RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10859
(224 letters)
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29
{Cryptosporidium parvum [TaxId: 5807]}
Length = 193
Score = 181 bits (461), Expect = 8e-59
Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 33/222 (14%)
Query: 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRG 61
LVL++GDL IP+ LP+ F++LL +I ++LCTGN+ ++E + LK + +V++V G
Sbjct: 5 LVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNITKNVYIVSG 64
Query: 62 DFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQ 121
D D P+ + +PE VV +G+
Sbjct: 65 DLDSAIFNPDPES---------------------------------NGVFPEYVVVQIGE 91
Query: 122 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAF 181
F+IGL HG+ ++PW DP +L QR+LD DIL++GHTHK +E K ++NPG+ATGAF
Sbjct: 92 FKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFEKNGKLFLNPGTATGAF 151
Query: 182 NPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKK 223
+ L P PSF+LM +Q + VV YVY L + V ++ K
Sbjct: 152 SALTPDAPPSFMLMALQGNKVVLYVYDLRDGKTNVAMSEFSK 193
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 182
Score = 166 bits (421), Expect = 8e-53
Identities = 148/224 (66%), Positives = 164/224 (73%), Gaps = 42/224 (18%)
Query: 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVR 60
MLVLVLGDLHIPHR + LPAKFKKLLVPG+IQHILCTGNL TKE++DYLKTLA DVH+VR
Sbjct: 1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60
Query: 61 GDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVG 120
GDFDE +YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ D
Sbjct: 61 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFD------------- 107
Query: 121 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 180
VDILISGHTHKFEA+EHENKFYINPGSATGA
Sbjct: 108 -----------------------------VDILISGHTHKFEAFEHENKFYINPGSATGA 138
Query: 181 FNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKKS 224
+N LE + PSFVLMDIQ+S VVTYVYQLI D+V VERI+YKKS
Sbjct: 139 YNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 73.7 bits (180), Expect = 3e-17
Identities = 31/204 (15%), Positives = 67/204 (32%), Gaps = 46/204 (22%)
Query: 1 MLVLVLGDLHIPHRTSGLPA--KFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHV 58
M + ++ D H LP K ++ ++ ++ G+ V+ + L +++
Sbjct: 1 MKIGIMSDTH-----DHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIA 55
Query: 59 VRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVT 118
G+ D ++ + + + I + V
Sbjct: 56 TYGNNDGERCKLKEWLKDINEENI----------------------------IDDFISVE 87
Query: 119 VGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSAT 178
+ + + HGH L + + D++I GHTH+ E ++ INPG
Sbjct: 88 IDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECC 141
Query: 179 GAFNPLEPKVNPSFVLMDIQSSNV 202
G P+ ++D +
Sbjct: 142 GYLTG-----IPTIGILDTEKKEY 160
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 173
Score = 72.1 bits (176), Expect = 1e-16
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 14/176 (7%)
Query: 52 LASDVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQ----RQLD 107
+ SD H +E KV V H D D ++
Sbjct: 8 VMSDSHGDSLIVEEVRDRYVGKVDAV-------FHNGDSELRPDSPLWEGIRVVKGNMDF 60
Query: 108 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE 167
YPE+ V +G +I HGH + + L ++ + I + GH H A+
Sbjct: 61 YAGYPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEG 120
Query: 168 NKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVERIDYKK 223
++NPGS + P + ++I S + ++ +
Sbjct: 121 KILFLNPGSISQ---PRGTIRECLYARVEIDDSYFKVDFLTRDHEVYPGLSKEFSR 173
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 59.6 bits (143), Expect = 9e-12
Identities = 34/230 (14%), Positives = 63/230 (27%), Gaps = 61/230 (26%)
Query: 1 MLVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLV-------------TKETFD 47
M ++ D+H + +L Q ++ G+++ + +
Sbjct: 2 MKLMFASDIHGSLP---ATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVE 58
Query: 48 YLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLD 107
L +A V VRG+ D ++ L
Sbjct: 59 RLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLE--------------------- 97
Query: 108 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE 167
+ G L D+L+ GHTH A +
Sbjct: 98 --------------------KQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRG 137
Query: 168 NKFYINPGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADEVTVE 217
F+ NPGS + S+ ++D +V+ Q I +V +
Sbjct: 138 EIFHFNPGSVSIPKGGNP----ASYGMLDNDVLSVIALNDQSIIAQVAIN 183
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 42.4 bits (98), Expect = 2e-05
Identities = 25/232 (10%), Positives = 59/232 (25%), Gaps = 38/232 (16%)
Query: 1 MLVLVLGDLHI------PHRTSGLPAKFKKLL-----VPGRIQHILCTGNLVTKETFDYL 49
ML+ + D H + + A ++ + R ++ +G++V +
Sbjct: 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEY 60
Query: 50 KTLAS-------DVHVVRGDFDE----------------GTSYPEKKVVTVGQFRIGLCH 86
+ ++++ G+ D+ + + V R+
Sbjct: 61 QVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFID 120
Query: 87 GHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQ----FRIGLCHGHDIIPWGDPEALA 142
+ K T+ +G I LA
Sbjct: 121 SSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLA 180
Query: 143 LLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVL 194
L++R + + GH H ++ +P + L
Sbjct: 181 LVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDL 232
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 40.9 bits (94), Expect = 5e-05
Identities = 17/176 (9%), Positives = 43/176 (24%), Gaps = 3/176 (1%)
Query: 2 LVLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRG 61
+ ++G+L S A F ++L + G + ++
Sbjct: 35 AIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAPIWEYLREAANVELVHPEM 94
Query: 62 DFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQ 121
T + V + + A + + K +
Sbjct: 95 RNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYPKIFL 154
Query: 122 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 177
F H + +A L + + +++ + + + PG
Sbjct: 155 FHT--MPYHKGLNEQGSHEVAHLIKTHNPLLVLVAGKGQKH-EMLGASWVVVPGDL 207
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 39.8 bits (92), Expect = 8e-05
Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 21/196 (10%)
Query: 3 VLVLGDLHIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTK--ETFDYLK-TLASDVHVV 59
+ V+GDLH + L K + + ++ G+LV + E + L+ V
Sbjct: 15 IWVVGDLHGCYTN--LMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAV 72
Query: 60 RGDFDE-------GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYP 112
RG+ ++ ++ G + L + +I+ L ++ S
Sbjct: 73 RGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKD 132
Query: 113 EKKVVTVGQF-----RIGLCHGHDIIPWGDPEALA----LLQRQLDVDILISGHTHKFEA 163
+K V+ + G H + W +++ D I GHT +
Sbjct: 133 KKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKP 192
Query: 164 YEHENKFYINPGSATG 179
+ N+ YI+ G+
Sbjct: 193 LKFANQMYIDTGAVFC 208
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
Length = 320
Score = 37.8 bits (86), Expect = 5e-04
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 95 DPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHD-IIPWGDPEALALLQRQLDVDIL 153
+ L L L + + +++V+ + C + W L++L+ V
Sbjct: 200 SEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCF 259
Query: 154 ISGHTHKFEAYEHENKF-YINPGSATGAFNPLEPKVNPSFVLMDI 197
I+GH H + +I P + +F +
Sbjct: 260 IAGHDHDGGRCTDSSGAQHITLEGVIET-----PPHSHAFATAYL 299
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 35.8 bits (81), Expect = 0.002
Identities = 15/163 (9%), Positives = 39/163 (23%), Gaps = 5/163 (3%)
Query: 19 PAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDFDEGTSYPEK---KVV 75
KF + + ++ + G ++ + +V+
Sbjct: 75 LDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVLHEGFAGWRGEFEVI 134
Query: 76 TVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHD-IIP 134
G D + + + + ++ +
Sbjct: 135 GFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNELKPRRLVTIFYTPPIGEFVDRTPEDPK 194
Query: 135 WGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 177
+ + + L+ ++ I GH K N +NPG
Sbjct: 195 HHGSAVVNTIIKSLNPEVAIVGHVGKGHE-LVGNTIVVNPGEF 236
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 34.7 bits (78), Expect = 0.005
Identities = 27/220 (12%), Positives = 57/220 (25%), Gaps = 9/220 (4%)
Query: 2 LVLVLGDL----HIPHRTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVH 57
+L+ GDL T ++ I GN + + L D
Sbjct: 43 FILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFG 102
Query: 58 VV----RGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPE 113
+V Y + + G++ + + I + A + +
Sbjct: 103 LVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLF 162
Query: 114 KKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYIN 173
+ D + L GH HK + +
Sbjct: 163 RPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIHKRYETSYSGSPVVY 222
Query: 174 PGSATGAFNPLEPKVNPSFVLMDIQSSNVVTYVYQLIADE 213
PGS ++ + +V + + + V + ++ D
Sbjct: 223 PGS-LERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDF 261
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 302
Score = 31.3 bits (69), Expect = 0.074
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 8/127 (6%)
Query: 99 LALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHT 158
LA +++QL V HG L V + GH
Sbjct: 164 LAWIKKQLAAAKEDYVLVAGHYPVWSIAEHGPTHCLVKQLLPL---LTTHKVTAYLCGHD 220
Query: 159 HKFEAYEHENKFYINPGSATGAFNPLE--PKVNPSFVLMDIQSSNVVTYVYQLI---ADE 213
H + + EN A +P + + P+ L + + + E
Sbjct: 221 HNLQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKE 280
Query: 214 VTVERID 220
++V I+
Sbjct: 281 MSVTYIE 287
>d3buxb1 a.39.1.7 (B:178-263) Cbl {Human (Homo sapiens) [TaxId:
9606]}
Length = 86
Score = 29.4 bits (66), Expect = 0.079
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 109 TSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFE 162
++ EK +V FR L H I EA+AL + +D+ + + FE
Sbjct: 15 KAFGEKTIVPWKSFRQALHEVHPISS--GLEAMAL---KSTIDLTCNDYISVFE 63
Score = 26.0 bits (57), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 67 TSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALAL 101
++ EK +V FR L H I EA+AL
Sbjct: 15 KAFGEKTIVPWKSFRQALHEVHPISS--GLEAMAL 47
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase,
catalytic domain {Kidney bean (Phaseolus vulgaris)
[TaxId: 3885]}
Length = 312
Score = 29.1 bits (64), Expect = 0.45
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 8/115 (6%)
Query: 80 FRIGLCHGHDIIPWGDPEALALLQRQLDGT------SYPEKKVVTVGQFRIGLCHGHDII 133
+ H + + L S +V + + H +
Sbjct: 120 IKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFME 179
Query: 134 PWGDPEALALLQRQLDVDILISGHTHKFEAYEH--ENKFYINPGSATGAFNPLEP 186
+ VD++ +GH H +E E + I G T + P
Sbjct: 180 GEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAP 234
>d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId:
86665]}
Length = 376
Score = 28.0 bits (62), Expect = 0.89
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 135 WGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKVNPSFVL 194
WGD + + +L HT N + F P +PS+ L
Sbjct: 139 WGDGDEQPFNYSEQARKLL---HTCVHNGEGGPGHPMWNRDNKLIKFIPEVEFSDPSYHL 195
Query: 195 M 195
Sbjct: 196 P 196
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
[TaxId: 2336]}
Length = 210
Score = 26.5 bits (58), Expect = 2.5
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 14 RTSGLPAKFKKLLVPGRIQHILCTGNLVTKETFDYLKTLASDVHVVRGDFDEG 66
T K ++L + I + E + ++ DV + DE
Sbjct: 136 ATGVSSIKAIEILKENGAKKITLVALIAAPEGVEAVEKKYEDVKIYVAALDER 188
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 26.1 bits (56), Expect = 3.1
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 9/131 (6%)
Query: 43 KETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQF--RIGLCHGHDIIPWGDPEALA 100
++ L SD H T KV+ G+ G + P
Sbjct: 95 EDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTT 154
Query: 101 LLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQ-----RQLDVDILIS 155
+ D + + V +G + + A + DI +
Sbjct: 155 WTMKLKDHG--KQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMRCDIFLG 212
Query: 156 GHTHKFEAYEH 166
H F+
Sbjct: 213 SHAGMFDLKNK 223
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 26.2 bits (57), Expect = 3.9
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 8/143 (5%)
Query: 31 IQHILCTGNLVTKETFDYLKTLASDVHVVRGDFDEGTSYPEKKVVTVGQF-----RIGLC 85
+ + T +++ L+ E ++ Q ++ L
Sbjct: 258 VPFKTLRTPIGVSATDEFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVALL 317
Query: 86 HGHD-IIPWGDP--EALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALA 142
D II E A+ + + GT + + G + GD +
Sbjct: 318 GDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVH 377
Query: 143 LLQRQLDVDILISGHTHKFEAYE 165
+ VD+LIS KF A E
Sbjct: 378 QWIKNEGVDLLISNTYGKFIARE 400
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex
aeolicus [TaxId: 63363]}
Length = 188
Score = 24.8 bits (53), Expect = 7.5
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 55 DVHVVRGDFDEGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDGTSYPEK 114
D GDF + + + G I+ G+ + ++ Y
Sbjct: 45 DTLYHLGDFTWHFNDKNEYLRIWKA-----LPGRKILVMGNHDKDKESLKEYFDEIYDFY 99
Query: 115 KVVTVGQFRIGLCH-----GHDIIPWGDPEALALLQRQLDVDILISGHTHK 160
K++ RI L H E + + + + D+LI GH H
Sbjct: 100 KIIEHKGKRILLSHYPAKDPITERYPDRQEMVREIYFKENCDLLIHGHVHW 150
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 25.0 bits (53), Expect = 8.6
Identities = 11/84 (13%), Positives = 20/84 (23%), Gaps = 2/84 (2%)
Query: 85 CHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALL 144
P P + DG E G + G + A
Sbjct: 140 TLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATF 199
Query: 145 QR--QLDVDILISGHTHKFEAYEH 166
+ + +D+L+ H +
Sbjct: 200 AKAKAMKIDVLLGPHPEVYGMQAK 223
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 337
Score = 24.9 bits (53), Expect = 8.8
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 141 LALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPKV 188
+A + +++ GH+ ENK ++ T + +
Sbjct: 211 MARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGI 258
>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 232
Score = 24.7 bits (53), Expect = 9.4
Identities = 10/96 (10%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 82 IGLCHGHDIIPWGDPEALALLQRQLDGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEAL 141
+G+ +G + + D + + Q+ G + + D
Sbjct: 87 LGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQG--DCSDLTTF 144
Query: 142 -ALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 176
L + + + + H + F + + G
Sbjct: 145 EHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGD 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.429
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 901,626
Number of extensions: 43373
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 31
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)