BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1086
(654 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 169/343 (49%), Gaps = 60/343 (17%)
Query: 43 FLDSLSLYVKGGSGGNG-----QPKYXXXXXXXXN-------VVCKVKAG-ASLESV--K 87
F+D + +YVKGG GGNG + KY VV +V G +L K
Sbjct: 2 FVDQVKVYVKGGDGGNGXVAFRREKYVPKGGPAGGDGGKGGDVVFEVDEGLRTLXDFRYK 61
Query: 88 KQFKGVRITAASGDNSLVHRLAGRNGEDKILELPVGITAYADGGTK--LGELNTEEDSXX 145
K FK +R G++ GRN +D ++++P G T D TK + +L
Sbjct: 62 KHFKAIR-----GEHGXSKNQHGRNADDXVIKVPPG-TVVTDDDTKQVIADLTEHGQRAV 115
Query: 146 XXXXXXXXXXXXXWL------------GRKGEELAVRLELKLIADIGLVGFPNAGKSTFL 193
+ G G+E + LELK++AD+GLVGFP+ GKST L
Sbjct: 116 IARGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLL 175
Query: 194 KAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 253
+S A+PKIA Y FTT+ PN+G + DD R ADLPGLIEGAH+ +G+GHQFLRH+E
Sbjct: 176 SVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGAHQGVGLGHQFLRHIE 235
Query: 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 313
RT++I ++D +G + R + L +N+EL Y + L E+P I++ NK D A
Sbjct: 236 RTRVIVHVIDXSGLE------GRDPYDDYLTINQELSEYNLRLTERPQIIVANKXDXPEA 289
Query: 314 QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT 356
E + ++ L + YP + PISA T
Sbjct: 290 AENLEAFKEKLTD------DYP-------------VFPISAVT 313
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 25/196 (12%)
Query: 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF 468
G G+E + LELK++AD+GLVGFP+ GKST L +S A+PKIA Y FTT+ PN+G +
Sbjct: 143 GEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVET 202
Query: 469 DDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVE 528
DD R ADLPGLIEGAH+ +G+GHQFLRH+ERT++I ++D +G + R +
Sbjct: 203 DDGRSFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDXSGLE------GRDPYD 256
Query: 529 TVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQP 588
L +N+EL Y + L E+P I++ NK D A E + ++ L + YP
Sbjct: 257 DYLTINQELSEYNLRLTERPQIIVANKXDXPEAAENLEAFKEKLTD------DYP----- 305
Query: 589 EKVIKFQSILPISAKT 604
+ PISA T
Sbjct: 306 --------VFPISAVT 313
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 150/291 (51%), Gaps = 34/291 (11%)
Query: 43 FLDSLSLYVKGGSGGNGQ---------PKYXXXXXXXXNVVC-KVKAGASLESVKKQFKG 92
F D L + V G GG+G PK ++A S++S+ + K
Sbjct: 2 FQDVLVITVAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGGSVYLRARGSVDSLSRLSKR 61
Query: 93 VRITAASGDNSLVHRLAGRNGEDKILELPVGITAY-ADGGTKLGELNTEEDSXXXXXXXX 151
A G++ + GR GED ++E+P G + AD G L +L E +
Sbjct: 62 T-YKAEDGEHGRGSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGA 120
Query: 152 XXXXXXXWL------------GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 199
++ G +GE+ +RLEL LIAD+GLVG+PNAGKS+ L A++RA
Sbjct: 121 GGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180
Query: 200 RPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIA 259
PKIA YPFTT+ PN+GV+ + + ++AD+PG+IEGA G+G +FLRH+ RT+++
Sbjct: 181 HPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLL 240
Query: 260 MIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDV 310
++D L +T+ L KE+ Y LL +P ++ +NK+D+
Sbjct: 241 YVLDAADEPL----------KTLETLRKEVGAYDPALLRRPSLVALNKVDL 281
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 101/150 (67%), Gaps = 10/150 (6%)
Query: 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF 468
G +GE+ +RLEL LIAD+GLVG+PNAGKS+ L A++RA PKIA YPFTT+ PN+GV+
Sbjct: 142 GEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV 201
Query: 469 DDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVE 528
+ + ++AD+PG+IEGA G+G +FLRH+ RT+++ ++D L +
Sbjct: 202 SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPL----------K 251
Query: 529 TVLLLNKELELYKMNLLEKPIILLVNKMDV 558
T+ L KE+ Y LL +P ++ +NK+D+
Sbjct: 252 TLETLRKEVGAYDPALLRRPSLVALNKVDL 281
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 224
+G+VG PN GKST A++RA A+YPF TI NVGV+ +D R
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 225 ------KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 262
+ D+ GL++GAH+ G+G+QFL H+ IA ++
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 472
+G+VG PN GKST A++RA A+YPF TI NVGV+ +D R
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 473 ------KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 510
+ D+ GL++GAH+ G+G+QFL H+ IA ++
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 224
+G+VG PN GKST A++RA A+YPF TI NVGV+ +D R
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 225 ------KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 262
+ D+ GL++GAH+ G+G+QFL H+ IA ++
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 472
+G+VG PN GKST A++RA A+YPF TI NVGV+ +D R
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 473 ------KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 510
+ D+ GL++GAH+ G+G+QFL H+ IA ++
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 16/99 (16%)
Query: 180 GLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR--------------- 224
G+VG PN GKST A+++A + A+YPF TI+PN GV+ D R
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILP 65
Query: 225 -KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 262
M D+ GL+ GA + G+G++FL ++ T I +V
Sbjct: 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVV 104
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 16/99 (16%)
Query: 428 GLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR--------------- 472
G+VG PN GKST A+++A + A+YPF TI+PN GV+ D R
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILP 65
Query: 473 -KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 510
M D+ GL+ GA + G+G++FL ++ T I +V
Sbjct: 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVV 104
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 25/147 (17%)
Query: 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGV---ITFDDFRKMSVA----- 229
+IG+VG PN GKSTF A + +IA+YPFTTI+ NVGV IT +++ +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 230 ---------------DLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHP 274
D+ GL+ GAH G+G++FL + + +VD G P
Sbjct: 62 YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDPEGQP 121
Query: 275 K--RSCVETVLLLNKELELYKMNLLEK 299
VE + L +E++ + +L K
Sbjct: 122 TDYHDPVEDIEFLEREIDYWIYGILSK 148
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 25/147 (17%)
Query: 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGV---ITFDDFRKMSVA----- 477
+IG+VG PN GKSTF A + +IA+YPFTTI+ NVGV IT +++ +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 478 ---------------DLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHP 522
D+ GL+ GAH G+G++FL + + +VD G P
Sbjct: 62 YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDPEGQP 121
Query: 523 K--RSCVETVLLLNKELELYKMNLLEK 547
VE + L +E++ + +L K
Sbjct: 122 TDYHDPVEDIEFLEREIDYWIYGILSK 148
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 235
+A +G VGFP+ GKST L ++ + A Y FTT+ GVI + K+ + DLPG+I
Sbjct: 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG-AKIQMLDLPGII 130
Query: 236 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 295
+GA G G Q + L+ +I+DVN L H + ++ KELE +
Sbjct: 131 DGAKDGRGRGKQVIAVARTCNLLFIILDVNK---PLHHKQ--------IIEKELEGVGIR 179
Query: 296 LLEKPIILLVNK 307
L + P +L+ K
Sbjct: 180 LNKTPPDILIKK 191
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483
+A +G VGFP+ GKST L ++ + A Y FTT+ GVI + K+ + DLPG+I
Sbjct: 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG-AKIQMLDLPGII 130
Query: 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 543
+GA G G Q + L+ +I+DVN L H + ++ KELE +
Sbjct: 131 DGAKDGRGRGKQVIAVARTCNLLFIILDVNK---PLHHKQ--------IIEKELEGVGIR 179
Query: 544 LLEKPIILLVNK 555
L + P +L+ K
Sbjct: 180 LNKTPPDILIKK 191
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 16/90 (17%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 224
IG+VG PN GKSTF ++ ++ ++PF TI PN + D R
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 225 --KMSVADLPGLIEGAHRNLGMGHQFLRHV 252
++V D+ GL++GAH G+G+ FL H+
Sbjct: 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHI 114
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 16/90 (17%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 472
IG+VG PN GKSTF ++ ++ ++PF TI PN + D R
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 473 --KMSVADLPGLIEGAHRNLGMGHQFLRHV 500
++V D+ GL++GAH G+G+ FL H+
Sbjct: 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHI 114
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 19/146 (13%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 235
I + + G PN GKST LKA++ A+P+IASYPFTT NVG D + + + D PGL+
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFE-DGYFRYQIIDTPGLL 225
Query: 236 EG--AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK 293
+ + RN +E+ ++A+ + + + P C L +++ L++
Sbjct: 226 DRPISERN---------EIEKQAILALRY-LGNLIIYIFDPSEHC---GFPLEEQIHLFE 272
Query: 294 M---NLLEKPIILLVNKMDVEGAQEI 316
+ P ++++NK+DV + I
Sbjct: 273 EVHGEFKDLPFLVVINKIDVADEENI 298
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 19/146 (13%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483
I + + G PN GKST LKA++ A+P+IASYPFTT NVG D + + + D PGL+
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFE-DGYFRYQIIDTPGLL 225
Query: 484 EG--AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK 541
+ + RN +E+ ++A+ + + + P C L +++ L++
Sbjct: 226 DRPISERN---------EIEKQAILALRY-LGNLIIYIFDPSEHC---GFPLEEQIHLFE 272
Query: 542 M---NLLEKPIILLVNKMDVEGAQEI 564
+ P ++++NK+DV + I
Sbjct: 273 EVHGEFKDLPFLVVINKIDVADEENI 298
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 21/102 (20%)
Query: 180 GLVGFPNAGKSTFLKAISRA---RPKIASYPFTTIKPNVGVITFDDFRK----------- 225
G+VG PN GKSTF +AI+++ P A+YP+ TI P + D R
Sbjct: 24 GIVGXPNVGKSTFFRAITKSVLGNP--ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
Query: 226 -----MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 262
++V D+ GL +GA +G+G+ FL HV I +V
Sbjct: 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 21/102 (20%)
Query: 428 GLVGFPNAGKSTFLKAISRA---RPKIASYPFTTIKPNVGVITFDDFRK----------- 473
G+VG PN GKSTF +AI+++ P A+YP+ TI P + D R
Sbjct: 24 GIVGXPNVGKSTFFRAITKSVLGNP--ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
Query: 474 -----MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 510
++V D+ GL +GA +G+G+ FL HV I +V
Sbjct: 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD-DFRKMSVADLPGLIEG 237
I L G PN GKS+F+ +SRA + SY FTT N+ V FD K + D PGL++
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT--KNLYVGHFDHKLNKYQIIDTPGLLDR 89
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY---KM 294
A N R+ I + +NG L + C T+ +++ L+ K
Sbjct: 90 AFEN--------RNTIEMTTITALAHINGVILFIIDISEQCGLTI---KEQINLFYSIKS 138
Query: 295 NLLEKPIILLVNKMD 309
K I++ NK+D
Sbjct: 139 VFSNKSIVIGFNKID 153
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD-DFRKMSVADLPGLIEG 485
I L G PN GKS+F+ +SRA + SY FTT N+ V FD K + D PGL++
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT--KNLYVGHFDHKLNKYQIIDTPGLLDR 89
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY---KM 542
A N R+ I + +NG L + C T+ +++ L+ K
Sbjct: 90 AFEN--------RNTIEMTTITALAHINGVILFIIDISEQCGLTI---KEQINLFYSIKS 138
Query: 543 NLLEKPIILLVNKMD 557
K I++ NK+D
Sbjct: 139 VFSNKSIVIGFNKID 153
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 175 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 234
++ + LVG PN GK+T A++ R + ++P T++ G++ + + ++ V DLPG+
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGI 60
Query: 235 IEGAHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY 292
++ + F+ +I IVD +C+ L L LEL+
Sbjct: 61 YSLTAHSIDELIARNFILD-GNADVIVDIVD------------STCLMRNLFLT--LELF 105
Query: 293 KMNLLEKPIILLVNKMDV 310
+M + K IIL++NK D+
Sbjct: 106 EMEV--KNIILVLNKFDL 121
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482
++ + LVG PN GK+T A++ R + ++P T++ G++ + + ++ V DLPG+
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGI 60
Query: 483 IEGAHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY 540
++ + F+ +I IVD +C+ L L LEL+
Sbjct: 61 YSLTAHSIDELIARNFILD-GNADVIVDIVD------------STCLMRNLFLT--LELF 105
Query: 541 KMNLLEKPIILLVNKMDV 558
+M + K IIL++NK D+
Sbjct: 106 EMEV--KNIILVLNKFDL 121
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 233
+ + L G PN GK++ A++ + +A++P T++ GV T+ + +++ DLPG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGY-TINLIDLPG 61
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 481
+ + L G PN GK++ A++ + +A++P T++ GV T+ + +++ DLPG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGY-TINLIDLPG 61
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 233
+ L G PN GK++ A++ + +A++P T++ GV T+ + +++ DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYT-INLIDLPG 61
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 481
+ L G PN GK++ A++ + +A++P T++ GV T+ + +++ DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYT-INLIDLPG 61
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 233
+ L G PN GK++ A++ + +A++P T++ GV T+ + +++ DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGY-TINLIDLPG 61
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 481
+ L G PN GK++ A++ + +A++P T++ GV T+ + +++ DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGY-TINLIDLPG 61
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 233
+GL+G PN+GK+T ++ AR ++ ++ T++ G+ D ++++ DLPG
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTD-HQVTLVDLPG 59
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 481
+GL+G PN+GK+T ++ AR ++ ++ T++ G+ D ++++ DLPG
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTD-HQVTLVDLPG 59
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+I L+G PN GKST A++ I ++P T++ G ++ K V DLPG+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSL 64
Query: 238 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGL 271
++ + ++ + E+ L+ IVD + L
Sbjct: 65 TANSIDEIIARDYIIN-EKPDLVVNIVDATALERNL 99
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+I L+G PN GKST A++ I ++P T++ G ++ K V DLPG+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSL 64
Query: 486 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGL 519
++ + ++ + E+ L+ IVD + L
Sbjct: 65 TANSIDEIIARDYIIN-EKPDLVVNIVDATALERNL 99
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+I L+G PN GKST A++ I ++P T++ G ++ K V DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSL 63
Query: 238 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGL 271
++ + ++ + E+ L+ IVD + L
Sbjct: 64 TANSIDEIIARDYIIN-EKPDLVVNIVDATALERNL 98
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+I L+G PN GKST A++ I ++P T++ G ++ K V DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSL 63
Query: 486 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGL 519
++ + ++ + E+ L+ IVD + L
Sbjct: 64 TANSIDEIIARDYIIN-EKPDLVVNIVDATALERNL 98
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+I L+G PN GKST A++ I ++P T++ G ++ K V DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSL 63
Query: 238 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGL 271
++ + ++ + E+ L+ IVD + L
Sbjct: 64 TANSIDEIIARDYIIN-EKPDLVVNIVDATALERNL 98
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+I L+G PN GKST A++ I ++P T++ G ++ K V DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSL 63
Query: 486 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGL 519
++ + ++ + E+ L+ IVD + L
Sbjct: 64 TANSIDEIIARDYIIN-EKPDLVVNIVDATALERNL 98
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+I L+G PN GKST A++ I ++P T++ G ++ K V DLPG+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSL 67
Query: 238 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGL 271
++ + ++ + E+ L+ IVD + L
Sbjct: 68 TANSIDEIIARDYIIN-EKPDLVVNIVDATALERNL 102
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+I L+G PN GKST A++ I ++P T++ G ++ K V DLPG+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSL 67
Query: 486 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGL 519
++ + ++ + E+ L+ IVD + L
Sbjct: 68 TANSIDEIIARDYIIN-EKPDLVVNIVDATALERNL 102
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 235
I IG+VG+ N+GK++ +++ K+ + FTT+ P I ++ RK+ + D G I
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFI 237
Query: 236 EG 237
G
Sbjct: 238 RG 239
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483
I IG+VG+ N+GK++ +++ K+ + FTT+ P I ++ RK+ + D G I
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFI 237
Query: 484 EG 485
G
Sbjct: 238 RG 239
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 234
L+G PN GK+T A++ A ++ ++P T++ G + + + DLPG+
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGV 58
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482
L+G PN GK+T A++ A ++ ++P T++ G + + + DLPG+
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGV 58
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 233
IGL+G PN+GK+T ++ +R ++ ++ T++ G + D ++++ DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPG 59
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 481
IGL+G PN+GK+T ++ +R ++ ++ T++ G + D ++++ DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPG 59
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 233
IGL+G PN+GK+T ++ +R ++ ++ T++ G + D ++++ DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPG 59
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 481
IGL+G PN+GK+T ++ +R ++ ++ T++ G + D ++++ DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 233
IGL+G PN+GK+T ++ +R ++ ++ T++ G + D ++++ DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPG 59
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG 481
IGL+G PN+GK+T ++ +R ++ ++ T++ G + D ++++ DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPG 59
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 43/185 (23%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV-GVITFDDFRKMSVADLPGLIEG 237
+ +VG PN GKST L + + I S T + V GV + ++ D PG+ E
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 238 AHRNLGMGHQFL----RHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELY 292
++ +GH + + +E +I ++D G++ ++ E+Y
Sbjct: 73 KKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWR-----------------PRDEEIY 114
Query: 293 K--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH-KYPEEFQPEKVIKFQSI 349
+ + L KP+I+++NK+D G + + L D IH K+PE I
Sbjct: 115 QNFIKPLNKPVIVVINKIDKIGPAK-------NVLPLIDEIHKKHPE---------LTEI 158
Query: 350 LPISA 354
+PISA
Sbjct: 159 VPISA 163
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 43/185 (23%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV-GVITFDDFRKMSVADLPGLIEG 485
+ +VG PN GKST L + + I S T + V GV + ++ D PG+ E
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 486 AHRNLGMGHQFL----RHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELY 540
++ +GH + + +E +I ++D G++ ++ E+Y
Sbjct: 73 KKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWR-----------------PRDEEIY 114
Query: 541 K--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH-KYPEEFQPEKVIKFQSI 597
+ + L KP+I+++NK+D G + + L D IH K+PE I
Sbjct: 115 QNFIKPLNKPVIVVINKIDKIGPAK-------NVLPLIDEIHKKHPE---------LTEI 158
Query: 598 LPISA 602
+PISA
Sbjct: 159 VPISA 163
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 179 IGLVGFPNAGKSTFLKAISRAR-PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+ +VG PN GKST L + + I+ P TT K G++T + R++ D PGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-EGRRQIVFVDTPGL--- 65
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNG--FQLGLKHPKRSCVETVLLLNKELELYKMN 295
H+ + +F+ ++ + DVN + + L+HP E V K L
Sbjct: 66 -HKPMDALGEFMDQ----EVYEALADVNAVVWVVDLRHPPTPEDELVARALKPL------ 114
Query: 296 LLEKPIILLVNKMD 309
+ + PI+L+ NK+D
Sbjct: 115 VGKVPILLVGNKLD 128
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 427 IGLVGFPNAGKSTFLKAISRAR-PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+ +VG PN GKST L + + I+ P TT K G++T + R++ D PGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-EGRRQIVFVDTPGL--- 65
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNG--FQLGLKHPKRSCVETVLLLNKELELYKMN 543
H+ + +F+ ++ + DVN + + L+HP E V K L
Sbjct: 66 -HKPMDALGEFMDQ----EVYEALADVNAVVWVVDLRHPPTPEDELVARALKPL------ 114
Query: 544 LLEKPIILLVNKMD 557
+ + PI+L+ NK+D
Sbjct: 115 VGKVPILLVGNKLD 128
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 43/185 (23%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV-GVITFDDFRKMSVADLPGLIEG 237
+ +VG PN GKST L + + I S T + V GV + ++ D PG+ E
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 238 AHRNLGMGHQFL----RHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELY 292
++ +GH + + +E +I ++D G++ ++ E+Y
Sbjct: 72 KKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWR-----------------PRDEEIY 113
Query: 293 K--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH-KYPEEFQPEKVIKFQSI 349
+ + L KP+I+++NK+D G + + L D IH K+PE I
Sbjct: 114 QNFIKPLNKPVIVVINKIDKIGPAK-------NVLPLIDEIHKKHPE---------LTEI 157
Query: 350 LPISA 354
+PISA
Sbjct: 158 VPISA 162
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 43/185 (23%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV-GVITFDDFRKMSVADLPGLIEG 485
+ +VG PN GKST L + + I S T + V GV + ++ D PG+ E
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 486 AHRNLGMGHQFL----RHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELY 540
++ +GH + + +E +I ++D G++ ++ E+Y
Sbjct: 72 KKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWR-----------------PRDEEIY 113
Query: 541 K--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH-KYPEEFQPEKVIKFQSI 597
+ + L KP+I+++NK+D G + + L D IH K+PE I
Sbjct: 114 QNFIKPLNKPVIVVINKIDKIGPAK-------NVLPLIDEIHKKHPE---------LTEI 157
Query: 598 LPISA 602
+PISA
Sbjct: 158 VPISA 162
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 235
I IG+VG+ N+GK++ +++ K+ + FTT+ P I ++ RK+ + D I
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVSFI 237
Query: 236 EG 237
G
Sbjct: 238 RG 239
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483
I IG+VG+ N+GK++ +++ K+ + FTT+ P I ++ RK+ + D I
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVSFI 237
Query: 484 EG 485
G
Sbjct: 238 RG 239
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 234
+ +I L+G PN+GK++ I+ ++ ++P T++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGI 59
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482
+ +I L+G PN+GK++ I+ ++ ++P T++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGI 59
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 234
+ +I L+G PN+GK++ I+ ++ ++P T++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGI 59
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482
+ +I L+G PN+GK++ I+ ++ ++P T++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGI 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 234
+ +I L+G PN+GK++ I+ ++ ++P T++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGI 59
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482
+ +I L+G PN+GK++ I+ ++ ++P T++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGI 59
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 160 LGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVI 218
L KG +L + E+ + +VG PN GKST AI ++ R ++ P TT P V
Sbjct: 164 LEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP-VDDE 222
Query: 219 TFDDFRKMSVADLPGL-----IEGAHRNLGMGHQFLRHVERTKLIAMIVD 263
F D RK D GL +E ++ + +E+ ++ +++D
Sbjct: 223 VFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLD 272
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 408 LGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVI 466
L KG +L + E+ + +VG PN GKST AI ++ R ++ P TT P V
Sbjct: 164 LEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP-VDDE 222
Query: 467 TFDDFRKMSVADLPGL-----IEGAHRNLGMGHQFLRHVERTKLIAMIVD 511
F D RK D GL +E ++ + +E+ ++ +++D
Sbjct: 223 VFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLD 272
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 235
I IG+VG+ N+GK++ +++ K+ + FTT+ P I ++ RK+ + D I
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVPFI 237
Query: 236 EG 237
G
Sbjct: 238 RG 239
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483
I IG+VG+ N+GK++ +++ K+ + FTT+ P I ++ RK+ + D I
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVPFI 237
Query: 484 EG 485
G
Sbjct: 238 RG 239
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 234
+ +I L+G PN+GK++ I+ ++ ++P +++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKN--KDLEIQDLPGI 59
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482
+ +I L+G PN+GK++ I+ ++ ++P +++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKN--KDLEIQDLPGI 59
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 234
+ +I L+G PN+GK++ I+ ++ ++P ++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKN--KDLEIQDLPGI 59
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482
+ +I L+G PN+GK++ I+ ++ ++P ++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKN--KDLEIQDLPGI 59
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 234
+ +I L+G P +GK++ I+ ++ ++P T++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGI 59
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482
+ +I L+G P +GK++ I+ ++ ++P T++ G++ + + + + DLPG+
Sbjct: 3 MTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGI 59
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 43/192 (22%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIA-SYPFTT---IKPNVGVITFDDFRKMSVADLPGL 234
+ +VG PN GKST I+ R I P T I + + +D ++ D G+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD----FNLIDTGGI 81
Query: 235 IEGAHRNLGMGHQFLRHVERTKLIAMI-VDVNGFQLGLKHPKRSCVETVLLLNKELELYK 293
G FL + + IAM DV F + + + E V + LY+
Sbjct: 82 DIG-------DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKI-----LYR 129
Query: 294 MNLLEKPIILLVNKMD-VEGAQEIYD------------------GIRDTLHNLKDHIHKY 334
+KP++L VNK+D E IYD G+ D L + +H
Sbjct: 130 T---KKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI 186
Query: 335 PEEFQPEKVIKF 346
PE E+VI+F
Sbjct: 187 PETKYNEEVIQF 198
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 43/192 (22%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIA-SYPFTT---IKPNVGVITFDDFRKMSVADLPGL 482
+ +VG PN GKST I+ R I P T I + + +D ++ D G+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD----FNLIDTGGI 81
Query: 483 IEGAHRNLGMGHQFLRHVERTKLIAMI-VDVNGFQLGLKHPKRSCVETVLLLNKELELYK 541
G FL + + IAM DV F + + + E V + LY+
Sbjct: 82 DIG-------DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKI-----LYR 129
Query: 542 MNLLEKPIILLVNKMD-VEGAQEIYD------------------GIRDTLHNLKDHIHKY 582
+KP++L VNK+D E IYD G+ D L + +H
Sbjct: 130 T---KKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI 186
Query: 583 PEEFQPEKVIKF 594
PE E+VI+F
Sbjct: 187 PETKYNEEVIQF 198
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 36/181 (19%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN-VGVITFDDFRKMSVADLPGLIEG 237
I +VG PN GKST L + + I S T + VG+ T ++ + V D PGL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 66
Query: 238 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 295
R + M + +L+ +V+ T + E+ L K+
Sbjct: 67 EKRAINRLMNKAASSSIGDVELVIFVVE----------------GTRWTPDDEMVLNKLR 110
Query: 296 LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK 355
+ P+IL VNK+D QE D L H+ + + F I+PISA+
Sbjct: 111 EGKAPVILAVNKVD--NVQEKAD--------LLPHLQFLASQ------MNFLDIVPISAE 154
Query: 356 T 356
T
Sbjct: 155 T 155
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 36/181 (19%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN-VGVITFDDFRKMSVADLPGLIEG 485
I +VG PN GKST L + + I S T + VG+ T ++ + V D PGL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 66
Query: 486 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 543
R + M + +L+ +V+ T + E+ L K+
Sbjct: 67 EKRAINRLMNKAASSSIGDVELVIFVVE----------------GTRWTPDDEMVLNKLR 110
Query: 544 LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK 603
+ P+IL VNK+D QE D L H+ + + F I+PISA+
Sbjct: 111 EGKAPVILAVNKVD--NVQEKAD--------LLPHLQFLASQ------MNFLDIVPISAE 154
Query: 604 T 604
T
Sbjct: 155 T 155
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 36/181 (19%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN-VGVITFDDFRKMSVADLPGLIEG 237
I +VG PN GKST L + + I S T + VG+ T ++ + V D PGL
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69
Query: 238 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 295
R + M + +L+ +V+ T + E+ L K+
Sbjct: 70 EKRAINRLMNKAASSSIGDVELVIFVVE----------------GTRWTPDDEMVLNKLR 113
Query: 296 LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK 355
+ P+IL VNK+D QE D L H+ + + F I+PISA+
Sbjct: 114 EGKAPVILAVNKVD--NVQEKAD--------LLPHLQFLASQ------MNFLDIVPISAE 157
Query: 356 T 356
T
Sbjct: 158 T 158
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 36/181 (19%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN-VGVITFDDFRKMSVADLPGLIEG 485
I +VG PN GKST L + + I S T + VG+ T ++ + V D PGL
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69
Query: 486 AHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 543
R + M + +L+ +V+ T + E+ L K+
Sbjct: 70 EKRAINRLMNKAASSSIGDVELVIFVVE----------------GTRWTPDDEMVLNKLR 113
Query: 544 LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK 603
+ P+IL VNK+D QE D L H+ + + F I+PISA+
Sbjct: 114 EGKAPVILAVNKVD--NVQEKAD--------LLPHLQFLASQ------MNFLDIVPISAE 157
Query: 604 T 604
T
Sbjct: 158 T 158
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 57/199 (28%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIA-SYPFTT---IKPNVGVITFDDFRKMSVADLPGL 234
+ +VG PN GKST I+ R I P T I + + +D ++ D G+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD----FNLIDTGGI 61
Query: 235 IEGAHRNLGMGHQFLRHVERTKLIA------MIVDVNGFQLGLKHPKRSCVETVLLLNKE 288
G FL + + IA +I VNG E V ++E
Sbjct: 62 DIG-------DEPFLAQIRQQAEIAXDEADVIIFXVNG------------REGVTAADEE 102
Query: 289 LE--LYKMNLLEKPIILLVNKMD-VEGAQEIYD------------------GIRDTLHNL 327
+ LY+ +KP++L VNK+D E IYD G+ D L +
Sbjct: 103 VAKILYRT---KKPVVLAVNKLDNTEXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 159
Query: 328 KDHIHKYPEEFQPEKVIKF 346
+H PE E+VI+F
Sbjct: 160 AEHFKNIPETKYNEEVIQF 178
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 57/199 (28%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIA-SYPFTT---IKPNVGVITFDDFRKMSVADLPGL 482
+ +VG PN GKST I+ R I P T I + + +D ++ D G+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD----FNLIDTGGI 61
Query: 483 IEGAHRNLGMGHQFLRHVERTKLIA------MIVDVNGFQLGLKHPKRSCVETVLLLNKE 536
G FL + + IA +I VNG E V ++E
Sbjct: 62 DIG-------DEPFLAQIRQQAEIAXDEADVIIFXVNG------------REGVTAADEE 102
Query: 537 LE--LYKMNLLEKPIILLVNKMD-VEGAQEIYD------------------GIRDTLHNL 575
+ LY+ +KP++L VNK+D E IYD G+ D L +
Sbjct: 103 VAKILYRT---KKPVVLAVNKLDNTEXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 159
Query: 576 KDHIHKYPEEFQPEKVIKF 594
+H PE E+VI+F
Sbjct: 160 AEHFKNIPETKYNEEVIQF 178
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 23/82 (28%)
Query: 180 GLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF---------DDFRKMSVAD 230
GL+G AGK+T L+ IS T IKP+ G++T + RK+ ++
Sbjct: 45 GLIGPNGAGKTTTLRIIS-----------TLIKPSSGIVTVFGKNVVEEPHEVRKL-ISY 92
Query: 231 LPGLIEGAHRNLGMGHQFLRHV 252
LP GA+RN+ G ++LR V
Sbjct: 93 LPEE-AGAYRNM-QGIEYLRFV 112
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 23/82 (28%)
Query: 428 GLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF---------DDFRKMSVAD 478
GL+G AGK+T L+ IS T IKP+ G++T + RK+ ++
Sbjct: 45 GLIGPNGAGKTTTLRIIS-----------TLIKPSSGIVTVFGKNVVEEPHEVRKL-ISY 92
Query: 479 LPGLIEGAHRNLGMGHQFLRHV 500
LP GA+RN+ G ++LR V
Sbjct: 93 LPEE-AGAYRNM-QGIEYLRFV 112
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 22/135 (16%)
Query: 179 IGLVGFPNAGKSTFLKAISRA-RPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+ +VG PN GKS+ L A S++ R + P TT + + V D G+ E
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI-PVQVLDTAGIRET 285
Query: 238 AHRNLGMGHQFLRHVERTK-LIAMIVD-VNGFQLGLKHPKRSCVETVLLLNKELELYKMN 295
+ + +G + R T L+ + +D G+ G + E+Y+
Sbjct: 286 SDQVEKIGVERSRQAANTADLVLLTIDAATGWTTG-----------------DQEIYE-Q 327
Query: 296 LLEKPIILLVNKMDV 310
+ +P+IL++NK+D+
Sbjct: 328 VKHRPLILVMNKIDL 342
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 22/135 (16%)
Query: 427 IGLVGFPNAGKSTFLKAISRA-RPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+ +VG PN GKS+ L A S++ R + P TT + + V D G+ E
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI-PVQVLDTAGIRET 285
Query: 486 AHRNLGMGHQFLRHVERTK-LIAMIVD-VNGFQLGLKHPKRSCVETVLLLNKELELYKMN 543
+ + +G + R T L+ + +D G+ G + E+Y+
Sbjct: 286 SDQVEKIGVERSRQAANTADLVLLTIDAATGWTTG-----------------DQEIYE-Q 327
Query: 544 LLEKPIILLVNKMDV 558
+ +P+IL++NK+D+
Sbjct: 328 VKHRPLILVMNKIDL 342
>pdb|1L76|A Chain A, Tolerance Of T4 Lysozyme To Proline Substitutions Within
The Long Interdomain Alpha-Helix Illustrates The
Adaptability Of Proteins To Potentially Destabilizing
Lesions
Length = 164
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 186 NAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG 245
NA KS KAI R GVIT D+ K+ D+P + G RN +
Sbjct: 40 NAAKSELDKAIGR--------------NTNGVITKDEAEKLFNQDVPAAVRGILRNAKLK 85
Query: 246 --HQFLRHVERTKLIAMIVDVNGFQLG 270
+ L V R LI M+ FQ+G
Sbjct: 86 PVYDSLDAVRRAALINMV-----FQMG 107
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 434 NAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG 493
NA KS KAI R GVIT D+ K+ D+P + G RN +
Sbjct: 40 NAAKSELDKAIGR--------------NTNGVITKDEAEKLFNQDVPAAVRGILRNAKLK 85
Query: 494 --HQFLRHVERTKLIAMIVDVNGFQLG 518
+ L V R LI M+ FQ+G
Sbjct: 86 PVYDSLDAVRRAALINMV-----FQMG 107
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 55/193 (28%)
Query: 178 DIGLVGFPNAGKSTFLK-----AISRARPKIASYPFTTIKPNVGVITF--DDFRKMSVAD 230
++G+ G + GK+T K A + A K+ I ++G F +++R +++ D
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR-ITLVD 79
Query: 231 LPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH-PKRSCVETVLLLNKEL 289
PG H +L +R V A I+D+ + K PK E +L+L+
Sbjct: 80 APG-----HADL------IRAVVSA---ADIIDLALIVVDAKEGPKTQTGEHMLILDH-- 123
Query: 290 ELYKMNLLEKPIILLVNKMDVEGAQE------IYDGIRDTLHNLKDHIHKYPEEFQPEKV 343
PII+++ K D G +E I I + HNLK+
Sbjct: 124 -------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN-------------- 162
Query: 344 IKFQSILPISAKT 356
SI+PISAKT
Sbjct: 163 ---SSIIPISAKT 172
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 55/193 (28%)
Query: 426 DIGLVGFPNAGKSTFLK-----AISRARPKIASYPFTTIKPNVGVITF--DDFRKMSVAD 478
++G+ G + GK+T K A + A K+ I ++G F +++R +++ D
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR-ITLVD 79
Query: 479 LPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH-PKRSCVETVLLLNKEL 537
PG H +L +R V A I+D+ + K PK E +L+L+
Sbjct: 80 APG-----HADL------IRAVVSA---ADIIDLALIVVDAKEGPKTQTGEHMLILDH-- 123
Query: 538 ELYKMNLLEKPIILLVNKMDVEGAQE------IYDGIRDTLHNLKDHIHKYPEEFQPEKV 591
PII+++ K D G +E I I + HNLK+
Sbjct: 124 -------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN-------------- 162
Query: 592 IKFQSILPISAKT 604
SI+PISAKT
Sbjct: 163 ---SSIIPISAKT 172
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 181 LVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 239
+VG PN GKS+ + + R +A P T GV+ D R + V D GL G
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLV-DTGGLWSGDK 64
Query: 240 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEK 299
+ + R +E +++ VD G ++ E L ++ K
Sbjct: 65 WEKKIQEKVDRALEDAEVVLFAVD------GRAELTQADYEVAEYLRRK---------GK 109
Query: 300 PIILLVNKMDVEGAQEIYDG 319
P+IL+ K+D + E+Y G
Sbjct: 110 PVILVATKVD-DPKHELYLG 128
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 429 LVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 487
+VG PN GKS+ + + R +A P T GV+ D R + V D GL G
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLV-DTGGLWSGDK 64
Query: 488 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEK 547
+ + R +E +++ VD G ++ E L ++ K
Sbjct: 65 WEKKIQEKVDRALEDAEVVLFAVD------GRAELTQADYEVAEYLRRK---------GK 109
Query: 548 PIILLVNKMDVEGAQEIYDG 567
P+IL+ K+D + E+Y G
Sbjct: 110 PVILVATKVD-DPKHELYLG 128
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIAS-YPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
I + G N GKS+F+ A+ I S Y TT P + +++ D PGL +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD- 95
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 297
+G VE+ + + D G + P + V+ L KE+E+
Sbjct: 96 ------VGELGRLRVEKARRVFYRADC-GILVTDSAPT-PYEDDVVNLFKEMEI------ 141
Query: 298 EKPIILLVNKMDVEGAQ 314
P +++VNK+DV G +
Sbjct: 142 --PFVVVVNKIDVLGEK 156
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIAS-YPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
I + G N GKS+F+ A+ I S Y TT P + +++ D PGL +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD- 95
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545
+G VE+ + + D G + P + V+ L KE+E+
Sbjct: 96 ------VGELGRLRVEKARRVFYRADC-GILVTDSAPT-PYEDDVVNLFKEMEI------ 141
Query: 546 EKPIILLVNKMDVEGAQ 562
P +++VNK+DV G +
Sbjct: 142 --PFVVVVNKIDVLGEK 156
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 295 NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSIL 350
N L+K I+L + E E+ G+ DT+ NL I EE P + SIL
Sbjct: 234 NALDKVIVLWT--ANTERYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASIL 287
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 543 NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSIL 598
N L+K I+L + E E+ G+ DT+ NL I EE P + SIL
Sbjct: 234 NALDKVIVLWT--ANTERYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASIL 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,295,363
Number of Sequences: 62578
Number of extensions: 703373
Number of successful extensions: 2008
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1870
Number of HSP's gapped (non-prelim): 122
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)