identities=15% Similarity=0.222 Sum_probs=98.2
Q ss_pred CeEEEEeeccCCCCCC-----CCh--HHHHHhhcC-----CCccEEEEcCCCCC----------hHHHHHHHhcCCcEEE
Q psy10859 1 MLVLVLGDLHIPHRTS-----GLP--AKFKKLLVP-----GRIQHILCTGNLVT----------KETFDYLKTLASDVHV 58 (224)
Q Consensus 1 mki~~isDiH~~~~~~-----~~~--~~l~~~~~~-----~~~D~vi~~GDl~~----------~~~~~~l~~l~~~v~~ 58 (224)
+.|++++|+|+..... .+. ..+.+.+++ ...-+++.+||.+. ...++.++.++..+ .
T Consensus 35 ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~Da-~ 113 (551)
T PRK09558 35 ITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDA-M 113 (551)
T ss_pred EEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCCCE-E
Confidence 3689999999854211 111 122222221 22357889999996 45677888887665 5
Q ss_pred ecCCCCCCC------------CCC-----------------cceEEEeCCEEEEeeec--CcccCCCCHH---------H
Q psy10859 59 VRGDFDEGT------------SYP-----------------EKKVVTVGQFRIGLCHG--HDIIPWGDPE---------A 98 (224)
Q Consensus 59 v~GNHD~~~------------~~~-----------------~~~~~~~~~~~~~~~~g--~~~~~~~~~~---------~ 98 (224)
++||||+.. .+| ...+++.+|.++.++.= .....+..+. .
T Consensus 114 tlGNHEFD~G~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~~~~~~f~d~ 193 (551)
T PRK09558 114 AVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEYFTDIEFRDP 193 (551)
T ss_pred cccccccCcCHHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCCcCCceECCH
Confidence 569999875 111 12345678888765421 0000111111 0
Q ss_pred HHHHHHhhcCCCCCCceee-eeCCeEEEeeccCCCCCCCC----HHHHHHHhhhc---CCcEEEECCCCCCce-------
Q psy10859 99 LALLQRQLDGTSYPEKKVV-TVGQFRIGLCHGHDIIPWGD----PEALALLQRQL---DVDILISGHTHKFEA------- 163 (224)
Q Consensus 99 ~~~l~~~l~~~~~~~~~~~-~~~~~~i~~~H~~~~~~~~~----~~~l~~~~~~~---~~~~vi~GH~H~~~~------- 163 (224)
.+..++.. .++.. .-.+..|+++|......... +.. ..++++. ++|+++.||+|....
T Consensus 194 ~e~a~~~v------~~Lk~~~~~D~IV~LsH~G~~~~~~~~~~~~~d-~~la~~~~~~~IDvIlgGHsH~~~~~~~~~~~ 266 (551)
T PRK09558 194 AEEAKKVI------PELKQTEKPDVIIALTHMGHYDDGEHGSNAPGD-VEMARSLPAGGLDMIVGGHSQDPVCMAAENKK 266 (551)
T ss_pred HHHHHHHH------HHHHhccCCCEEEEEeccccccCCccCCCCccH-HHHHHhCCccCceEEEeCCCCcccccCCCccc
Confidence 01111100 00111 23456788999654221110 111 2334433 799999999997643
Q ss_pred ------------EEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEE
Q psy10859 164 ------------YEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVV 203 (224)
Q Consensus 164 ------------~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (224)
...++++++.+|+.+. .-+-.-++++++++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~ivqag~~g~---------~vg~l~l~~~~g~~~ 309 (551)
T PRK09558 267 QVDYVPGTPCKPDQQNGTWIVQAHEWGK---------YVGRADFEFRNGELK 309 (551)
T ss_pred ccccCCCCCCCCcccCCEEEEecChhhh---------eeEEEEEEEECCeEE
Confidence 2346788888887773 224444566666553
No 93
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.80 E-value=4.5e-07 Score=71.44 Aligned_cols=165 Identities=20% Similarity=0.228 Sum_probs=96.7
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC------hHHHHHHHhcCCcEEEecCCCCCCC--------
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT------KETFDYLKTLASDVHVVRGDFDEGT-------- 67 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~v~~v~GNHD~~~-------- 67 (224)
||++|+|+=+......+.+.+.++.++.++|++|..||-.. .+.++.|++++..+..+ |||++..
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~iTl-GNH~fD~gel~~~l~ 79 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGVDVITM-GNHTWDKKEILDFID 79 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCCCEEEe-cccccCcchHHHHHh
Confidence 68999999974432223334455545668999999999985 78899999998787655 9999764
Q ss_pred ---------CCCc------ceEEEeCCEEEEeee--cCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccC
Q psy10859 68 ---------SYPE------KKVVTVGQFRIGLCH--GHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGH 130 (224)
Q Consensus 68 ---------~~~~------~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~ 130 (224)
+++. ...++.+|.++.++. |....+...... +.+++.+. ++. ...+..|+.+|..
T Consensus 80 ~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~-~~~~~~v~--~lk-----~~~D~IIV~~H~g 151 (255)
T cd07382 80 EEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPF-RAADELLE--ELK-----EEADIIFVDFHAE 151 (255)
T ss_pred cCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHH-HHHHHHHH--HHh-----cCCCEEEEEECCC
Confidence 2221 234567788877543 322211111111 11221110 111 1245678899964
Q ss_pred CCCCCCCHHHHHHHhhh--cCCcEEEECCCCCCceE--EE-cCEEEEcCCCCCCCC
Q psy10859 131 DIIPWGDPEALALLQRQ--LDVDILISGHTHKFEAY--EH-ENKFYINPGSATGAF 181 (224)
Q Consensus 131 ~~~~~~~~~~l~~~~~~--~~~~~vi~GH~H~~~~~--~~-~~~~~in~Gs~~~~~ 181 (224)
. ..+.. .+... -++|+++.||+|.+... .. +++.|+..-..+++|
T Consensus 152 ~-----tsEk~-ala~~ldg~VdvIvGtHTHv~t~d~~il~~gTa~itd~Gm~G~~ 201 (255)
T cd07382 152 A-----TSEKI-ALGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTGPY 201 (255)
T ss_pred C-----CHHHH-HHHHhCCCCceEEEeCCCCccCCccEEeeCCeEEEecCccccCC
Confidence 2 22222 12222 25999999999998643 34 788666444444443
No 94
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=98.79 E-value=7.2e-09 Score=80.37 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=44.2
Q ss_pred EEEeeccCCCCCCCChHHHHHhhcC--------CCccEEEEcCCCCC-----hHHHHHHHhcC--CcEEEecCCCCCCC
Q psy10859 4 LVLGDLHIPHRTSGLPAKFKKLLVP--------GRIQHILCTGNLVT-----KETFDYLKTLA--SDVHVVRGDFDEGT 67 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l~~~~~~--------~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~v~~v~GNHD~~~ 67 (224)
.+|||||++.. .+.+.+.+ +.. ...|.++++||++| .++++.+.++. .+++++.||||.+.
T Consensus 2 ~vIGDIHG~~~--~L~~lL~~-i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~l 77 (222)
T cd07413 2 DFIGDIHGHAE--KLVVLLHK-LGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFNA 77 (222)
T ss_pred EEEEeccCCHH--HHHHHHHH-cCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHHH
Confidence 68999999653 33333333 321 14689999999999 68888888763 36999999999864
No 95
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.79 E-value=1.9e-07 Score=88.45 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=38.9
Q ss_pred CCeEEEeeccCCCCCC---CCHHHHHHHhhh-cCCcEEEECCCCCCce--------------EEEcCEEEEcCCCCC
Q psy10859 120 GQFRIGLCHGHDIIPW---GDPEALALLQRQ-LDVDILISGHTHKFEA--------------YEHENKFYINPGSAT 178 (224)
Q Consensus 120 ~~~~i~~~H~~~~~~~---~~~~~l~~~~~~-~~~~~vi~GH~H~~~~--------------~~~~~~~~in~Gs~~ 178 (224)
.+..|+++|....... ........++++ .++|+++.||+|.... ..++++.++.+|+.+
T Consensus 235 aDvII~l~H~G~~~~~~~~~~en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g 311 (1163)
T PRK09419 235 ADVIVALAHSGIESEYQSSGAEDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWG 311 (1163)
T ss_pred CCEEEEEeccCcCCCCCCCCcchHHHHHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhh
Confidence 4567889996542211 112223344533 5899999999998754 345788999999888
No 96
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.76 E-value=5.8e-07 Score=71.07 Aligned_cols=166 Identities=13% Similarity=0.143 Sum_probs=98.2
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC------hHHHHHHHhcCCcEEEecCCCCCCC-------
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT------KETFDYLKTLASDVHVVRGDFDEGT------- 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~v~~v~GNHD~~~------- 67 (224)
|||++++|+=+......+.+.+.++.++.++|++|..||-.. .+.++.|.+.+..++.+ |||.+..
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~-GNH~~Dkge~~~~i 79 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITM-GNHTWFQKLILDVV 79 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEc-cchhccCcHHHHHH
Confidence 999999999974322223344555545678999999999996 78999999999888777 9999763
Q ss_pred ----------CCCc------ceEEEeCCEEEEeee--cCcccCC-CCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeec
Q psy10859 68 ----------SYPE------KKVVTVGQFRIGLCH--GHDIIPW-GDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCH 128 (224)
Q Consensus 68 ----------~~~~------~~~~~~~~~~~~~~~--g~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H 128 (224)
+||. ...++.+|.++.++. |..+.+. ....-.....+.+. ++ ....+..|+..|
T Consensus 80 ~~~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~--~l-----k~~~d~IIVd~H 152 (266)
T TIGR00282 80 INQKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELIN--ML-----KKDCDLIFVDFH 152 (266)
T ss_pred hccccccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHH--hh-----hcCCCEEEEEeC
Confidence 2331 234566777776543 3222211 00101111111110 11 111356788999
Q ss_pred cCCCCCCCCHHHHHHHhhhcCCcEEEECCCCCCceE-EE--cCEEEE-cCCCCC
Q psy10859 129 GHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAY-EH--ENKFYI-NPGSAT 178 (224)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~-~~--~~~~~i-n~Gs~~ 178 (224)
+.- ........+.-.-++++|+.-|+|.+... ++ +|+-|+ ..|-++
T Consensus 153 aea----tsEK~a~~~~ldg~vsaVvGtHtHV~TaD~~il~~gtayitD~Gm~G 202 (266)
T TIGR00282 153 AET----TSEKNAFGMAFDGYVTAVVGTHTHVPTADLRILPKGTAYITDVGMTG 202 (266)
T ss_pred CCC----HHHHHHHHHHhCCCccEEEeCCCCCCCCcceeCCCCCEEEecCCccc
Confidence 532 11222233344568999999999998643 32 566565 555444
No 97
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.73 E-value=2.1e-07 Score=83.96 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=41.8
Q ss_pred CeEEEEeeccCCCCCC-----------CCh--HHHHHhhcCCC-ccEEEEcCCCCC-----h--------------HHHH
Q psy10859 1 MLVLVLGDLHIPHRTS-----------GLP--AKFKKLLVPGR-IQHILCTGNLVT-----K--------------ETFD 47 (224)
Q Consensus 1 mki~~isDiH~~~~~~-----------~~~--~~l~~~~~~~~-~D~vi~~GDl~~-----~--------------~~~~ 47 (224)
++|++++|+|+..... .+. ..+.+.++++. --+++.+||++. . .+++
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i~ 195 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMYA 195 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHHH
Confidence 4799999999853210 011 12222233333 357899999997 0 2577
Q ss_pred HHHhcCCcEEEecCCCCCCC
Q psy10859 48 YLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 48 ~l~~l~~~v~~v~GNHD~~~ 67 (224)
.|+.++.. ....||||+..
T Consensus 196 amN~LGyD-A~tLGNHEFDy 214 (814)
T PRK11907 196 ALEALGFD-AGTLGNHEFNY 214 (814)
T ss_pred HHhccCCC-EEEechhhccc
Confidence 78887644 58899999885
No 98
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.69 E-value=2.3e-07 Score=83.54 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=40.2
Q ss_pred CCeEEEeeccCCCCCC--CCHHHH-HHHhhhcCCcEEEECCCCCCceEEEcCEEEEcCCCCCC
Q psy10859 120 GQFRIGLCHGHDIIPW--GDPEAL-ALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATG 179 (224)
Q Consensus 120 ~~~~i~~~H~~~~~~~--~~~~~l-~~~~~~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~ 179 (224)
.+..|+++|....... .+.+.. ..+.+-.++|+++.||+|.......++++++.+|+.+.
T Consensus 245 aDvIIaLsH~G~~~d~~~~~~ena~~~l~~v~gID~IlgGHsH~~~~~~ingv~vvqaG~~G~ 307 (780)
T PRK09418 245 ADVIVALAHSGVDKSGYNVGMENASYYLTEVPGVDAVLMGHSHTEVKDVFNGVPVVMPGVFGS 307 (780)
T ss_pred CCEEEEEeccCcccccccccchhhhHHHhcCCCCCEEEECCCCCcccccCCCEEEEEcChhhc
Confidence 4567889996542210 011111 11223358999999999998877788999999999983
No 99
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.67 E-value=7.1e-07 Score=77.82 Aligned_cols=170 Identities=21% Similarity=0.277 Sum_probs=93.4
Q ss_pred CeEEEEeeccCCCCC-------C---CCh--HHHHHhhc-CCCccEEEEcCCCCC-----------hHHHHHHHhcCCcE
Q psy10859 1 MLVLVLGDLHIPHRT-------S---GLP--AKFKKLLV-PGRIQHILCTGNLVT-----------KETFDYLKTLASDV 56 (224)
Q Consensus 1 mki~~isDiH~~~~~-------~---~~~--~~l~~~~~-~~~~D~vi~~GDl~~-----------~~~~~~l~~l~~~v 56 (224)
++|++++|+|+.... . .+. ..+.+.++ +....+++.+||+++ ...++.|+.++. =
T Consensus 27 l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~y-D 105 (517)
T COG0737 27 LTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGY-D 105 (517)
T ss_pred EEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcCC-c
Confidence 479999999984430 0 111 22333333 344578999999998 467788888864 4
Q ss_pred EEecCCCCCCC------------CCC------------------cceEEEeCCEEEEeeecC--cccCCCCHH-------
Q psy10859 57 HVVRGDFDEGT------------SYP------------------EKKVVTVGQFRIGLCHGH--DIIPWGDPE------- 97 (224)
Q Consensus 57 ~~v~GNHD~~~------------~~~------------------~~~~~~~~~~~~~~~~g~--~~~~~~~~~------- 97 (224)
+...||||+.. .+| ...+++.++.++.++.-. ....|....
T Consensus 106 a~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f 185 (517)
T COG0737 106 AMTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTF 185 (517)
T ss_pred EEeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEE
Confidence 57889999885 111 123567788887653211 001111111
Q ss_pred --HHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCC----CHHHHHHHhhhcCCcEEEECCCCCCceE-----EE
Q psy10859 98 --ALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWG----DPEALALLQRQLDVDILISGHTHKFEAY-----EH 166 (224)
Q Consensus 98 --~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~----~~~~l~~~~~~~~~~~vi~GH~H~~~~~-----~~ 166 (224)
..+.+++.+ .+...+--+..|+++|........ .+.... ... .++|+++.||+|+.... ..
T Consensus 186 ~d~~e~~~~~i------~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~~~~-~~~-~~iD~i~~GH~H~~~~~~~~~~~~ 257 (517)
T COG0737 186 RDPIEAAKKYI------PELKGEGVDVIIALSHLGIEDDLELASEVPGDVD-VAV-PGIDLIIGGHSHTVFPGGDKPGTV 257 (517)
T ss_pred cCHHHHHHHHH------HHHHhcCCCEEEEEeccCcCcccccccccccccc-ccc-cCcceEeccCCcccccCCcccCcc
Confidence 111111111 000011146678999965422110 010110 111 34999999999964322 35
Q ss_pred cCEEEEcCCCCCC
Q psy10859 167 ENKFYINPGSATG 179 (224)
Q Consensus 167 ~~~~~in~Gs~~~ 179 (224)
++++++.+|+.+.
T Consensus 258 ~~t~ivqag~~gk 270 (517)
T COG0737 258 NGTPIVQAGEYGK 270 (517)
T ss_pred CCEEEEccChhhC
Confidence 7899999999993
No 100
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.64 E-value=2e-07 Score=82.66 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=36.9
Q ss_pred CCeEEEeeccCCCCC--CCCHHHH-HHHhhhcCCcEEEECCCCCCceE--------------EEcCEEEEcCCCCC
Q psy10859 120 GQFRIGLCHGHDIIP--WGDPEAL-ALLQRQLDVDILISGHTHKFEAY--------------EHENKFYINPGSAT 178 (224)
Q Consensus 120 ~~~~i~~~H~~~~~~--~~~~~~l-~~~~~~~~~~~vi~GH~H~~~~~--------------~~~~~~~in~Gs~~ 178 (224)
.+..|+++|...... ....+.. ..+.+-.++|+++.||+|..... ..++++++.+|+.+
T Consensus 196 aDvII~LsH~G~~~d~~~~~~en~~~~l~~v~gID~Il~GHsH~~~~~~~~~~~~~~d~~~~~i~g~~vvqaG~~G 271 (626)
T TIGR01390 196 ADIIVALAHSGISADPYQPGAENSAYYLTKVPGIDAVLFGHSHAVFPGKDFATIPGADITNGTINGVPAVMAGYWG 271 (626)
T ss_pred CCEEEEEeccCcCCCccccccchHHHHHhcCCCCCEEEcCCCCccCcCcccccCCcccccccccCCEEEEeCChhh
Confidence 456788999654221 1111111 12223358999999999996532 34678889998888
No 101
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.62 E-value=2e-07 Score=67.57 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=37.8
Q ss_pred EEEeeccCCCCCCCChHHHHHhhc-CCCccEEEEcCCCCCh-----HHHHHHHh---cCCcEEEecCCCC
Q psy10859 4 LVLGDLHIPHRTSGLPAKFKKLLV-PGRIQHILCTGNLVTK-----ETFDYLKT---LASDVHVVRGDFD 64 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~~-----~~~~~l~~---l~~~v~~v~GNHD 64 (224)
++++|.|+... .+.+.+..+.+ ....|++|++||++.. +..+++.. ...|+|++-|||+
T Consensus 1 LV~G~~~G~l~--~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLK--ALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHH--HHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC
Confidence 47899998332 22233333222 4569999999999981 23333332 2469999999996
No 102
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=98.61 E-value=3.6e-06 Score=68.22 Aligned_cols=62 Identities=26% Similarity=0.288 Sum_probs=43.8
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEG 66 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~ 66 (224)
+++++||+|++.. ++.+.| +.......+.++++||++| .+++..+..++ ..++.++||||..
T Consensus 44 ~i~ViGDIHG~~~--dL~~l~-~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFY--DLLKLF-EVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHH--HHHHHH-HhcCCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 5789999998553 222222 2223345699999999999 57777766552 3689999999975
No 103
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=98.60 E-value=3e-06 Score=68.93 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=42.0
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcC----CCccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVP----GRIQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEG 66 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~----~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~ 66 (224)
++.+++|+|++.. .+.++++. ..-|.++++||++| .+++..+..++ ..++.++||||..
T Consensus 61 ~~~VvGDIHG~~~------dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 61 KITVCGDTHGQFY------DLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred eeEEeecccCCHH------HHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchH
Confidence 5889999998553 23333332 13468999999999 57777666542 3689999999974
No 104
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=98.60 E-value=1.1e-06 Score=70.78 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=43.5
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEGT 67 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~~ 67 (224)
+++++||+|++.. ++...+ +.......+.++++||++| .+++..+..++ ..++.++||||...
T Consensus 51 ~i~viGDIHG~~~--~L~~l~-~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~ 122 (293)
T cd07414 51 PLKICGDIHGQYY--DLLRLF-EYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS 122 (293)
T ss_pred ceEEEEecCCCHH--HHHHHH-HhcCCCCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhh
Confidence 4789999998543 222222 2223345678999999999 56766666542 36999999999863
No 105
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=98.59 E-value=3.9e-06 Score=68.12 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=43.0
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEG 66 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~ 66 (224)
+++++||+|++.. ++.+.+ +.......+.++++||++| .+++..+..++ ..++.++||||..
T Consensus 60 ~i~vvGDIHG~~~--dL~~l~-~~~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYF--DLLRLF-EYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHH--HHHHHH-HhcCCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchh
Confidence 4789999998542 222222 2223345678999999999 57777766542 3689999999975
No 106
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.56 E-value=5.4e-06 Score=67.57 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=41.4
Q ss_pred CeEEEEeeccCCCCC-CCCh--HHHHHhhcC-----CCccEEEEcCCCCC------------------hHHHHHHHhcCC
Q psy10859 1 MLVLVLGDLHIPHRT-SGLP--AKFKKLLVP-----GRIQHILCTGNLVT------------------KETFDYLKTLAS 54 (224)
Q Consensus 1 mki~~isDiH~~~~~-~~~~--~~l~~~~~~-----~~~D~vi~~GDl~~------------------~~~~~~l~~l~~ 54 (224)
++|++++|+|+.... ..+. ..+.+.+++ ..-.+++.+||++. ...++.++.++.
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~ 80 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGV 80 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCC
Confidence 479999999985421 1111 112222222 23458899999985 244677777765
Q ss_pred cEEEecCCCCCCC
Q psy10859 55 DVHVVRGDFDEGT 67 (224)
Q Consensus 55 ~v~~v~GNHD~~~ 67 (224)
. ....||||+..
T Consensus 81 D-a~tlGNHEFD~ 92 (313)
T cd08162 81 Q-AIALGNHEFDL 92 (313)
T ss_pred c-EEecccccccc
Confidence 5 47899999774
No 107
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.55 E-value=5.1e-07 Score=80.29 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=42.1
Q ss_pred CeEEEEeeccCCCCCC-----------CCh--HHHHHhhcCC-CccEEEEcCCCCC-----h-------------HHHHH
Q psy10859 1 MLVLVLGDLHIPHRTS-----------GLP--AKFKKLLVPG-RIQHILCTGNLVT-----K-------------ETFDY 48 (224)
Q Consensus 1 mki~~isDiH~~~~~~-----------~~~--~~l~~~~~~~-~~D~vi~~GDl~~-----~-------------~~~~~ 48 (224)
++|++++|+|+..... .+. ..+.+.++++ .--+++.+||++. . .+++.
T Consensus 26 L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i~a 105 (649)
T PRK09420 26 LRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVYKA 105 (649)
T ss_pred EEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHHHH
Confidence 4799999999853210 011 1223333323 3357889999997 0 25777
Q ss_pred HHhcCCcEEEecCCCCCCC
Q psy10859 49 LKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 49 l~~l~~~v~~v~GNHD~~~ 67 (224)
++.++.. ....||||+..
T Consensus 106 mN~lgyD-a~tlGNHEFd~ 123 (649)
T PRK09420 106 MNTLDYD-VGNLGNHEFNY 123 (649)
T ss_pred HHhcCCc-EEeccchhhhc
Confidence 8887644 58899999875
No 108
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=98.54 E-value=2.6e-06 Score=68.62 Aligned_cols=61 Identities=25% Similarity=0.241 Sum_probs=40.8
Q ss_pred EEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhc----CCcEEEecCCCCCC
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTL----ASDVHVVRGDFDEG 66 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~v~~v~GNHD~~ 66 (224)
+.++||+|++.. ++...+.+ +.....+.++++||++| .+++..+..+ ...++.+.||||..
T Consensus 54 ~~ViGDIHG~~~--~L~~l~~~-~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYY--DLLRIFEK-CGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHH--HHHHHHHH-cCCCCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchH
Confidence 578999998553 22222222 23345668889999999 4666655432 34799999999965
No 109
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.50 E-value=1.3e-05 Score=70.38 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=42.2
Q ss_pred CeEEEEeeccCCCCCCC---------------ChHHHHHh---hc-CCCccEEEEcCCCCC----------hHHHHHHHh
Q psy10859 1 MLVLVLGDLHIPHRTSG---------------LPAKFKKL---LV-PGRIQHILCTGNLVT----------KETFDYLKT 51 (224)
Q Consensus 1 mki~~isDiH~~~~~~~---------------~~~~l~~~---~~-~~~~D~vi~~GDl~~----------~~~~~~l~~ 51 (224)
+.|++++|+|+...... -...+... ++ +...-+++.+||.+. ...++.++.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~ 80 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNA 80 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhc
Confidence 47999999997421100 01122222 23 233457889999997 456778887
Q ss_pred cCCcEEEecCCCCCCC
Q psy10859 52 LASDVHVVRGDFDEGT 67 (224)
Q Consensus 52 l~~~v~~v~GNHD~~~ 67 (224)
++. -..+.||||+..
T Consensus 81 ~g~-Da~~lGNHEFd~ 95 (550)
T TIGR01530 81 AGF-DFFTLGNHEFDA 95 (550)
T ss_pred cCC-CEEEeccccccC
Confidence 764 468999999874
No 110
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=98.50 E-value=1.1e-05 Score=64.67 Aligned_cols=62 Identities=27% Similarity=0.337 Sum_probs=42.5
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhc----CCcEEEecCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTL----ASDVHVVRGDFDEG 66 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~v~~v~GNHD~~ 66 (224)
.+.++||+|++.. ++...+ +.......+.++++||++| .+++..+..+ ...++.++||||..
T Consensus 43 ~i~vvGDIHG~~~--dL~~ll-~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFY--DLLELF-RVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHH--HHHHHH-HHcCCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 4789999998543 222222 2222345678999999999 4666666544 24699999999975
No 111
>KOG3947|consensus
Probab=98.45 E-value=5.4e-07 Score=69.94 Aligned_cols=157 Identities=19% Similarity=0.227 Sum_probs=88.1
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC----hHHHHHHHhcC----CcEEEecCCCCCCCC--CC-
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT----KETFDYLKTLA----SDVHVVRGDFDEGTS--YP- 70 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~----~~v~~v~GNHD~~~~--~~- 70 (224)
|++.|||+|...- .+.+ --.-|+++++||+.. .++++.=..++ +-.++|.|||+..++ |.
T Consensus 63 r~VcisdtH~~~~------~i~~---~p~gDvlihagdfT~~g~~~ev~~fn~~~gslph~yKIVIaGNHELtFd~ef~~ 133 (305)
T KOG3947|consen 63 RFVCISDTHELTF------DIND---IPDGDVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKIVIAGNHELTFDHEFMA 133 (305)
T ss_pred EEEEecCcccccC------cccc---CCCCceEEeccCCccccCHHHHHhhhHHhccCcceeeEEEeeccceeecccccc
Confidence 7899999996221 1111 346899999999998 34443322222 467899999997751 10
Q ss_pred --------------------c----------------ceEEEeCCEEEEeeecCcccCCCC--HHHHHHHHHhhcCCCCC
Q psy10859 71 --------------------E----------------KKVVTVGQFRIGLCHGHDIIPWGD--PEALALLQRQLDGTSYP 112 (224)
Q Consensus 71 --------------------~----------------~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~l~~~l~~~~~~ 112 (224)
+ ...++..|++ ++| .+|.. +.+-.++.+. ..+.
T Consensus 134 ~~~k~~~~~~~~p~~s~l~P~a~egv~~lLTN~iYLqD~~vtv~G~~---Iyg---spw~p~~~g~~f~l~rg---~~~l 204 (305)
T KOG3947|consen 134 DLIKDEQDAYYFPGVSKLKPEAYEGVQSLLTNCIYLQDSEVTVRGVR---IYG---SPWTPLLPGWAFNLPRG---QSLL 204 (305)
T ss_pred hhhccccceecCccccccCccccccccchhceeEEEecCcEEEEEEE---Eec---CCCCcccCchhhhhhhh---Hhhh
Confidence 0 0011222222 344 23431 1122233210 1111
Q ss_pred CceeeeeCCeEEEeeccCCCCC--C--------CC-HHHHHHHhhhcCCcEEEECCCCCCceEEE-cCEEEEcCCC
Q psy10859 113 EKKVVTVGQFRIGLCHGHDIIP--W--------GD-PEALALLQRQLDVDILISGHTHKFEAYEH-ENKFYINPGS 176 (224)
Q Consensus 113 ~~~~~~~~~~~i~~~H~~~~~~--~--------~~-~~~l~~~~~~~~~~~vi~GH~H~~~~~~~-~~~~~in~Gs 176 (224)
.+.....++..++++|.+|..- + .+ .+.+..+.++.++++-++||.|......- +.+.++|+..
T Consensus 205 d~W~~ip~~iDvL~tHtPPlG~gd~~~~~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvta~G~t~fina~~ 280 (305)
T KOG3947|consen 205 DKWNQIPGGIDVLITHTPPLGHGDLVPVFSGQRNGCVELLNTVERRVQPKYHVFGHVHEGHGVTADGYTTFINAEL 280 (305)
T ss_pred HHHhcCccccceeccCCCCCCcchhcccccCcccCHHHHHHhHhhccccceEEeeeeecCceeeecCccccccHHH
Confidence 1222236778899999887531 1 12 33445555667899999999999875544 5567777544
No 112
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=98.44 E-value=1.7e-05 Score=64.58 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=40.7
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCC----C----ccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPG----R----IQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFD 64 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~----~----~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD 64 (224)
.+.++||+|++.. ++.+.+.. +... . ...++++||++| .+++..+..+. ..++.++||||
T Consensus 49 ~~~viGDIHG~~~--~L~~ll~~-~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE 125 (311)
T cd07419 49 PIKIFGDIHGQFG--DLMRLFDE-YGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHE 125 (311)
T ss_pred CEEEEEeccCCHH--HHHHHHHH-cCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccc
Confidence 4688999998543 22222222 1111 0 135889999999 57777776552 47899999999
Q ss_pred CC
Q psy10859 65 EG 66 (224)
Q Consensus 65 ~~ 66 (224)
..
T Consensus 126 ~~ 127 (311)
T cd07419 126 DR 127 (311)
T ss_pred hH
Confidence 75
No 113
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=98.32 E-value=4.1e-05 Score=61.95 Aligned_cols=62 Identities=29% Similarity=0.379 Sum_probs=42.8
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEG 66 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~ 66 (224)
.++++||+|++.. ++...+. .......+.++++||++| .+++..+..++ ..++.++||||..
T Consensus 44 ~i~vvGDIHG~~~--~L~~l~~-~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 44 PVNVCGDIHGQFY--DLQALFK-EGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred CEEEEEeCCCCHH--HHHHHHH-hcCCCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 4789999998543 2222222 222345688999999999 56777666542 3699999999975
No 114
>KOG2863|consensus
Probab=98.29 E-value=2.3e-06 Score=68.86 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=87.9
Q ss_pred CeEEEEeeccCCCCCCCChHHH-----HHhhcCCCccEEEEcCCCCC----------------hHHHHHHHh------cC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKF-----KKLLVPGRIQHILCTGNLVT----------------KETFDYLKT------LA 53 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l-----~~~~~~~~~D~vi~~GDl~~----------------~~~~~~l~~------l~ 53 (224)
|||++-+=.|+ .+.+.. .+..-...+|+++|+||+-. ++.-.+.+- ..
T Consensus 1 MrIaVqGCcHG-----~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 1 MRIAVQGCCHG-----ELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred Cceeeecccch-----hHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 89999999997 333211 22222458999999999975 111122221 13
Q ss_pred CcEEEecCCCCCCC---CCC-------c------ceEEEeCCEEEEeeecCcc--------cCCCCHHHHHHHHHhhcCC
Q psy10859 54 SDVHVVRGDFDEGT---SYP-------E------KKVVTVGQFRIGLCHGHDI--------IPWGDPEALALLQRQLDGT 109 (224)
Q Consensus 54 ~~v~~v~GNHD~~~---~~~-------~------~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~l~~~l~~~ 109 (224)
++.++|-||||... .+| . ...+.++|+|+..+.|... ..|.+.+. ..++......
T Consensus 76 VlTIFIGGNHEAsnyL~eLpyGGwVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~-stiRsiYHvR 154 (456)
T KOG2863|consen 76 VLTIFIGGNHEASNYLQELPYGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNN-STIRSIYHVR 154 (456)
T ss_pred eeEEEecCchHHHHHHHhcccCceeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccc-hhhhhhhhhh
Confidence 57899999999774 111 1 1256788899887666210 01110000 0111000000
Q ss_pred CCCCcee-eeeCCeEEEeeccCCCCC-----------------------CCCHHHHHHHhhhcCCcEEEECCCCCCceE
Q psy10859 110 SYPEKKV-VTVGQFRIGLCHGHDIIP-----------------------WGDPEALALLQRQLDVDILISGHTHKFEAY 164 (224)
Q Consensus 110 ~~~~~~~-~~~~~~~i~~~H~~~~~~-----------------------~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~ 164 (224)
.+.-... .......|+++|--|... ..++..+.++++..++.++++.|.|..+..
T Consensus 155 ~~dV~~Lkqlk~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAHLH~KFaA 233 (456)
T KOG2863|consen 155 ISDVAKLKQLKHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAHLHVKFAA 233 (456)
T ss_pred hhhhHHHHhhcCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchhhhhhHhhHHhh
Confidence 1110111 112345689999666321 124456677888899999999999998754
No 115
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=98.22 E-value=1.5e-06 Score=70.54 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=43.3
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCC----CccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPG----RIQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEGT 67 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~----~~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~~ 67 (224)
++++++|+|++.. .|.++++.. ..+.++++||++| .+++..|-.++ ..++.++||||...
T Consensus 52 ~~~vvGDiHG~~~------dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~ 124 (321)
T cd07420 52 QVTICGDLHGKLD------DLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHI 124 (321)
T ss_pred CeEEEEeCCCCHH------HHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhh
Confidence 6899999999543 234443311 2468999999999 57777776552 36999999999863
No 116
>KOG3770|consensus
Probab=98.05 E-value=0.00023 Score=61.38 Aligned_cols=128 Identities=17% Similarity=0.109 Sum_probs=73.4
Q ss_pred CccEEEEcCCCCC---------------hHHHHHHHhc--CCcEEEecCCCCCCC--CC---------------------
Q psy10859 30 RIQHILCTGNLVT---------------KETFDYLKTL--ASDVHVVRGDFDEGT--SY--------------------- 69 (224)
Q Consensus 30 ~~D~vi~~GDl~~---------------~~~~~~l~~l--~~~v~~v~GNHD~~~--~~--------------------- 69 (224)
++|+++.+||... ..+.+.+++. +.|||...||||... .|
T Consensus 210 ~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~ 289 (577)
T KOG3770|consen 210 DIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGA 289 (577)
T ss_pred CCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhhhhHHHHHHHhh
Confidence 4999999999996 2344445444 579999999999763 00
Q ss_pred -----Ccc----------e-EEEeCCEEEEeeecC-------ccc--CCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEE
Q psy10859 70 -----PEK----------K-VVTVGQFRIGLCHGH-------DII--PWGDPEALALLQRQLDGTSYPEKKVVTVGQFRI 124 (224)
Q Consensus 70 -----~~~----------~-~~~~~~~~~~~~~g~-------~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i 124 (224)
|.. + ..-.+|.+++.++-. ++. .....+.++|+..+|.. ....+...-
T Consensus 290 W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~-------ae~~GekVh 362 (577)
T KOG3770|consen 290 WSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQE-------AESAGEKVH 362 (577)
T ss_pred hhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHH-------HHhcCCEEE
Confidence 100 1 122367776644321 111 11134468888877632 233466777
Q ss_pred EeeccCCCCC--CCCHH-HHHHHhhhc--CCcEEEECCCCCCceE
Q psy10859 125 GLCHGHDIIP--WGDPE-ALALLQRQL--DVDILISGHTHKFEAY 164 (224)
Q Consensus 125 ~~~H~~~~~~--~~~~~-~l~~~~~~~--~~~~vi~GH~H~~~~~ 164 (224)
++.|-+|... +.++. .+..+..++ -+...++||+|.....
T Consensus 363 il~HIPpG~~~c~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 363 ILGHIPPGDGVCLEGWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred EEEeeCCCCcchhhhhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 8999777432 12221 222333322 2446799999997643
No 117
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=98.05 E-value=6.8e-06 Score=67.99 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=41.8
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhc---CCC-ccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLV---PGR-IQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEGT 67 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~---~~~-~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~~ 67 (224)
++.+++|+|+... + +.++++ ... -+.++++||++| .+++..+..++ ..++.++||||...
T Consensus 67 ~i~VvGDIHG~~~--d----L~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~ 139 (377)
T cd07418 67 EVVVVGDVHGQLH--D----VLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKF 139 (377)
T ss_pred CEEEEEecCCCHH--H----HHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeeccccc
Confidence 4789999998543 2 333332 112 346999999999 57777666553 36999999999763
No 118
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.96 E-value=0.0047 Score=47.78 Aligned_cols=164 Identities=19% Similarity=0.247 Sum_probs=91.3
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC------hHHHHHHHhcCCcEEEecCCCCCCC-------
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT------KETFDYLKTLASDVHVVRGDFDEGT------- 67 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~v~~v~GNHD~~~------- 67 (224)
||+++++|+=+......+.+.|..+-++.++|++|..|--.. .+.++.+.+.+..+ +..|||=..-
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dv-iT~GNH~wd~~ei~~~i 79 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADV-ITLGNHTWDQKEILDFI 79 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCCE-EecccccccchHHHHHh
Confidence 999999999985443233334444445778999999997765 67888888887665 7899996542
Q ss_pred ----------CCCcc------eEEEeCCEEEEeee--cCcccCC-CCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeec
Q psy10859 68 ----------SYPEK------KVVTVGQFRIGLCH--GHDIIPW-GDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCH 128 (224)
Q Consensus 68 ----------~~~~~------~~~~~~~~~~~~~~--g~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H 128 (224)
+||+. ..+...|.++.+++ |...+++ .+.-... +...+. ..+ ...+..++-.|
T Consensus 80 ~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~-~d~l~~--~~~-----~~~~~iiVDFH 151 (266)
T COG1692 80 DNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKA-ADKLLD--EIK-----LGTDLIIVDFH 151 (266)
T ss_pred hcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHH-HHHHHH--hCc-----cCCceEEEEcc
Confidence 34432 34567777776543 4333333 1111111 111010 000 01134566777
Q ss_pred cCCCCCCCCHHHHH-HHhhhcCCcEEEECCCCCCceE-EE--cCEEEE-cCCCCC
Q psy10859 129 GHDIIPWGDPEALA-LLQRQLDVDILISGHTHKFEAY-EH--ENKFYI-NPGSAT 178 (224)
Q Consensus 129 ~~~~~~~~~~~~l~-~~~~~~~~~~vi~GH~H~~~~~-~~--~~~~~i-n~Gs~~ 178 (224)
+. ..++..+ -+.-.-.+.+++.-|+|.|... ++ +|+-|+ ..|-++
T Consensus 152 AE-----tTSEK~a~g~yldGrvsavvGTHTHV~TaD~rIL~~GTayiTDvGMtG 201 (266)
T COG1692 152 AE-----TTSEKNAFGWYLDGRVSAVVGTHTHVPTADERILPKGTAYITDVGMTG 201 (266)
T ss_pred cc-----chhhhhhhheEEcCeEEEEEeccCccccccceecCCCcEEEecCcccc
Confidence 32 1222211 1111336889999999999643 22 445444 555544
No 119
>KOG3662|consensus
Probab=97.91 E-value=2.7e-05 Score=64.57 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=55.0
Q ss_pred CeEEEEeeccCCCCC--C---CChH----------HHHHhhcCCCccEEEEcCCCCC----------hHHHHHHHhc---
Q psy10859 1 MLVLVLGDLHIPHRT--S---GLPA----------KFKKLLVPGRIQHILCTGNLVT----------KETFDYLKTL--- 52 (224)
Q Consensus 1 mki~~isDiH~~~~~--~---~~~~----------~l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l--- 52 (224)
.|++.+||.|+-... . ...+ .+.......+||.++++|||+| .+-+++++++
T Consensus 49 ~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~ 128 (410)
T KOG3662|consen 49 TKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGR 128 (410)
T ss_pred eEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCC
Confidence 389999999973210 0 0001 1111222568999999999999 3444555554
Q ss_pred --CCcEEEecCCCCCCCCC--------------C-cceEEEeCCEEEEeeec
Q psy10859 53 --ASDVHVVRGDFDEGTSY--------------P-EKKVVTVGQFRIGLCHG 87 (224)
Q Consensus 53 --~~~v~~v~GNHD~~~~~--------------~-~~~~~~~~~~~~~~~~g 87 (224)
..+++.++||||..... . ....++.++..+.++..
T Consensus 129 k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~fg~~~r~f~v~~~tf~~~d~ 180 (410)
T KOG3662|consen 129 KGNIKVIYIAGNHDIGFGNELIPEWIDRFESVFGPTERRFDVGNLTFVMFDS 180 (410)
T ss_pred CCCCeeEEeCCccccccccccchhHHHHHHHhhcchhhhhccCCceeEEeee
Confidence 46899999999987522 1 23346677777766554
No 120
>PHA03008 hypothetical protein; Provisional
Probab=97.58 E-value=0.0018 Score=47.99 Aligned_cols=56 Identities=9% Similarity=-0.057 Sum_probs=40.6
Q ss_pred CCeEEEeeccCCCCC---CCCHHHHHHHhhhcCCcEEEECCCC---CCceEEEcCEEEEcCC
Q psy10859 120 GQFRIGLCHGHDIIP---WGDPEALALLQRQLDVDILISGHTH---KFEAYEHENKFYINPG 175 (224)
Q Consensus 120 ~~~~i~~~H~~~~~~---~~~~~~l~~~~~~~~~~~vi~GH~H---~~~~~~~~~~~~in~G 175 (224)
++..|+++|++|..- ..+.+.|.+.+.+.++++-++||.- .|.......+.++|..
T Consensus 160 P~tDILITHgPP~GhLD~~vGC~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~~y~di~f~nsn 221 (234)
T PHA03008 160 PKCDILITASPPFAILDDDLACGDLFSKVIKIKPKFHIFNGLTQFSHPNIFIYKDIIFINSN 221 (234)
T ss_pred CCCCEEEeCCCCccccccccCcHHHHHHHHHhCCcEEEeCCccccCCCcEEEecceEEEecc
Confidence 347799999999753 3456666555557789999999933 3566677888888853
No 121
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=97.39 E-value=0.00086 Score=51.47 Aligned_cols=85 Identities=18% Similarity=0.321 Sum_probs=49.7
Q ss_pred EEEEeeccCCCCCCCChHHHHHhh---c-CCCccEEEEcCCCCC----------------------hHHHHHHHhc--CC
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLL---V-PGRIQHILCTGNLVT----------------------KETFDYLKTL--AS 54 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~---~-~~~~D~vi~~GDl~~----------------------~~~~~~l~~l--~~ 54 (224)
|+++||.|..... ...+.|.+.+ . ...++.+|++|++++ .+..+.+.++ .+
T Consensus 1 Iv~~Sg~~~~~~~-~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (209)
T PF04042_consen 1 IVFASGPFLDSDN-LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPST 79 (209)
T ss_dssp EEEEES--CTTT--HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCS
T ss_pred CEEEecCccCCCH-hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhccccc
Confidence 6899999986432 1234555554 3 567999999999998 0122223333 47
Q ss_pred cEEEecCCCCCCCC--CC----------------------cceEEEeCCEEEEeeecC
Q psy10859 55 DVHVVRGDFDEGTS--YP----------------------EKKVVTVGQFRIGLCHGH 88 (224)
Q Consensus 55 ~v~~v~GNHD~~~~--~~----------------------~~~~~~~~~~~~~~~~g~ 88 (224)
++++|||++|.... +| ....+.++|..+++.+++
T Consensus 80 ~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d 137 (209)
T PF04042_consen 80 QVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGD 137 (209)
T ss_dssp EEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSH
T ss_pred EEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCc
Confidence 99999999998741 11 224577888888776653
No 122
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=97.26 E-value=0.0097 Score=46.70 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=68.1
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCC---------------CC------------CcceEEEeCCEEEEeeecCccc--CC
Q psy10859 43 KETFDYLKTLASDVHVVRGDFDEGT---------------SY------------PEKKVVTVGQFRIGLCHGHDII--PW 93 (224)
Q Consensus 43 ~~~~~~l~~l~~~v~~v~GNHD~~~---------------~~------------~~~~~~~~~~~~~~~~~g~~~~--~~ 93 (224)
.+.++.|+.++..+..+.+||++.. .+ .....++.+|.++.++.-.... .+
T Consensus 63 ~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~~~~~~ 142 (239)
T smart00854 63 PENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNNGW 142 (239)
T ss_pred HHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcCCCCCc
Confidence 6888999999888877778999874 01 1234567888888754321000 01
Q ss_pred CCH---H--------HHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCC---HHHHHHHhhhcCCcEEEECCCC
Q psy10859 94 GDP---E--------ALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGD---PEALALLQRQLDVDILISGHTH 159 (224)
Q Consensus 94 ~~~---~--------~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~---~~~l~~~~~~~~~~~vi~GH~H 159 (224)
..+ . ..+.+++.+. ++ .+..+..|+++|......... ...++..+...++|+++.||.|
T Consensus 143 ~~~~~~~g~~~~~~~~~~~i~~~i~--~l-----r~~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H 215 (239)
T smart00854 143 AASKDRPGVALLPDLDREKILADIA--RA-----RKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPH 215 (239)
T ss_pred ccCCCCCCeeecCcCCHHHHHHHHH--HH-----hccCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCC
Confidence 100 0 0111111110 01 112567889999765332211 1234333334689999999999
Q ss_pred CCceEE-EcCEEEE
Q psy10859 160 KFEAYE-HENKFYI 172 (224)
Q Consensus 160 ~~~~~~-~~~~~~i 172 (224)
.....+ +++++++
T Consensus 216 ~~~~~e~~~~~~I~ 229 (239)
T smart00854 216 VLQPIEIYKGKLIA 229 (239)
T ss_pred cCCceEEECCEEEE
Confidence 986553 4565443
No 123
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.18 E-value=0.012 Score=46.16 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=67.6
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCC---------------CC------------CcceEEEeCCEEEEeeecCcc-cC-C
Q psy10859 43 KETFDYLKTLASDVHVVRGDFDEGT---------------SY------------PEKKVVTVGQFRIGLCHGHDI-IP-W 93 (224)
Q Consensus 43 ~~~~~~l~~l~~~v~~v~GNHD~~~---------------~~------------~~~~~~~~~~~~~~~~~g~~~-~~-~ 93 (224)
++.++.|+.++..+..+.+||++.. .+ .....++.+|.++.++.-... .+ +
T Consensus 67 ~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~ 146 (239)
T cd07381 67 PEVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIP 146 (239)
T ss_pred HHHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCc
Confidence 6889999999888877777998764 01 123456778888775432100 00 0
Q ss_pred CCH---------HHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCCCC---HHHHHHHhhhcCCcEEEECCCCCC
Q psy10859 94 GDP---------EALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGD---PEALALLQRQLDVDILISGHTHKF 161 (224)
Q Consensus 94 ~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~---~~~l~~~~~~~~~~~vi~GH~H~~ 161 (224)
..+ ...+.+++.+. +. .+..+..|+++|......... ...+...+...++|+++.||.|..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~i~------~l-r~~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~ 219 (239)
T cd07381 147 LAAGARPGGVNPLDLERIAADIA------EA-KKKADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVL 219 (239)
T ss_pred CcccCCccccCccCHHHHHHHHH------HH-hhcCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcC
Confidence 000 00111111110 00 112677889999765332211 123333333568999999999998
Q ss_pred ceEE-EcCEEEE
Q psy10859 162 EAYE-HENKFYI 172 (224)
Q Consensus 162 ~~~~-~~~~~~i 172 (224)
...+ .++++++
T Consensus 220 q~~E~~~~~~I~ 231 (239)
T cd07381 220 QGIEIYKGKLIF 231 (239)
T ss_pred CCeEEECCEEEE
Confidence 7654 3454443
No 124
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=97.13 E-value=0.012 Score=45.96 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=78.6
Q ss_pred EEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC------hHHHHHHHhcCCcEEEecCCCCCCC----------
Q psy10859 4 LVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT------KETFDYLKTLASDVHVVRGDFDEGT---------- 67 (224)
Q Consensus 4 ~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~v~~v~GNHD~~~---------- 67 (224)
++|+|+=+......+.+.|.++.++.++|+||..|.=.. +..++.|.+.+..+ +..|||=+.-
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDv-iT~GNH~wdkkei~~~i~~~ 79 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAGVDV-ITMGNHIWDKKEIFDFIDKE 79 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SE-EE--TTTTSSTTHHHHHHH-
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCCCE-EecCcccccCcHHHHHHhcC
Confidence 578888863322223345556656789999999997765 77888888888776 7899997653
Q ss_pred -------CCCcc------eEEEeCCEEEEeee--cCcccCCCCHHHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCC
Q psy10859 68 -------SYPEK------KVVTVGQFRIGLCH--GHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDI 132 (224)
Q Consensus 68 -------~~~~~------~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~ 132 (224)
+||.. ..++.++.++.+++ |+.+++...-... .+.+.++ ......+..++-.|+.
T Consensus 80 ~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~-~~d~~l~-------~l~~~~~~iiVDFHAE-- 149 (253)
T PF13277_consen 80 PRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFR-AADRLLE-------ELKEETDIIIVDFHAE-- 149 (253)
T ss_dssp SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHH-HHHHHHH-------H-----SEEEEEEE-S--
T ss_pred CCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHH-HHHHHHH-------hccccCCEEEEEeecC--
Confidence 45442 46677888887654 5433332221111 1111110 0012334556778842
Q ss_pred CCCCCHHHHH-HHhhhcCCcEEEECCCCCCceE-EE--cCEEEE-cCCCCC
Q psy10859 133 IPWGDPEALA-LLQRQLDVDILISGHTHKFEAY-EH--ENKFYI-NPGSAT 178 (224)
Q Consensus 133 ~~~~~~~~l~-~~~~~~~~~~vi~GH~H~~~~~-~~--~~~~~i-n~Gs~~ 178 (224)
..+|..+ .+.-.-.+..|+.-|||.+... ++ +|+-|+ ..|-++
T Consensus 150 ---aTSEK~A~g~~lDGrvsaV~GTHTHVqTaDerILp~GTaYiTDvGMtG 197 (253)
T PF13277_consen 150 ---ATSEKQAMGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTG 197 (253)
T ss_dssp ----HHHHHHHHHHHBTTBSEEEEESSSS-BS--EE-TTS-EEES---EBE
T ss_pred ---cHHHHHHHHHHhCCcEEEEEeCCCCccCchhhccCCCCEEEecCcccc
Confidence 1222221 1222347999999999999643 22 577666 444433
No 125
>KOG0374|consensus
Probab=97.10 E-value=0.013 Score=48.17 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCHHHHHHHhhhcCCcEEEECCCCCCceEEE--cC--EEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEEEEEEEeec
Q psy10859 136 GDPEALALLQRQLDVDILISGHTHKFEAYEH--EN--KFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIA 211 (224)
Q Consensus 136 ~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~--~~--~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 211 (224)
.+++.++++.+..+.++++-||.=....++. ++ +++.++..-++. .....+++.++.+.. +.+..+.+
T Consensus 231 fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~-------~~n~gavm~Vd~~l~-~sf~~l~p 302 (331)
T KOG0374|consen 231 FGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGE-------FDNAGAVMRVDKNLK-CSFVILRP 302 (331)
T ss_pred ecHHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccc-------cCCceEEEEECCCCe-EEEEEecc
Confidence 3567788888999999999999988765532 33 344444333332 233467778876555 55555544
No 126
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=97.06 E-value=0.052 Score=42.89 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=72.9
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCC---------------CC------------CcceEEEeCCEEEEeeecCccc---C
Q psy10859 43 KETFDYLKTLASDVHVVRGDFDEGT---------------SY------------PEKKVVTVGQFRIGLCHGHDII---P 92 (224)
Q Consensus 43 ~~~~~~l~~l~~~v~~v~GNHD~~~---------------~~------------~~~~~~~~~~~~~~~~~g~~~~---~ 92 (224)
++.++.|+.++..++.+.-||-+.. .. .....++.+|.++.++...... .
T Consensus 65 ~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~ 144 (250)
T PF09587_consen 65 PEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYS 144 (250)
T ss_pred HHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCc
Confidence 6888999999989988988996653 00 1235678889988764321110 0
Q ss_pred CCCH-------------------HHHHHHHHhhcCCCCCCceeeeeCCeEEEeeccCCCCCC---CCHHHHHHHhhhcCC
Q psy10859 93 WGDP-------------------EALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPW---GDPEALALLQRQLDV 150 (224)
Q Consensus 93 ~~~~-------------------~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~H~~~~~~~---~~~~~l~~~~~~~~~ 150 (224)
.... ...+.+.+.+ +...+..+..|+.+|....+.. .....+...+-..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-------~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGa 217 (250)
T PF09587_consen 145 SANGNRPYGFSYRPDKAGLNPNRPGIERIKEDI-------REARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGA 217 (250)
T ss_pred cccccccccccccccccccccccchHHHHHHHH-------HHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCC
Confidence 0000 0001111111 0111346678999997643321 122334444446799
Q ss_pred cEEEECCCCCCceEE-EcCE-EEEcCCCCC
Q psy10859 151 DILISGHTHKFEAYE-HENK-FYINPGSAT 178 (224)
Q Consensus 151 ~~vi~GH~H~~~~~~-~~~~-~~in~Gs~~ 178 (224)
|+|+.+|.|.....+ ++++ .+...|.+.
T Consensus 218 DiIiG~HpHv~q~~E~y~~~~I~YSLGNfi 247 (250)
T PF09587_consen 218 DIIIGHHPHVIQPVEIYKGKPIFYSLGNFI 247 (250)
T ss_pred CEEEeCCCCcccceEEECCEEEEEeCcccc
Confidence 999999999987654 3444 444555543
No 127
>KOG0373|consensus
Probab=96.04 E-value=0.028 Score=42.85 Aligned_cols=59 Identities=25% Similarity=0.406 Sum_probs=37.1
Q ss_pred EEEEeeccCCCCCCCChHHHHHhhc--CCCcc-EEEEcCCCCC-----hHHHHHHHhc----CCcEEEecCCCCCCC
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLLV--PGRIQ-HILCTGNLVT-----KETFDYLKTL----ASDVHVVRGDFDEGT 67 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~~--~~~~D-~vi~~GDl~~-----~~~~~~l~~l----~~~v~~v~GNHD~~~ 67 (224)
+-+-+|||+... + +.+..+ -+-|| -.|+.||++| -+.+-.|--+ ..++..++||||..-
T Consensus 48 VTvCGDIHGQFy--D----L~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRq 118 (306)
T KOG0373|consen 48 VTVCGDIHGQFY--D----LLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQ 118 (306)
T ss_pred eeEeeccchhHH--H----HHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhh
Confidence 346799998432 2 333333 12244 4789999999 3444443322 457899999999873
No 128
>KOG4419|consensus
Probab=96.04 E-value=0.12 Score=45.04 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=41.1
Q ss_pred CeEEEEeeccCCCCC----CC----------ChHHHHHhhcCCCccEE-EEcCCCCC----------h-HHHHHHHhcCC
Q psy10859 1 MLVLVLGDLHIPHRT----SG----------LPAKFKKLLVPGRIQHI-LCTGNLVT----------K-ETFDYLKTLAS 54 (224)
Q Consensus 1 mki~~isDiH~~~~~----~~----------~~~~l~~~~~~~~~D~v-i~~GDl~~----------~-~~~~~l~~l~~ 54 (224)
+++.+.||+|+.... .+ +...+++..+..++|.+ +-+||+-+ + +.-..|.++..
T Consensus 43 ~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~~~ 122 (602)
T KOG4419|consen 43 PNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKMMP 122 (602)
T ss_pred ccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCCchHHHHHHHhcCc
Confidence 578999999983320 01 11234555556677765 57899998 2 33445555432
Q ss_pred cEEEecCCCCCCC
Q psy10859 55 DVHVVRGDFDEGT 67 (224)
Q Consensus 55 ~v~~v~GNHD~~~ 67 (224)
-=....|||+...
T Consensus 123 yD~l~lGNHEl~~ 135 (602)
T KOG4419|consen 123 YDILTLGNHELYQ 135 (602)
T ss_pred cchhhhcchhhhh
Confidence 1567899999774
No 129
>KOG0371|consensus
Probab=95.81 E-value=0.0083 Score=46.72 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=40.9
Q ss_pred EEEEeeccCCCCCCCChHHHHHhhc--CCCcc-EEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCCC
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLLV--PGRIQ-HILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEGT 67 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~~--~~~~D-~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~~ 67 (224)
..+.+|+|++.. + +.+.++ ...+| ..++.||.++ .+++..|-.++ ..|.+++||||...
T Consensus 62 vtvcGDvHGqf~--d----l~ELfkiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrq 132 (319)
T KOG0371|consen 62 VTVCGDVHGQFH--D----LIELFKIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQ 132 (319)
T ss_pred eEEecCcchhHH--H----HHHHHHccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHH
Confidence 467899998543 2 333332 33344 4788999999 57777776654 68999999999763
No 130
>KOG0372|consensus
Probab=95.69 E-value=0.014 Score=45.25 Aligned_cols=62 Identities=26% Similarity=0.325 Sum_probs=37.6
Q ss_pred EEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhc----CCcEEEecCCCCCCC
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTL----ASDVHVVRGDFDEGT 67 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~v~~v~GNHD~~~ 67 (224)
+.+.+|+|+... ++.+ +-++-..-.---.+++||++| -+.+-+|-.+ ...+..++||||...
T Consensus 45 vtvcGDIHGQf~--Dlle-lf~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 45 VTVCGDIHGQFY--DLLE-LFRIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred cEEeecccchHH--HHHH-HHHhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhh
Confidence 457899998432 2221 222211223345889999999 3444333322 357999999999874
No 131
>KOG2476|consensus
Probab=94.43 E-value=0.38 Score=40.81 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=39.1
Q ss_pred eEEEEeeccCCCCCCCChHHHHHh---hcCCC-ccEEEEcCCCCC-----hHHHHHHHh---cCCcEEEecCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKL---LVPGR-IQHILCTGNLVT-----KETFDYLKT---LASDVHVVRGDFD 64 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~---~~~~~-~D~vi~~GDl~~-----~~~~~~l~~---l~~~v~~v~GNHD 64 (224)
||++++|.-+. +.+.+.++ -++.+ .|++||.|++++ .++.+.... +.+|+|+.-+|.-
T Consensus 7 kILv~Gd~~Gr-----~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vPiptY~~g~~~~ 76 (528)
T KOG2476|consen 7 KILVCGDVEGR-----FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVPIPTYFLGDNAN 76 (528)
T ss_pred eEEEEcCcccc-----HHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCceeEEEecCCCC
Confidence 79999998873 33333332 22344 899999999998 344554443 2468999888874
No 132
>KOG3818|consensus
Probab=94.31 E-value=0.4 Score=40.51 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=44.4
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhc---CCCccEEEEcCCCCC-----------hHHHHHHHhc---------CCcEEE
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLV---PGRIQHILCTGNLVT-----------KETFDYLKTL---------ASDVHV 58 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~---~~~~D~vi~~GDl~~-----------~~~~~~l~~l---------~~~v~~ 58 (224)
+|+++||+|+... ...+++.++++ ..-|-++|++|-++. ++.++.|... +...++
T Consensus 284 ~fVfLSdV~LD~~--~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIF 361 (525)
T KOG3818|consen 284 SFVFLSDVFLDDK--KVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQFIF 361 (525)
T ss_pred eEEEEehhccccH--HHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceEEE
Confidence 5789999998432 33345666654 556889999999996 2333333321 357999
Q ss_pred ecCCCCCCC
Q psy10859 59 VRGDFDEGT 67 (224)
Q Consensus 59 v~GNHD~~~ 67 (224)
|||-.|.+.
T Consensus 362 VPGP~Dp~~ 370 (525)
T KOG3818|consen 362 VPGPNDPWV 370 (525)
T ss_pred ecCCCCCCc
Confidence 999999986
No 133
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=93.78 E-value=0.13 Score=41.22 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=42.2
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhc--------CCCccEEEEcCCCCC-------------hHHHHHHHh--------
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLV--------PGRIQHILCTGNLVT-------------KETFDYLKT-------- 51 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~--------~~~~D~vi~~GDl~~-------------~~~~~~l~~-------- 51 (224)
.+++++||+|+... ...++|.+.+. .+-|-.+|+.|+++. ++..+.|..
T Consensus 28 ~~~VilSDV~LD~p--~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSP--YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCH--HHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 36899999999543 23344554443 123888999999986 222232221
Q ss_pred c--CCcEEEecCCCCCCC
Q psy10859 52 L--ASDVHVVRGDFDEGT 67 (224)
Q Consensus 52 l--~~~v~~v~GNHD~~~ 67 (224)
+ .+.+++|||-+|.+.
T Consensus 106 L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHhcCeEEEECCCCCCCc
Confidence 1 468999999999864
No 134
>KOG1625|consensus
Probab=91.77 E-value=2.8 Score=36.70 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=34.8
Q ss_pred cCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEe
Q psy10859 148 LDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQ 198 (224)
Q Consensus 148 ~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~ 198 (224)
.-+|++|.=--=+++.+.+++..+||||-..- ....++|+.+.+.
T Consensus 534 ~~PdIlIlPSdLr~Fvk~V~~~V~iNpGr~aK------g~~~Gtfa~lti~ 578 (600)
T KOG1625|consen 534 STPDILILPSDLRHFVKDVNGCVVINPGRLAK------GTNGGTFAKLTIR 578 (600)
T ss_pred CCCcEEEechhhHHHHHhcCCeEEEcchhhcc------CcCCceeEEEEEe
Confidence 34788887666667778889999999999883 2246789988887
No 135
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=90.52 E-value=9.8 Score=32.23 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=32.2
Q ss_pred hcCCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEe
Q psy10859 147 QLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQ 198 (224)
Q Consensus 147 ~~~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~ 198 (224)
..-+|++|.---=+.+.+.++++.++|||-... +...+.|+-+++.
T Consensus 506 ~t~PDI~IvpS~L~hF~r~V~nvVvvNpG~~~k------~tn~g~~a~it~~ 551 (581)
T COG5214 506 MTAPDIYIVPSKLKHFCRDVGNVVVVNPGLQAK------ETNEGIAAHITLP 551 (581)
T ss_pred cCCCcEEEehHHHHHHHHhcCceEEECcchhhh------hccccceEEEecC
Confidence 345777776555555667789999999998773 2246778877764
No 136
>KOG0375|consensus
Probab=90.47 E-value=0.25 Score=40.56 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=38.1
Q ss_pred EEEEeeccCCCCCCCChHHHHHhhc---CCCccEEEEcCCCCC-----hHHHHHHHhcC----CcEEEecCCCCCC
Q psy10859 3 VLVLGDLHIPHRTSGLPAKFKKLLV---PGRIQHILCTGNLVT-----KETFDYLKTLA----SDVHVVRGDFDEG 66 (224)
Q Consensus 3 i~~isDiH~~~~~~~~~~~l~~~~~---~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~v~~v~GNHD~~ 66 (224)
|-+-+|||+..- + +.+..+ ..---..+++||.+| -+++-.|-.++ ...+...|||+-.
T Consensus 90 iTVCGDIHGQf~--D----LmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 90 ITVCGDIHGQFF--D----LMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECR 159 (517)
T ss_pred eeEecccchHHH--H----HHHHHHccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchh
Confidence 467899998432 2 222222 222345788999999 46666666553 4689999999965
No 137
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=90.01 E-value=0.2 Score=44.15 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=41.9
Q ss_pred HHHHHhhhcCCc----EEEECCCCCCc-----eEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCe
Q psy10859 140 ALALLQRQLDVD----ILISGHTHKFE-----AYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSN 201 (224)
Q Consensus 140 ~l~~~~~~~~~~----~vi~GH~H~~~-----~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~ 201 (224)
....++++.+.+ .+|.||+.... ..+-+|..++--|.++..|+. ..+-+||+++--+-|-
T Consensus 510 ~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskAYqk--~TGIAGYTLiyNS~gl 578 (640)
T PF06874_consen 510 ICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKAYQK--TTGIAGYTLIYNSYGL 578 (640)
T ss_pred HHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhhhcc--ccCccceEEEecCCcc
Confidence 334566666665 99999999763 345578888888998876543 3446789988766443
No 138
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=89.83 E-value=0.99 Score=38.96 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=20.0
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT 42 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~ 42 (224)
+||++.|+.+... .....+.++.+..++|+++++||.+.
T Consensus 106 ~r~a~~SC~~~~~---~~~~~~~~~a~~~~~D~~l~lGD~IY 144 (453)
T PF09423_consen 106 FRFAFGSCQNYED---GYFPAYRRIAERDDPDFVLHLGDQIY 144 (453)
T ss_dssp EEEEEE----CCC------HHHHHHTT-S--SEEEE-S-SS-
T ss_pred eEEEEECCCCccc---ChHHHHHhhhccCCCcEEEEeCCeee
Confidence 5899999988633 23455666665468999999999996
No 139
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=87.75 E-value=0.94 Score=30.38 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=37.5
Q ss_pred CeEEEEeeccC--CCCC------------CCChHHHHHhhcCCCccEEEEcCCCCC--hHHHHH-HHhcCCcEE-EecC
Q psy10859 1 MLVLVLGDLHI--PHRT------------SGLPAKFKKLLVPGRIQHILCTGNLVT--KETFDY-LKTLASDVH-VVRG 61 (224)
Q Consensus 1 mki~~isDiH~--~~~~------------~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~-l~~l~~~v~-~v~G 61 (224)
||++++||--. +.+. .+..+.|.+++.+.++..++++-++++ ++.++. +++...|.+ .+||
T Consensus 1 mkIaVIGD~dtv~GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 1 MEIAVIGSPEFTTGFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 89999999322 1000 012335666666778999999999988 455544 555445644 4454
No 140
>KOG0376|consensus
Probab=86.90 E-value=3.6 Score=35.37 Aligned_cols=63 Identities=22% Similarity=0.310 Sum_probs=37.5
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhc----CCcEEEecCCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTL----ASDVHVVRGDFDEG 66 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~v~~v~GNHD~~ 66 (224)
++.+-+|+|+..- ++.+.+.....-..-.-.+..||+++ .+++..+... ...+|...|||+..
T Consensus 215 ~~sv~gd~hGqfy--dl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~ 286 (476)
T KOG0376|consen 215 KISVCGDTHGQFY--DLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESD 286 (476)
T ss_pred eEEecCCcccccc--chhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccch
Confidence 5778899998543 33333333222222334677999999 2333333322 24799999999865
No 141
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=80.17 E-value=1.2 Score=37.97 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~ 66 (224)
++...+++-.+|.+=+.||++| ...++.|-+. -.+=+-+||||..
T Consensus 181 ala~~iqrLvVDhLHiVGDIyDRGP~pd~Imd~L~~y-hsvDiQWGNHDil 230 (648)
T COG3855 181 ALAYLIQRLVVDHLHIVGDIYDRGPYPDKIMDTLINY-HSVDIQWGNHDIL 230 (648)
T ss_pred HHHHHHHHHhhhheeeecccccCCCCchHHHHHHhhc-ccccccccCcceE
Confidence 3444455667999999999999 4566666665 2556789999965
No 142
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=68.32 E-value=16 Score=28.41 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=35.7
Q ss_pred HHHHhhcCCCccEEEEcCCC-CC----hHHHHHHHhcCCcEEEecCCCCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNL-VT----KETFDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl-~~----~~~~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
++.+.+.+.+.|++++.|=. +. .++++.+++...|++.-|||++.-.
T Consensus 18 ~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~ 69 (223)
T TIGR01768 18 EIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVS 69 (223)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccC
Confidence 34444556789999999966 43 4566777777789999999999764
No 143
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=65.07 E-value=24 Score=22.79 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=28.7
Q ss_pred HHHHhhcCCCccEEEEcCCCCC---hHHHHHHHhcCCcEEEecC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT---KETFDYLKTLASDVHVVRG 61 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~~~v~~v~G 61 (224)
...+.+++..+-.|++++|.-. ..+....++.+.|+.+++=
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3456667788999999999885 3333444455788888763
No 144
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=64.57 E-value=25 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=34.2
Q ss_pred HhhcCCCccEEEEcCCC-CC----hHHHHHHHhcCCcEEEecCCCCCCC
Q psy10859 24 KLLVPGRIQHILCTGNL-VT----KETFDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 24 ~~~~~~~~D~vi~~GDl-~~----~~~~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
+.+.+.+.|++++.|=. +. .++++.+++...|++.-|||++.-.
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~ 74 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIEGIS 74 (232)
T ss_pred HHHHhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCccccC
Confidence 44456789999999966 44 4666777776689999999999764
No 145
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=62.76 E-value=9.1 Score=25.84 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=24.9
Q ss_pred cCCCccEEEEcCCCCC--hHHHHHHHhcCCc-EEEecCCCC
Q psy10859 27 VPGRIQHILCTGNLVT--KETFDYLKTLASD-VHVVRGDFD 64 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~-v~~v~GNHD 64 (224)
.++++-.++++=++.+ ++.++.+++...| ++.||++|=
T Consensus 42 ~~~d~gII~Ite~~a~~i~~~i~~~~~~~~P~Il~IP~~~g 82 (104)
T PRK01395 42 AMEDYGIIYITEQIAADIPETIERYDNQVLPAIILIPSNQG 82 (104)
T ss_pred hcCCcEEEEEcHHHHHHhHHHHHHhcCCCCCEEEEeCCCCC
Confidence 3667888888888877 5556655543344 566777663
No 146
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=62.67 E-value=28 Score=26.67 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.6
Q ss_pred cCCCccEEEEcCCCCC
Q psy10859 27 VPGRIQHILCTGNLVT 42 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~ 42 (224)
.+..+|+++++||-+.
T Consensus 26 ~~~~~d~~l~~GD~IY 41 (228)
T cd07389 26 SEEDPDLFLHLGDQIY 41 (228)
T ss_pred cccCCCEEEEcCCeec
Confidence 3678999999999775
No 147
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=61.57 E-value=11 Score=29.93 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=24.4
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcCCCCC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT 42 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~ 42 (224)
+|++.||+.++... . ..+.+.+.+||.+|+.|=...
T Consensus 178 ~i~faSDvqGp~~~----~-~l~~i~e~~P~v~ii~GPpty 213 (304)
T COG2248 178 SIVFASDVQGPIND----E-ALEFILEKRPDVLIIGGPPTY 213 (304)
T ss_pred EEEEcccccCCCcc----H-HHHHHHhcCCCEEEecCCchh
Confidence 67888999875431 2 233334568999999997773
No 148
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=60.36 E-value=11 Score=27.27 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=26.4
Q ss_pred HHHHHhhcCCCccEEEEcCCCCC----hHHHHHHHhcCCcEEEec
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVT----KETFDYLKTLASDVHVVR 60 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~~~v~~v~ 60 (224)
+.+.+.+++.++|.++++=+..+ .+.++.+++.++++.++|
T Consensus 131 ~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 131 DDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp GGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE--
T ss_pred HHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEEeC
Confidence 46777778889999999988877 567777777788888876
No 149
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=60.07 E-value=20 Score=26.44 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.7
Q ss_pred CCCccEEEEcCCCCChHHHHHHHhcCCcEEEecC
Q psy10859 28 PGRIQHILCTGNLVTKETFDYLKTLASDVHVVRG 61 (224)
Q Consensus 28 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~G 61 (224)
..+||++|..+-....+..+.|++++.|++++..
T Consensus 67 ~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 67 ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 5789999986643334588999999999988864
No 150
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=59.37 E-value=31 Score=31.04 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=34.4
Q ss_pred HHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~ 66 (224)
++...++.--+|.+=+.||++| ..+++.|.+. -.|=+.+||||..
T Consensus 175 al~~lIqrL~VDhLHIvGDIyDRGp~pd~ImD~Lm~~-hsvDIQWGNHDIl 224 (640)
T PF06874_consen 175 ALSELIQRLAVDHLHIVGDIYDRGPRPDKIMDRLMNY-HSVDIQWGNHDIL 224 (640)
T ss_pred HHHHHHHHHhhhheeecccccCCCCChhHHHHHHhcC-CCccccccchHHH
Confidence 4555566678999999999999 4677777765 3566799999954
No 151
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=58.85 E-value=7.8 Score=25.94 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=32.1
Q ss_pred CeEEEEeeccC-------CCCC-------CCChHHHHHhhcCCCccEEEEcCCCCC--hHHHHHHHhcCCcEEEecCCC
Q psy10859 1 MLVLVLGDLHI-------PHRT-------SGLPAKFKKLLVPGRIQHILCTGNLVT--KETFDYLKTLASDVHVVRGDF 63 (224)
Q Consensus 1 mki~~isDiH~-------~~~~-------~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~v~~v~GNH 63 (224)
||+++|||--. +-.. .+..+.|.+++++.++..++++-++.+ ++.++ +...-++.+|+.+
T Consensus 1 mkIaVIgD~dtv~GFrLaGi~~~~~v~~~ee~~~~l~~l~~~~d~gII~ite~~~~~i~~~i~---~~~P~Ii~IP~~~ 76 (100)
T PRK03957 1 MKIAVVGDRDTVTGFRLAGLTEVYEVKNPEEAKNAIKELVENDEIGIIIITERIAEEIRDLIS---VALPIIVEIPDKS 76 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCCceEEeCCHHHHHHHHHHHhhCCCeEEEEEcHHHHHHHHHHHh---cCCCEEEEECCCC
Confidence 89999999432 1100 112234555555667778887766665 22222 3322355666655
No 152
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=58.05 E-value=21 Score=27.20 Aligned_cols=31 Identities=3% Similarity=0.059 Sum_probs=23.2
Q ss_pred CCccEEEEcCCCCChHHHHHHHhcCCcEEEe
Q psy10859 29 GRIQHILCTGNLVTKETFDYLKTLASDVHVV 59 (224)
Q Consensus 29 ~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v 59 (224)
..||+|++++=..+..++...+++++|++.+
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai 137 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVAL 137 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEE
Confidence 4589999987666677888888888887443
No 153
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=57.35 E-value=26 Score=24.36 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=32.6
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEecC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRG 61 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~G 61 (224)
.+.+++.+.++|.|++.+ +....+..|++.+..+|..+|
T Consensus 56 ~~a~~l~~~gvdvvi~~~--iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASN--IGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECc--cCHHHHHHHHHcCcEEEecCC
Confidence 356667788999999988 568899999999899988887
No 154
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=56.62 E-value=8.8 Score=31.93 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=26.0
Q ss_pred HHHHhhcCCCccEEEEcCCCCChH--HHHHHHhcCCcEEEecCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKE--TFDYLKTLASDVHVVRGD 62 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~--~~~~l~~l~~~v~~v~GN 62 (224)
.+.+.+++.+||+|++.||-+..- ++... .+++|+..+-|=
T Consensus 58 ~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~-~~~ipv~HieaG 100 (346)
T PF02350_consen 58 ELADVLEREKPDAVLVLGDRNEALAAALAAF-YLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHT-SEEEEETTSHHHHHHHHHHH-HTT-EEEEES--
T ss_pred HHHHHHHhcCCCEEEEEcCCchHHHHHHHHH-HhCCCEEEecCC
Confidence 456667788999999999998822 22222 236799999875
No 155
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=54.49 E-value=18 Score=28.26 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=13.2
Q ss_pred cCCcEEEecCCCCCCC
Q psy10859 52 LASDVHVVRGDFDEGT 67 (224)
Q Consensus 52 l~~~v~~v~GNHD~~~ 67 (224)
+...|+++.||||...
T Consensus 126 inknvvvlagnhein~ 141 (318)
T PF13258_consen 126 INKNVVVLAGNHEINF 141 (318)
T ss_pred cccceEEEecCceecc
Confidence 3468999999999875
No 156
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=54.20 E-value=15 Score=24.82 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=34.0
Q ss_pred HHHHhhcCCCccEEEEcCCCCC--h-HHHHHHHhcCCcEEE---ecCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT--K-ETFDYLKTLASDVHV---VRGDFD 64 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~--~-~~~~~l~~l~~~v~~---v~GNHD 64 (224)
++.+.+...++-.++++=++.+ + +.++.+++...|.++ +||+.+
T Consensus 36 ~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~~~~~P~II~Ipipg~~~ 85 (104)
T PRK01189 36 KFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLESSSKPLVVFIPLPGISE 85 (104)
T ss_pred HHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHhccCCCeEEEEeCCCCcc
Confidence 4555566778999999999988 4 788888876678777 888776
No 157
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=54.08 E-value=65 Score=25.26 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=36.4
Q ss_pred hHHHHHhhcCCCccEEEEcCCC-CC----hHHHHHHH-hcCCcEEEecCCCCCCC
Q psy10859 19 PAKFKKLLVPGRIQHILCTGNL-VT----KETFDYLK-TLASDVHVVRGDFDEGT 67 (224)
Q Consensus 19 ~~~l~~~~~~~~~D~vi~~GDl-~~----~~~~~~l~-~l~~~v~~v~GNHD~~~ 67 (224)
...+.+.+...+-|++++.|=. +. .++++.++ +.+.|++.-|||++.-.
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is 84 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGIS 84 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccC
Confidence 3455555567789999999954 22 56777777 55789999999999764
No 158
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=53.85 E-value=22 Score=27.48 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=23.0
Q ss_pred cEEEECCCCCCc--eEEEcCEEEEcCCCCCC
Q psy10859 151 DILISGHTHKFE--AYEHENKFYINPGSATG 179 (224)
Q Consensus 151 ~~vi~GH~H~~~--~~~~~~~~~in~Gs~~~ 179 (224)
+.|++|||.... ....++..-|.+|+..+
T Consensus 178 ~~Vv~GHt~~~~~~~~~~~~~i~iDTGA~~~ 208 (222)
T cd07413 178 KPVFVGHYWLNGEPAPLNPNVACLDYSAAKG 208 (222)
T ss_pred CCEEEecCCCCCCCccccCCEEEEecccccC
Confidence 679999999853 44558889999999864
No 159
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=53.57 E-value=30 Score=26.66 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=28.0
Q ss_pred cCCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 27 VPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
...+||+|+..+.......++.|++++.|++.+.
T Consensus 55 ~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 55 LSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVP 88 (235)
T ss_pred hccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEec
Confidence 3568999999887666778899999988998775
No 160
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=52.72 E-value=68 Score=25.53 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=37.0
Q ss_pred EEEEeeccCCCCC----CCChHHHHHhhcCCCccEEEEcCCCCC----hHHHHHHHhc-CCcEEEecC
Q psy10859 3 VLVLGDLHIPHRT----SGLPAKFKKLLVPGRIQHILCTGNLVT----KETFDYLKTL-ASDVHVVRG 61 (224)
Q Consensus 3 i~~isDiH~~~~~----~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l-~~~v~~v~G 61 (224)
+.+++|+|.-... ..+.+...+.+....+|.|+.+|.-+. .+.++.+++. ..|+++=-|
T Consensus 141 v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSG 208 (254)
T PF03437_consen 141 VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSG 208 (254)
T ss_pred eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecC
Confidence 5678899863321 133344445555778999999999886 4555555553 456665444
No 161
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=52.67 E-value=44 Score=22.69 Aligned_cols=44 Identities=23% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC--CcEEEecCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA--SDVHVVRGDFD 64 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~v~~v~GNHD 64 (224)
.+.+.+.+.++|.|.++.=... .+.++.+++.. ...+++-|+|-
T Consensus 41 ~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 41 EIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred HHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCC
Confidence 4555556677887777764333 45556666553 24567777663
No 162
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=52.27 E-value=29 Score=27.22 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=14.8
Q ss_pred hHHHHHHHhcCCcEEEecCCC
Q psy10859 43 KETFDYLKTLASDVHVVRGDF 63 (224)
Q Consensus 43 ~~~~~~l~~l~~~v~~v~GNH 63 (224)
.|-++.|++.++|+.++||=-
T Consensus 93 ~EQm~~L~~~gI~yevvPGVs 113 (254)
T COG2875 93 AEQMRELEALGIPYEVVPGVS 113 (254)
T ss_pred HHHHHHHHHcCCCeEEeCCch
Confidence 355566777788888888843
No 163
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=51.73 E-value=9 Score=27.45 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=22.0
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~G 38 (224)
|||++-|| |.+. ++.+.+.+.+++.+.+. +-.|
T Consensus 1 MkI~igsD-haG~---~lK~~l~~~L~~~g~eV-~D~G 33 (141)
T PRK12613 1 MAIILGAD-AHGN---ALKELIKSFLQEEGYDI-IDVT 33 (141)
T ss_pred CEEEEEeC-cchH---HHHHHHHHHHHHCCCEE-EEcC
Confidence 89999999 6543 44566777776666543 4445
No 164
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=50.20 E-value=42 Score=26.03 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=35.4
Q ss_pred HHHHHhhcCCCccEEEEcCCC-C--C-hHHHHHHHhcC--CcEEEecCCCCCCC
Q psy10859 20 AKFKKLLVPGRIQHILCTGNL-V--T-KETFDYLKTLA--SDVHVVRGDFDEGT 67 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl-~--~-~~~~~~l~~l~--~~v~~v~GNHD~~~ 67 (224)
..+.+.+.+.+.|++++.|=. + . .++++.+++.. .|++.-|||++.-.
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~~~~Pvilfp~~~~~i~ 68 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILFPSNPEAVS 68 (219)
T ss_pred HHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhcCCCCEEEeCCCccccC
Confidence 345665555789999999966 4 2 45666676663 79999999999753
No 165
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=50.07 E-value=21 Score=24.65 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=39.8
Q ss_pred EEEeeccCCCCCC--CCHHHHHHHhhhcCCcEEEECCCCCCceEEEcC--EEEEcCCCCCCCCCCCCCCCCCeEEEEEEe
Q psy10859 123 RIGLCHGHDIIPW--GDPEALALLQRQLDVDILISGHTHKFEAYEHEN--KFYINPGSATGAFNPLEPKVNPSFVLMDIQ 198 (224)
Q Consensus 123 ~i~~~H~~~~~~~--~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~~~~--~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~ 198 (224)
..+.+|+.+..+. .....+....+......+..||+|.+......+ ....|+|+.+.++.+ ......|++++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~~~g~~~~~--~~~~~~f~~~~~~ 122 (155)
T COG0639 45 GKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDG--GDVTAVFGIVHTP 122 (155)
T ss_pred CceeeecCCCCcchhhhHHHHHHHhhhhcccCCCccccccccCCCCCCCcccccccCCCCCCccc--cchhhHHhhhccc
Confidence 3445555554443 222223333333334788999999984443332 688899999964322 1334455544443
No 166
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=49.55 E-value=50 Score=25.84 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=32.6
Q ss_pred hHHHHHhhcCCCccEEEEcCCCCC---hHHHHHHHhc-CCcEEEecCCCCCCC
Q psy10859 19 PAKFKKLLVPGRIQHILCTGNLVT---KETFDYLKTL-ASDVHVVRGDFDEGT 67 (224)
Q Consensus 19 ~~~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l-~~~v~~v~GNHD~~~ 67 (224)
.+...+.+.+.+.|++++.|=..+ .++++.+++. ..|++.-|||.+.-.
T Consensus 21 ~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lPvilfPg~~~~vs 73 (230)
T PF01884_consen 21 PEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKRVTDLPVILFPGSPSQVS 73 (230)
T ss_dssp HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS-EEEETSTCCG--
T ss_pred cHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHhcCCCCEEEeCCChhhcC
Confidence 344444456789999999997723 5677777765 679999999999764
No 167
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=48.88 E-value=11 Score=27.09 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=22.2
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~G 38 (224)
|||++-|| |.+. ++.+.+.+.+++.+.+. +-.|
T Consensus 1 MkI~IgsD-h~G~---~lK~~i~~~L~~~G~eV-~D~G 33 (141)
T TIGR01118 1 MAIIIGSD-LAGK---RLKDVIKNFLVDNGFEV-IDVT 33 (141)
T ss_pred CEEEEEeC-cchH---HHHHHHHHHHHHCCCEE-EEcC
Confidence 89999999 7644 44567777776666544 3345
No 168
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=48.06 E-value=14 Score=26.81 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=22.9
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEE
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILC 36 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~ 36 (224)
|||++.|| |... .+.+.+.+.+++.+.+.+=+
T Consensus 1 MkIaig~D-hag~---~lK~~I~~~Lk~~g~~v~D~ 32 (151)
T COG0698 1 MKIAIGSD-HAGY---ELKEIIIDHLKSKGYEVIDF 32 (151)
T ss_pred CcEEEEcC-cccH---HHHHHHHHHHHHCCCEEEec
Confidence 99999999 6543 44566777777667766654
No 169
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=47.46 E-value=70 Score=21.26 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=29.5
Q ss_pred HHHHhhcCCCccEEEEcCCCCC---hHHHHHHHhcCCcEEEecCCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT---KETFDYLKTLASDVHVVRGDFDE 65 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~~~v~~v~GNHD~ 65 (224)
...+.+++.++-+||++.|.-. ..+....+..++|++...|+-+.
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~e 70 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVE 70 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHH
Confidence 3455666778999999999544 23333334447898877776543
No 170
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=47.37 E-value=12 Score=26.92 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=22.0
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~G 38 (224)
|||++-|| |.+. .+.+.+.+.++..+.+.+ -.|
T Consensus 1 mkI~igsD-haG~---~lK~~l~~~L~~~G~eV~-D~G 33 (142)
T PRK08621 1 MAIIIGAD-KAGF---ELKEVVKDYLEDNKYEVV-DVT 33 (142)
T ss_pred CEEEEEeC-cchH---HHHHHHHHHHHHCCCEEE-ECC
Confidence 89999999 7644 445667777766665443 334
No 171
>KOG0377|consensus
Probab=46.36 E-value=9.8 Score=32.55 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCHHHHHHHhhhcCCcEEEECCCCCCceEE
Q psy10859 136 GDPEALALLQRQLDVDILISGHTHKFEAYE 165 (224)
Q Consensus 136 ~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~ 165 (224)
.+++....++.+++..++|-.|-..|..++
T Consensus 360 FGpDvT~~~Lqk~~l~~liRSHECKpeGyE 389 (631)
T KOG0377|consen 360 FGPDVTDNFLQKHRLSYLIRSHECKPEGYE 389 (631)
T ss_pred eCchHHHHHHHHhCceeeeeecccCCCcce
Confidence 467778888899999999999999887654
No 172
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=44.92 E-value=1.2e+02 Score=24.05 Aligned_cols=60 Identities=27% Similarity=0.344 Sum_probs=39.3
Q ss_pred eEEEEeeccCCCCC----CCChHHHHHhhcCCCccEEEEcCCCCC----hHHHHHHHhc-CCcEEEecC
Q psy10859 2 LVLVLGDLHIPHRT----SGLPAKFKKLLVPGRIQHILCTGNLVT----KETFDYLKTL-ASDVHVVRG 61 (224)
Q Consensus 2 ki~~isDiH~~~~~----~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l-~~~v~~v~G 61 (224)
++-+++|+|-.... ..+.+...+.+....+|.||++|=-+. .+.++...+. ..|+++=.|
T Consensus 145 ~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvGSG 213 (263)
T COG0434 145 RVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSG 213 (263)
T ss_pred CcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEecC
Confidence 35678999963321 244556666667788999999998776 4555555544 456665555
No 173
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=44.39 E-value=40 Score=27.28 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.6
Q ss_pred ccEEEEcCCCCC-hHHHHHHHhcCCcE
Q psy10859 31 IQHILCTGNLVT-KETFDYLKTLASDV 56 (224)
Q Consensus 31 ~D~vi~~GDl~~-~~~~~~l~~l~~~v 56 (224)
-.-++..|+|++ +.+++.|++.|..+
T Consensus 31 ~~~vy~lG~iVHN~~Vv~~L~~~Gv~~ 57 (281)
T PRK12360 31 GKKIYTLGPLIHNNQVVSDLEEKGVKT 57 (281)
T ss_pred CCCeEEecCCcCCHHHHHHHHHCcCEE
Confidence 356999999998 89999999886543
No 174
>PHA02239 putative protein phosphatase
Probab=44.33 E-value=26 Score=27.47 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=20.0
Q ss_pred CcEEEECCCCCCc--eEEEcCEEEEcCCCCC
Q psy10859 150 VDILISGHTHKFE--AYEHENKFYINPGSAT 178 (224)
Q Consensus 150 ~~~vi~GH~H~~~--~~~~~~~~~in~Gs~~ 178 (224)
-..+++|||.... ....++..-|.+|++-
T Consensus 191 g~~vV~GHTp~~~~~~~~~~~~I~IDtGa~~ 221 (235)
T PHA02239 191 GFTYVCGHTPTDSGEVEINGDMLMCDVGAVF 221 (235)
T ss_pred CcEEEECCCCCCCCcccccCCEEEeecCccc
Confidence 4589999998753 3333566778888764
No 175
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=44.22 E-value=13 Score=27.50 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=22.4
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~G 38 (224)
|||++-|| |.+. .+.+.+.+.+++.+.+. +-.|
T Consensus 1 MkI~igsD-haG~---~lK~~l~~~L~~~G~eV-~D~G 33 (171)
T TIGR01119 1 MKIAIGCD-HIVT---DVKMEVSEFLKSKGYEV-LDVG 33 (171)
T ss_pred CEEEEEeC-CchH---HHHHHHHHHHHHCCCEE-EEeC
Confidence 89999999 7644 44567777777666544 4444
No 176
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=44.06 E-value=80 Score=20.15 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=30.4
Q ss_pred HHHHhhcCCCccEEEEcCCCCC---hHHHHHHHhcCCcEEEecCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT---KETFDYLKTLASDVHVVRGDFD 64 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~~~v~~v~GNHD 64 (224)
...+.+++.++-+||++.|.-. +.+....+..+.|++.+.-+.|
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~e 64 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKK 64 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 4556667788999999999988 3333444455788877774444
No 177
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=43.56 E-value=68 Score=20.82 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHhhcCCCccEEEEcCCCCC---hHHHHHHHhc--CCcEEEecCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT---KETFDYLKTL--ASDVHVVRGDFD 64 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l--~~~v~~v~GNHD 64 (224)
.+.+.+.+..+|.+++-.++-+ .++++.+++. ..|++++-.+.|
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred HHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 3444556678999999988887 4566666654 367777776665
No 178
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=42.83 E-value=38 Score=28.40 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=27.7
Q ss_pred HHHHhhcCCCccEEEEcCCCCCh--HHHHHHHhcCCcEEEe-cCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTK--ETFDYLKTLASDVHVV-RGDF 63 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~--~~~~~l~~l~~~v~~v-~GNH 63 (224)
.+.+++++.+||.|+..||-+.. ..+.. ..+++|+..+ -|++
T Consensus 84 ~~~~~~~~~~Pd~vlv~GD~~~~la~alaA-~~~~IPv~HveaG~r 128 (365)
T TIGR03568 84 GFSDAFERLKPDLVVVLGDRFEMLAAAIAA-ALLNIPIAHIHGGEV 128 (365)
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHHHHHHH-HHhCCcEEEEECCcc
Confidence 45666778899999999999872 12211 1236799855 4545
No 179
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=42.13 E-value=15 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=21.3
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~G 38 (224)
|||++-|| |.+. .+.+.+.+.+++.+.+. +-.|
T Consensus 1 mkI~igsD-haG~---~lK~~l~~~L~~~g~eV-~D~G 33 (148)
T PRK05571 1 MKIAIGSD-HAGF---ELKEEIIEHLEELGHEV-IDLG 33 (148)
T ss_pred CEEEEEeC-CchH---HHHHHHHHHHHHCCCEE-EEcC
Confidence 89999999 7644 44556777776555543 3344
No 180
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=41.76 E-value=64 Score=25.15 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
.+.+.+...++|.+|+.+...+...++.+.+.+.|++++-
T Consensus 55 ~~~~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 94 (275)
T cd06295 55 WLARYLASGRADGVILIGQHDQDPLPERLAETGLPFVVWG 94 (275)
T ss_pred HHHHHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEEEEC
Confidence 3445555678999998876555566777777788998773
No 181
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=41.51 E-value=16 Score=27.15 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=22.1
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~G 38 (224)
|||++-|| |.+. .+.+.+.+.+++.+.+ |+-.|
T Consensus 1 MkI~IgsD-haG~---~lK~~l~~~L~~~G~e-V~D~G 33 (171)
T PRK08622 1 MKIAIGCD-HIVT---DEKMAVSDYLKSKGHE-VIDVG 33 (171)
T ss_pred CEEEEEeC-cchH---HHHHHHHHHHHHCCCE-EEEcC
Confidence 89999999 6543 3456677777665553 45555
No 182
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=41.09 E-value=16 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=22.0
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~G 38 (224)
|||++-|| |.+. .+.+.+.+.++..+.+. +-.|
T Consensus 1 MkI~igsD-haG~---~lK~~l~~~L~~~G~eV-~D~G 33 (171)
T PRK12615 1 MKIAIGCD-HIVT---NEKMAVSDFLKSKGYDV-IDCG 33 (171)
T ss_pred CEEEEEeC-chhH---HHHHHHHHHHHHCCCEE-EEcC
Confidence 89999999 7644 44566777776666543 4445
No 183
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=39.95 E-value=69 Score=26.39 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=41.7
Q ss_pred cCCCccEEEEcCCCCC--hHHHHHHHhcCCcEEEecCCCCCCC------CCCcceEEEeCCEEEEeeec
Q psy10859 27 VPGRIQHILCTGNLVT--KETFDYLKTLASDVHVVRGDFDEGT------SYPEKKVVTVGQFRIGLCHG 87 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~v~~v~GNHD~~~------~~~~~~~~~~~~~~~~~~~g 87 (224)
.+.++|.|++.|-=-- ...-..|++++.+|.-+.|+.-+.. .+.+.+...+++.+.++++|
T Consensus 72 ~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~G 140 (337)
T COG2247 72 IELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYG 140 (337)
T ss_pred HhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEec
Confidence 3568999888875444 5566778899999999999876653 12222223456678888888
No 184
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=38.76 E-value=56 Score=27.67 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=27.2
Q ss_pred HHHHhhcCCCccEEEEcCCCCC--h-HHHHHHHhcCCcEEEecC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT--K-ETFDYLKTLASDVHVVRG 61 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~--~-~~~~~l~~l~~~v~~v~G 61 (224)
.+.+.+.+.+||.|++-||-.. . ....... .+||..|-+
T Consensus 83 ~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~--~IpV~HvEA 124 (383)
T COG0381 83 GLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYL--KIPVGHVEA 124 (383)
T ss_pred HHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHh--CCceEEEec
Confidence 4566677899999999999988 2 2223333 468877754
No 185
>PRK09982 universal stress protein UspD; Provisional
Probab=38.48 E-value=36 Score=23.90 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=18.5
Q ss_pred HHHHHHHhhhcCCcEEEECCCCCC
Q psy10859 138 PEALALLQRQLDVDILISGHTHKF 161 (224)
Q Consensus 138 ~~~l~~~~~~~~~~~vi~GH~H~~ 161 (224)
.+.+.+.+++.++|++++|| |+.
T Consensus 92 ~~~I~~~A~~~~aDLIVmG~-~~~ 114 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCGH-HHS 114 (142)
T ss_pred HHHHHHHHHHcCCCEEEEeC-Chh
Confidence 56677778889999999997 643
No 186
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.74 E-value=52 Score=26.87 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=21.6
Q ss_pred ccEEEEcCCCCC-hHHHHHHHhcCCcE
Q psy10859 31 IQHILCTGNLVT-KETFDYLKTLASDV 56 (224)
Q Consensus 31 ~D~vi~~GDl~~-~~~~~~l~~l~~~v 56 (224)
..-++.+|+|++ +.+++.|++.|..+
T Consensus 30 ~~~iytlG~iIHN~~vv~~L~~~GV~~ 56 (298)
T PRK01045 30 GAPIYVRHEIVHNRYVVERLEKKGAIF 56 (298)
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCEE
Confidence 355999999998 89999999986544
No 187
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=36.32 E-value=61 Score=25.48 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=22.0
Q ss_pred cEEEEcCCCCC---------------hHHHHHHHhcCCcEEEecCCCCCC
Q psy10859 32 QHILCTGNLVT---------------KETFDYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 32 D~vi~~GDl~~---------------~~~~~~l~~l~~~v~~v~GNHD~~ 66 (224)
+-++++||.+- .+.++.+.++.....+++| |++.
T Consensus 119 ~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~~ 167 (248)
T TIGR03413 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEYT 167 (248)
T ss_pred CCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCch
Confidence 45789999752 2334455555555677888 8875
No 188
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.03 E-value=60 Score=25.70 Aligned_cols=31 Identities=10% Similarity=-0.046 Sum_probs=24.4
Q ss_pred CccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 30 RIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 30 ~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
-||++|+.-=-.++.++..-+++++||+++.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALV 186 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEe
Confidence 4999998776566777888888899987764
No 189
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=35.81 E-value=26 Score=25.43 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=21.1
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcC--CCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVP--GRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~--~~~D~vi~~G 38 (224)
|||++-|| |.+. .+.+.+.+.+++ .+.+ |+-.|
T Consensus 3 mkI~igsD-haG~---~lK~~l~~~L~~~~~g~e-V~D~G 37 (151)
T PTZ00215 3 KKVAIGSD-HAGF---DLKNEIIDYIKNKGKEYK-IEDMG 37 (151)
T ss_pred cEEEEEeC-CchH---HHHHHHHHHHHhccCCCE-EEEcC
Confidence 89999999 6543 445667777766 5543 34444
No 190
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=35.63 E-value=95 Score=20.68 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=26.1
Q ss_pred HHHHHhhcCCCccEEEEcCCCCC--------hHHHHHHHhcCCcEEEec
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVT--------KETFDYLKTLASDVHVVR 60 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~--------~~~~~~l~~l~~~v~~v~ 60 (224)
+.+.+.+++.++|+|++.--=-. .-.-+.++...+||.++|
T Consensus 92 ~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 92 DAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred hhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 45666666778888887654422 344455666677887775
No 191
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=35.08 E-value=24 Score=25.57 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=21.5
Q ss_pred CeEEEEeeccCCCCCCCChHHHHHhhcCCCccEEEEcC
Q psy10859 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 1 mki~~isDiH~~~~~~~~~~~l~~~~~~~~~D~vi~~G 38 (224)
|||++-|| |.+. .+.+.+.+.+++.+.+ |+-.|
T Consensus 1 MkI~igsD-haG~---~lK~~l~~~L~~~g~e-V~D~G 33 (148)
T TIGR02133 1 MRVVLGHD-HAGF---EYKEALWLDLAAHEPE-VCDVG 33 (148)
T ss_pred CEEEEEeC-chhH---HHHHHHHHHHHHCCCE-EEECC
Confidence 89999999 7644 3445677777665653 34445
No 192
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=34.93 E-value=1.4e+02 Score=20.51 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=28.6
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHHH----HhcCCcEEEecCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDYL----KTLASDVHVVRGDFD 64 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l----~~l~~~v~~v~GNHD 64 (224)
...+.+++..+-+||+++|....+..+.+ +..++|++++.-+.|
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~e 80 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKED 80 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHH
Confidence 34556677889999999999874443333 444788655544333
No 193
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=34.88 E-value=71 Score=20.96 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=22.9
Q ss_pred eCCeEEEeeccCCCCCCCC-HHHHHHHhhhcCCcEEEECC
Q psy10859 119 VGQFRIGLCHGHDIIPWGD-PEALALLQRQLDVDILISGH 157 (224)
Q Consensus 119 ~~~~~i~~~H~~~~~~~~~-~~~l~~~~~~~~~~~vi~GH 157 (224)
.+...+.+.|.||..+... .+.+ ...+....+++|.|-
T Consensus 54 ~~~~~v~i~HsHP~g~~~PS~~D~-~~~~~~~~~~iIv~~ 92 (101)
T cd08059 54 IGMKVVGLVHSHPSGSCRPSEADL-SLFTRFGLYHVIVCY 92 (101)
T ss_pred CCCcEEEEEecCcCCCCCCCHHHH-HHHHhcCCeEEEEEC
Confidence 3456788999998654332 2333 233445777777764
No 194
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=34.65 E-value=24 Score=30.68 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=19.4
Q ss_pred CHHHHHHHhhhcCCc--EEEECCCCCC
Q psy10859 137 DPEALALLQRQLDVD--ILISGHTHKF 161 (224)
Q Consensus 137 ~~~~l~~~~~~~~~~--~vi~GH~H~~ 161 (224)
+.+.+..+++..++. +++.|-.|..
T Consensus 392 ~RerLl~fi~~~~~~N~V~LtgDvH~~ 418 (522)
T COG3540 392 GRERLLRFIADRKIRNTVVLTGDVHYS 418 (522)
T ss_pred cHHHHHHHHHhcCCCCcEEEechhHHH
Confidence 456777788777665 8999999975
No 195
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=34.60 E-value=82 Score=24.15 Aligned_cols=31 Identities=6% Similarity=-0.050 Sum_probs=23.8
Q ss_pred CccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 30 RIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 30 ~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
.||+||++.=..+..++..-+++++|++.+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~Iaiv 144 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALC 144 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEE
Confidence 6888888886666778888888888876654
No 196
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=34.23 E-value=1.3e+02 Score=20.33 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHhhcCCCccEEEEcCCCCC---hHHHHHHHhcCCcEEEecCCCCC
Q psy10859 22 FKKLLVPGRIQHILCTGNLVT---KETFDYLKTLASDVHVVRGDFDE 65 (224)
Q Consensus 22 l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~~~v~~v~GNHD~ 65 (224)
..+.++..++-+||++.|.-+ +......+..++|++...|+-+.
T Consensus 33 vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~e 79 (108)
T PTZ00106 33 TLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNND 79 (108)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHH
Confidence 455566788999999999987 33344444457898766676654
No 197
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.16 E-value=1.1e+02 Score=21.60 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC--CcEEEecCCC
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA--SDVHVVRGDF 63 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~v~~v~GNH 63 (224)
+.+.+.+.++++|.+.+++=... +++++.|++.+ ...+++-||-
T Consensus 43 e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~ 93 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVI 93 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 34555555778999888885544 56667776653 2345555544
No 198
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=34.14 E-value=1.3e+02 Score=19.30 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=25.2
Q ss_pred HHHHhhcCCCccEEEEcCCCCC---hHHHHHHHhcCCcEE
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT---KETFDYLKTLASDVH 57 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~~~v~ 57 (224)
...+.+++.++-+||++.|.-. +.+.+.-+..+.|++
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~ 54 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIV 54 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEE
Confidence 4556667788999999999886 333333444467884
No 199
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=34.05 E-value=98 Score=19.68 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=29.3
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEe
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVV 59 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v 59 (224)
.+.+.+...++|.||+.+ +.......|.+.+..++..
T Consensus 44 ~~~~~l~~~~v~~li~~~--iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGG--IGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHHHHHHTTESEEEESC--SCHHHHHHHHHTTSEEEES
T ss_pred hHHHHHHHcCCCEEEEeC--CCHHHHHHHHHCCCEEEEc
Confidence 466666668999999888 6888889999888877664
No 200
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.75 E-value=1.1e+02 Score=19.96 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=25.8
Q ss_pred HHHhhcCCCccEEEEcCCCCC----hHHHHHHHhcCCcEEEec
Q psy10859 22 FKKLLVPGRIQHILCTGNLVT----KETFDYLKTLASDVHVVR 60 (224)
Q Consensus 22 l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~~~v~~v~ 60 (224)
|...+ .++|+||+.=|.++ ..+.+..++.+.|++++.
T Consensus 42 l~~~i--~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKI--KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHhc--CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 44443 57899999888888 445555556678888775
No 201
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=32.99 E-value=1.2e+02 Score=24.18 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHH----HHHHhcCCcEEEecCCCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETF----DYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~----~~l~~l~~~v~~v~GNHD~~ 66 (224)
.....++...+-+||+++|....+.. .+.+..++|+.++.+-.+..
T Consensus 139 ~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG 188 (263)
T PTZ00222 139 EVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLG 188 (263)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHH
Confidence 45566778889999999999884443 45555688998888876654
No 202
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=32.38 E-value=78 Score=26.17 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=26.8
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHH-HHhcCCcEEEecC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDY-LKTLASDVHVVRG 61 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~-l~~l~~~v~~v~G 61 (224)
.+.+++++.+||.|+..||....-.... -..+++|+..+.|
T Consensus 77 ~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~ 118 (365)
T TIGR00236 77 GLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEA 118 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeC
Confidence 4666777889999999999765211111 1234679887744
No 203
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.70 E-value=1.2e+02 Score=20.72 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=23.6
Q ss_pred HHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC--CcEEEecCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA--SDVHVVRGD 62 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~v~~v~GN 62 (224)
.+.+.+.+.++|+|.+++-... ++.++.|++.+ ...+++-|+
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 4555555667888777775544 45555555542 234455554
No 204
>PRK06683 hypothetical protein; Provisional
Probab=31.49 E-value=1.4e+02 Score=19.03 Aligned_cols=40 Identities=5% Similarity=0.025 Sum_probs=28.2
Q ss_pred HHHHhhcCCCccEEEEcCCCCC---hHHHHHHHhcCCcEEEec
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT---KETFDYLKTLASDVHVVR 60 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~~~v~~v~ 60 (224)
...+.+++.++-.||++.|.-+ +.+.+..+..+.|++.+.
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 3455667788999999999887 334444455577887765
No 205
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=30.92 E-value=1.1e+02 Score=22.43 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=18.3
Q ss_pred HHHHHHhhhcCCcEEEECCCCCCc
Q psy10859 139 EALALLQRQLDVDILISGHTHKFE 162 (224)
Q Consensus 139 ~~l~~~~~~~~~~~vi~GH~H~~~ 162 (224)
+.+..++++.+++++++||+....
T Consensus 81 ~~l~~~i~~~~p~~Vl~g~t~~g~ 104 (181)
T cd01985 81 KALAALIKKEKPDLILAGATSIGK 104 (181)
T ss_pred HHHHHHHHHhCCCEEEECCccccc
Confidence 345566677789999999999853
No 206
>KOG0075|consensus
Probab=30.84 E-value=70 Score=23.33 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=38.6
Q ss_pred CCcEEEECCCCCCceEEEcCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCeEEEEEEEeecCce
Q psy10859 149 DVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEV 214 (224)
Q Consensus 149 ~~~~vi~GH~H~~~~~~~~~~~~in~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 214 (224)
..++.+.|=.- -+.+.++|.-+.+. ...+-.+..||.+-+++.|.++++.+++.+++.
T Consensus 20 emel~lvGLq~------sGKtt~Vn~ia~g~--~~edmiptvGfnmrk~tkgnvtiklwD~gGq~r 77 (186)
T KOG0075|consen 20 EMELSLVGLQN------SGKTTLVNVIARGQ--YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 77 (186)
T ss_pred eeeEEEEeecc------CCcceEEEEEeecc--chhhhcccccceeEEeccCceEEEEEecCCCcc
Confidence 34556655322 34556666544432 123344578999999999999999999998864
No 207
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=30.82 E-value=92 Score=25.50 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=26.1
Q ss_pred HHHhhcCCCccEEEEcCCCCChH-HHHHHHhcCCcEEEecCC
Q psy10859 22 FKKLLVPGRIQHILCTGNLVTKE-TFDYLKTLASDVHVVRGD 62 (224)
Q Consensus 22 l~~~~~~~~~D~vi~~GDl~~~~-~~~~l~~l~~~v~~v~GN 62 (224)
+.+.+.+.+||.|++.||....- ..-.-+..+.|++++.|+
T Consensus 80 l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g 121 (363)
T cd03786 80 LEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecc
Confidence 44455567999999999875421 111222346799888765
No 208
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=30.73 E-value=1.2e+02 Score=20.05 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=24.2
Q ss_pred HHHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcE
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDV 56 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v 56 (224)
+++.+.++..++|.|++-++|.-.+...+=+.++++|
T Consensus 47 eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V 83 (95)
T PF13167_consen 47 EEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKV 83 (95)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCee
Confidence 4566667778999999999887644433333344444
No 209
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=30.44 E-value=1.5e+02 Score=20.40 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHHH----HhcCCcEEEecCCCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDYL----KTLASDVHVVRGDFDEG 66 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l----~~l~~~v~~v~GNHD~~ 66 (224)
...+.+++.++.+|+++.|.--.+....+ ++.+.|+.+++--.+..
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG 83 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELG 83 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 34556677889999999998744444333 33478988887655543
No 210
>PRK15005 universal stress protein F; Provisional
Probab=30.12 E-value=1.2e+02 Score=21.01 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=17.6
Q ss_pred ccEEEEcCCCCChHHHHHHHhcCCcEEEecCCC
Q psy10859 31 IQHILCTGNLVTKETFDYLKTLASDVHVVRGDF 63 (224)
Q Consensus 31 ~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~GNH 63 (224)
+...+..||-. ...++..++.+... +|.|.|
T Consensus 86 ~~~~v~~G~p~-~~I~~~a~~~~~DL-IV~Gs~ 116 (144)
T PRK15005 86 VHVHVEEGSPK-DRILELAKKIPADM-IIIASH 116 (144)
T ss_pred eEEEEeCCCHH-HHHHHHHHHcCCCE-EEEeCC
Confidence 45666777643 34555555555454 444777
No 211
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=29.95 E-value=2.1e+02 Score=20.57 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=35.6
Q ss_pred cCEEEEcCCCCCCCCCCCCCC-------CC---CeEEEEEEeCCeEEEEEEEeecCce-eEEEEeec
Q psy10859 167 ENKFYINPGSATGAFNPLEPK-------VN---PSFVLMDIQSSNVVTYVYQLIADEV-TVERIDYK 222 (224)
Q Consensus 167 ~~~~~in~Gs~~~~~~~~~~~-------~~---~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 222 (224)
.|..++|+|++...|.|..+. .. ..=..+++..+++.++-++...+.+ +...|+..
T Consensus 18 ~GFtVVNTg~Ietg~~~dGp~ggE~~~p~~~~f~qGL~V~vy~drV~v~A~Df~~~~~IkklsI~~~ 84 (158)
T PF13285_consen 18 RGFTVVNTGAIETGWTSDGPDGGEKTDPDGESFKQGLQVEVYGDRVVVEARDFKRGKWIKKLSIHDG 84 (158)
T ss_pred CCcEEEeccceeccccCCCCCCCcEecccccccccceEEEEeCCeEEEEEEeccCCcchheeeeehh
Confidence 467899999998877654411 01 1224577778888888888864444 33335543
No 212
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=29.81 E-value=2.6e+02 Score=21.46 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=32.4
Q ss_pred hhcCCCccEEEEcCCC-CC----hHHHHHHHh-cCCcEEEecCCCCCCC
Q psy10859 25 LLVPGRIQHILCTGNL-VT----KETFDYLKT-LASDVHVVRGDFDEGT 67 (224)
Q Consensus 25 ~~~~~~~D~vi~~GDl-~~----~~~~~~l~~-l~~~v~~v~GNHD~~~ 67 (224)
.+.+.+.|.+++.|=. ++ .++++.+++ .+.|++.-|||++.-.
T Consensus 19 ~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 19 NAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLS 67 (205)
T ss_pred HHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccC
Confidence 4446779999999865 34 456677777 3689999999999654
No 213
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=29.72 E-value=1.3e+02 Score=24.06 Aligned_cols=46 Identities=9% Similarity=0.136 Sum_probs=32.5
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHH----HHHHhcCCcEEEecCCCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETF----DYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~----~~l~~l~~~v~~v~GNHD~~ 66 (224)
.....++...+-+||+++|.-..+.. ...+..++|++++.+--+..
T Consensus 139 ~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~eLG 188 (266)
T PTZ00365 139 HVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLG 188 (266)
T ss_pred HHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHHHH
Confidence 34555677889999999999884444 44455578998887765543
No 214
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=29.72 E-value=1.7e+02 Score=19.47 Aligned_cols=43 Identities=30% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHhhcCCCccEEEEcCCCCC--hHHHHHHHhc-CCcEEEecCCCCC
Q psy10859 23 KKLLVPGRIQHILCTGNLVT--KETFDYLKTL-ASDVHVVRGDFDE 65 (224)
Q Consensus 23 ~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l-~~~v~~v~GNHD~ 65 (224)
.+.++..++-.|++++..=. ++.++.-..+ ++||+.-+||.-.
T Consensus 28 iK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt~~e 73 (100)
T COG1911 28 IKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGTSVE 73 (100)
T ss_pred HHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCCcee
Confidence 34455667889999987665 4555554444 6799999998754
No 215
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.95 E-value=1.7e+02 Score=20.72 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC--CcEEEecCC
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA--SDVHVVRGD 62 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~v~~v~GN 62 (224)
+.+.+.+.++++|.|-++.=+.. +++++.|++.+ .+++++-|+
T Consensus 42 e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 42 EEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred HHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 45666666788999888774444 67777777653 355667775
No 216
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=28.94 E-value=81 Score=25.68 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=22.6
Q ss_pred HHHHHHHhhhcCCcEEEECCCCCCc-eEEEcCE
Q psy10859 138 PEALALLQRQLDVDILISGHTHKFE-AYEHENK 169 (224)
Q Consensus 138 ~~~l~~~~~~~~~~~vi~GH~H~~~-~~~~~~~ 169 (224)
+..+...++.+++-..++||-|-.- .++..+.
T Consensus 311 r~all~~lqGYNvvg~fhGhkhd~~mayrr~~l 343 (392)
T COG5555 311 RGALLFFLQGYNVVGTFHGHKHDFNMAYRRYDL 343 (392)
T ss_pred cchHHHhhcCceeEEeccccccccceeeeecCc
Confidence 4456667788999999999999753 3344433
No 217
>PLN02469 hydroxyacylglutathione hydrolase
Probab=28.68 E-value=96 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=20.5
Q ss_pred cEEEEcCC-CCC-----------hHHHHH----HHhcCCcEEEecCCCCCCC
Q psy10859 32 QHILCTGN-LVT-----------KETFDY----LKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 32 D~vi~~GD-l~~-----------~~~~~~----l~~l~~~v~~v~GNHD~~~ 67 (224)
+-++++|| |+. .+.++. +..+.....+.+| |++..
T Consensus 128 ~~~lFtGDtLf~~g~Gr~~~g~~~~~~~Sl~~~l~~Lp~~t~vypG-H~yt~ 178 (258)
T PLN02469 128 DPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCG-HEYTV 178 (258)
T ss_pred CCEEEecCcccCCCcCCCCCCCHHHHHHHHHHHHHcCCCCeEEEcC-CCCch
Confidence 34788999 332 233333 3444456777777 88763
No 218
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=28.51 E-value=1.2e+02 Score=24.32 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=25.5
Q ss_pred cCCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 27 VPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
...+||+||..+. +..+..+.|++++.|++++.
T Consensus 88 ~al~PDlIi~~~~-~~~~~~~~l~~~gi~v~~~~ 120 (289)
T TIGR03659 88 KSLKPTVVLSVTT-LEEDLGPKFKQLGVEATFLN 120 (289)
T ss_pred hccCCcEEEEcCc-ccHHHHHHHHHcCCcEEEEc
Confidence 3568999998764 45677889999988987763
No 219
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=28.44 E-value=1.2e+02 Score=24.08 Aligned_cols=32 Identities=6% Similarity=-0.031 Sum_probs=24.4
Q ss_pred CCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 29 GRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 29 ~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
..||+||++.=..|...+..-+.+++|++.+.
T Consensus 117 ~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 117 MEPRLLIVTDPRTDHQAIREASYVNIPVIALC 148 (249)
T ss_pred CCCCEEEEeCCCcchHHHHHHHHhCCCEEEEe
Confidence 46889998876666778887788888876654
No 220
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=28.01 E-value=1.2e+02 Score=23.83 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=25.3
Q ss_pred CCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 28 PGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 28 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
..+||+|+....-...+.++.|++++.|++.+.
T Consensus 70 ~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~ 102 (260)
T PRK03379 70 ALKPDLVLAWRGGNAERQVDQLASLGIKVMWVD 102 (260)
T ss_pred hcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeC
Confidence 568999987644333678899999999998884
No 221
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=28.01 E-value=31 Score=30.08 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=18.9
Q ss_pred cEEEEcCCCCC---------hHHHHHHHhcCCcEEEecC
Q psy10859 32 QHILCTGNLVT---------KETFDYLKTLASDVHVVRG 61 (224)
Q Consensus 32 D~vi~~GDl~~---------~~~~~~l~~l~~~v~~v~G 61 (224)
-.+.+.||+.+ .++.+.+.+.....+++.|
T Consensus 370 r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G 408 (479)
T PRK14093 370 RRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCG 408 (479)
T ss_pred CEEEEECChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 57888899765 3455555544445556666
No 222
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=27.80 E-value=1.7e+02 Score=18.80 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=28.3
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHH----HHHhcCCcEEEecC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFD----YLKTLASDVHVVRG 61 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~----~l~~l~~~v~~v~G 61 (224)
...+.++..++-+++++.|.-.....+ ..++.+.|++.++.
T Consensus 22 ~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s 66 (95)
T PF01248_consen 22 EVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPS 66 (95)
T ss_dssp HHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESH
T ss_pred HHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECC
Confidence 355566677999999999999833333 33444678877763
No 223
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.79 E-value=78 Score=25.25 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=21.0
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCC
Q psy10859 43 KETFDYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 43 ~~~~~~l~~l~~~v~~v~GNHD~~ 66 (224)
..+++.+++.+.|.+++||=|--.
T Consensus 99 trv~dei~esgipa~liPGlHr~~ 122 (332)
T COG4020 99 TRVYDEISESGIPAYLIPGLHRGL 122 (332)
T ss_pred eehHHHHHhcCCCeeecccccCCC
Confidence 478999999999999999999654
No 224
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=27.57 E-value=1.2e+02 Score=26.18 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=44.0
Q ss_pred HHHHHhhcCCCccEEEEcCCCCC----hHHHHHHHhcCCcEEEecCCCCCCCCCCcceEEEeCCEEEEee
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVT----KETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQFRIGLC 85 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~ 85 (224)
+.+.+.+++.++|.|+++..-.+ .+.++.+++.+.++..+|...|... .......+.+.....+
T Consensus 178 ~~l~~~i~~~~id~ViIa~p~~~~~~~~~ll~~~~~~gv~V~~vP~~~e~~~--~~~~~~~i~~v~~l~~ 245 (445)
T TIGR03025 178 DDLVELVRAHRVDEVIIALPLSEEARILELLLQLRDLGVDVRLVPDLFEFLL--GRLRIEELGGVPLLSL 245 (445)
T ss_pred HHHHHHHHhCCCCEEEEecCcccHHHHHHHHHHHHhcCCEEEEeCchhhhcc--CCcceEEECCEEEEEE
Confidence 35677777889999999987776 3566677777889999999887653 2222233555554433
No 225
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=27.37 E-value=1.7e+02 Score=20.56 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEEeCCeEEEEEEEee--cCceeEE
Q psy10859 174 PGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLI--ADEVTVE 217 (224)
Q Consensus 174 ~Gs~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~ 217 (224)
.|.-...+...+.++...|.-|++.+|++..-.+... .+.++.+
T Consensus 31 dGtY~~~y~~fDd~gwk~f~~iti~dGKiv~~~ydy~~k~G~~Ks~ 76 (147)
T COG4939 31 DGTYQGHYESFDDHGWKAFVTITIQDGKIVACTYDYRDKKGNIKSD 76 (147)
T ss_pred CCceeeeeccccccCccceEEEEEeCCEEEEEEeeeecCCCCcccc
Confidence 3444444445567778999999999999976666663 4444443
No 226
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=27.32 E-value=1.4e+02 Score=23.27 Aligned_cols=34 Identities=12% Similarity=-0.019 Sum_probs=23.6
Q ss_pred hcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEe
Q psy10859 26 LVPGRIQHILCTGNLVTKETFDYLKTLASDVHVV 59 (224)
Q Consensus 26 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v 59 (224)
+...++|.+++.+--.+...++.+++.+.|++++
T Consensus 51 l~~~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~ 84 (269)
T cd06297 51 TLAYLTDGLLLASYDLTERLAERRLPTERPVVLV 84 (269)
T ss_pred HHhcCCCEEEEecCccChHHHHHHhhcCCCEEEE
Confidence 4456788888887444566667777767787776
No 227
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.09 E-value=1.3e+02 Score=19.33 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEecCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGD 62 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~GN 62 (224)
...+.+...++|.|++.+ +....+..|++.+..++...++
T Consensus 52 ~~~~~l~~~~v~~vi~~~--iG~~a~~~l~~~gI~v~~~~~~ 91 (102)
T cd00562 52 LAARLLALEGCDAVLVGG--IGGPAAAKLEAAGIKPIKAAEG 91 (102)
T ss_pred HHHHHHHHCCCcEEEEcc--cCccHHHHHHHcCCEEEEcCCC
Confidence 344455578999999988 7788888898888887766553
No 228
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=26.67 E-value=82 Score=27.49 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=25.3
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcC--CCccEEEEcC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVP--GRIQHILCTG 38 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~--~~~D~vi~~G 38 (224)
|+++.+|.+...- ...+.|.+.+.+ .++|.+++.|
T Consensus 194 RfI~s~D~~n~~l--~~~eef~~~L~ei~~~~D~avlSG 230 (463)
T PRK03979 194 RFIVSSRPEWLRI--EIKDELKEFLPEIGKMVDGAILSG 230 (463)
T ss_pred eEEEecCCCCccc--eecHHHHHHHHhhccCCCEEEEec
Confidence 6888889876432 334567777665 7899999999
No 229
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=26.45 E-value=67 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=16.4
Q ss_pred ccEEEEcCCCCC-hHHHHHHHhcCCcEEEec
Q psy10859 31 IQHILCTGNLVT-KETFDYLKTLASDVHVVR 60 (224)
Q Consensus 31 ~D~vi~~GDl~~-~~~~~~l~~l~~~v~~v~ 60 (224)
-.++|++|| .| ..+++.+++.+.+|.++.
T Consensus 97 d~ivLvSgD-~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGD-SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE----GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEECc-HHHHHHHHHHHHcCCEEEEEE
Confidence 556778888 44 677788887776665554
No 230
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.21 E-value=1.5e+02 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEecCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDFD 64 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~GNHD 64 (224)
...+.+...++|-+|++|--.+....+.+.+.+.|++++-...+
T Consensus 105 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~~~~ 148 (333)
T COG1609 105 EYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDRSPP 148 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEeCCCc
Confidence 34445557899999999933347788888888889988876544
No 231
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=26.09 E-value=57 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=22.1
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcC--CCccEEEEcC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVP--GRIQHILCTG 38 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~--~~~D~vi~~G 38 (224)
||++-+|.+.+.- ...+.|.+.+.+ .++|.+++.|
T Consensus 181 RfI~s~D~~N~~l--~~~e~f~~~l~~~~~~~d~~vlSG 217 (444)
T PF04587_consen 181 RFIVSSDPYNPRL--SILEEFFEALEEIAFKPDLAVLSG 217 (444)
T ss_dssp EEEEEE-SSGGGT--S--HHHHHSHHHHHTT-SEEEEE-
T ss_pred eEEEecCCCCccc--cchHHHHHHHHhhccCCCEEEEec
Confidence 7888899886332 333566676665 7899999999
No 232
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=25.76 E-value=99 Score=24.36 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=20.8
Q ss_pred EEEcCCCCC---------------hHHHHHHHhcCCcEEEecCCCCCCC
Q psy10859 34 ILCTGNLVT---------------KETFDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 34 vi~~GDl~~---------------~~~~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
++++||.+- ...++.+.++...+.+.+| |++..
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~~t~i~pg-H~y~~ 169 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCA-HEYTL 169 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCCCEEEECC-CCChh
Confidence 578888552 2344455556556777788 98863
No 233
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=25.42 E-value=2.3e+02 Score=19.62 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=27.1
Q ss_pred HHHHhhcCCCccEEEEcCCCCChHHHHHH----HhcCCcEEEecCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTKETFDYL----KTLASDVHVVRGD 62 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l----~~l~~~v~~v~GN 62 (224)
...+.+++..+-+||++.|.-..+..+.+ +..+.|++++.-+
T Consensus 37 ~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk 82 (122)
T PRK04175 37 ETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK 82 (122)
T ss_pred HHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH
Confidence 34555667789999999999874443333 3346786555433
No 234
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=25.34 E-value=81 Score=27.41 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=24.1
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcC--CCccEEEEcC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVP--GRIQHILCTG 38 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~--~~~D~vi~~G 38 (224)
|+++.+|.+...- ...+.|.+.+.+ .++|.++++|
T Consensus 196 RfI~s~D~~N~~l--~~~eef~~~l~ei~~~~Dl~vlSG 232 (453)
T PRK14038 196 RFIGAADDYNPNL--YIRPEFRERFEEIAKKAELAIISG 232 (453)
T ss_pred eEEEecCCCCcce--eecHHHHHHHHhhccCCCEEEEEc
Confidence 6888889886432 233456555543 6899999999
No 235
>PRK15447 putative protease; Provisional
Probab=24.97 E-value=1.7e+02 Score=23.80 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=29.4
Q ss_pred HHHHHhhcCCCccEEEEcCCCCC----------hHHHHHHHhcCCcEEE
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVT----------KETFDYLKTLASDVHV 58 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l~~~v~~ 58 (224)
+.|...+..+++|.|++.++.+. .+.++.+.+.+.++++
T Consensus 18 ~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 18 RDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 35777777788999999999865 4666667676777766
No 236
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=24.94 E-value=92 Score=22.70 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.1
Q ss_pred HHhhcCCCccEEEEcCCCCC-h---HHHHHHHhcCCcEEEecC
Q psy10859 23 KKLLVPGRIQHILCTGNLVT-K---ETFDYLKTLASDVHVVRG 61 (224)
Q Consensus 23 ~~~~~~~~~D~vi~~GDl~~-~---~~~~~l~~l~~~v~~v~G 61 (224)
.+++..+++|.+++.-|-.. . .....+.+++.|++++.=
T Consensus 71 ~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN 113 (156)
T PF02421_consen 71 RDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLN 113 (156)
T ss_dssp HHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred HHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 44455678999999999988 2 333445566888876654
No 237
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=24.84 E-value=1.7e+02 Score=22.42 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=25.1
Q ss_pred hcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEe
Q psy10859 26 LVPGRIQHILCTGNLVTKETFDYLKTLASDVHVV 59 (224)
Q Consensus 26 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v 59 (224)
+...++|.+++.+.-.+...++.+++.+.|++++
T Consensus 51 l~~~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 51 LARQKVDGIILLATTITDEHREAIKKLNVPVVVV 84 (259)
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 3457899999987655556667777767788777
No 238
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=24.73 E-value=37 Score=29.37 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=20.1
Q ss_pred cEEEEcCCCCC---------hHHHHHHHhcCCcEEEecC
Q psy10859 32 QHILCTGNLVT---------KETFDYLKTLASDVHVVRG 61 (224)
Q Consensus 32 D~vi~~GDl~~---------~~~~~~l~~l~~~v~~v~G 61 (224)
-.+++.||+.+ .++.+.+.+.+...++..|
T Consensus 354 r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G 392 (453)
T PRK10773 354 YRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVG 392 (453)
T ss_pred CEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 46889999987 3444555555555666667
No 239
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.44 E-value=1.6e+02 Score=21.61 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=23.9
Q ss_pred CCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 28 PGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 28 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
..+||+||..+.. ..+.++.|++++.|++.+.
T Consensus 58 ~l~PDlii~~~~~-~~~~~~~l~~~gi~v~~~~ 89 (195)
T cd01143 58 ALKPDLVIVSSSS-LAELLEKLKDAGIPVVVLP 89 (195)
T ss_pred ccCCCEEEEcCCc-CHHHHHHHHHcCCcEEEeC
Confidence 5689999876532 3457888999888887775
No 240
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=24.25 E-value=2.3e+02 Score=19.02 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=29.4
Q ss_pred HHHHhhcCCCccEEEEcCCCCC---hHHHHHHHhcCCcEEEecCCCCC
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVT---KETFDYLKTLASDVHVVRGDFDE 65 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~~~v~~v~GNHD~ 65 (224)
...+.++..++-+||++-|... +......+..+.|++.. |+-|.
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t~~e 70 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YSKEE 70 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cCHHH
Confidence 4556667778999999999998 33333334446787655 65543
No 241
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=23.99 E-value=3.4e+02 Score=20.87 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=18.0
Q ss_pred EEEEcCCCCC--hHHHHHHHhcCCcEEEecCCCC
Q psy10859 33 HILCTGNLVT--KETFDYLKTLASDVHVVRGDFD 64 (224)
Q Consensus 33 ~vi~~GDl~~--~~~~~~l~~l~~~v~~v~GNHD 64 (224)
.++++||... ....+.+++.+..+.++.+++.
T Consensus 146 ~i~y~gDt~~~~~~~~~~~~~~~~D~li~e~~~~ 179 (238)
T TIGR03307 146 RVAYLTDTAGLPPDTEAFLKNHPLDVLILDCSHP 179 (238)
T ss_pred EEEEEecCCCCCHHHHHHHhcCCCCEEEEeCCcC
Confidence 5666777543 3444555443456666666664
No 242
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=23.94 E-value=98 Score=19.33 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=18.6
Q ss_pred HHHHHHhhhcCCcEEEECCCCCCce
Q psy10859 139 EALALLQRQLDVDILISGHTHKFEA 163 (224)
Q Consensus 139 ~~l~~~~~~~~~~~vi~GH~H~~~~ 163 (224)
+.+.+..++.++++++.||.-....
T Consensus 38 ~~~~~~a~~~~~~~Iv~G~~~~d~~ 62 (86)
T cd01984 38 RILKRLAAEEGADVIILGHNADDVA 62 (86)
T ss_pred HHHHHHHHHcCCCEEEEcCCchhhh
Confidence 3455667788999999999865543
No 243
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.88 E-value=1.3e+02 Score=24.58 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=26.6
Q ss_pred cCCCccEEEEcCCCCC----hHHHHHHHhcCCcEEEec
Q psy10859 27 VPGRIQHILCTGNLVT----KETFDYLKTLASDVHVVR 60 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~----~~~~~~l~~l~~~v~~v~ 60 (224)
...+||+||..+.... .+.++.|++++.|++.+.
T Consensus 88 ~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~ 125 (342)
T cd01139 88 LTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVD 125 (342)
T ss_pred hhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEe
Confidence 3578999998765542 568888999889998886
No 244
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=23.71 E-value=1.9e+02 Score=24.17 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcCCcEEEecCCCCCCC
Q psy10859 22 FKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLASDVHVVRGDFDEGT 67 (224)
Q Consensus 22 l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~v~~v~GNHD~~~ 67 (224)
..++++..-++.|+++-+++. .+.++..++.+..|++++.+|+...
T Consensus 285 V~~Ale~GAVetLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i~Ss~~e~G~ 335 (351)
T TIGR00111 285 VVKAAEYGAIEYLLVTDKVLVQREEIEKLLDSVESMGGKVVILSTEHELGK 335 (351)
T ss_pred HHHHHHcCCceEEEEecchhhhHHHHHHHHHHHHHcCCEEEEEcCCCccHH
Confidence 334444445799999999954 2345555666889999999999864
No 245
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=23.40 E-value=1.9e+02 Score=22.26 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=25.4
Q ss_pred cCCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 27 VPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
...++|.+++.|.......++.+++.+.|++++-
T Consensus 52 ~~~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~~ 85 (268)
T cd06273 52 LERGVDGLALIGLDHSPALLDLLARRGVPYVATW 85 (268)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEc
Confidence 3558999999886555667777777788988773
No 246
>PRK10116 universal stress protein UspC; Provisional
Probab=23.35 E-value=1.9e+02 Score=19.80 Aligned_cols=30 Identities=17% Similarity=0.394 Sum_probs=13.0
Q ss_pred EEEcCCCCChHHHHHHHhcCCcEEEecCCCCC
Q psy10859 34 ILCTGNLVTKETFDYLKTLASDVHVVRGDFDE 65 (224)
Q Consensus 34 vi~~GDl~~~~~~~~l~~l~~~v~~v~GNHD~ 65 (224)
++..|+-. ..+.+..++.+... +|.|+|..
T Consensus 84 ~~~~G~~~-~~I~~~a~~~~~DL-iV~g~~~~ 113 (142)
T PRK10116 84 FIAYGELS-EHILEVCRKHHFDL-VICGNHNH 113 (142)
T ss_pred EEecCCHH-HHHHHHHHHhCCCE-EEEcCCcc
Confidence 33444433 34444444433333 44466643
No 247
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=23.34 E-value=1.5e+02 Score=25.55 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=44.1
Q ss_pred HHHHHhhcCCCccEEEEcCCCCC----hHHHHHHHhcCCcEEEecCCCCCCCCCCcceEEEeCCEEEEee
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVT----KETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQFRIGLC 85 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~ 85 (224)
+.+.+.+++.++|.|+++-.-.+ .+.++.+++.+.++..+|+-.|... .......+++.....+
T Consensus 181 ~dl~~~i~~~~vd~ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP~~~e~~~--~~~~i~~l~g~p~l~v 248 (451)
T TIGR03023 181 DDLEELIREGEVDEVYIALPLAAEDRILELLDALEDLTVDVRLVPDLFDFAL--LRPRIEEIGGLPVISL 248 (451)
T ss_pred HHHHHHHHhcCCCEEEEeeCcccHHHHHHHHHHHHhcCCEEEEeCchhhhcc--CCCceEEECCEEEEEE
Confidence 45777777889999999988776 4556666677889999999887653 2222334555554443
No 248
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.31 E-value=60 Score=24.74 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=17.2
Q ss_pred ChHHHHHhhcCCCccEEEEcC
Q psy10859 18 LPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 18 ~~~~l~~~~~~~~~D~vi~~G 38 (224)
+.+++.+.+...++|+|+++|
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcc
Confidence 345677777888999999999
No 249
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=23.03 E-value=1e+02 Score=26.84 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=24.3
Q ss_pred eEEEEeeccCCCCCCCChHHHHHhhcCC--CccEEEEcC
Q psy10859 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPG--RIQHILCTG 38 (224)
Q Consensus 2 ki~~isDiH~~~~~~~~~~~l~~~~~~~--~~D~vi~~G 38 (224)
|+++.+|.+...- ...+.|.+.+.+. ++|.+++.|
T Consensus 182 RfI~s~D~~N~~l--~i~e~f~~~l~e~~~~~D~avlSG 218 (453)
T PRK14039 182 RFIATFDHLNFRL--FINPAFEQYALEHAGEMDGALISG 218 (453)
T ss_pred eEEEecCCCCccc--eecHHHHHHHHhhccCCCEEEEec
Confidence 6888889776432 2334566666533 799999999
No 250
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.93 E-value=1.8e+02 Score=18.83 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=20.7
Q ss_pred HHHhhcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 22 FKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 22 l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
+.+.+...++|.|++.+ +....+..|++.+..++...
T Consensus 55 ~~~~l~~~~v~~vi~~~--iG~~~~~~l~~~gI~v~~~~ 91 (103)
T cd00851 55 AAEFLADEGVDVVIVGG--IGPRALNKLRNAGIKVYKGA 91 (103)
T ss_pred HHHHHHHcCCCEEEeCC--CCcCHHHHHHHCCCEEEEcC
Confidence 34444446677776655 44556666666555554443
No 251
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=22.92 E-value=1.9e+02 Score=24.41 Aligned_cols=36 Identities=6% Similarity=-0.145 Sum_probs=25.8
Q ss_pred HHhhcCCCccEEEEcCCCCC--hHHHHHHHhcCCcEEEe
Q psy10859 23 KKLLVPGRIQHILCTGNLVT--KETFDYLKTLASDVHVV 59 (224)
Q Consensus 23 ~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~v~~v 59 (224)
.+++++.+||.|+..| -.+ .......+.++.|+++.
T Consensus 82 ~~~l~~~kPd~vi~~g-~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 82 VQLAKQAKPDLLVGID-APDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHhcCCCEEEEeC-CCCccHHHHHHHhhCCCCEEEE
Confidence 4456688999999999 566 33444566668898875
No 252
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.78 E-value=1.9e+02 Score=20.30 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCccEEEEcCCCCC-----hHHHHHHHhcC--CcEEEecCC
Q psy10859 20 AKFKKLLVPGRIQHILCTGNLVT-----KETFDYLKTLA--SDVHVVRGD 62 (224)
Q Consensus 20 ~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~v~~v~GN 62 (224)
+.+.+.+.++++|+|.+..=+.. +++++.|++.+ ...+++-|+
T Consensus 40 e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 40 EEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred HHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECC
Confidence 45666666778888888774444 67777777653 233455554
No 253
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.54 E-value=2.1e+02 Score=21.96 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=24.4
Q ss_pred hcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 26 LVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 26 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
+...++|.+|+.+.-.+...++.+.+.+.|++++-
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~~ 85 (265)
T cd06299 51 LLSQRVDGIIVVPHEQSAEQLEDLLKRGIPVVFVD 85 (265)
T ss_pred HHhcCCCEEEEcCCCCChHHHHHHHhCCCCEEEEe
Confidence 34668999998875434455677777778887763
No 254
>PLN02398 hydroxyacylglutathione hydrolase
Probab=22.42 E-value=1.5e+02 Score=24.66 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=20.1
Q ss_pred EEEEcCCCCC---------------hHHHHHHHhcCCcEEEecCCCCCC
Q psy10859 33 HILCTGNLVT---------------KETFDYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 33 ~vi~~GDl~~---------------~~~~~~l~~l~~~v~~v~GNHD~~ 66 (224)
-++++||.+- ...++.|.++...+.+.+| |++.
T Consensus 200 ~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~VypG-Hgyt 247 (329)
T PLN02398 200 GAIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYCG-HEYT 247 (329)
T ss_pred CEEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCCh
Confidence 3678888763 2344455555445556677 8875
No 255
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.33 E-value=1.1e+02 Score=20.50 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=11.1
Q ss_pred HHHHhhcCCCccEEEEcC
Q psy10859 21 KFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~G 38 (224)
.+.+.+.+.++|.|.+..
T Consensus 42 ~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 42 ELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEc
Confidence 455555556777777765
No 256
>PRK07714 hypothetical protein; Provisional
Probab=22.18 E-value=2.4e+02 Score=18.58 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=25.8
Q ss_pred HHHHhhcCCCccEEEEcCCCCCh---HHHHHHHhcCCcEEEe
Q psy10859 21 KFKKLLVPGRIQHILCTGNLVTK---ETFDYLKTLASDVHVV 59 (224)
Q Consensus 21 ~l~~~~~~~~~D~vi~~GDl~~~---~~~~~l~~l~~~v~~v 59 (224)
...+.+++.++-+||++.|.-+. .+.......+.|++.+
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 45566667789999999999983 2333333446787655
No 257
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.15 E-value=1.1e+02 Score=24.43 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=25.8
Q ss_pred HHhhhcCCcEEEECCCCCCceEEE---------------cCEEEEcCCCCC
Q psy10859 143 LLQRQLDVDILISGHTHKFEAYEH---------------ENKFYINPGSAT 178 (224)
Q Consensus 143 ~~~~~~~~~~vi~GH~H~~~~~~~---------------~~~~~in~Gs~~ 178 (224)
..+++.++++++.||+-+...... +=+.++|.|-.-
T Consensus 82 ~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl 132 (251)
T COG0149 82 EMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETL 132 (251)
T ss_pred HHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCH
Confidence 445678999999999998755322 235777877655
No 258
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=22.09 E-value=2e+02 Score=23.71 Aligned_cols=42 Identities=7% Similarity=-0.104 Sum_probs=28.6
Q ss_pred HHHhhcCCCccEEEEcCCCCC--hHHHHHHHhcCCcEEEecCCCC
Q psy10859 22 FKKLLVPGRIQHILCTGNLVT--KETFDYLKTLASDVHVVRGDFD 64 (224)
Q Consensus 22 l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~v~~v~GNHD 64 (224)
+.+++++.+||.|+..| ..+ .......+..++|+++..+|+.
T Consensus 77 ~~~~l~~~kPdivi~~~-~~~~~~~~a~~a~~~~ip~i~~~~~~~ 120 (380)
T PRK00025 77 LKRRLLAEPPDVFIGID-APDFNLRLEKKLRKAGIPTIHYVSPSV 120 (380)
T ss_pred HHHHHHHcCCCEEEEeC-CCCCCHHHHHHHHHCCCCEEEEeCCch
Confidence 44556678999999988 433 3444445556789888877764
No 259
>KOG3076|consensus
Probab=21.65 E-value=65 Score=24.41 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=17.0
Q ss_pred ChHHHHHhhcCCCccEEEEcC
Q psy10859 18 LPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 18 ~~~~l~~~~~~~~~D~vi~~G 38 (224)
+.+++.+.+.+.++|+|+++|
T Consensus 75 ~d~eL~~~l~e~~~d~v~lAG 95 (206)
T KOG3076|consen 75 YDNELAEVLLELGTDLVCLAG 95 (206)
T ss_pred CcHHHHHHHHHhCCCEEEehh
Confidence 345777777778999999999
No 260
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=21.57 E-value=3.9e+02 Score=20.82 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=33.5
Q ss_pred CeEEEEeeccCCCCC--CCChHHHHHh---hcCCCccEEEEcCCCCChHHHHHHHhcCCc
Q psy10859 1 MLVLVLGDLHIPHRT--SGLPAKFKKL---LVPGRIQHILCTGNLVTKETFDYLKTLASD 55 (224)
Q Consensus 1 mki~~isDiH~~~~~--~~~~~~l~~~---~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~ 55 (224)
|.=++++|+.+.--. ........++ +++.++.+++.+|=-. ..+.+.+++++..
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~-~~~~~~~~~l~~~ 60 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPL-PDVLSILEELGLD 60 (264)
T ss_pred CeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCCh-HHHHHHHHHcCCC
Confidence 344778999973211 1233333333 3478999999999776 5666667666543
No 261
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.42 E-value=74 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=16.6
Q ss_pred CChHHHHHhhcCCCccEEEEcC
Q psy10859 17 GLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 17 ~~~~~l~~~~~~~~~D~vi~~G 38 (224)
+.++.+.+++++..||.|+++|
T Consensus 140 eqp~~i~~Ll~~~~PDIlViTG 161 (283)
T TIGR02855 140 EMPEKVLDLIEEVRPDILVITG 161 (283)
T ss_pred hchHHHHHHHHHhCCCEEEEeC
Confidence 4456677777778888888887
No 262
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=21.36 E-value=1.7e+02 Score=21.89 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCcEEEecC
Q psy10859 44 ETFDYLKTLASDVHVVRG 61 (224)
Q Consensus 44 ~~~~~l~~l~~~v~~v~G 61 (224)
+..+.|++.+..-++|.|
T Consensus 128 ~L~~~L~~~~i~~lii~G 145 (196)
T cd01011 128 GLAEYLRERGIDRVDVVG 145 (196)
T ss_pred hHHHHHHHCCCCEEEEEE
Confidence 444555555555455555
No 263
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=21.21 E-value=2.4e+02 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=21.3
Q ss_pred CChHHHHHhhcCCCccEEEEcCCCCC
Q psy10859 17 GLPAKFKKLLVPGRIQHILCTGNLVT 42 (224)
Q Consensus 17 ~~~~~l~~~~~~~~~D~vi~~GDl~~ 42 (224)
.+...|.+++...+..++++.-|.+.
T Consensus 25 ~La~rLkeil~~~~~~~lVclpd~F~ 50 (225)
T PF08759_consen 25 ELAKRLKEILRSSNENLLVCLPDVFH 50 (225)
T ss_pred HHHHHHHHHHhCCCCCEEEECCcccC
Confidence 34457888888888999999999985
No 264
>KOG3873|consensus
Probab=20.83 E-value=78 Score=26.63 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=15.8
Q ss_pred HHHhhc--CCCccEEEEcCCCCC
Q psy10859 22 FKKLLV--PGRIQHILCTGNLVT 42 (224)
Q Consensus 22 l~~~~~--~~~~D~vi~~GDl~~ 42 (224)
+.++++ .++.|.||.+||+--
T Consensus 159 laqfi~~t~q~~~vVI~~GDLN~ 181 (422)
T KOG3873|consen 159 LAQFIRATRQNADVVILAGDLNM 181 (422)
T ss_pred HHHHHHHHhcCCcEEEEecCCCC
Confidence 344443 678999999999974
No 265
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.78 E-value=2.4e+02 Score=21.54 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=26.1
Q ss_pred hcCCCccEEEEcCCCCChHHHHHHHhcCCcEEEecCCC
Q psy10859 26 LVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDF 63 (224)
Q Consensus 26 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~GNH 63 (224)
+...++|.+++.+--.+...++.+.+.+.|++.+ ++.
T Consensus 51 l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~-~~~ 87 (268)
T cd01575 51 LLSRRPAGLILTGLEHTERTRQLLRAAGIPVVEI-MDL 87 (268)
T ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHhcCCCEEEE-ecC
Confidence 3457899999988444456677777778898877 444
No 266
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.74 E-value=2.1e+02 Score=21.91 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=23.5
Q ss_pred cCCCccEEEEcCCCCChHHHHHHHhcCCcEEEec
Q psy10859 27 VPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60 (224)
Q Consensus 27 ~~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v~ 60 (224)
...+||+||...-......++.|++++.++++..
T Consensus 54 ~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~ 87 (245)
T cd01144 54 LALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSE 87 (245)
T ss_pred HhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeC
Confidence 3568999987542222445888999888877764
No 267
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=20.64 E-value=2.9e+02 Score=18.89 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=23.5
Q ss_pred CCCccEEEE-cCCCCC---hHHHHHHHhcCCcEEEecCCC
Q psy10859 28 PGRIQHILC-TGNLVT---KETFDYLKTLASDVHVVRGDF 63 (224)
Q Consensus 28 ~~~~D~vi~-~GDl~~---~~~~~~l~~l~~~v~~v~GNH 63 (224)
+.++-.+.+ .|+.++ .++++..++.+.|++.+|-+.
T Consensus 70 ~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~~ 109 (123)
T PF07905_consen 70 EKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWEV 109 (123)
T ss_pred HCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCCC
Confidence 445444444 665666 677777887778888777643
No 268
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.59 E-value=1.6e+02 Score=24.33 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHHHhhcCCCccEE---EEcCCCCC--------------------------hHHHHHHHhcCCcEEEecCCCCCC
Q psy10859 21 KFKKLLVPGRIQHI---LCTGNLVT--------------------------KETFDYLKTLASDVHVVRGDFDEG 66 (224)
Q Consensus 21 ~l~~~~~~~~~D~v---i~~GDl~~--------------------------~~~~~~l~~l~~~v~~v~GNHD~~ 66 (224)
.+.+.+..+++|.+ +..||=++ ..+++.+++.+.|.++|||=|--.
T Consensus 41 ~l~~~~~~~~i~lia~~YsMGDgis~i~~i~~v~nrGv~s~eGaG~~~GgGt~v~d~i~~sgipav~iPGlH~~~ 115 (326)
T TIGR03281 41 ELEDRVALEEIDLIALTYSMGDGISKITPIERVKNRGLQSIEGAGKKTGGGTRVYDEIKESGIPAVLIPGLHRGS 115 (326)
T ss_pred hhhhcCCccceeEEEEeecccCChhhcccHhHhccCceecccCCcceecCccchHHHHHhcCCCEEEcccccCCC
Confidence 44555555667765 45688775 479999999999999999999644
No 269
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=20.54 E-value=59 Score=26.24 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=15.0
Q ss_pred CChHHHHHhhcCCCccEEEEcC
Q psy10859 17 GLPAKFKKLLVPGRIQHILCTG 38 (224)
Q Consensus 17 ~~~~~l~~~~~~~~~D~vi~~G 38 (224)
+.++.+.+++.+..||.|+++|
T Consensus 141 eqp~~i~~Ll~~~~PDIlViTG 162 (287)
T PF05582_consen 141 EQPEKIYRLLEEYRPDILVITG 162 (287)
T ss_pred HhhHHHHHHHHHcCCCEEEEeC
Confidence 3445666666677788888777
No 270
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=20.09 E-value=3.3e+02 Score=23.15 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=33.7
Q ss_pred eCCeEEEeeccCC-CC--CCCCHHHHHHHhhhcCCcEEEECCCCCCceEE-E-cCEEEEc
Q psy10859 119 VGQFRIGLCHGHD-II--PWGDPEALALLQRQLDVDILISGHTHKFEAYE-H-ENKFYIN 173 (224)
Q Consensus 119 ~~~~~i~~~H~~~-~~--~~~~~~~l~~~~~~~~~~~vi~GH~H~~~~~~-~-~~~~~in 173 (224)
..+-.|+..|..- +. +......+..-+...++++++.+|.|.....+ + +++.+++
T Consensus 223 ~adlviv~~HwG~ey~~~p~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~~~~~I~Y 282 (372)
T COG2843 223 GADLVIVQPHWGVEYAYEPAAGQRALARRLIDAGADIIVGHHPHVLQPIEIYIQGKPILY 282 (372)
T ss_pred cCCEEEEeccccccccCCCcHHHHHHHHHHHhcCcCeEecCCCCcCcceEEecCCcEEEE
Confidence 3556677888532 21 22223445555556899999999999987553 4 3554443
No 271
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.02 E-value=2.1e+02 Score=21.90 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=23.6
Q ss_pred CCCccEEEEcCCCCChHHHHHHHhcCCcEEEe
Q psy10859 28 PGRIQHILCTGNLVTKETFDYLKTLASDVHVV 59 (224)
Q Consensus 28 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~v~~v 59 (224)
..++|.+++.+...+...++.+.+.+.|++++
T Consensus 53 ~~~vdgiii~~~~~~~~~~~~l~~~~ipvV~~ 84 (268)
T cd06298 53 AKQVDGIIFMGGKISEEHREEFKRSPTPVVLA 84 (268)
T ss_pred HhcCCEEEEeCCCCcHHHHHHHhcCCCCEEEE
Confidence 56899999987554556777777667888666
Done!