RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10859
(224 letters)
>gnl|CDD|163637 cd07394, MPP_Vps29, Homo sapiens Vps29 and related proteins,
metallophosphatase domain. Vps29 (vacuolar sorting
protein 29), also known as vacuolar membrane protein
Pep11, is a subunit of the retromer complex which is
responsible for the retrieval of mannose-6-phosphate
receptors (MPRs) from the endosomes for retrograde
transport back to the Golgi. Vps29 has a phosphoesterase
fold that acts as a protein interaction scaffold for
retromer complex assembly as well as a phosphatase with
specificity for the cytoplasmic tail of the MPR. The
retromer includes the following 5 subunits: Vps35,
Vps26, Vps29, and a dimer of the sorting nexins Vps5
(Snx1), and Vps17 (Snx2). Vps29 belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 178
Score = 329 bits (845), Expect = e-116
Identities = 140/220 (63%), Positives = 160/220 (72%), Gaps = 42/220 (19%)
Query: 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRG 61
LVLV+GDLHIPHR S LPAKFKKLLVPG+IQH+LCTGNL +KET+DYLKT+A DVH+VRG
Sbjct: 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSKETYDYLKTIAPDVHIVRG 60
Query: 62 DFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQ 121
DFDE +YPE KV+TVGQF+IGL HGH ++PWGDP++LA LQRQLD
Sbjct: 61 DFDENLNYPETKVITVGQFKIGLIHGHQVVPWGDPDSLAALQRQLD-------------- 106
Query: 122 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAF 181
VDILISGHTHKFEA+EHE KF+INPGSATGAF
Sbjct: 107 ----------------------------VDILISGHTHKFEAFEHEGKFFINPGSATGAF 138
Query: 182 NPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDY 221
+PL+P V PSFVLMDIQ S VVTYVYQLI EV VE+I+Y
Sbjct: 139 SPLDPNVIPSFVLMDIQGSKVVTYVYQLIDGEVKVEKIEY 178
>gnl|CDD|223695 COG0622, COG0622, Predicted phosphoesterase [General function
prediction only].
Length = 172
Score = 112 bits (283), Expect = 2e-31
Identities = 54/217 (24%), Positives = 84/217 (38%), Gaps = 47/217 (21%)
Query: 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYL-KTLASDVHVV 59
M +LV+ D H P R K K+ ++ ++ G+ + T D L LA+ + V
Sbjct: 2 MKILVISDTHGPLR---AIEKALKIFNLEKVDAVIHAGDSTSPFTLDALEGGLAAKLIAV 58
Query: 60 RGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTV 119
RG+ D ++D PE+ V+ V
Sbjct: 59 RGNCD---------------------------------------GEVDQEELPEELVLEV 79
Query: 120 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATG 179
G +I L HGH D L L ++L D+LI GHTHK A + +NPGS +G
Sbjct: 80 GGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAEKVGGILLVNPGSVSG 139
Query: 180 AFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTV 216
S+ ++D+ + V + EVT+
Sbjct: 140 PRGGNP----ASYAILDVDNLEVEVLFLERDRAEVTI 172
>gnl|CDD|232794 TIGR00040, yfcE, phosphoesterase, MJ0936 family. Members of this
largely uncharacterized family share a motif
approximating DXH(X25)GDXXD(X25)GNHD as found in several
phosphoesterases, including the nucleases SbcD and
Mre11, and a family of uncharacterized archaeal putative
phosphoesterases described by TIGR00024. In this family,
the His residue in GNHD portion of the motif is not
conserved. The member MJ0936, one of two from
Methanococcus jannaschii, was shown (PMID:15128743) to
act on model phosphodiesterase substrates; a divalent
cation was required [Unknown function, Enzymes of
unknown specificity].
Length = 158
Score = 103 bits (258), Expect = 8e-28
Identities = 52/186 (27%), Positives = 71/186 (38%), Gaps = 43/186 (23%)
Query: 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60
M +LV+ D H P R + LP + L + ++ G+L + + LA+ V VR
Sbjct: 1 MKILVISDTHGPLRATELPVELFNLES--NVDLVIHAGDLTSPFVLKEFEDLAAKVIAVR 58
Query: 61 GDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
G+ D R L PE+++
Sbjct: 59 GNNDG--------------ERDEL---------------------------PEEEIFEAE 77
Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
GL HG + P GD L L ++L VD+LI GHTH A E INPGS TG
Sbjct: 78 GIDFGLVHGDLVYPRGDLLVLEYLAKELGVDVLIFGHTHIPVAEELRGILLINPGSLTGP 137
Query: 181 FNPLEP 186
N P
Sbjct: 138 RNGNTP 143
>gnl|CDD|221807 pfam12850, Metallophos_2, Calcineurin-like phosphoesterase
superfamily domain. Members of this family are part of
the Calcineurin-like phosphoesterase superfamily.
Length = 146
Score = 95.4 bits (238), Expect = 6e-25
Identities = 42/200 (21%), Positives = 66/200 (33%), Gaps = 56/200 (28%)
Query: 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVT-KETFDYLKTLASDVHVV 59
M + ++ D H L A + L + I+ G+LV E D L + V+ V
Sbjct: 1 MKIAIISDTHGNLDA--LEAALEDL---KGVDLIIHAGDLVGPNEVLDLLADI--PVYAV 53
Query: 60 RGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTV 119
RG+ D PE+ V+T+G FRI + HGH L
Sbjct: 54 RGNNDGDEDLPEELVLTLGGFRILVVHGHPYGVKHGLAELLA------------------ 95
Query: 120 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATG 179
++ D++ GHTH + +NPGS G
Sbjct: 96 --------------------------KEGGADVVFFGHTHVPGVEKRGGTLLVNPGSVGG 129
Query: 180 AFNPLEPKVNPSFVLMDIQS 199
++ L+D+
Sbjct: 130 PRGGDP----ATYALLDVDD 145
>gnl|CDD|163617 cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins,
metallophosphatase domain. YfcE is a
manganase-dependent metallophosphatase, found in
bacteria and archaea, that cleaves bis-p-nitrophenyl
phosphate, thymidine 5'-monophosphate-p-nitrophenyl
ester, and p-nitrophenyl phosphorylcholine, but is
unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic
phosphodiesters, and various phosphomonoesters,
including p-nitrophenyl phosphate. This family also
includes the Bacilus subtilis YsnB and Methanococcus
jannaschii MJ0936 proteins. This domain family belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 155
Score = 80.0 bits (198), Expect = 5e-19
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 107 DGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEH 166
D PE+ V+ +G RI L HGH + L L ++ D+++ GHTH +
Sbjct: 61 DFPILPEEAVLEIGGKRIFLTHGHLYGVKNGLDRLYLA-KEGGADVVLYGHTHIPVIEKI 119
Query: 167 ENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYV 206
+NPGS + P++ +++I V +
Sbjct: 120 GGVLLLNPGSLSLPRGGGP----PTYAILEIDDKGEVEII 155
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 57.1 bits (137), Expect = 3e-10
Identities = 42/184 (22%), Positives = 61/184 (33%), Gaps = 25/184 (13%)
Query: 3 VLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLV---------TKETFDYLKTLA 53
+LV+GDLH L +LL + +L G+LV F
Sbjct: 2 ILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKAP 61
Query: 54 SDVHVVRG--DFDEGTSYPEKKV------VTVGQFRIGLCHGHDIIPWGDPEALALLQRQ 105
V++VRG DFD G S + +G + I L +
Sbjct: 62 GPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVWE 121
Query: 106 LDGTSYPEKKVVTVGQFRIGLCHGH--------DIIPWGDPEALALLQRQLDVDILISGH 157
+ + +I L HG D I EAL L + VD+++ GH
Sbjct: 122 EFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDIYLFGEEALEDLLKDNGVDLVLRGH 181
Query: 158 THKF 161
TH
Sbjct: 182 THVP 185
>gnl|CDD|181869 PRK09453, PRK09453, phosphodiesterase; Provisional.
Length = 182
Score = 47.2 bits (113), Expect = 8e-07
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 117 VTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 176
V + R+ L HGH PE L L D D+L+ GHTH A + NPGS
Sbjct: 93 VLLEGKRLFLTHGHLY----GPENLPALH---DGDVLVYGHTHIPVAEKQGGIILFNPGS 145
Query: 177 AT 178
+
Sbjct: 146 VS 147
>gnl|CDD|163641 cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related
proteins, metallophosphatase domain. YbbF/LpxH is an
Escherichia coli UDP-2,3-diacylglucosamine hydrolase
thought to catalyze the fourth step of lipid A
biosynthesis, in which a precursor
UDP-2,3-diacylglucosamine is hydrolyzed to yield
2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 217
Score = 42.4 bits (100), Expect = 6e-05
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 138 PEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 176
EA+A L R+ VD +I GHTH+ +E + K YIN G
Sbjct: 178 EEAVARLARRKGVDGVICGHTHRPALHELDGKLYINLGD 216
>gnl|CDD|225460 COG2908, COG2908, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 237
Score = 36.1 bits (84), Expect = 0.007
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 138 PEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 176
P A+A R+ VD +I GHTH+ + YIN G
Sbjct: 176 PAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGD 214
>gnl|CDD|163628 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain. YkuE is an
uncharacterized Bacillus subtilis protein with a
C-terminal metallophosphatase domain and an N-terminal
twin-arginine (RR) motif. An RR-signal peptide derived
from the Bacillus subtilis YkuE protein can direct
Tat-dependent secretion of agarase in Streptomyces
lividans. This is an indication that YkuE is transported
by the Bacillus subtilis Tat (Twin-arginine
translocation) pathway machinery. YkuE belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 35.7 bits (83), Expect = 0.009
Identities = 39/186 (20%), Positives = 58/186 (31%), Gaps = 54/186 (29%)
Query: 3 VLVLGDLHIPHRTSGLPAKFKKLLVPGRIQH----ILCTGNLVTKET------FDYLKTL 52
+ L DLH+ S + + LV ++ TG+LV + LK L
Sbjct: 4 IAHLSDLHLGPFVS---RERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKL 60
Query: 53 ASD--VHVVRG--DFDEGTSYP---------------EKKVVTVGQFRIGLCHGHDIIPW 93
+ V+ V G D+ G E ++VG IG+ D +
Sbjct: 61 KAPLGVYAVLGNHDYYSGDEENWIEALESAGITVLRNESVEISVGGATIGIAGVDDGLGR 120
Query: 94 GDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDIL 153
AL K + I L H P+ VD+
Sbjct: 121 RPDLEKAL-------------KGLDEDDPNILLAH--------QPDTAEEAAA-WGVDLQ 158
Query: 154 ISGHTH 159
+SGHTH
Sbjct: 159 LSGHTH 164
>gnl|CDD|163645 cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related
proteins, metallophosphatase domain. GpdQ
(glycerophosphodiesterase Q, also known as Rv0805 in
Mycobacterium tuberculosis) is a binuclear
metallophosphoesterase from Enterobacter aerogenes that
catalyzes the hydrolysis of mono-, di-, and triester
substrates, including some organophosphate pesticides
and products of the degradation of nerve agents. The
GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide
phosphodiesterase activity. GpdQ and Rv0805 belong to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 240
Score = 34.5 bits (80), Expect = 0.023
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 39/163 (23%)
Query: 28 PGRIQHILCTGNLV---TKETFDYLKTLASD----VHVVRGDFDE------------GTS 68
R +L TG+L + E+++ L+ L + V+++ G+ D+
Sbjct: 38 HPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNHDDRAAMRAVFPELPPAP 97
Query: 69 YPEKKVVTVGQFRI--------GLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
+ VV +G +R+ G G L L+ L P+K +
Sbjct: 98 GFVQYVVDLGGWRLILLDSSVPGQHGGEL-----CAAQLDWLEAALA--EAPDKPTLVFL 150
Query: 121 Q---FRIGLCHGHDIIPWGDPEAL-ALLQRQLDVDILISGHTH 159
F +G D I + EAL A+L R +V ++ GH H
Sbjct: 151 HHPPFPVG-IAWMDAIGLRNAEALAAVLARHPNVRAILCGHVH 192
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 32.7 bits (74), Expect = 0.059
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 135 WGDPEALALLQRQLDVDILISGHTHKFEAYEH--ENKFYINPG 175
EAL L + VD+++SGHTH +E E YINPG
Sbjct: 89 DPGSEALLELLEKYGVDLVLSGHTHVYERREPDGGGTLYINPG 131
>gnl|CDD|163653 cd07410, MPP_CpdB_N, Escherichia coli CpdB and related proteins,
N-terminal metallophosphatase domain. CpdB is a
bacterial periplasmic protein with an N-terminal
metallophosphatase domain and a C-terminal
3'-nucleotidase domain. This alignment model represents
the N-terminal metallophosphatase domain, which has
2',3'-cyclic phosphodiesterase activity, hydrolyzing the
2',3'-cyclic phosphates of adenosine, guanosine,
cytosine and uridine to yield nucleoside and phosphate.
CpdB also hydrolyzes the chromogenic substrates
p-nitrophenyl phosphate (PNPP), bis(PNPP) and
p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought
to play a scavenging role during RNA hydrolysis by
converting the non-transportable nucleotides produced by
RNaseI to nucleosides which can easily enter a cell for
use as a carbon source. This family also includes YfkN,
a Bacillus subtilis nucleotide phosphoesterase with two
copies of each of the metallophosphatase and
3'-nucleotidase domains. The N-terminal
metallophosphatase domain belongs to a large superfamily
of distantly related metallophosphatases (MPPs) that
includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA
lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 277
Score = 31.8 bits (73), Expect = 0.20
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 124 IGLCHG---HDIIPWGDPE--ALALLQRQLDVDILISGHTHK 160
+ L HG D+ E A L + +D +++GH H+
Sbjct: 188 VVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILTGHQHR 229
>gnl|CDD|152302 pfam11866, DUF3386, Protein of unknown function (DUF3386). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 220 amino acids in
length.
Length = 214
Score = 31.1 bits (71), Expect = 0.27
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 110 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 169
++ + GQFR+G ++ D E L + QL ++ I FE +N
Sbjct: 33 TWSDGDKSVEGQFRVGADLKAKVLGIEDEEVLKAIYSQLW-EVAIHRVRRSFEETHGKNT 91
Query: 170 FYINPGSATGA 180
F + A+GA
Sbjct: 92 FTLGETDASGA 102
>gnl|CDD|224326 COG1408, COG1408, Predicted phosphohydrolases [General function
prediction only].
Length = 284
Score = 31.6 bits (72), Expect = 0.29
Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 31/168 (18%)
Query: 2 LVLVLGDL----HIPHRTSGLPAKFKKLLVPGRIQHILCTGN---LVTKETFDYLKTLAS 54
L+++ GD P + L KL P + GN V + L
Sbjct: 76 LIVLTGDYVDGDRPPG-VAALALFLAKLKAPLGV--FAVLGNHDYGVDRSNVYIGDLLEE 132
Query: 55 DVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPE- 113
VV + + + + + +G G D+ G + LA L
Sbjct: 133 LGRVVLRN---EIAVID---LLALRIEVG---GLDLYLAGVEDILAGLPLAPFTIGLDIA 183
Query: 114 --KKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTH 159
K + I L H DII L R VD+++SGHTH
Sbjct: 184 EALKQLDEDLPGILLSHEPDII---------LQLRLYGVDLVLSGHTH 222
>gnl|CDD|163655 cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and
related proteins, N-terminal metallophosphatase domain.
YhcR is a Bacillus subtilis sugar-nonspecific
endonuclease. It cleaves endonucleolytically to yield
nucleotide 3'-monophosphate products, similar to
Staphylococcus aureus micrococcal nuclease. YhcR appears
to be located in the cell wall, and is thought to be a
substrate for a Bacillus subtilis sortase. YhcR is the
major calcium-activated nuclease of B. subtilis. The
N-terminal metallophosphatase domain belongs to a large
superfamily of distantly related metallophosphatases
(MPPs) that includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 288
Score = 30.0 bits (68), Expect = 0.83
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 149 DVDILISGHTHKFEAYEHENK 169
DVD++ +GHTH+
Sbjct: 229 DVDVVFAGHTHQAYNCTVPAG 249
>gnl|CDD|235420 PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase;
Provisional.
Length = 241
Score = 29.8 bits (68), Expect = 0.83
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 138 PEALALLQRQLDVDILISGHTHK 160
PEA+A L + VD LI GHTH+
Sbjct: 176 PEAVAALMEKHGVDTLIHGHTHR 198
>gnl|CDD|163639 cd07396, MPP_Nbla03831, Homo sapiens Nbla03831 and related
proteins, metallophosphatase domain. Nbla03831 (also
known as LOC56985) is an uncharacterized Homo sapiens
protein with a domain that belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 267
Score = 30.0 bits (68), Expect = 0.98
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 96 PEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIP----WGDPEALALLQRQLDVD 151
E L L+ +L +KV+ F + H P W E L++L+ V
Sbjct: 162 EEQLQWLRNELQEADANGEKVIIFSHFPL---HPESTSPHGLLWNHEEVLSILRAYGCVK 218
Query: 152 ILISGHTHK 160
ISGH H+
Sbjct: 219 ACISGHDHE 227
>gnl|CDD|163640 cd07397, MPP_DevT, Myxococcus xanthus DevT and related proteins,
metallophosphatase domain. DevT is a component in the
C-signal response pathway in Myxococcus xanthus that
stimulates the developmentally regulated expression of
the FruA response regulator protein and is required for
methylation of FrzCD during fruiting body formation.
DevT mutants having an in-frame deletion in the devT
gene, display delayed aggregation and a cell autonomous
sporulation defect. DevT belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 238
Score = 29.6 bits (67), Expect = 1.00
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 135 WGDP---EALALLQRQLDVDILISGHTHK 160
WGDP A++ +Q+ V +++ GH H
Sbjct: 179 WGDPDLALAISQIQQGRQVPLVVFGHMHH 207
>gnl|CDD|200419 TIGR04168, TIGR04168, TIGR04168 family protein. Members of this
uncharacterized protein family are restricted, in 49 of
50 genomes, to organisms with a family TIGR04167 radical
SAM protein, which occasionally is a selenoprotein.
Length = 269
Score = 29.2 bits (66), Expect = 1.5
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 135 WGDP---EALALLQRQLDVDILISGHTH 159
WGDP A+A +++ + +++ GH H
Sbjct: 167 WGDPDLALAIAQIRKLKQIPLVVFGHMH 194
>gnl|CDD|215511 PLN02949, PLN02949, transferase, transferring glycosyl groups.
Length = 463
Score = 28.9 bits (65), Expect = 2.3
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 71 EKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFR 123
+++V QFR H + EA AL +LD P K+ VG R
Sbjct: 268 PPYIISVAQFRPEKAHALQL------EAFALALEKLD-ADVPRPKLQFVGSCR 313
>gnl|CDD|238152 cd00248, Mth938-like, Mth938-like domain. The members of this
family include: Mth938, 2P1, Xcr35, Rpa2829, and several
uncharacterized sequences. Mth938 is a hypothetical
protein encoded by the Methanobacterium
thermoautotrophicum (Mth) genome. This protein
crystallizes as a dimer, although it is monomeric in
solution, with one disulfide bond in each monomer. 2P1
is a partially characterized nuclear protein which is
homologous to E3-3 from rat and known to be alternately
spliced. Xcr35 and Rpa2829 are hypothetical proteins of
unknown function from the Xanthomonas campestris and
Rhodopseudomonas palustris genomes, respectively, for
which the crystal structures have been determined.
Length = 109
Score = 27.6 bits (62), Expect = 2.4
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 17/60 (28%)
Query: 120 GQFRIG--------LCHGHDIIPWG-------DPEALALLQRQLDVDILI--SGHTHKFE 162
G FRI L ++PW DPEAL L + DIL+ +G F
Sbjct: 8 GGFRIAGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPLLAEDRPDILLIGTGAEIAFL 67
>gnl|CDD|163643 cd07400, MPP_YydB, Bacillus subtilis YydB and related proteins,
metallophosphatase domain. YydB (BSU40220) is an
uncharacterized Bacillus subtilis protein that belongs
to the following Bacillus subtilis gene cluster
yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 144
Score = 27.7 bits (62), Expect = 3.0
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 11/64 (17%)
Query: 124 IGLCHGH-------DIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK----FYI 172
I + H D L + VD+++ GH H N I
Sbjct: 81 IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHGHKHVPYVGNISNAGGGLVVI 140
Query: 173 NPGS 176
G+
Sbjct: 141 GAGT 144
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 28.5 bits (64), Expect = 3.1
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 143 LLQRQLDVDILISGHTHKFEAYE--HENKF--------YINPGSATGAFNPLEPKVNPSF 192
+LQ+ + +LI H K E YE H NK Y GS GA+ L P + P F
Sbjct: 259 VLQKH-GLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGAYIKLGPDLTPHF 317
Query: 193 V 193
V
Sbjct: 318 V 318
>gnl|CDD|113530 pfam04763, DUF562, Protein of unknown function (DUF562). Family of
uncharacterized proteins.
Length = 146
Score = 27.4 bits (61), Expect = 3.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 71 EKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLD--GTSY 111
EK VV V H PE+++LL +L+ G SY
Sbjct: 15 EKNVVVV------CNHSTPGPESLPPESVSLLIEELEESGYSY 51
>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA
polymerase delta, subunit B [DNA replication,
recombination, and repair].
Length = 481
Score = 28.1 bits (63), Expect = 4.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 151 DILISGHTHKFEAYEHENKFYINPGS 176
D+ +GH HKF +E +N G+
Sbjct: 420 DVFHTGHVHKFGTGVYEGVNLVNSGT 445
>gnl|CDD|204415 pfam10212, TTKRSYEDQ, Predicted coiled-coil domain-containing
protein. This is the C-terminal 500 amino acids of a
family of proteins with a predicted coiled-coil domain
conserved from nematodes to humans. It carries a
characteristic TTKRSYEDQ sequence-motif. The function is
not known.
Length = 518
Score = 28.0 bits (62), Expect = 4.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 154 ISGHTHKFEAYEHENKFYINP 174
IS KF Y HEN Y+ P
Sbjct: 39 ISPLNQKFSQYLHENAAYVRP 59
>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha
subunit. This model represents the alpha (large) chain
of the class I ribonucleotide reductase (RNR). RNR's are
responsible for the conversion of the ribose sugar of
RNA into the deoxyribose sugar of DNA. This is the
rate-limiting step of DNA biosynthesis. Class I RNR's
generate the required radical (on tyrosine) via a
"non-heme" iron cofactor which resides in the beta
(small) subunit. The alpha subunit contains the
catalytic and allosteric regulatory sites. The mechanism
of this enzyme requires molecular oxygen. E. Coli
contains two versions of this enzyme which are regulated
independently (NrdAB and NrdEF, where NrdA and NrdE are
the large chains ). Most organisms contain only one, but
the application of the gene symbols NrdA and NrdE are
somewhat arbitrary. This model identifies RNR's in
diverse clades of bacteria, eukaryotes as well as
numerous DNA viruses and phage [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism].
Length = 617
Score = 28.1 bits (63), Expect = 4.8
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 35 LCTGNLVTKETFDY--LKTLASDVHVVRGDFDEGTSYPEKKVVTVGQFR--IGL-CHG-H 88
+ N V ++ FD+ L+ + + +YP Q R IG+ G H
Sbjct: 318 VNLANFVMEDKFDFSELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIGIGVMGLH 377
Query: 89 DI-----IPWGDPEALALLQR 104
D+ +P+ EA L R
Sbjct: 378 DVLAKLGLPYDSEEARDLNDR 398
>gnl|CDD|185607 PTZ00422, PTZ00422, glideosome-associated protein 50; Provisional.
Length = 394
Score = 27.9 bits (62), Expect = 5.3
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 144 LQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA--------FNPLEPKVNPSFVLM 195
L + VD+ ISG+ E E +IN GS + L + F +
Sbjct: 243 LLKDAQVDLYISGYDRNMEVLTDEGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIGFCIH 302
Query: 196 DIQSSNVVTYVYQ 208
++ + +VT
Sbjct: 303 ELNAEGMVTKFVS 315
>gnl|CDD|163616 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase
domain. Mre11 (also known as SbcD in Escherichia coli)
is a subunit of the MRX protein complex. This complex
includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital
role in several nuclear processes including DNA
double-strand break repair, telomere length maintenance,
cell cycle checkpoint control, and meiotic
recombination, in eukaryotes. During double-strand
break repair, the MRX complex is required to hold the
two ends of a broken chromosome together. In vitro
studies show that Mre11 has 3'-5' exonuclease activity
on dsDNA templates and endonuclease activity on dsDNA
and ssDNA templates. In addition to the N-terminal
phosphatase domain, the eukaryotic MRE11 members of this
family have a C-terminal DNA binding domain (not
included in this alignment model). MRE11-like proteins
are found in prokaryotes and archaea was well as in
eukaryotes. Mre11 belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 27.3 bits (61), Expect = 5.4
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 120 GQFRIGLCHGH--DIIPWGDPEALALLQRQLD--VDILISGHTHKFEAYEHENKFYINPG 175
F I L HG P A + + L D + GH H+ + + PG
Sbjct: 156 DDFNILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQIILGGGPPIVYPG 215
Query: 176 S 176
S
Sbjct: 216 S 216
>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor
(RyR). This SPRY domain (SPRY2) is the second of three
structural repeats in all three isoforms of the
ryanodine receptor (RyR), which are the major Ca2+
release channels in the membranes of sarcoplasmic
reticulum (SR). There are three RyR genes in mammals;
the skeletal RyR1, the cardiac RyR2 and the brain RyR3.
The three SPRY domains are located in the N-terminal
part of the cytoplasmic region of the RyRs, The SPRY2
domain has been shown to bind to the dihydropryidine
receptor (DHPR) II-III loop and the ASI region of RyR1.
Length = 133
Score = 26.5 bits (59), Expect = 6.5
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 66 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSY 111
G Y E +V+T G R+G W P L+ D SY
Sbjct: 14 GKWYFEFEVLTSGYMRVG---------WARPGFRPDLELGSDDLSY 50
>gnl|CDD|226753 COG4303, EutB, Ethanolamine ammonia-lyase, large subunit [Amino
acid transport and metabolism].
Length = 453
Score = 27.4 bits (61), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 90 IIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFR 123
+IP+ D E L+Q ++ T+Y K TV + R
Sbjct: 64 VIPYEDDEVTRLIQDDVNETAYNPIKNWTVSELR 97
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 27.2 bits (61), Expect = 7.4
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 17 GLPAKF-----KKLLVPGR------IQHILCTGNLVTKETFDYL-KTLASDVHV 58
G AK+ K + PGR ++ IL TG+ + E FD++ + SDV +
Sbjct: 333 GTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVKSDVWL 386
>gnl|CDD|184118 PRK13531, PRK13531, regulatory ATPase RavA; Provisional.
Length = 498
Score = 27.3 bits (61), Expect = 8.1
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 135 WGDPEALALLQRQLDVDILISGH 157
W D ++L LLQ+QL + L++ H
Sbjct: 285 WHDAQSLNLLQQQL--EQLMTEH 305
>gnl|CDD|203514 pfam06751, EutB, Ethanolamine ammonia lyase large subunit (EutB).
This family consists of several bacterial ethanolamine
ammonia lyase large subunit (EutB) proteins
(EC:4.3.1.7). Ethanolamine ammonia-lyase is a bacterial
enzyme that catalyzes the adenosylcobalamin-dependent
conversion of certain vicinal amino alcohols to oxo
compounds and ammonia. The enzyme is a heterodimer
composed of subunits of Mr approximately 55,000 (EutB)
and 35,000 (EutC).
Length = 443
Score = 27.0 bits (60), Expect = 8.7
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 75 VTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFR 123
+T+ F ++P+ E L+ D ++ K +TVG+FR
Sbjct: 44 ITLKDFLNNP-----VVPYEADEVTRLIIDSHDERAFAPVKHLTVGEFR 87
>gnl|CDD|236505 PRK09419, PRK09419, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 1163
Score = 27.1 bits (60), Expect = 9.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 136 GDPEALALLQRQLDVDILISGHTH 159
G+ L L ++ VD +IS HTH
Sbjct: 857 GEITGLELAKKVKGVDAIISAHTH 880
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.141 0.429
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,896,044
Number of extensions: 1142557
Number of successful extensions: 1141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 58
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)