RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10859
         (224 letters)



>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich,
           structural genomics, structural genomics consortium,
           SGC, protein transport; 2.20A {Cryptosporidium parvum}
           SCOP: d.159.1.7
          Length = 215

 Score =  220 bits (562), Expect = 3e-73
 Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 33/222 (14%)

Query: 2   LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRG 61
           LVL++GDL IP+    LP+ F++LL   +I ++LCTGN+ ++E  + LK +  +V++V G
Sbjct: 27  LVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNITKNVYIVSG 86

Query: 62  DFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQ 121
           D D     P+ +                                     +PE  VV +G+
Sbjct: 87  DLDSAIFNPDPES---------------------------------NGVFPEYVVVQIGE 113

Query: 122 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAF 181
           F+IGL HG+ ++PW DP +L   QR+LD DIL++GHTHK   +E   K ++NPG+ATGAF
Sbjct: 114 FKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFEKNGKLFLNPGTATGAF 173

Query: 182 NPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKK 223
           + L P   PSF+LM +Q + VV YVY L   +  V   ++ K
Sbjct: 174 SALTPDAPPSFMLMALQGNKVVLYVYDLRDGKTNVAMSEFSK 215


>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase,
           manganese, protein transport; 2.00A {Mus musculus} SCOP:
           d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A
           2r17_A
          Length = 192

 Score =  207 bits (527), Expect = 3e-68
 Identities = 147/224 (65%), Positives = 164/224 (73%), Gaps = 42/224 (18%)

Query: 1   MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60
           MLVLVLGDLHIPHR + LPAKFKKLLVPG+IQHILCTGNL TKE++DYLKTLA DVH+VR
Sbjct: 11  MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 70

Query: 61  GDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
           GDFD                                          +  +YPE+KVVTVG
Sbjct: 71  GDFD------------------------------------------ENLNYPEQKVVTVG 88

Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
           QF+IGL HGH +IPWGD  +LALLQRQ DVDILISGHTHKFEA+EHENKFYINPGSATGA
Sbjct: 89  QFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGA 148

Query: 181 FNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKKS 224
           +N LE  + PSFVLMDIQ+S VVTYVYQLI D+V VERI+YKKS
Sbjct: 149 YNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 192


>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue,
           structural genomics, PSI- 2, protein structure
           initiative; NMR {Thermotoga maritima}
          Length = 178

 Score =  152 bits (387), Expect = 4e-47
 Identities = 39/209 (18%), Positives = 68/209 (32%), Gaps = 53/209 (25%)

Query: 1   MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60
              L++ D H+P R + LP +    L       ++  G+ V  +T   L+  + + + V 
Sbjct: 23  KRFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDLDTVILLEKFSKEFYGVH 80

Query: 61  GDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
           G+ D                                               P  KV+ V 
Sbjct: 81  GNMDYPD---------------------------------------VKEHLPFSKVLLVE 101

Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
              IG+CHG    PW   +   L        +++ GHTH+ E        ++NPGS    
Sbjct: 102 GVTIGMCHGWG-APWDL-KDRLLKVFNEKPQVILFGHTHEPEDTVKAGVRFLNPGSLAE- 158

Query: 181 FNPLEPKVNPSFVLMDIQSSNVVTYVYQL 209
                     S+ ++++    V   +  L
Sbjct: 159 ---------GSYAVLELDGGEVRFELKTL 178


>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase
           COG0622); structural genomics, predicted
           phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus
           pneumoniae} SCOP: d.159.1.7
          Length = 176

 Score =  107 bits (269), Expect = 1e-29
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 53/223 (23%)

Query: 1   MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60
             ++V+ D H       +     + +  G++  +   G+            L   + VV+
Sbjct: 7   QTIIVMSDSHGDSLI--VEEVRDRYV--GKVDAVFHNGDS----ELRPDSPLWEGIRVVK 58

Query: 61  GDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
           G+ D                                              YPE+ V  +G
Sbjct: 59  GNMD------------------------------------------FYAGYPERLVTELG 76

Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
             +I   HGH      + + L    ++ +  I + GH H   A+      ++NPGS +  
Sbjct: 77  STKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKILFLNPGSISQ- 135

Query: 181 FNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKK 223
             P        +  ++I  S           +       ++ +
Sbjct: 136 --PRGTIRECLYARVEIDDSYFKVDFLTRDHEVYPGLSKEFSR 176


>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease,
           structural genomics, BSGC struc funded by NIH; 2.40A
           {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB:
           1s3m_A 1s3n_A 2ahd_A
          Length = 190

 Score = 89.0 bits (221), Expect = 3e-22
 Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 42/202 (20%)

Query: 1   MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60
           M + ++ D H          K  ++     ++ ++  G+ V+       + L +++    
Sbjct: 26  MKIGIMSDTHDHLPNI---RKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATY 82

Query: 61  GDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
           G+ D      ++ +  + +  I                              +   V + 
Sbjct: 83  GNNDGERCKLKEWLKDINEENI----------------------------IDDFISVEID 114

Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
             +  + HGH          L +  +    D++I GHTH+    E ++   INPG   G 
Sbjct: 115 DLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCG- 167

Query: 181 FNPLEPKVNPSFVLMDIQSSNV 202
              L     P+  ++D +    
Sbjct: 168 --YLTGI--PTIGILDTEKKEY 185


>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
           PSI, protein structure initiative, midwest center for
           structural genomics, MCSG; 2.25A {Escherichia coli}
           SCOP: d.159.1.7
          Length = 208

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 75/237 (31%)

Query: 1   MLVLVLGDLHIPHRTSGLPAKFKKLL---VPGRIQHILCTGNLVT-------------KE 44
           M ++   D+H      G     +++L        Q ++  G+++               +
Sbjct: 26  MKLMFASDIH------GSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAK 79

Query: 45  TFDYLKTLASDVHVVRG--DFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALL 102
             + L  +A  V  VRG  D +                                      
Sbjct: 80  VVERLNEVAHKVIAVRGNCDSEVD------------------------------------ 103

Query: 103 QRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFE 162
           Q  L        + V + + R+ L HGH       PE L  L      D+L+ GHTH   
Sbjct: 104 QMLLHFPITAPWQQVLLEKQRLFLTHGHLF----GPENLPALN---QNDVLVYGHTHLPV 156

Query: 163 AYEHENKFYINPGSATGAFNPLEPKVN--PSFVLMDIQSSNVVTYVYQLIADEVTVE 217
           A +    F+ NPGS +       PK     S+ ++D    +V+    Q I  +V + 
Sbjct: 157 AEQRGEIFHFNPGSVSI------PKGGNPASYGMLDNDVLSVIALNDQSIIAQVAIN 207


>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
           AP4A hydrolase, phosphodiesterase, binding, Mn2+
           binding, hydrolase; 1.90A {Streptococcus pneumoniae}
           PDB: 3qfn_A 3qfo_A*
          Length = 270

 Score = 56.6 bits (136), Expect = 7e-10
 Identities = 34/246 (13%), Positives = 72/246 (29%), Gaps = 51/246 (20%)

Query: 1   MLVLVLGDLHIPHRTSGLPAKFKKLL---VPGRIQHILCTGNLV-----TKETFDYLKTL 52
             + +L D+H         A  + +L       +      G+++      +   D L  L
Sbjct: 12  TKIALLSDIH-----GNTTA-LEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQL 65

Query: 53  ASDVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLD----- 107
                 V G++++           +                        +  ++      
Sbjct: 66  P-ITARVLGNWEDS----------LWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIE 114

Query: 108 -GTSYPEKKVVTVGQFRIGLCHGH-------DIIPWGDPEALALLQRQLDVDILISGHTH 159
              + P +     G   +G+ H         ++I  G  E    L      DI + GH H
Sbjct: 115 VLHNQPLQIHRQFGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIH 174

Query: 160 K-FEAYEHENKFYINPGSA---TGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVT 215
           +    Y    +  +NPGS          L   +   +++++     +V         ++ 
Sbjct: 175 QQLLRYGTGGQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLV---------DMD 225

Query: 216 VERIDY 221
             R+DY
Sbjct: 226 FRRVDY 231


>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
           initiative, southeast collaboratory for structural
           genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
           d.159.1.5 PDB: 2gju_A
          Length = 252

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 48/247 (19%)

Query: 1   MLVLVLGDLHIPHRTSGLPAKFKKLL--------VPGRIQHILCTGNLVT-----KETFD 47
           + V VL ++        LPA     L            I+     GN+V      KE  +
Sbjct: 2   VYVAVLANIA-----GNLPA-LTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIE 55

Query: 48  YLKTLAS--DVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQ 105
            +K L    +V ++RG +D+  +  +      G        GH        +AL     +
Sbjct: 56  VIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHV------KKALKFTWEK 109

Query: 106 LDGT------SYPEKKVVTVGQFRIGLCHGHDIIPWG--------DPEALALLQRQLDVD 151
           L           P   V  +G   +   +G  I P+              A+++   D +
Sbjct: 110 LGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYE 169

Query: 152 ILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNV----VTYVY 207
           +LI                 + PGS      P   +   +F L+D+ +       V Y  
Sbjct: 170 MLIVASPMYPVDAMTRYGRVVCPGSVG---FPPGKEHKATFALVDVDTLKPKFIEVEYDK 226

Query: 208 QLIADEV 214
           ++I + +
Sbjct: 227 KIIEERI 233


>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
           genomics, MCSG, Zn binding, hydrolase; 1.95A
           {Sphaerobacter thermophilus}
          Length = 246

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 43/237 (18%), Positives = 73/237 (30%), Gaps = 36/237 (15%)

Query: 1   MLVLVLGDLHIPHRTSGLPAKFKKLL-VPGRIQHILCTGNLV-----TKETFDYLKTLAS 54
           M +L++ D+H     + L A  + +L   GR+  I   G++V      +E  + ++ LA 
Sbjct: 4   MRILIISDVH-----ANLVA-LEAVLSDAGRVDDIWSLGDIVGYGPRPRECVELVRVLA- 56

Query: 55  DVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEK 114
               V G+ D                R         +     + L  L  ++        
Sbjct: 57  PNISVIGNHDWACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPNRMID------ 110

Query: 115 KVVTVGQFRIGLCHGHDIIPWG----DPEALALLQRQLDVDILISGHTHK-FEAYEHENK 169
                      + HG    P      +    AL     D  +   GHTH      E E  
Sbjct: 111 -------GDWTVVHGSPRHPIWEYIYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEAL 163

Query: 170 FYINPGSATGAFNPLEPK----VNPSFVLMDIQSSNVVTY-VYQLIADEVTVERIDY 221
             + P                 +NP  V          +Y +++  A  VT  R++Y
Sbjct: 164 SNVAPHHPNDGEVLDVSSGRYIINPGAVGQPRDGDPRASYAIFEPDAQRVTFHRVEY 220


>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
           metalloprotein, metallophosphoesterase, protein
           structure initiative; 1.70A {Danio rerio} SCOP:
           d.159.1.12
          Length = 322

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 93  WGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDI-IPWGDPEALALLQRQLDVD 151
               + L  L   L  + + +++V+      +  C    I + W     L++L+    V 
Sbjct: 200 GFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVL 259

Query: 152 ILISGHTHKFEAYEHENKF-YINPGSAT 178
             I+GH H        +   +I      
Sbjct: 260 CFIAGHDHDGGRCTDSSGAQHITLEGVI 287


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 58/176 (32%)

Query: 67  TSYPEKKVVTVGQFRIGLCHGHD--IIPWGDPEALALLQRQLDGTSYP-----------E 113
           +  P  K V      I L +G    ++  G P++L  L   L     P           E
Sbjct: 358 SHLPAGKQV-----EISLVNGAKNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411

Query: 114 KKVVTVGQF-RIGL-CHGHDIIPWGDPEALALLQRQL-DVDILISGHTHKFEAYEHENKF 170
           +K+    +F  +    H H ++P     A  L+ + L   ++  +    +   Y+     
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVP-----ASDLINKDLVKNNVSFNAKDIQIPVYD----- 461

Query: 171 YINPGSATGAFNPLEPKVNPSFVLMDIQ--SSNVVTYVYQLIADEVTVERIDYKKS 224
                +  G+               D++  S ++     + I D +    + ++ +
Sbjct: 462 -----TFDGS---------------DLRVLSGSIS----ERIVDCIIRLPVKWETT 493



 Score = 33.1 bits (75), Expect = 0.079
 Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 41/121 (33%)

Query: 8   DLHIP--HRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDV-HVVRGDFD 64
           D+ IP      G  +  + L   G I   +   + + +    +  T      H++  DF 
Sbjct: 454 DIQIPVYDTFDG--SDLRVL--SGSISERIV--DCIIRLPVKWETTTQFKATHIL--DFG 505

Query: 65  EGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRI 124
            G           G   +G                 L  R  DGT     +V+  G   I
Sbjct: 506 PG-----------GASGLG----------------VLTHRNKDGTGV---RVIVAGTLDI 535

Query: 125 G 125
            
Sbjct: 536 N 536



 Score = 27.7 bits (61), Expect = 4.1
 Identities = 29/166 (17%), Positives = 49/166 (29%), Gaps = 54/166 (32%)

Query: 38  GNLVTKETFDYLKTLASDVHVVRGDF-DEGTSYPEKKVVTVGQFRIGLCHGHDIIPW--- 93
           GN  T + F+ L+ L    HV+ GD          + + T          G +I+ W   
Sbjct: 164 GN--TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221

Query: 94  ----GDPEALA----------LLQ--------RQLDGTSYPEKKVVTVGQFRIGLC---- 127
                D + L           ++Q        + L           T G+ R  L     
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG---------FTPGELRSYLKGATG 272

Query: 128 HGHDIIP---------WGDPEALALLQRQLDVDILISGHTHKFEAY 164
           H   ++          W        +++ + V   I    +  EAY
Sbjct: 273 HSQGLVTAVAIAETDSW--ESFFVSVRKAITVLFFIGVRCY--EAY 314



 Score = 26.9 bits (59), Expect = 7.2
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 30/130 (23%)

Query: 51   TLASDVHVV--RGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDG 108
            ++ S V VV  RG   +      +  +    + +   +   +      EAL  +  ++  
Sbjct: 1778 SIESLVEVVFYRGMTMQVA--VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835

Query: 109  TSYPEKKVVTV-------GQFRIGLCHGHDIIPWGDPEALALLQRQLD------VDILIS 155
             +     +V +        Q+             GD  AL  +   L+      +DI+  
Sbjct: 1836 RT---GWLVEIVNYNVENQQYVAA----------GDLRALDTVTNVLNFIKLQKIDIIEL 1882

Query: 156  GHTHKFEAYE 165
              +   E  E
Sbjct: 1883 QKSLSLEEVE 1892


>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
           phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
           SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
          Length = 274

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 37/242 (15%), Positives = 70/242 (28%), Gaps = 58/242 (23%)

Query: 1   MLVLVLGDLHIPHRTSGLP------AKFKKLL-----VPGRIQHILCTGNLV---TKETF 46
           ML+  + D H   R   L       A    ++     +  R   ++ +G++V     E +
Sbjct: 1   MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEY 60

Query: 47  ----DYLKTLASDVHVVRG---DFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPW------ 93
                 L +L   ++++ G   D      Y +     +G     +    D          
Sbjct: 61  QVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFID 120

Query: 94  --------G--DPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDP----- 138
                   G    E ++ L+ QL      +K             H H  +P G+      
Sbjct: 121 SSRAGTSKGWLTDETISWLEAQLF--EGGDKPATIF-------MH-HPPLPLGNAQMDPI 170

Query: 139 ------EALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSF 192
                   LAL++R   +  +  GH H     ++                      +P +
Sbjct: 171 ACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYY 230

Query: 193 VL 194
            L
Sbjct: 231 DL 232


>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
           swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
           tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
          Length = 330

 Score = 35.3 bits (81), Expect = 0.011
 Identities = 35/237 (14%), Positives = 62/237 (26%), Gaps = 53/237 (22%)

Query: 1   MLVLVLGDLHIPHRTSGL------PAKFKKLL-----VPGRIQHILCTGNLV---TKETF 46
            ++L + D H+      L        +  +LL        R   I+ TG+L        +
Sbjct: 26  YVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAY 85

Query: 47  DYLK--------TLASDVHVVRG--DF----------DEGTSYPEKKVVTVGQFRI---- 82
             L+         L +++  V G  D           +  +  P  +V  +   RI    
Sbjct: 86  RKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLD 145

Query: 83  ----GLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQ---FRIGLCHGHDIIPW 135
               G  HG           L  L  +L   +      +                  +  
Sbjct: 146 TSVPGHHHGE-----IRASQLGWLAEELA--TPAPDGTILALHHPPIPSV-LDMAVTVEL 197

Query: 136 GDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSF 192
            D  AL  + R  DV  +++GH H                +     +          
Sbjct: 198 RDQAALGRVLRGTDVRAILAGHLHYSTNATFVGIPVSVASATCYTQDLTVAAGGTRG 254


>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A
           phosphatase, motor protein, structur protein, membrane
           protein; 1.70A {Plasmodium falciparum 3D7}
          Length = 342

 Score = 34.5 bits (78), Expect = 0.018
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 139 EALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPS------- 191
             L  L +  +VD+ ISGH +  E  E  +  +I  GS            N         
Sbjct: 215 YYLLPLLKDAEVDLYISGHDNNMEVIEDNDMAHITCGSG-SMSQGKSGMKNSKSLFFSSD 273

Query: 192 --FVLMDIQSSNVVTYVYQLIADEVTVERIDYKK 223
             F + ++ ++ +VT        EV        K
Sbjct: 274 IGFCVHELSNNGIVTKFVSSKKGEVIYTHKLNIK 307


>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
           monocytogenes}
          Length = 443

 Score = 30.9 bits (69), Expect = 0.29
 Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 4/68 (5%)

Query: 95  DPEALALLQRQLDGTSYPEKKVVTVGQ---FRIGLCHGHDIIPWGDPEALALLQRQLDVD 151
               L  ++           K++ V                    + + +  L     +D
Sbjct: 217 TAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTE-GAMD 275

Query: 152 ILISGHTH 159
             +SGH H
Sbjct: 276 FSLSGHIH 283


>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
           hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
           coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
           1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
          Length = 516

 Score = 30.4 bits (69), Expect = 0.51
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 124 IGLCH-GHDIIPWGDPEA-----LALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 177
           I   H GH         A     +A       + +++ GH+        ENK  ++    
Sbjct: 188 IAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPG 247

Query: 178 T 178
           T
Sbjct: 248 T 248


>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics,
           PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus
           subtilis subsp}
          Length = 341

 Score = 30.1 bits (68), Expect = 0.61
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 124 IGLCH-GHDI---IPWGDPEALALLQRQLDVDILISGHTHKF 161
           I L H G +        +     L  +   +D +ISGH H  
Sbjct: 212 IALAHTGIEKQAQSSGAENAVFDLATKTKGIDAIISGHQHGL 253


>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
           bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
           2.43A {Klebsiella pneumoniae subsp}
          Length = 339

 Score = 29.7 bits (67), Expect = 0.67
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)

Query: 124 IGLCHG---HDIIPWGDPEALALLQRQLDVDILISGHTHKF 161
           + + H     D        ++  L +   VD ++ GH H  
Sbjct: 206 VVVAHSGLSADPYQAMAENSVYYLSQVPGVDAIMFGHAHAV 246


>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc,
          tetramer; 2.35A {Geobacillus stearothermophilus} SCOP:
          b.35.1.2 c.2.1.1 PDB: 3pii_A
          Length = 339

 Score = 29.4 bits (67), Expect = 0.74
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 54 SDVHVVRGDFDEGTSYP 70
          +D+H   GD+      P
Sbjct: 40 TDLHAAHGDWPVKPKLP 56


>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
          oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
          PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
          Length = 340

 Score = 29.1 bits (66), Expect = 1.1
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 54 SDVHVVRGDFDEGTSYP 70
          +D+H   GD+    + P
Sbjct: 42 TDLHAADGDWPVKPTLP 58


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 1.2
 Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 57/248 (22%)

Query: 23  KKLLVPGRIQHILCTGNLV--TKETFDYLKTLASDV------HVVRGDFD-------EGT 67
           K +L    I HI+ + + V  T   F  L +   ++       V+R ++           
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 68  SYPEKKVVTVGQFRIGLCHGHDIIPWGD---PEALALLQRQLDGTSYPEKKVVTVGQFRI 124
             P        + R  L + + +    +    +    L++ L     P K V+  G    
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGS 161

Query: 125 G-------LCHGHDI-------IPW------GDPEALALLQRQLDVDILISGHTHKFEAY 164
           G       +C  + +       I W        PE +  + ++L   I  +         
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT----SRS 217

Query: 165 EHENKFYINPGSATGAFNPL---EPKVNPSFVLMDIQSSNV-----------VTYVYQLI 210
           +H +   +   S       L   +P  N   VL+++Q++             +T  ++ +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 211 ADEVTVER 218
            D ++   
Sbjct: 278 TDFLSAAT 285



 Score = 27.1 bits (59), Expect = 6.8
 Identities = 44/306 (14%), Positives = 78/306 (25%), Gaps = 103/306 (33%)

Query: 14  RTSGLPAKFKKLLVPGRIQHILCTGNLVTK-ETFDYL---------KT-LASDV---HVV 59
           R       F K  V  R+Q  L     + +      +         KT +A DV   + V
Sbjct: 118 RLYNDNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 60  RGDFDEGTSYPEKKVVTVGQFRI---------GLCH-----------GHDIIPWGDPEAL 99
           +   D    +     + +               L +               I        
Sbjct: 177 QCKMDFKIFW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 100 ALLQRQLDGTSYPE---------------------KKVVT----------VGQFRIGLCH 128
           A L+R L    Y                       K ++T                 +  
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 129 GHDIIPWGDPEALALLQRQLDVDI--------------------LISGHTHKFEAYEHEN 168
            H  +     E  +LL + LD                        I      ++ ++H N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 169 KFYINPGSATGAF-NPLEPK-VNPSFVLMDI--QSSNVVTYVYQLI---ADEVTVERI-- 219
              +   +   +  N LEP      F  + +   S+++ T +  LI     +  V  +  
Sbjct: 352 CDKLT--TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 220 -DYKKS 224
             +K S
Sbjct: 410 KLHKYS 415


>1yco_A Branched-chain phosphotransacylase; structural genomics, protein
           structure initiative, PSI, nysgxrc; 2.40A {Enterococcus
           faecalis}
          Length = 279

 Score = 28.7 bits (65), Expect = 1.3
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 94  GDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALA----LLQRQLD 149
             PE L L+++ L     P + +V      +   +    +   D  A+A     L     
Sbjct: 10  SQPEILQLVKKALKEAEQPLQFIVFDTNENLDTENLWKYVHCSDEAAVAQEAVSLVATGQ 69

Query: 150 VDILISGHTH 159
             IL+ G   
Sbjct: 70  AQILLKGIIQ 79


>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
           initiative, NEW YORK SGX research center for structural
           genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
           PDB: 3ivd_A*
          Length = 509

 Score = 28.8 bits (65), Expect = 1.3
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 120 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAY 164
           G        G   +     + +    +   +DILI+GH H     
Sbjct: 196 GVPARQSSMGGTDVRRALDKDIQTASQVKGLDILITGHAHVGTPE 240


>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
          coordination, intramolec disulfide bonds,
          oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
          cerevisiae}
          Length = 347

 Score = 28.7 bits (65), Expect = 1.6
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 54 SDVHVVRGDFDEGTSYP 70
          +D+H   GD+      P
Sbjct: 45 TDLHAWHGDWPLPVKLP 61


>3qfk_A Uncharacterized protein; structural genomics, center for structural
           genomics of infec diseases, csgid, phosphoesterase,
           hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus
           subsp}
          Length = 527

 Score = 28.9 bits (65), Expect = 1.6
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 124 IGLCHG----------HDIIPWGDPEALALLQRQLD-VDILISGHTHKFEAYEHENKFYI 172
           +   HG             +  G+ E  A+L+     +DI I+GH H+  A   +    I
Sbjct: 203 VVCYHGGFEKDLESGTPTEVLTGENEGYAMLEAFSKDIDIFITGHQHRQIAERFKQTAVI 262

Query: 173 NPGS 176
            PG+
Sbjct: 263 QPGT 266


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 27.9 bits (62), Expect = 3.5
 Identities = 27/170 (15%), Positives = 49/170 (28%), Gaps = 52/170 (30%)

Query: 88   HDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDI--------------- 132
             D+ P+   +  A   +   G      ++   G++ + L  G  +               
Sbjct: 930  EDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQ 989

Query: 133  IPWG-DPEALAL---LQRQLDVDI---LISGHTHKFEAYEH-------ENKFYINP---- 174
            IP G + +   +   +  Q+D      L+S      EA+         E   Y++     
Sbjct: 990  IPTGWNAKTYGISDDIISQVDPITLFVLVSVV----EAFIASGITDPYEMYKYVHVSEVG 1045

Query: 175  ---GSATGAFNPLE----------PKVNPSFVLMDIQ--SSNVVTYVYQL 209
               GS  G  + L           P  N       I   S+ V   +   
Sbjct: 1046 NCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISS 1095



 Score = 27.1 bits (60), Expect = 6.3
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 28/71 (39%)

Query: 100 ALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTH 159
            +   +L+G    E+ +V  G   +G        PWG                  S  T 
Sbjct: 804 QIAPAELEGLLDLERVIVVTGFAEVG--------PWG------------------SARTR 837

Query: 160 KFEAYEHENKF 170
            +E  E   +F
Sbjct: 838 -WEM-EAFGEF 846


>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN
           nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A
           {Haemophilus influenzae} PDB: 3zu0_A*
          Length = 579

 Score = 27.6 bits (61), Expect = 3.9
 Identities = 6/26 (23%), Positives = 16/26 (61%)

Query: 136 GDPEALALLQRQLDVDILISGHTHKF 161
           G  + + + Q+  D+D++++G +H  
Sbjct: 205 GSEKNIEIAQKVNDIDVIVTGDSHYL 230


>1fnu_A Exotoxin type A precursor (allele 1); superantigen, exotoxin A;
           1.94A {Streptococcus pyogenes phage T12} SCOP: b.40.2.2
           d.15.6.1 PDB: 1fnv_A 1fnw_A 1uup_A 1l0y_B 1l0x_B 1b1z_A
           1ha5_A
          Length = 221

 Score = 27.0 bits (59), Expect = 4.4
 Identities = 16/102 (15%), Positives = 34/102 (33%)

Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
            + +   +   +      + +A L +  +VDI    + H     E+  +     G  T  
Sbjct: 47  IYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNH 106

Query: 181 FNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYK 222
                       V + I     +++  +     VT + +DYK
Sbjct: 107 EGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYK 148


>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
           function, NPPSFA, national PROJ protein structural and
           functional analyses; 1.60A {Aquifex aeolicus} SCOP:
           d.159.1.6
          Length = 260

 Score = 27.0 bits (59), Expect = 4.7
 Identities = 22/207 (10%), Positives = 53/207 (25%), Gaps = 33/207 (15%)

Query: 2   LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTK---ETFDYLKTLASDVHV 58
           +++V+G++           +          + I    + + +   + F  +  L     V
Sbjct: 35  ILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREIGELGVKTFV 94

Query: 59  VRGDFD-----------------EGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALAL 101
           V G  D                        +           +  G  +      E   L
Sbjct: 95  VPGKNDAPLKIFLRAAYEAETAYPNIRVLHEGFAGWRGEFEVIGFGGLLTEHEFEEDFVL 154

Query: 102 LQRQLDGTSYPEKKVVTVGQFRIGLCH------GHDIIPWGDP----EALALLQRQLDVD 151
              +       +       +  + + +        D  P          +  + + L+ +
Sbjct: 155 KYPRWYVEYILKFVNELKPRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPE 214

Query: 152 ILISGHTHKFEAYEHENK-FYINPGSA 177
           + I GH    + +E       +NPG  
Sbjct: 215 VAIVGHVG--KGHELVGNTIVVNPGEF 239


>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large
           subunit (EUTB), structural genomics; HET: MSE; 2.15A
           {Listeria monocytogenes serotype 4B}
          Length = 455

 Score = 27.1 bits (60), Expect = 5.3
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 88  HDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFR 123
           + ++P+   E   ++Q Q++   +   K  TV + R
Sbjct: 63  NPVVPYETDEVTRIIQDQVNDRIHDSIKNWTVEELR 98


>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid
           phosphatase metalloenzyme, uteroferrin, hydrolase; HET:
           NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A*
           2bq8_X 1qfc_A* 1qhw_A*
          Length = 313

 Score = 26.9 bits (59), Expect = 5.3
 Identities = 9/47 (19%), Positives = 15/47 (31%)

Query: 144 LQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNP 190
           L     V   + GH H  +  + EN        A    +P +  +  
Sbjct: 208 LLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMDPSKKHLRK 254


>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
           cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
           {Azotobacter vinelandii}
          Length = 458

 Score = 27.0 bits (60), Expect = 6.1
 Identities = 7/35 (20%), Positives = 10/35 (28%)

Query: 131 DIIPWGDPEALALLQRQLDVDILISGHTHKFEAYE 165
             +  GD E L    R     ++I        A  
Sbjct: 357 PSVRVGDLEDLEHAARAGQAQLVIGNSHALASARR 391


>1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium
           camemberti} SCOP: c.69.1.17
          Length = 279

 Score = 26.8 bits (59), Expect = 6.5
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 17/54 (31%)

Query: 98  ALALL-QRQLDGTSYPEKKVVTVGQFRIG----------------LCHGHDIIP 134
           A+A L    L G  YP  K+      R+G                  H +D +P
Sbjct: 149 AVATLAATDLRGKGYPSAKLYAYASPRVGNAALAKYITAQGNNFRFTHTNDPVP 202


>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
           transferase; purine ribonucleotide biosynthesis; HET:
           ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
          Length = 433

 Score = 26.9 bits (60), Expect = 6.7
 Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 9/43 (20%)

Query: 126 LCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHEN 168
           + H   +    D + L  +  +   D +I          E E 
Sbjct: 59  VAHRSYVGNMMDKDFLWSVVEREKPDAII---------PEIEA 92


>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
           structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
           thermophilus} SCOP: d.114.1.1 d.159.1.2
          Length = 552

 Score = 26.9 bits (60), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 136 GDPEALALLQRQLDVDILISGHTHKF 161
           G  E L L +R + V +++ GH+H  
Sbjct: 217 GYGEDLKLARRLVGVQVIVGGHSHTL 242


>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics,
           structural genomics consortium, SGC, NU MUTT-like,
           hydrolase, magnesium binding; 2.70A {Homo sapiens}
          Length = 218

 Score = 26.5 bits (58), Expect = 7.7
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 9/107 (8%)

Query: 72  KKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHD 131
           + +V V QFR  +  G     +    A        +                + LC G  
Sbjct: 49  RSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGS----AGVTVELCAGLV 104

Query: 132 IIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSAT 178
             P    E +A   ++   +    G+            ++   G   
Sbjct: 105 DQPGLSLEEVA--CKEAWEE---CGYHLAPSDLRRVATYWSGVGLTG 146


>1ty0_A Putative exotoxin (superantigen); T-cell receptor binding,
           mutagenesis, dimerization, immune system; 1.75A
           {Streptococcus pyogenes} SCOP: b.40.2.2 d.15.6.1 PDB:
           1ty2_A
          Length = 211

 Score = 26.2 bits (57), Expect = 7.9
 Identities = 6/41 (14%), Positives = 15/41 (36%)

Query: 182 NPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYK 222
           +  E       +L+D      +    ++     T++  D+K
Sbjct: 97  SNSENSKIVGNLLIDGVQQKTLINPIKIDKPIFTIQEFDFK 137


>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt,
           cobalamin; HET: B12; 2.05A {Escherichia coli} PDB:
           3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
          Length = 453

 Score = 26.3 bits (58), Expect = 9.2
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 88  HDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFR 123
           + +I + D     L+Q  ++ T+Y + K  ++ + R
Sbjct: 62  NPVIAYEDDCVTRLIQDDVNETAYNQIKNWSISELR 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,707,091
Number of extensions: 230793
Number of successful extensions: 669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 71
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)