Query psy1086
Match_columns 654
No_of_seqs 616 out of 5167
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 20:17:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 9.1E-79 2E-83 603.4 30.1 310 41-376 1-336 (369)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 5.1E-66 1.1E-70 538.8 30.6 302 42-374 1-329 (335)
3 PRK12297 obgE GTPase CgtA; Rev 100.0 4.8E-66 1E-70 551.0 29.7 303 42-375 1-329 (424)
4 PRK12296 obgE GTPase CgtA; Rev 100.0 6.9E-66 1.5E-70 554.9 31.1 307 41-375 2-342 (500)
5 KOG1489|consensus 100.0 1.3E-65 2.9E-70 502.4 25.5 300 42-371 40-365 (366)
6 PRK12298 obgE GTPase CgtA; Rev 100.0 4.5E-65 9.7E-70 541.7 30.9 308 41-375 1-335 (390)
7 TIGR02729 Obg_CgtA Obg family 100.0 4.4E-64 9.5E-69 524.2 31.0 302 43-372 1-328 (329)
8 COG1160 Predicted GTPases [Gen 100.0 2E-42 4.3E-47 359.4 26.9 343 177-625 4-355 (444)
9 PRK03003 GTP-binding protein D 100.0 1.3E-35 2.9E-40 327.0 30.8 340 177-624 39-385 (472)
10 TIGR03594 GTPase_EngA ribosome 100.0 1.9E-35 4.1E-40 324.2 29.5 339 178-623 1-346 (429)
11 PF01018 GTP1_OBG: GTP1/OBG; 100.0 2.7E-37 5.7E-42 283.8 9.8 130 43-175 1-156 (156)
12 PRK00093 GTP-binding protein D 100.0 1E-33 2.2E-38 310.8 31.1 339 177-624 2-347 (435)
13 PRK09518 bifunctional cytidyla 100.0 1.2E-33 2.6E-38 325.4 30.6 347 171-623 270-623 (712)
14 KOG0084|consensus 99.9 1.3E-26 2.8E-31 214.1 15.4 162 425-622 10-173 (205)
15 KOG0092|consensus 99.9 4.7E-26 1E-30 209.6 14.0 162 425-622 6-168 (200)
16 KOG0078|consensus 99.9 5.9E-25 1.3E-29 206.4 16.9 163 424-622 12-175 (207)
17 PRK12299 obgE GTPase CgtA; Rev 99.9 2.6E-24 5.6E-29 225.2 22.7 188 408-622 142-329 (335)
18 KOG0094|consensus 99.9 6.8E-25 1.5E-29 201.5 15.2 164 425-623 23-187 (221)
19 KOG0098|consensus 99.9 2.3E-24 5E-29 196.3 15.2 161 425-621 7-168 (216)
20 KOG0394|consensus 99.9 1.9E-24 4.2E-29 196.6 12.9 168 424-624 9-181 (210)
21 TIGR02729 Obg_CgtA Obg family 99.9 5.9E-23 1.3E-27 214.9 22.4 187 409-620 142-328 (329)
22 PRK12298 obgE GTPase CgtA; Rev 99.9 9.5E-23 2.1E-27 217.5 22.1 194 409-625 144-337 (390)
23 PRK12297 obgE GTPase CgtA; Rev 99.9 1.3E-22 2.9E-27 217.3 21.7 188 409-624 143-330 (424)
24 PRK12296 obgE GTPase CgtA; Rev 99.9 1.2E-22 2.6E-27 219.9 21.5 192 408-624 143-343 (500)
25 KOG0087|consensus 99.9 1.7E-23 3.7E-28 195.3 12.8 160 425-620 15-175 (222)
26 cd04120 Rab12 Rab12 subfamily. 99.9 1.3E-22 2.8E-27 198.4 18.9 161 426-621 2-163 (202)
27 KOG0080|consensus 99.9 4E-23 8.7E-28 183.1 12.5 162 425-621 12-174 (209)
28 KOG1489|consensus 99.9 1.6E-22 3.5E-27 199.5 17.1 185 409-619 181-365 (366)
29 COG0536 Obg Predicted GTPase [ 99.9 2.6E-22 5.5E-27 200.8 18.7 193 409-624 144-336 (369)
30 KOG0086|consensus 99.9 1.6E-22 3.5E-27 177.6 15.1 161 425-621 10-171 (214)
31 KOG0091|consensus 99.9 1.2E-22 2.6E-27 180.6 13.9 163 426-622 10-174 (213)
32 KOG0093|consensus 99.9 1.7E-22 3.7E-27 176.5 13.8 166 425-626 22-188 (193)
33 KOG0095|consensus 99.9 2.5E-22 5.4E-27 175.6 14.6 159 425-619 8-167 (213)
34 cd04121 Rab40 Rab40 subfamily. 99.9 6.3E-22 1.4E-26 191.7 17.9 160 425-621 7-167 (189)
35 cd01898 Obg Obg subfamily. Th 99.9 1.1E-21 2.3E-26 186.9 18.7 167 426-619 2-169 (170)
36 KOG0079|consensus 99.9 4.1E-22 8.9E-27 174.2 12.5 163 425-624 9-172 (198)
37 cd04142 RRP22 RRP22 subfamily. 99.9 2.8E-21 6E-26 188.9 18.5 171 426-622 2-175 (198)
38 cd04109 Rab28 Rab28 subfamily. 99.9 2.6E-21 5.6E-26 192.0 18.1 163 426-622 2-167 (215)
39 cd04133 Rop_like Rop subfamily 99.9 2.4E-21 5.1E-26 185.6 16.9 159 425-620 2-172 (176)
40 cd04122 Rab14 Rab14 subfamily. 99.9 3.8E-21 8.3E-26 182.7 18.0 160 425-620 3-163 (166)
41 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3E-21 6.6E-26 189.5 16.7 164 426-622 2-169 (201)
42 cd04117 Rab15 Rab15 subfamily. 99.9 6.8E-21 1.5E-25 180.1 17.2 158 426-619 2-160 (161)
43 cd01865 Rab3 Rab3 subfamily. 99.9 8.5E-21 1.8E-25 180.1 17.7 160 425-620 2-162 (165)
44 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.1E-20 2.3E-25 179.5 18.2 161 425-621 3-164 (166)
45 cd04136 Rap_like Rap-like subf 99.9 9.8E-21 2.1E-25 178.9 17.8 160 425-620 2-162 (163)
46 cd01867 Rab8_Rab10_Rab13_like 99.9 1.1E-20 2.5E-25 179.6 18.0 161 425-621 4-165 (167)
47 cd04144 Ras2 Ras2 subfamily. 99.9 1E-20 2.2E-25 184.1 17.1 163 426-623 1-165 (190)
48 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.3E-20 2.8E-25 180.3 17.4 161 425-621 3-164 (172)
49 KOG0088|consensus 99.9 1.7E-21 3.7E-26 172.2 10.0 159 426-620 15-174 (218)
50 cd04127 Rab27A Rab27a subfamil 99.9 1.4E-20 3.1E-25 181.1 17.5 161 425-620 5-176 (180)
51 cd04131 Rnd Rnd subfamily. Th 99.9 8.3E-21 1.8E-25 182.4 15.5 157 426-619 3-174 (178)
52 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.2E-20 2.6E-25 181.8 16.3 158 425-619 6-178 (182)
53 cd04119 RJL RJL (RabJ-Like) su 99.9 2.4E-20 5.1E-25 176.9 18.0 161 426-620 2-166 (168)
54 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.2E-20 6.8E-25 177.2 18.3 163 426-623 2-167 (170)
55 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3.6E-20 7.8E-25 178.7 18.6 159 426-621 2-166 (182)
56 cd04140 ARHI_like ARHI subfami 99.8 3E-20 6.6E-25 176.3 17.5 160 425-619 2-163 (165)
57 cd01875 RhoG RhoG subfamily. 99.8 3E-20 6.5E-25 180.8 17.4 166 425-621 4-177 (191)
58 cd04112 Rab26 Rab26 subfamily. 99.8 2.5E-20 5.3E-25 181.5 16.7 167 426-628 2-170 (191)
59 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.5E-20 5.5E-25 185.4 17.0 160 425-621 14-188 (232)
60 cd01868 Rab11_like Rab11-like. 99.8 4.1E-20 8.9E-25 175.2 17.8 160 425-620 4-164 (165)
61 cd04175 Rap1 Rap1 subgroup. T 99.8 4.8E-20 1E-24 174.6 18.1 161 425-621 2-163 (164)
62 cd04176 Rap2 Rap2 subgroup. T 99.8 3.7E-20 7.9E-25 175.2 16.7 160 425-620 2-162 (163)
63 PTZ00369 Ras-like protein; Pro 99.8 6.1E-20 1.3E-24 178.4 18.5 161 425-621 6-167 (189)
64 smart00173 RAS Ras subfamily o 99.8 6.1E-20 1.3E-24 173.8 18.0 160 426-621 2-162 (164)
65 PLN03110 Rab GTPase; Provision 99.8 5.4E-20 1.2E-24 182.5 18.1 162 425-622 13-175 (216)
66 cd04145 M_R_Ras_like M-Ras/R-R 99.8 6E-20 1.3E-24 173.6 17.7 160 425-620 3-163 (164)
67 cd04126 Rab20 Rab20 subfamily. 99.8 5.3E-20 1.1E-24 182.0 17.9 172 426-623 2-192 (220)
68 cd04111 Rab39 Rab39 subfamily. 99.8 6.4E-20 1.4E-24 181.2 18.5 164 425-623 3-168 (211)
69 cd04116 Rab9 Rab9 subfamily. 99.8 6.5E-20 1.4E-24 174.8 17.7 161 425-619 6-169 (170)
70 KOG0083|consensus 99.8 1.8E-21 3.8E-26 167.2 6.0 159 429-623 2-162 (192)
71 cd04138 H_N_K_Ras_like H-Ras/N 99.8 7.6E-20 1.6E-24 172.3 17.8 159 425-620 2-161 (162)
72 cd00877 Ran Ran (Ras-related n 99.8 7.3E-20 1.6E-24 174.0 17.5 157 426-621 2-159 (166)
73 cd01861 Rab6 Rab6 subfamily. 99.8 6.7E-20 1.4E-24 172.9 16.9 158 426-619 2-160 (161)
74 cd04125 RabA_like RabA-like su 99.8 8.4E-20 1.8E-24 177.2 18.0 161 426-622 2-163 (188)
75 cd01864 Rab19 Rab19 subfamily. 99.8 6.5E-20 1.4E-24 173.9 16.9 160 425-619 4-164 (165)
76 cd01866 Rab2 Rab2 subfamily. 99.8 1.1E-19 2.3E-24 173.1 18.4 160 425-620 5-165 (168)
77 cd04148 RGK RGK subfamily. Th 99.8 9.7E-20 2.1E-24 181.2 18.7 188 426-650 2-200 (221)
78 cd04146 RERG_RasL11_like RERG/ 99.8 6.6E-20 1.4E-24 173.9 16.7 163 426-621 1-164 (165)
79 cd04106 Rab23_lke Rab23-like s 99.8 9.1E-20 2E-24 172.1 17.3 157 426-619 2-161 (162)
80 cd04110 Rab35 Rab35 subfamily. 99.8 1E-19 2.2E-24 178.3 18.1 160 425-621 7-167 (199)
81 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.1E-19 2.5E-24 173.3 17.8 163 425-621 3-169 (170)
82 cd01874 Cdc42 Cdc42 subfamily. 99.8 6.1E-20 1.3E-24 176.1 15.9 164 425-619 2-173 (175)
83 COG1163 DRG Predicted GTPase [ 99.8 6.6E-21 1.4E-25 189.1 9.2 171 178-374 65-290 (365)
84 PLN03071 GTP-binding nuclear p 99.8 8.7E-20 1.9E-24 181.3 17.2 158 425-621 14-172 (219)
85 TIGR03156 GTP_HflX GTP-binding 99.8 1.1E-19 2.5E-24 191.8 18.4 160 425-619 190-350 (351)
86 cd01881 Obg_like The Obg-like 99.8 8.9E-20 1.9E-24 174.5 16.0 170 429-619 1-175 (176)
87 cd04101 RabL4 RabL4 (Rab-like4 99.8 1.8E-19 4E-24 170.5 17.8 158 426-620 2-163 (164)
88 PF02421 FeoB_N: Ferrous iron 99.8 4E-20 8.6E-25 170.9 12.7 154 425-616 1-156 (156)
89 cd04113 Rab4 Rab4 subfamily. 99.8 1.5E-19 3.2E-24 170.6 17.0 158 426-619 2-160 (161)
90 TIGR00436 era GTP-binding prot 99.8 6.7E-20 1.4E-24 188.1 15.7 165 426-625 2-168 (270)
91 KOG0097|consensus 99.8 8.1E-20 1.8E-24 158.4 13.6 162 425-622 12-174 (215)
92 cd01897 NOG NOG1 is a nucleola 99.8 2.7E-19 5.8E-24 170.1 18.5 165 425-620 1-167 (168)
93 cd04134 Rho3 Rho3 subfamily. 99.8 1.1E-19 2.4E-24 176.6 16.1 165 426-621 2-174 (189)
94 PLN03108 Rab family protein; P 99.8 2.1E-19 4.5E-24 177.6 18.3 161 425-621 7-168 (210)
95 cd04124 RabL2 RabL2 subfamily. 99.8 4.8E-19 1E-23 167.4 19.2 155 426-620 2-157 (161)
96 cd01892 Miro2 Miro2 subfamily. 99.8 1.9E-19 4.1E-24 171.7 16.6 161 423-620 3-165 (169)
97 cd01871 Rac1_like Rac1-like su 99.8 1.5E-19 3.3E-24 173.1 16.0 164 425-619 2-173 (174)
98 cd04103 Centaurin_gamma Centau 99.8 2.1E-19 4.6E-24 169.2 16.7 153 426-619 2-157 (158)
99 cd04143 Rhes_like Rhes_like su 99.8 2.7E-19 5.8E-24 180.5 18.3 163 426-623 2-173 (247)
100 smart00176 RAN Ran (Ras-relate 99.8 2.1E-19 4.6E-24 175.4 16.7 154 430-622 1-155 (200)
101 KOG0081|consensus 99.8 5.1E-20 1.1E-24 163.0 10.4 162 425-621 10-181 (219)
102 COG1159 Era GTPase [General fu 99.8 1.9E-19 4.2E-24 178.5 15.1 171 425-628 7-179 (298)
103 smart00175 RAB Rab subfamily o 99.8 5.4E-19 1.2E-23 167.0 17.7 159 426-620 2-161 (164)
104 COG0488 Uup ATPase components 99.8 1.7E-19 3.7E-24 198.1 16.3 151 142-323 7-199 (530)
105 cd01873 RhoBTB RhoBTB subfamil 99.8 2.1E-19 4.6E-24 175.0 15.1 156 425-619 3-194 (195)
106 PLN03118 Rab family protein; P 99.8 7.3E-19 1.6E-23 173.9 18.9 163 424-622 14-178 (211)
107 PF00071 Ras: Ras family; Int 99.8 5.8E-19 1.3E-23 166.7 16.9 160 426-621 1-161 (162)
108 cd04114 Rab30 Rab30 subfamily. 99.8 8.1E-19 1.8E-23 166.9 18.0 160 424-619 7-167 (169)
109 PRK09518 bifunctional cytidyla 99.8 3.3E-18 7.2E-23 197.6 26.4 161 423-621 274-436 (712)
110 smart00174 RHO Rho (Ras homolo 99.8 4.2E-19 9E-24 169.9 15.7 163 427-620 1-171 (174)
111 cd04150 Arf1_5_like Arf1-Arf5- 99.8 8E-19 1.7E-23 165.6 16.8 157 426-618 2-158 (159)
112 cd04123 Rab21 Rab21 subfamily. 99.8 1.1E-18 2.3E-23 164.4 17.6 159 426-620 2-161 (162)
113 PRK15494 era GTPase Era; Provi 99.8 2.6E-19 5.7E-24 188.8 14.6 167 426-628 54-223 (339)
114 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1E-18 2.2E-23 173.0 17.8 160 425-620 2-175 (222)
115 cd01860 Rab5_related Rab5-rela 99.8 1.2E-18 2.6E-23 164.6 17.6 160 425-620 2-162 (163)
116 cd04177 RSR1 RSR1 subgroup. R 99.8 1.3E-18 2.9E-23 165.6 17.8 160 426-620 3-163 (168)
117 cd04118 Rab24 Rab24 subfamily. 99.8 1.1E-18 2.5E-23 170.0 17.6 160 426-622 2-167 (193)
118 cd04132 Rho4_like Rho4-like su 99.8 9E-19 2E-23 169.8 16.7 161 425-622 1-168 (187)
119 cd01898 Obg Obg subfamily. Th 99.8 4E-19 8.6E-24 169.2 13.5 169 177-371 1-169 (170)
120 PRK05291 trmE tRNA modificatio 99.8 1.1E-18 2.4E-23 190.8 18.6 183 423-649 214-402 (449)
121 cd04149 Arf6 Arf6 subfamily. 99.8 1E-18 2.2E-23 166.4 15.9 159 424-618 9-167 (168)
122 cd01863 Rab18 Rab18 subfamily. 99.8 2.1E-18 4.6E-23 162.7 17.8 158 426-619 2-160 (161)
123 cd01878 HflX HflX subfamily. 99.8 2.1E-18 4.6E-23 169.6 18.2 161 425-619 42-203 (204)
124 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.7E-18 5.8E-23 166.0 18.4 165 425-621 4-170 (183)
125 cd01893 Miro1 Miro1 subfamily. 99.8 2.4E-18 5.2E-23 163.5 17.8 160 426-620 2-163 (166)
126 cd01862 Rab7 Rab7 subfamily. 99.8 3.5E-18 7.5E-23 162.9 18.8 163 426-622 2-168 (172)
127 cd04139 RalA_RalB RalA/RalB su 99.8 3.2E-18 7E-23 161.6 17.7 160 426-621 2-162 (164)
128 PRK11058 GTPase HflX; Provisio 99.8 1.9E-18 4E-23 186.7 17.8 164 425-621 198-362 (426)
129 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.7E-18 3.8E-23 165.6 15.7 156 426-618 2-171 (173)
130 smart00177 ARF ARF-like small 99.8 2.6E-18 5.6E-23 164.8 16.7 160 425-620 14-173 (175)
131 cd04158 ARD1 ARD1 subfamily. 99.8 3.8E-18 8.2E-23 162.7 17.0 160 426-620 1-160 (169)
132 cd04135 Tc10 TC10 subfamily. 99.8 3.5E-18 7.7E-23 163.4 16.8 164 426-620 2-173 (174)
133 cd04171 SelB SelB subfamily. 99.8 4.5E-18 9.9E-23 160.6 17.3 156 426-618 2-163 (164)
134 TIGR00450 mnmE_trmE_thdF tRNA 99.8 3.9E-18 8.5E-23 185.3 18.8 186 422-649 201-395 (442)
135 KOG0395|consensus 99.8 3.2E-18 6.9E-23 165.9 16.2 163 425-623 4-167 (196)
136 COG0486 ThdF Predicted GTPase 99.8 2.7E-18 5.8E-23 180.1 16.6 189 421-649 214-407 (454)
137 cd04157 Arl6 Arl6 subfamily. 99.8 4E-18 8.8E-23 160.8 16.3 159 426-618 1-161 (162)
138 cd04154 Arl2 Arl2 subfamily. 99.8 5E-18 1.1E-22 162.5 16.8 158 425-618 15-172 (173)
139 PTZ00133 ADP-ribosylation fact 99.8 5.4E-18 1.2E-22 163.6 16.6 163 424-622 17-179 (182)
140 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 3.2E-18 6.9E-23 162.3 14.7 156 426-617 1-162 (164)
141 PLN00223 ADP-ribosylation fact 99.8 6.5E-18 1.4E-22 162.9 17.1 161 425-621 18-178 (181)
142 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.6E-18 7.8E-23 160.9 14.8 159 426-618 1-159 (160)
143 COG1160 Predicted GTPases [Gen 99.8 1.7E-18 3.8E-23 181.0 13.5 159 425-621 4-165 (444)
144 cd04147 Ras_dva Ras-dva subfam 99.8 1.2E-17 2.5E-22 163.6 18.6 162 426-622 1-164 (198)
145 cd00154 Rab Rab family. Rab G 99.8 1E-17 2.3E-22 156.5 17.2 155 426-617 2-158 (159)
146 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.4E-18 1.4E-22 160.4 15.9 162 426-618 1-166 (167)
147 cd04137 RheB Rheb (Ras Homolog 99.8 1.5E-17 3.1E-22 160.2 17.4 163 425-623 2-165 (180)
148 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.3E-17 2.9E-22 156.8 16.5 157 426-618 1-157 (158)
149 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.2E-17 2.5E-22 160.1 16.3 158 425-618 16-173 (174)
150 cd00879 Sar1 Sar1 subfamily. 99.8 1.9E-17 4.1E-22 160.9 17.3 171 424-619 19-189 (190)
151 COG2262 HflX GTPases [General 99.8 3.2E-17 6.8E-22 169.0 19.6 164 425-622 193-357 (411)
152 cd00157 Rho Rho (Ras homology) 99.8 1.7E-17 3.7E-22 157.9 16.6 156 426-618 2-170 (171)
153 cd01879 FeoB Ferrous iron tran 99.8 1.3E-17 2.8E-22 156.5 15.6 154 429-620 1-156 (158)
154 cd01870 RhoA_like RhoA-like su 99.8 2E-17 4.4E-22 158.3 17.1 164 425-619 2-173 (175)
155 cd00876 Ras Ras family. The R 99.8 2.4E-17 5.1E-22 154.9 17.0 158 426-619 1-159 (160)
156 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.9E-17 4.1E-22 157.5 16.3 160 426-618 1-166 (167)
157 COG0012 Predicted GTPase, prob 99.8 4.3E-18 9.2E-23 174.3 12.2 91 177-267 3-110 (372)
158 cd04151 Arl1 Arl1 subfamily. 99.8 1.7E-17 3.8E-22 156.1 15.6 157 426-618 1-157 (158)
159 cd04129 Rho2 Rho2 subfamily. 99.8 1.8E-17 3.9E-22 160.7 15.6 160 425-621 2-173 (187)
160 COG1159 Era GTPase [General fu 99.7 2.3E-18 5E-23 170.9 8.7 164 178-375 8-174 (298)
161 cd01890 LepA LepA subfamily. 99.7 6.2E-17 1.3E-21 155.5 17.9 156 426-620 2-176 (179)
162 PF02421 FeoB_N: Ferrous iron 99.7 7.6E-19 1.7E-23 162.4 4.2 150 178-368 2-156 (156)
163 cd01899 Ygr210 Ygr210 subfamil 99.7 1.1E-17 2.3E-22 173.8 13.1 176 179-375 1-271 (318)
164 cd01896 DRG The developmentall 99.7 4.4E-17 9.5E-22 163.1 16.7 170 426-621 2-226 (233)
165 cd04164 trmE TrmE (MnmE, ThdF, 99.7 4.6E-17 1E-21 152.3 15.8 154 424-620 1-156 (157)
166 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1E-16 2.2E-21 152.1 18.4 163 426-621 2-166 (168)
167 cd01895 EngA2 EngA2 subfamily. 99.7 1.4E-16 3E-21 151.5 19.2 165 425-619 3-173 (174)
168 cd01894 EngA1 EngA1 subfamily. 99.7 4.6E-17 1E-21 152.4 15.5 154 428-619 1-156 (157)
169 cd01889 SelB_euk SelB subfamil 99.7 1.2E-16 2.6E-21 155.7 17.9 165 426-621 2-186 (192)
170 KOG4252|consensus 99.7 4.9E-18 1.1E-22 153.5 7.4 164 423-623 19-183 (246)
171 TIGR02528 EutP ethanolamine ut 99.7 2.5E-17 5.4E-22 152.1 12.1 140 426-617 2-141 (142)
172 PRK03003 GTP-binding protein D 99.7 7.3E-17 1.6E-21 178.3 17.8 162 423-622 37-200 (472)
173 cd04159 Arl10_like Arl10-like 99.7 1.1E-16 2.3E-21 149.8 16.3 157 427-618 2-158 (159)
174 PTZ00258 GTP-binding protein; 99.7 2.7E-17 5.8E-22 173.7 13.2 113 176-289 21-151 (390)
175 PRK00089 era GTPase Era; Revie 99.7 4.6E-17 9.9E-22 169.3 14.8 167 425-625 6-175 (292)
176 smart00178 SAR Sar1p-like memb 99.7 1.2E-16 2.6E-21 154.5 16.1 167 424-619 17-183 (184)
177 PTZ00132 GTP-binding nuclear p 99.7 3.6E-16 7.8E-21 155.2 18.4 158 425-621 10-168 (215)
178 PRK09602 translation-associate 99.7 5.2E-17 1.1E-21 173.7 12.6 89 178-266 3-114 (396)
179 PRK09601 GTP-binding protein Y 99.7 4.6E-17 1E-21 169.9 11.8 116 177-293 3-136 (364)
180 cd01881 Obg_like The Obg-like 99.7 6.2E-17 1.3E-21 154.8 11.8 170 181-371 1-175 (176)
181 PRK09554 feoB ferrous iron tra 99.7 2.7E-16 5.9E-21 180.8 19.2 160 425-621 4-168 (772)
182 COG1163 DRG Predicted GTPase [ 99.7 3.9E-16 8.5E-21 155.4 17.6 172 424-621 63-289 (365)
183 cd01900 YchF YchF subfamily. 99.7 4.2E-17 9.1E-22 165.2 10.6 114 179-293 1-132 (274)
184 KOG1191|consensus 99.7 2.2E-16 4.7E-21 165.0 16.0 179 422-623 266-452 (531)
185 cd04155 Arl3 Arl3 subfamily. 99.7 4.4E-16 9.6E-21 148.7 16.5 158 425-618 15-172 (173)
186 PF00009 GTP_EFTU: Elongation 99.7 5E-16 1.1E-20 150.7 16.3 164 424-620 3-186 (188)
187 cd04102 RabL3 RabL3 (Rab-like3 99.7 1.5E-15 3.2E-20 148.4 18.6 123 426-564 2-147 (202)
188 KOG1423|consensus 99.7 1.2E-16 2.6E-21 157.1 10.8 191 423-629 71-279 (379)
189 cd00881 GTP_translation_factor 99.7 1.3E-15 2.9E-20 147.2 18.0 167 426-620 1-186 (189)
190 PRK15467 ethanolamine utilizat 99.7 4.2E-16 9.2E-21 146.7 14.0 146 426-622 3-148 (158)
191 TIGR00231 small_GTP small GTP- 99.7 1.5E-15 3.3E-20 141.4 17.7 157 425-617 2-160 (161)
192 TIGR00487 IF-2 translation ini 99.7 9E-16 1.9E-20 171.8 18.8 160 423-618 86-247 (587)
193 cd01899 Ygr210 Ygr210 subfamil 99.7 1.4E-15 3E-20 158.0 18.7 88 427-514 1-111 (318)
194 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 6.4E-16 1.4E-20 151.0 15.1 178 426-622 2-185 (196)
195 PRK00093 GTP-binding protein D 99.7 1.1E-15 2.3E-20 168.2 18.3 156 425-618 2-159 (435)
196 cd00880 Era_like Era (E. coli 99.7 1.9E-15 4.2E-20 140.8 17.1 161 429-619 1-162 (163)
197 TIGR03594 GTPase_EngA ribosome 99.7 8.6E-16 1.9E-20 168.7 17.0 158 426-621 1-160 (429)
198 cd01896 DRG The developmentall 99.7 3.2E-16 6.9E-21 156.9 12.2 171 177-373 1-226 (233)
199 TIGR00436 era GTP-binding prot 99.7 2.8E-16 6.1E-21 161.3 11.8 162 178-374 2-165 (270)
200 PRK10636 putative ABC transpor 99.7 1E-15 2.2E-20 175.1 17.6 153 143-322 6-194 (638)
201 PRK05306 infB translation init 99.7 1.4E-15 3E-20 174.1 18.2 162 421-619 287-450 (787)
202 cd04163 Era Era subfamily. Er 99.7 2.9E-15 6.3E-20 141.1 17.3 162 425-619 4-167 (168)
203 CHL00189 infB translation init 99.7 1.8E-15 3.9E-20 171.5 17.6 165 422-620 242-409 (742)
204 cd01891 TypA_BipA TypA (tyrosi 99.7 4.8E-15 1E-19 144.6 18.4 154 425-613 3-174 (194)
205 PRK04213 GTP-binding protein; 99.7 1.8E-15 3.9E-20 148.4 15.2 173 425-621 10-192 (201)
206 PLN00023 GTP-binding protein; 99.7 3E-15 6.4E-20 153.2 16.9 121 425-561 22-166 (334)
207 cd01888 eIF2_gamma eIF2-gamma 99.7 2.9E-15 6.4E-20 147.1 16.3 162 426-620 2-198 (203)
208 TIGR03156 GTP_HflX GTP-binding 99.6 4.8E-16 1E-20 164.3 11.3 162 175-371 188-350 (351)
209 COG1084 Predicted GTPase [Gene 99.6 6.4E-16 1.4E-20 154.7 11.4 160 177-371 169-334 (346)
210 TIGR00437 feoB ferrous iron tr 99.6 2.5E-15 5.4E-20 169.2 17.3 152 431-620 1-154 (591)
211 KOG1486|consensus 99.6 6.7E-17 1.4E-21 154.3 3.8 120 134-266 31-151 (364)
212 cd01886 EF-G Elongation factor 99.6 9.2E-16 2E-20 156.5 12.4 187 426-652 1-210 (270)
213 TIGR00491 aIF-2 translation in 99.6 6.9E-15 1.5E-19 164.3 20.1 174 424-622 4-217 (590)
214 PTZ00099 rab6; Provisional 99.6 3.4E-15 7.4E-20 143.0 14.4 134 453-622 9-143 (176)
215 PRK11147 ABC transporter ATPas 99.6 2.7E-14 5.9E-19 163.7 24.5 136 167-323 20-202 (635)
216 PRK10982 galactose/methyl gala 99.6 3.2E-15 6.9E-20 166.8 16.0 254 166-447 14-297 (491)
217 TIGR03598 GTPase_YsxC ribosome 99.6 8.7E-15 1.9E-19 140.9 16.6 155 423-610 17-179 (179)
218 TIGR00475 selB selenocysteine- 99.6 8E-15 1.7E-19 165.0 18.8 163 426-623 2-168 (581)
219 COG2262 HflX GTPases [General 99.6 1E-15 2.2E-20 158.0 10.5 164 175-374 191-357 (411)
220 PRK09700 D-allose transporter 99.6 2.3E-15 5.1E-20 168.7 14.4 258 166-447 21-312 (510)
221 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.3E-14 2.8E-19 141.1 17.3 153 425-610 3-172 (195)
222 COG1084 Predicted GTPase [Gene 99.6 8.1E-15 1.8E-19 146.8 16.1 167 425-622 169-337 (346)
223 PRK00454 engB GTP-binding prot 99.6 2.4E-14 5.1E-19 139.7 19.2 164 424-622 24-195 (196)
224 cd04166 CysN_ATPS CysN_ATPS su 99.6 4E-15 8.7E-20 146.7 13.6 153 426-613 1-186 (208)
225 PRK10762 D-ribose transporter 99.6 4.5E-15 9.7E-20 165.9 15.6 249 166-447 20-301 (501)
226 PF00025 Arf: ADP-ribosylation 99.6 7.1E-15 1.5E-19 140.9 14.4 162 424-620 14-175 (175)
227 TIGR01393 lepA GTP-binding pro 99.6 1.3E-14 2.7E-19 163.4 18.5 157 425-620 4-179 (595)
228 PRK15494 era GTPase Era; Provi 99.6 1.4E-15 3.1E-20 160.5 10.1 179 161-374 30-217 (339)
229 PRK13549 xylose transporter AT 99.6 6E-15 1.3E-19 165.1 15.6 255 167-447 22-311 (506)
230 PRK15439 autoinducer 2 ABC tra 99.6 6.9E-15 1.5E-19 164.6 15.5 259 166-447 27-312 (510)
231 cd01897 NOG NOG1 is a nucleola 99.6 6.9E-15 1.5E-19 139.7 13.3 164 178-372 2-167 (168)
232 COG0370 FeoB Fe2+ transport sy 99.6 1.3E-14 2.7E-19 158.9 16.2 158 425-622 4-165 (653)
233 KOG0073|consensus 99.6 4.8E-14 1.1E-18 126.6 17.0 158 425-620 17-177 (185)
234 PRK11058 GTPase HflX; Provisio 99.6 4.9E-15 1.1E-19 160.2 12.2 164 177-373 198-362 (426)
235 TIGR03269 met_CoM_red_A2 methy 99.6 5.9E-15 1.3E-19 165.8 12.8 157 276-447 163-333 (520)
236 PTZ00258 GTP-binding protein; 99.6 5.1E-14 1.1E-18 148.9 18.8 92 423-514 20-127 (390)
237 PRK11819 putative ABC transpor 99.6 1.3E-13 2.9E-18 155.8 23.6 140 167-322 24-208 (556)
238 KOG1491|consensus 99.6 6.6E-15 1.4E-19 147.2 11.1 89 178-266 22-126 (391)
239 COG1100 GTPase SAR1 and relate 99.6 4.1E-14 8.9E-19 140.6 16.9 172 425-622 6-186 (219)
240 TIGR02633 xylG D-xylose ABC tr 99.6 1.9E-14 4.1E-19 161.0 15.7 256 166-447 17-309 (500)
241 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.5E-13 3.3E-18 155.3 23.0 141 166-322 21-206 (552)
242 PRK15064 ABC transporter ATP-b 99.6 1.7E-13 3.8E-18 154.2 23.1 140 167-321 18-199 (530)
243 PRK10512 selenocysteinyl-tRNA- 99.6 5.2E-14 1.1E-18 158.9 18.7 161 426-621 2-166 (614)
244 PRK09602 translation-associate 99.6 8E-14 1.7E-18 149.3 18.7 89 425-513 2-113 (396)
245 COG0486 ThdF Predicted GTPase 99.6 3.5E-15 7.6E-20 156.8 8.0 163 173-375 214-378 (454)
246 PRK11288 araG L-arabinose tran 99.6 1.6E-14 3.4E-19 161.5 13.7 248 166-447 20-302 (501)
247 KOG0927|consensus 99.6 3.2E-14 6.8E-19 150.4 13.8 146 166-323 91-267 (614)
248 PRK12317 elongation factor 1-a 99.6 3E-14 6.4E-19 155.9 14.0 161 424-614 6-198 (425)
249 PRK04004 translation initiatio 99.6 1.4E-13 3E-18 154.6 19.6 174 423-621 5-218 (586)
250 PRK05433 GTP-binding protein L 99.6 1.1E-13 2.4E-18 156.0 18.6 160 423-621 6-184 (600)
251 cd01878 HflX HflX subfamily. 99.6 1.9E-14 4.2E-19 141.5 11.1 162 176-371 41-203 (204)
252 KOG1532|consensus 99.6 1.2E-13 2.5E-18 134.2 16.0 164 473-649 117-292 (366)
253 KOG0393|consensus 99.5 1.1E-14 2.3E-19 138.2 8.6 171 425-620 5-178 (198)
254 cd00882 Ras_like_GTPase Ras-li 99.5 1.4E-13 3.1E-18 126.6 15.8 154 429-617 1-156 (157)
255 TIGR00092 GTP-binding protein 99.5 9E-15 2E-19 152.8 8.5 120 178-298 4-142 (368)
256 PF04548 AIG1: AIG1 family; I 99.5 3.4E-14 7.4E-19 140.3 11.9 178 426-625 2-190 (212)
257 PRK10938 putative molybdenum t 99.5 2E-14 4.4E-19 160.4 11.6 260 167-447 20-309 (490)
258 cd01883 EF1_alpha Eukaryotic e 99.5 1.1E-13 2.5E-18 137.5 15.4 158 426-610 1-194 (219)
259 PRK10261 glutathione transport 99.5 5.9E-14 1.3E-18 160.5 14.8 145 165-324 31-215 (623)
260 cd01876 YihA_EngB The YihA (En 99.5 3.2E-13 6.8E-18 127.5 16.5 161 426-619 1-169 (170)
261 TIGR00483 EF-1_alpha translati 99.5 1.2E-13 2.7E-18 150.9 15.4 162 424-614 7-200 (426)
262 PRK00089 era GTPase Era; Revie 99.5 3.6E-14 7.8E-19 147.6 10.1 163 178-374 7-172 (292)
263 COG0012 Predicted GTPase, prob 99.5 3.2E-13 7E-18 138.7 16.8 93 424-516 2-111 (372)
264 PRK09866 hypothetical protein; 99.5 1.3E-12 2.8E-17 142.4 22.0 119 473-618 231-350 (741)
265 COG0218 Predicted GTPase [Gene 99.5 4.5E-13 9.8E-18 126.5 16.2 167 424-622 24-198 (200)
266 COG0532 InfB Translation initi 99.5 3.2E-13 6.9E-18 144.1 16.9 165 423-623 4-172 (509)
267 cd04168 TetM_like Tet(M)-like 99.5 5.8E-13 1.3E-17 133.6 17.8 112 426-560 1-130 (237)
268 KOG0070|consensus 99.5 1.7E-13 3.6E-18 126.7 12.5 157 425-622 18-179 (181)
269 PRK15134 microcin C ABC transp 99.5 1.8E-13 3.9E-18 154.1 15.5 261 166-447 25-335 (529)
270 KOG1423|consensus 99.5 1.5E-14 3.1E-19 142.6 5.7 180 178-373 74-271 (379)
271 PF10662 PduV-EutP: Ethanolami 99.5 4.2E-13 9.2E-18 121.3 14.4 141 425-617 2-142 (143)
272 PLN03073 ABC transporter F fam 99.5 6.9E-13 1.5E-17 152.6 19.9 49 275-323 338-390 (718)
273 cd04165 GTPBP1_like GTPBP1-lik 99.5 8.2E-13 1.8E-17 131.3 17.8 165 426-618 1-220 (224)
274 PRK12736 elongation factor Tu; 99.5 5.8E-13 1.3E-17 143.8 18.0 150 425-606 13-179 (394)
275 PRK13409 putative ATPase RIL; 99.5 3.4E-13 7.4E-18 152.3 16.6 274 143-447 78-388 (590)
276 cd01879 FeoB Ferrous iron tran 99.5 5.8E-14 1.3E-18 131.6 8.6 153 181-371 1-155 (158)
277 TIGR01394 TypA_BipA GTP-bindin 99.5 6.7E-13 1.5E-17 149.2 18.5 162 425-620 2-190 (594)
278 PF08477 Miro: Miro-like prote 99.5 9.4E-14 2E-18 124.0 9.4 116 426-557 1-119 (119)
279 KOG0075|consensus 99.5 1.9E-13 4.2E-18 120.2 10.5 158 425-622 21-183 (186)
280 PRK10218 GTP-binding protein; 99.5 8.7E-13 1.9E-17 148.0 18.7 163 423-619 4-193 (607)
281 PRK09601 GTP-binding protein Y 99.5 1.1E-12 2.5E-17 137.1 18.2 89 425-513 3-107 (364)
282 KOG3883|consensus 99.5 1.1E-12 2.4E-17 116.1 15.2 167 422-622 7-176 (198)
283 cd04167 Snu114p Snu114p subfam 99.5 1.5E-12 3.2E-17 129.0 17.9 158 426-610 2-192 (213)
284 CHL00071 tufA elongation facto 99.5 6.4E-13 1.4E-17 144.2 16.3 152 425-609 13-181 (409)
285 cd04105 SR_beta Signal recogni 99.5 2.4E-12 5.3E-17 126.3 18.8 173 426-618 2-202 (203)
286 COG0370 FeoB Fe2+ transport sy 99.5 9.6E-14 2.1E-18 152.0 9.5 155 178-373 5-164 (653)
287 TIGR03680 eif2g_arch translati 99.5 7E-13 1.5E-17 143.8 16.1 163 425-620 5-195 (406)
288 cd01894 EngA1 EngA1 subfamily. 99.5 9.5E-14 2.1E-18 129.8 8.1 154 180-371 1-156 (157)
289 PF01926 MMR_HSR1: 50S ribosom 99.5 5.8E-13 1.3E-17 118.5 12.8 113 426-555 1-116 (116)
290 PRK05124 cysN sulfate adenylyl 99.5 8.8E-13 1.9E-17 145.1 16.6 157 425-614 28-218 (474)
291 PRK04000 translation initiatio 99.5 6.6E-13 1.4E-17 143.9 15.4 163 425-620 10-200 (411)
292 KOG4423|consensus 99.5 4.7E-15 1E-19 135.5 -1.3 166 425-624 26-197 (229)
293 TIGR02034 CysN sulfate adenyly 99.5 9.4E-13 2E-17 142.7 16.2 154 426-613 2-189 (406)
294 cd01885 EF2 EF2 (for archaea a 99.5 2.6E-12 5.6E-17 127.2 17.7 161 426-609 2-200 (222)
295 KOG1487|consensus 99.5 1.6E-14 3.4E-19 138.8 1.9 117 177-305 60-176 (358)
296 TIGR00485 EF-Tu translation el 99.5 1.6E-12 3.4E-17 140.7 17.2 166 425-622 13-195 (394)
297 cd01858 NGP_1 NGP-1. Autoanti 99.4 1.6E-13 3.4E-18 129.2 8.0 155 248-482 2-157 (157)
298 cd04170 EF-G_bact Elongation f 99.4 4.2E-13 9.1E-18 137.7 11.6 185 426-651 1-207 (268)
299 cd04164 trmE TrmE (MnmE, ThdF, 99.4 3.3E-13 7.1E-18 126.1 9.7 154 176-372 1-156 (157)
300 PRK05291 trmE tRNA modificatio 99.4 2.7E-13 5.8E-18 148.5 10.5 157 174-374 213-371 (449)
301 cd04160 Arfrp1 Arfrp1 subfamil 99.4 4.9E-13 1.1E-17 126.8 11.0 160 178-370 1-166 (167)
302 cd04169 RF3 RF3 subfamily. Pe 99.4 3.1E-13 6.7E-18 137.9 10.1 114 425-561 3-138 (267)
303 PRK12735 elongation factor Tu; 99.4 1.8E-12 3.9E-17 140.2 16.6 163 425-619 13-201 (396)
304 KOG0076|consensus 99.4 6.8E-13 1.5E-17 120.4 10.9 166 426-623 19-189 (197)
305 cd04171 SelB SelB subfamily. 99.4 4.4E-13 9.6E-18 126.3 10.0 156 178-370 2-163 (164)
306 cd01861 Rab6 Rab6 subfamily. 99.4 7.9E-13 1.7E-17 124.4 11.4 156 178-371 2-160 (161)
307 cd01895 EngA2 EngA2 subfamily. 99.4 1E-12 2.2E-17 124.7 12.2 163 178-370 4-172 (174)
308 KOG0462|consensus 99.4 1.5E-12 3.2E-17 137.6 14.1 158 423-621 59-235 (650)
309 PLN03127 Elongation factor Tu; 99.4 3.5E-12 7.6E-17 139.1 17.5 162 425-619 62-250 (447)
310 cd04104 p47_IIGP_like p47 (47- 99.4 5.3E-12 1.1E-16 123.4 17.0 166 425-621 2-184 (197)
311 COG1123 ATPase components of v 99.4 2.1E-12 4.5E-17 139.9 15.4 145 166-326 25-203 (539)
312 PRK09554 feoB ferrous iron tra 99.4 6.5E-13 1.4E-17 153.1 11.8 158 178-372 5-167 (772)
313 COG0218 Predicted GTPase [Gene 99.4 7.7E-13 1.7E-17 125.0 9.8 165 176-373 24-197 (200)
314 KOG0071|consensus 99.4 2.3E-12 4.9E-17 112.5 11.8 158 425-620 18-177 (180)
315 TIGR00484 EF-G translation elo 99.4 9.3E-13 2E-17 152.1 12.5 117 422-561 8-142 (689)
316 PRK05506 bifunctional sulfate 99.4 2.7E-12 5.8E-17 147.0 16.2 154 425-612 25-212 (632)
317 PF01926 MMR_HSR1: 50S ribosom 99.4 1.5E-13 3.2E-18 122.3 4.6 113 178-307 1-116 (116)
318 PLN03126 Elongation factor Tu; 99.4 7.7E-12 1.7E-16 137.1 18.6 150 425-606 82-248 (478)
319 KOG1145|consensus 99.4 4.8E-12 1E-16 133.6 16.0 164 422-621 151-316 (683)
320 cd04138 H_N_K_Ras_like H-Ras/N 99.4 1.9E-12 4.2E-17 121.6 11.7 157 178-371 3-160 (162)
321 cd01855 YqeH YqeH. YqeH is an 99.4 3.9E-13 8.5E-18 130.7 7.0 156 246-482 26-190 (190)
322 PRK00007 elongation factor G; 99.4 9.9E-13 2.1E-17 151.7 11.3 160 422-619 8-185 (693)
323 cd04163 Era Era subfamily. Er 99.4 2.2E-12 4.8E-17 121.4 11.3 161 178-371 5-167 (168)
324 COG3596 Predicted GTPase [Gene 99.4 8.3E-12 1.8E-16 122.6 15.4 169 425-620 40-221 (296)
325 PRK12739 elongation factor G; 99.4 3.1E-12 6.8E-17 147.7 14.5 160 422-619 6-183 (691)
326 cd04142 RRP22 RRP22 subfamily. 99.4 2.2E-12 4.7E-17 126.2 11.0 169 178-373 2-174 (198)
327 PRK00049 elongation factor Tu; 99.4 1.4E-11 2.9E-16 133.2 17.9 150 425-606 13-179 (396)
328 cd01868 Rab11_like Rab11-like. 99.4 2.9E-12 6.2E-17 121.3 11.0 157 177-371 4-163 (165)
329 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1E-12 2.2E-17 128.3 8.0 178 178-374 2-185 (196)
330 KOG0066|consensus 99.4 1.1E-11 2.3E-16 127.6 15.5 142 167-324 281-459 (807)
331 TIGR00450 mnmE_trmE_thdF tRNA 99.4 2.2E-12 4.8E-17 140.5 11.4 160 173-374 200-361 (442)
332 cd01866 Rab2 Rab2 subfamily. 99.4 2.8E-12 6.2E-17 121.9 10.7 159 177-372 5-165 (168)
333 cd04145 M_R_Ras_like M-Ras/R-R 99.4 4E-12 8.8E-17 119.9 11.6 158 178-372 4-163 (164)
334 KOG1490|consensus 99.4 1.7E-12 3.6E-17 135.7 9.5 167 425-619 169-339 (620)
335 TIGR03598 GTPase_YsxC ribosome 99.4 1.5E-12 3.2E-17 125.3 8.6 150 176-361 18-178 (179)
336 cd00879 Sar1 Sar1 subfamily. 99.4 4.1E-12 8.8E-17 123.3 11.7 168 177-371 20-189 (190)
337 cd04157 Arl6 Arl6 subfamily. 99.4 4.2E-12 9E-17 119.6 11.2 156 178-369 1-160 (162)
338 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 5E-12 1.1E-16 125.1 12.0 143 165-325 19-187 (254)
339 PRK09563 rbgA GTPase YlqF; Rev 99.4 2.4E-12 5.2E-17 133.1 10.2 165 246-487 16-181 (287)
340 cd04158 ARD1 ARD1 subfamily. 99.4 7E-12 1.5E-16 119.4 12.6 159 178-373 1-161 (169)
341 cd04151 Arl1 Arl1 subfamily. 99.4 4.7E-12 1E-16 119.0 11.2 154 178-369 1-156 (158)
342 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 7.7E-12 1.7E-16 118.5 12.7 162 178-372 2-165 (168)
343 PTZ00141 elongation factor 1- 99.4 1.3E-11 2.8E-16 134.9 16.1 159 425-611 8-203 (446)
344 cd04136 Rap_like Rap-like subf 99.3 5E-12 1.1E-16 119.2 10.8 158 178-371 3-161 (163)
345 smart00178 SAR Sar1p-like memb 99.3 6.6E-12 1.4E-16 121.4 11.8 163 177-370 18-182 (184)
346 PLN00043 elongation factor 1-a 99.3 1.6E-11 3.5E-16 134.1 16.0 162 425-611 8-203 (447)
347 cd01856 YlqF YlqF. Proteins o 99.3 4.4E-12 9.4E-17 121.1 10.2 159 246-482 11-170 (171)
348 cd04159 Arl10_like Arl10-like 99.3 7.1E-12 1.5E-16 116.9 11.5 156 178-370 1-158 (159)
349 smart00175 RAB Rab subfamily o 99.3 5.6E-12 1.2E-16 118.9 10.9 158 178-372 2-161 (164)
350 PRK04213 GTP-binding protein; 99.3 5.9E-12 1.3E-16 123.5 11.3 175 177-374 10-193 (201)
351 PRK00454 engB GTP-binding prot 99.3 2.9E-12 6.4E-17 124.9 9.2 160 176-373 24-194 (196)
352 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 6.4E-12 1.4E-16 120.3 11.3 155 177-369 16-172 (174)
353 cd00881 GTP_translation_factor 99.3 5E-12 1.1E-16 122.1 10.6 167 178-372 1-186 (189)
354 COG1120 FepC ABC-type cobalami 99.3 4E-12 8.7E-17 126.5 10.0 163 143-325 7-186 (258)
355 cd01865 Rab3 Rab3 subfamily. 99.3 5.4E-12 1.2E-16 119.6 10.5 158 178-372 3-162 (165)
356 KOG0062|consensus 99.3 2.6E-12 5.7E-17 135.3 9.0 146 142-322 84-243 (582)
357 cd04109 Rab28 Rab28 subfamily. 99.3 5.6E-12 1.2E-16 125.1 11.0 161 178-374 2-167 (215)
358 TIGR03596 GTPase_YlqF ribosome 99.3 4.3E-12 9.2E-17 130.6 10.5 164 246-486 13-177 (276)
359 cd04156 ARLTS1 ARLTS1 subfamil 99.3 6.2E-12 1.3E-16 118.3 10.6 157 178-370 1-159 (160)
360 KOG1490|consensus 99.3 3.2E-12 7E-17 133.6 9.3 168 177-372 169-340 (620)
361 cd04114 Rab30 Rab30 subfamily. 99.3 4.7E-12 1E-16 120.2 9.8 161 175-371 6-167 (169)
362 cd00154 Rab Rab family. Rab G 99.3 7.3E-12 1.6E-16 116.8 10.9 154 178-369 2-158 (159)
363 PRK15467 ethanolamine utilizat 99.3 2.4E-12 5.3E-17 121.1 7.6 146 178-374 3-148 (158)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 99.3 4.3E-12 9.2E-17 117.1 9.1 135 246-483 3-139 (141)
365 smart00173 RAS Ras subfamily o 99.3 9.9E-12 2.1E-16 117.4 11.8 158 178-372 2-161 (164)
366 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 8.9E-12 1.9E-16 118.1 11.4 159 177-372 3-163 (166)
367 cd00880 Era_like Era (E. coli 99.3 1.2E-11 2.6E-16 115.1 12.0 161 181-371 1-162 (163)
368 cd01849 YlqF_related_GTPase Yl 99.3 6E-12 1.3E-16 118.1 9.9 127 297-482 28-155 (155)
369 cd04119 RJL RJL (RabJ-Like) su 99.3 8.5E-12 1.8E-16 118.0 11.0 159 178-372 2-166 (168)
370 cd04112 Rab26 Rab26 subfamily. 99.3 6.9E-12 1.5E-16 122.0 10.5 160 178-374 2-164 (191)
371 TIGR00231 small_GTP small GTP- 99.3 3.4E-12 7.4E-17 118.6 7.9 158 177-369 2-160 (161)
372 cd01867 Rab8_Rab10_Rab13_like 99.3 6.9E-12 1.5E-16 119.1 10.1 159 177-372 4-164 (167)
373 cd01900 YchF YchF subfamily. 99.3 1.2E-11 2.5E-16 125.7 12.3 112 427-539 1-130 (274)
374 PTZ00327 eukaryotic translatio 99.3 2.6E-11 5.7E-16 132.0 15.8 164 424-620 34-232 (460)
375 PRK13351 elongation factor G; 99.3 3.1E-11 6.8E-16 139.8 17.5 116 423-561 7-140 (687)
376 PRK00741 prfC peptide chain re 99.3 2.7E-11 5.8E-16 134.6 16.2 117 422-561 8-146 (526)
377 cd01864 Rab19 Rab19 subfamily. 99.3 6.3E-12 1.4E-16 119.0 9.7 159 177-371 4-164 (165)
378 cd01859 MJ1464 MJ1464. This f 99.3 8.3E-12 1.8E-16 117.2 10.4 153 245-482 2-156 (156)
379 cd01863 Rab18 Rab18 subfamily. 99.3 9E-12 2E-16 117.3 10.6 158 178-371 2-160 (161)
380 cd04154 Arl2 Arl2 subfamily. 99.3 8.6E-12 1.9E-16 119.2 10.6 157 177-369 15-171 (173)
381 cd01862 Rab7 Rab7 subfamily. 99.3 1.2E-11 2.6E-16 117.6 11.4 161 178-372 2-166 (172)
382 cd04139 RalA_RalB RalA/RalB su 99.3 1.6E-11 3.4E-16 115.7 12.1 156 178-372 2-161 (164)
383 cd04175 Rap1 Rap1 subgroup. T 99.3 1.2E-11 2.5E-16 117.0 11.1 158 178-372 3-162 (164)
384 cd01876 YihA_EngB The YihA (En 99.3 5.7E-12 1.2E-16 118.9 8.9 161 178-371 1-169 (170)
385 cd04150 Arf1_5_like Arf1-Arf5- 99.3 1.6E-11 3.5E-16 115.7 11.8 154 178-369 2-157 (159)
386 cd00876 Ras Ras family. The R 99.3 1.5E-11 3.3E-16 115.2 11.6 157 178-371 1-159 (160)
387 cd01889 SelB_euk SelB subfamil 99.3 5.3E-12 1.1E-16 122.9 8.4 161 178-372 2-185 (192)
388 PRK14845 translation initiatio 99.3 8.7E-11 1.9E-15 137.7 19.9 165 435-622 472-674 (1049)
389 cd04144 Ras2 Ras2 subfamily. 99.3 1.8E-11 3.9E-16 119.0 11.9 161 178-374 1-164 (190)
390 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.6E-11 3.4E-16 120.5 11.6 162 178-374 2-169 (201)
391 COG2229 Predicted GTPase [Gene 99.3 6.8E-11 1.5E-15 109.3 14.9 157 424-619 10-176 (187)
392 cd00878 Arf_Arl Arf (ADP-ribos 99.3 1.7E-11 3.6E-16 115.1 11.2 156 178-369 1-156 (158)
393 cd04123 Rab21 Rab21 subfamily. 99.3 1.2E-11 2.5E-16 116.2 10.1 157 178-371 2-160 (162)
394 cd04155 Arl3 Arl3 subfamily. 99.3 1.3E-11 2.8E-16 117.8 10.4 156 177-370 15-172 (173)
395 cd04149 Arf6 Arf6 subfamily. 99.3 1.8E-11 3.9E-16 116.5 11.4 155 177-369 10-166 (168)
396 KOG0410|consensus 99.3 5.1E-12 1.1E-16 125.7 7.6 162 425-621 179-341 (410)
397 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 2.6E-11 5.6E-16 117.1 11.9 164 178-373 5-170 (183)
398 cd04124 RabL2 RabL2 subfamily. 99.3 3.3E-11 7.1E-16 113.8 12.4 153 178-372 2-157 (161)
399 cd04101 RabL4 RabL4 (Rab-like4 99.3 2E-11 4.4E-16 115.2 10.8 157 178-371 2-162 (164)
400 COG1116 TauB ABC-type nitrate/ 99.3 2.5E-11 5.3E-16 118.6 11.4 142 167-326 20-179 (248)
401 cd04140 ARHI_like ARHI subfami 99.3 2E-11 4.3E-16 115.7 10.5 158 178-370 3-162 (165)
402 TIGR00503 prfC peptide chain r 99.3 1E-10 2.2E-15 130.1 17.6 126 422-570 9-158 (527)
403 cd04106 Rab23_lke Rab23-like s 99.3 2E-11 4.2E-16 115.0 10.3 154 178-370 2-160 (162)
404 PF09439 SRPRB: Signal recogni 99.3 4.9E-11 1.1E-15 112.9 12.8 134 425-576 4-145 (181)
405 cd04146 RERG_RasL11_like RERG/ 99.3 2.3E-11 5E-16 115.1 10.7 160 178-372 1-163 (165)
406 cd04110 Rab35 Rab35 subfamily. 99.3 3.4E-11 7.4E-16 117.9 12.2 159 177-374 7-168 (199)
407 COG0481 LepA Membrane GTPase L 99.3 2.7E-11 5.8E-16 126.1 11.8 157 423-620 8-185 (603)
408 KOG1491|consensus 99.3 1.4E-10 2.9E-15 116.6 16.2 92 425-516 21-128 (391)
409 cd04113 Rab4 Rab4 subfamily. 99.3 1.8E-11 3.9E-16 115.3 9.6 156 178-370 2-159 (161)
410 cd01860 Rab5_related Rab5-rela 99.3 4E-11 8.6E-16 113.0 11.9 157 178-372 3-162 (163)
411 cd04116 Rab9 Rab9 subfamily. 99.3 2.6E-11 5.5E-16 115.4 10.4 160 177-370 6-168 (170)
412 PLN00223 ADP-ribosylation fact 99.3 4.7E-11 1E-15 115.1 12.1 158 178-373 19-178 (181)
413 PTZ00133 ADP-ribosylation fact 99.3 5.3E-11 1.1E-15 114.8 12.4 159 177-373 18-178 (182)
414 TIGR00437 feoB ferrous iron tr 99.2 1.5E-11 3.1E-16 138.9 9.7 152 183-372 1-154 (591)
415 KOG1191|consensus 99.2 4.8E-12 1E-16 132.7 5.3 182 173-375 265-452 (531)
416 smart00177 ARF ARF-like small 99.2 5.2E-11 1.1E-15 114.1 12.0 158 177-372 14-173 (175)
417 KOG0096|consensus 99.2 1.5E-11 3.3E-16 113.3 7.9 158 425-621 11-169 (216)
418 cd04122 Rab14 Rab14 subfamily. 99.2 3.5E-11 7.6E-16 114.1 10.4 158 177-372 3-163 (166)
419 KOG0074|consensus 99.2 5.1E-11 1.1E-15 104.3 10.3 160 424-619 17-177 (185)
420 PF10662 PduV-EutP: Ethanolami 99.2 1.5E-11 3.3E-16 111.2 7.4 141 177-369 2-142 (143)
421 PLN03110 Rab GTPase; Provision 99.2 3.4E-11 7.4E-16 119.5 10.6 162 177-374 13-175 (216)
422 cd04176 Rap2 Rap2 subgroup. T 99.2 4.5E-11 9.7E-16 112.8 10.8 158 178-371 3-161 (163)
423 cd04120 Rab12 Rab12 subfamily. 99.2 4.4E-11 9.6E-16 117.1 11.0 159 178-372 2-162 (202)
424 TIGR00750 lao LAO/AO transport 99.2 2E-10 4.4E-15 119.5 16.5 138 473-649 128-266 (300)
425 KOG1486|consensus 99.2 3E-10 6.6E-15 109.1 16.0 92 423-515 61-152 (364)
426 KOG1144|consensus 99.2 1.1E-10 2.3E-15 126.8 14.0 178 423-626 474-692 (1064)
427 COG4586 ABC-type uncharacteriz 99.2 5.6E-11 1.2E-15 116.3 10.8 135 165-322 39-201 (325)
428 cd04177 RSR1 RSR1 subgroup. R 99.2 7E-11 1.5E-15 112.3 11.4 158 178-371 3-162 (168)
429 cd04137 RheB Rheb (Ras Homolog 99.2 4.8E-11 1E-15 114.7 10.4 160 178-374 3-164 (180)
430 cd04118 Rab24 Rab24 subfamily. 99.2 7.1E-11 1.5E-15 115.0 11.7 158 178-373 2-166 (193)
431 cd01890 LepA LepA subfamily. 99.2 9.8E-11 2.1E-15 112.3 12.5 154 178-372 2-176 (179)
432 cd04117 Rab15 Rab15 subfamily. 99.2 5E-11 1.1E-15 112.5 10.2 156 178-371 2-160 (161)
433 cd04127 Rab27A Rab27a subfamil 99.2 5.5E-11 1.2E-15 114.2 10.7 158 177-372 5-176 (180)
434 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 9.6E-11 2.1E-15 111.7 12.1 157 178-373 2-165 (170)
435 cd01888 eIF2_gamma eIF2-gamma 99.2 2.8E-11 6.1E-16 118.9 8.6 160 178-373 2-199 (203)
436 KOG0072|consensus 99.2 7.8E-11 1.7E-15 103.5 10.2 156 425-621 19-179 (182)
437 PTZ00369 Ras-like protein; Pro 99.2 8.2E-11 1.8E-15 114.2 11.5 161 177-374 6-168 (189)
438 COG1129 MglA ABC-type sugar tr 99.2 4.5E-10 9.8E-15 121.1 18.1 120 167-305 25-169 (500)
439 PLN03108 Rab family protein; P 99.2 7.3E-11 1.6E-15 116.6 11.2 159 177-372 7-167 (210)
440 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 7.6E-11 1.6E-15 111.7 10.9 155 179-369 2-162 (164)
441 cd04143 Rhes_like Rhes_like su 99.2 8.5E-11 1.8E-15 118.7 11.8 160 178-372 2-170 (247)
442 cd01893 Miro1 Miro1 subfamily. 99.2 8.9E-11 1.9E-15 111.4 11.3 157 178-372 2-163 (166)
443 cd04166 CysN_ATPS CysN_ATPS su 99.2 2.1E-11 4.6E-16 120.2 7.1 153 178-364 1-185 (208)
444 PLN03118 Rab family protein; P 99.2 9E-11 1.9E-15 116.1 11.6 160 177-374 15-178 (211)
445 cd04111 Rab39 Rab39 subfamily. 99.2 9.1E-11 2E-15 116.0 11.6 162 178-374 4-167 (211)
446 cd01892 Miro2 Miro2 subfamily. 99.2 4.9E-11 1.1E-15 113.6 9.3 159 176-372 4-165 (169)
447 cd04147 Ras_dva Ras-dva subfam 99.2 9.2E-11 2E-15 114.8 11.1 160 178-373 1-163 (198)
448 cd04125 RabA_like RabA-like su 99.2 8.6E-11 1.9E-15 113.9 10.8 160 178-373 2-162 (188)
449 COG5256 TEF1 Translation elong 99.2 1.5E-10 3.3E-15 119.8 12.9 162 425-613 8-203 (428)
450 cd00877 Ran Ran (Ras-related n 99.2 1E-10 2.2E-15 111.0 10.8 155 178-373 2-159 (166)
451 cd04161 Arl2l1_Arl13_like Arl2 99.2 1.2E-10 2.6E-15 110.6 10.6 157 179-369 2-165 (167)
452 cd04121 Rab40 Rab40 subfamily. 99.2 1.5E-10 3.2E-15 112.3 11.3 157 177-372 7-166 (189)
453 cd04148 RGK RGK subfamily. Th 99.2 1.6E-10 3.5E-15 115.0 11.9 159 178-373 2-163 (221)
454 PF00009 GTP_EFTU: Elongation 99.2 4.3E-11 9.3E-16 116.1 7.5 165 176-373 3-187 (188)
455 cd00157 Rho Rho (Ras homology) 99.2 1.2E-10 2.6E-15 110.7 10.4 155 178-370 2-170 (171)
456 cd04115 Rab33B_Rab33A Rab33B/R 99.2 9.6E-11 2.1E-15 111.6 9.7 162 177-372 3-168 (170)
457 TIGR02528 EutP ethanolamine ut 99.2 1.8E-11 3.9E-16 112.8 4.5 139 178-368 2-140 (142)
458 COG1119 ModF ABC-type molybden 99.2 1.6E-10 3.6E-15 112.1 11.1 169 132-325 29-219 (257)
459 PRK13796 GTPase YqeH; Provisio 99.2 3.7E-11 8.1E-16 128.1 7.3 155 248-485 62-223 (365)
460 cd04104 p47_IIGP_like p47 (47- 99.2 1.1E-10 2.5E-15 114.0 10.0 165 178-377 3-188 (197)
461 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 1.6E-10 3.4E-15 110.5 10.7 159 178-373 4-164 (172)
462 TIGR03597 GTPase_YqeH ribosome 99.2 5.9E-11 1.3E-15 126.4 8.5 178 253-513 62-248 (360)
463 COG1131 CcmA ABC-type multidru 99.2 1.7E-10 3.8E-15 119.3 11.5 142 166-325 21-184 (293)
464 PRK12740 elongation factor G; 99.2 6.4E-10 1.4E-14 128.7 17.4 109 430-561 1-127 (668)
465 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 8.1E-10 1.8E-14 109.4 15.3 173 426-619 1-174 (232)
466 cd04132 Rho4_like Rho4-like su 99.1 2.4E-10 5.2E-15 110.6 11.4 160 178-375 2-169 (187)
467 KOG0073|consensus 99.1 4.4E-10 9.4E-15 101.4 12.0 161 178-373 18-178 (185)
468 cd01891 TypA_BipA TypA (tyrosi 99.1 3.8E-10 8.1E-15 110.1 12.7 154 177-365 3-174 (194)
469 smart00174 RHO Rho (Ras homolo 99.1 1.9E-10 4E-15 109.8 10.2 168 179-371 1-170 (174)
470 cd01870 RhoA_like RhoA-like su 99.1 1.1E-10 2.4E-15 111.5 8.4 169 177-370 2-172 (175)
471 PF00025 Arf: ADP-ribosylation 99.1 7.6E-11 1.6E-15 113.0 7.2 157 178-371 16-174 (175)
472 cd04178 Nucleostemin_like Nucl 99.1 4.5E-11 9.8E-16 113.7 5.4 54 425-482 118-172 (172)
473 cd04126 Rab20 Rab20 subfamily. 99.1 3.8E-10 8.3E-15 111.8 12.2 170 178-374 2-191 (220)
474 COG1122 CbiO ABC-type cobalt t 99.1 1.1E-10 2.4E-15 116.0 8.1 152 165-325 19-186 (235)
475 KOG0090|consensus 99.1 1.6E-09 3.6E-14 102.2 15.0 175 425-619 39-237 (238)
476 TIGR00991 3a0901s02IAP34 GTP-b 99.1 6.9E-10 1.5E-14 113.3 13.5 148 425-582 39-191 (313)
477 cd04128 Spg1 Spg1p. Spg1p (se 99.1 5.2E-10 1.1E-14 107.9 12.0 156 178-373 2-166 (182)
478 COG1134 TagH ABC-type polysacc 99.1 2.4E-10 5.2E-15 111.0 9.5 130 163-308 40-174 (249)
479 PLN03071 GTP-binding nuclear p 99.1 4.5E-10 9.8E-15 111.6 11.9 155 178-373 15-172 (219)
480 cd01874 Cdc42 Cdc42 subfamily. 99.1 3.3E-10 7.1E-15 108.6 10.5 167 178-370 3-172 (175)
481 COG4604 CeuD ABC-type enteroch 99.1 1.2E-10 2.7E-15 108.6 7.1 153 167-329 18-187 (252)
482 cd01853 Toc34_like Toc34-like 99.1 7.5E-10 1.6E-14 111.5 13.3 126 425-560 32-163 (249)
483 cd04134 Rho3 Rho3 subfamily. 99.1 4.3E-10 9.2E-15 109.2 10.7 171 178-372 2-173 (189)
484 COG3638 ABC-type phosphate/pho 99.1 5.5E-10 1.2E-14 107.6 10.8 146 166-326 20-196 (258)
485 KOG0077|consensus 99.1 8.4E-10 1.8E-14 99.7 11.1 166 424-618 20-190 (193)
486 cd01884 EF_Tu EF-Tu subfamily. 99.1 2.3E-10 5E-15 111.3 8.3 151 178-361 4-171 (195)
487 COG2895 CysN GTPases - Sulfate 99.1 6.5E-10 1.4E-14 112.2 11.6 177 423-640 5-215 (431)
488 PRK13537 nodulation ABC transp 99.1 4.5E-10 9.8E-15 117.3 11.0 141 165-323 22-184 (306)
489 cd01882 BMS1 Bms1. Bms1 is an 99.1 3.3E-09 7.3E-14 105.7 16.3 143 422-606 37-182 (225)
490 COG4152 ABC-type uncharacteriz 99.1 1.1E-09 2.4E-14 105.6 12.2 163 164-369 16-201 (300)
491 cd03269 ABC_putative_ATPase Th 99.1 1.1E-09 2.3E-14 108.2 12.6 140 166-323 16-174 (210)
492 COG4555 NatA ABC-type Na+ tran 99.1 6.7E-10 1.4E-14 104.2 10.2 132 166-318 18-174 (245)
493 TIGR00487 IF-2 translation ini 99.1 3.5E-10 7.7E-15 127.0 10.1 160 176-369 87-246 (587)
494 TIGR00157 ribosome small subun 99.1 2.5E-10 5.5E-15 115.1 8.0 144 252-486 34-185 (245)
495 TIGR00960 3a0501s02 Type II (G 99.1 8.7E-10 1.9E-14 109.4 11.7 141 165-323 18-184 (216)
496 cd04130 Wrch_1 Wrch-1 subfamil 99.1 5.7E-10 1.2E-14 106.6 10.0 168 178-369 2-170 (173)
497 PRK09435 membrane ATPase/prote 99.1 2.5E-09 5.5E-14 111.5 15.4 113 473-623 150-262 (332)
498 TIGR01188 drrA daunorubicin re 99.1 7E-10 1.5E-14 115.8 11.4 140 166-323 9-170 (302)
499 cd03293 ABC_NrtD_SsuB_transpor 99.1 8.3E-10 1.8E-14 109.9 11.4 140 166-323 20-177 (220)
500 COG3845 ABC-type uncharacteriz 99.1 1.1E-09 2.5E-14 115.7 12.6 240 168-448 22-308 (501)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=9.1e-79 Score=603.43 Aligned_cols=310 Identities=38% Similarity=0.661 Sum_probs=286.6
Q ss_pred CceeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCC
Q psy1086 41 SRFLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHR 107 (654)
Q Consensus 41 ~~f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~ 107 (654)
|+|||+++|+|+||+|||||+| +|||||+||||||+|++++ ||.+|++ +++|+|+||++|++++
T Consensus 1 m~FvD~~~I~v~aG~GGnG~VSFrREK~vp~GGPdGGdGG~GGsV~~~ad~~l~TL~d~r~---~~~f~A~~G~~G~~~~ 77 (369)
T COG0536 1 MKFVDEVKIEVKAGDGGNGCVSFRREKFVPKGGPDGGDGGRGGSVIFEADENLNTLIDFRY---KKHFKAENGENGMGRN 77 (369)
T ss_pred CCcceEEEEEEEecCCCCeeEEEEhhhcCccCCCCCCCCCCCceEEEEEcCCcccHhhhcc---ceEEEccCCCCCCCCC
Confidence 6899999999999999999964 7999999999999999999 9999985 8999999999999999
Q ss_pred cCCCCCCCEEEEcCCCcEEEec-CcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEe
Q psy1086 108 LAGRNGEDKILELPVGITAYAD-GGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELK 174 (654)
Q Consensus 108 ~~g~~g~~~~~~vp~gt~v~~~-~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk 174 (654)
++|++|+|++|+||+||+|+|. ++++|+||++++|++++|+||+||+||++| .|+|||+++|.||||
T Consensus 78 ~~G~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELK 157 (369)
T COG0536 78 RTGAKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELK 157 (369)
T ss_pred CCCCCCCceEEEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEe
Confidence 9999999999999999999997 599999999999999999999999999999 599999999999999
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.+|+|||||+||||||||++++|.++|+|++|||||+.|++|+|...+..+|+++|+||+|++|+++.+++.+|++|++|
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999987777899999999999999999999999999999
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
|.+++||+|++.. +.++|.+++..++.||..|...|..+|.++|+||+|+...++.++.+.+.+.....
T Consensus 238 t~vL~hviD~s~~------~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~----- 306 (369)
T COG0536 238 TRVLLHVIDLSPI------DGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG----- 306 (369)
T ss_pred hheeEEEEecCcc------cCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC-----
Confidence 9999999999853 44789999999999999999999999999999999987777777777776654211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 376 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~ 376 (654)
+...+++||.++ +++++|+..+.+++....
T Consensus 307 -----------~~~~~~ISa~t~-~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 307 -----------WEVFYLISALTR-EGLDELLRALAELLEETK 336 (369)
T ss_pred -----------CCcceeeehhcc-cCHHHHHHHHHHHHHHhh
Confidence 112223999999 999999999999887764
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=5.1e-66 Score=538.83 Aligned_cols=302 Identities=40% Similarity=0.720 Sum_probs=271.1
Q ss_pred ceeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCCc
Q psy1086 42 RFLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHRL 108 (654)
Q Consensus 42 ~f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~~ 108 (654)
+|||+++|+|+||+|||||++ +|||||+||||||++++++ ||.++++ +++|+|+||++|+++++
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~f~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~---~~~~~a~~g~~g~~~~~ 77 (335)
T PRK12299 1 KFIDEAKIYVKAGDGGNGCVSFRREKFIPFGGPDGGDGGRGGSVILEADENLNTLIDFRY---KRHFKAENGENGMGRNR 77 (335)
T ss_pred CceEEEEEEEEecCCCCceeeEehhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcC---ccEEECCCCCCCCCCCC
Confidence 599999999999999999974 6999999999999999999 9999975 78999999999999999
Q ss_pred CCCCCCCEEEEcCCCcEEEe-cCcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEee
Q psy1086 109 AGRNGEDKILELPVGITAYA-DGGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELKL 175 (654)
Q Consensus 109 ~g~~g~~~~~~vp~gt~v~~-~~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk~ 175 (654)
+|++|+|++|+||+||+|+| +++++++||.++++++++|+||+||+||.+| .|++||++.+.||||.
T Consensus 78 ~g~~g~d~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~ 157 (335)
T PRK12299 78 TGKSGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKL 157 (335)
T ss_pred CCCCCCceEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEcc
Confidence 99999999999999999999 5789999999999999999999999999998 3999999999999999
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+++|+|||+|||||||||++|++++|++++|||||+.|+.|.+.+.+..+++++|+||++++++.+.++++.|++|++++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999866567999999999999999999999999999999
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHH-HHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDG-IRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~-l~~~~~~l~~~i~~~ 334 (654)
+++++|+|+++. .+.+.+..+..++..|...+..+|.++|+||+|+......... +.......
T Consensus 238 ~vlI~ViD~s~~---------~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~------- 301 (335)
T PRK12299 238 RLLLHLVDIEAV---------DPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAAL------- 301 (335)
T ss_pred CEEEEEEcCCCC---------CCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhc-------
Confidence 999999999742 2577888888999999887889999999999999765433322 21111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++++||+++ ++++++++.+.+.+..
T Consensus 302 ----------~-~~i~~iSAktg-~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 302 ----------G-GPVFLISAVTG-EGLDELLRALWELLEE 329 (335)
T ss_pred ----------C-CCEEEEEcCCC-CCHHHHHHHHHHHHHh
Confidence 0 26899999999 9999999999887654
No 3
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=4.8e-66 Score=550.97 Aligned_cols=303 Identities=42% Similarity=0.753 Sum_probs=274.0
Q ss_pred ceeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCCc
Q psy1086 42 RFLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHRL 108 (654)
Q Consensus 42 ~f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~~ 108 (654)
+|||+++|+|+||+|||||++ +|||||+||||||++|+++ ||.+|++ +++|+|+||++|+++++
T Consensus 1 ~f~D~~~i~v~aG~GG~G~~sf~rek~~~~ggp~gG~GG~GG~v~~~~~~~~~tl~~~~~---~~~~~a~~G~~g~~~~~ 77 (424)
T PRK12297 1 MFIDQAKIYVKAGDGGDGMVSFRREKYVPKGGPDGGDGGKGGSVIFVADEGLRTLLDFRY---KRHFKAENGENGMGKNM 77 (424)
T ss_pred CceEEEEEEEEecCCCCceeeEEhhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcC---ccEEEcCCCCCCCCCCC
Confidence 599999999999999999974 6999999999999999999 9999974 78999999999999999
Q ss_pred CCCCCCCEEEEcCCCcEEEe-cCcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEee
Q psy1086 109 AGRNGEDKILELPVGITAYA-DGGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELKL 175 (654)
Q Consensus 109 ~g~~g~~~~~~vp~gt~v~~-~~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk~ 175 (654)
+|++|+|++|+||+||+|+| +++++++||.++++++++|+||+||+||++| .|+|||++.+.||||.
T Consensus 78 ~G~~g~d~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~ 157 (424)
T PRK12297 78 HGRNGEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKL 157 (424)
T ss_pred CCCCCCeeEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecc
Confidence 99999999999999999999 5899999999999999999999999999999 4999999999999999
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+++|+|||+|||||||||++|++++|+|++|||||+.|+.|.+.+.+..+++++|+||++++++.+.++++.|++|++++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999875568999999999999999999999999999999
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++++|+|+++. ..+.+.+++..+..++..|...+..+|.++|+||+|+....+.++.+.+.+.
T Consensus 238 ~llI~VID~s~~------~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~---------- 301 (424)
T PRK12297 238 RVIVHVIDMSGS------EGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG---------- 301 (424)
T ss_pred CEEEEEEeCCcc------ccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC----------
Confidence 999999999742 2357888899999999999888889999999999998544333333322211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
.+++++||+++ +++++|++.+.+.+...
T Consensus 302 -----------~~i~~iSA~tg-eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 302 -----------PKVFPISALTG-QGLDELLYAVAELLEET 329 (424)
T ss_pred -----------CcEEEEeCCCC-CCHHHHHHHHHHHHHhC
Confidence 25899999999 99999999998776543
No 4
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=6.9e-66 Score=554.93 Aligned_cols=307 Identities=37% Similarity=0.642 Sum_probs=276.6
Q ss_pred CceeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCC
Q psy1086 41 SRFLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHR 107 (654)
Q Consensus 41 ~~f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~ 107 (654)
++|||+++|+|+||+|||||++ +|||||+||||||++|+++ ||.+|++ ++||+|+||++|++++
T Consensus 2 ~~fvD~~~i~v~aG~GG~G~~sf~rek~~~~ggpdGG~GG~GG~v~~~~~~~~~tl~~~~~---~~~~~a~~G~~G~~~~ 78 (500)
T PRK12296 2 PRFVDRVVLHVKAGDGGNGCASVHREKFKPLGGPDGGNGGRGGSVVLVVDPQVTTLLDFHF---RPHRKATNGKPGMGDN 78 (500)
T ss_pred CCcEEEEEEEEEecCCCCcceeeehhhcccCCCCCCCCCCCCCEEEEEECCCcCchHHhcc---CceEECCCCCCCCCCC
Confidence 5799999999999999999975 6999999999999999999 9999874 7899999999999999
Q ss_pred cCCCCCCCEEEEcCCCcEEEecCcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEee
Q psy1086 108 LAGRNGEDKILELPVGITAYADGGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELKL 175 (654)
Q Consensus 108 ~~g~~g~~~~~~vp~gt~v~~~~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk~ 175 (654)
++|++|+|++|+||+||+|+|++|++|+||.++++++++|+||+||+||.+| .|+|||+++|.||||.
T Consensus 79 ~~G~~g~d~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~ 158 (500)
T PRK12296 79 RDGAAGEDLVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKS 158 (500)
T ss_pred CCCCCCCceEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999 3999999999999999
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.++|+|||+||||||||+|+|++++|+|++|||||+.|+.|.+.+.+ .+|+++|+||+++++++..++++.|++|+++|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~-~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD-TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC-eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999877 48999999999999999899999999999999
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH---------hhcCcceeEeecccCccchHhHHHHHHHHHhc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM---------NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHN 326 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~---------~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~ 326 (654)
+++++|+|+++. ...++++.++..+..++..|.. .+..+|.++|+||+|++...+..+.+.+.+..
T Consensus 238 dvLv~VVD~s~~-----e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~ 312 (500)
T PRK12296 238 AVLVHVVDCATL-----EPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA 312 (500)
T ss_pred CEEEEEECCccc-----ccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH
Confidence 999999999742 1224677888888899988876 56789999999999997655544444433321
Q ss_pred cccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 327 l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
. + .+++++||.++ +++++|+..|.+.+...
T Consensus 313 ~-----------------g-~~Vf~ISA~tg-eGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 313 R-----------------G-WPVFEVSAASR-EGLRELSFALAELVEEA 342 (500)
T ss_pred c-----------------C-CeEEEEECCCC-CCHHHHHHHHHHHHHhh
Confidence 1 1 26899999999 99999999998887654
No 5
>KOG1489|consensus
Probab=100.00 E-value=1.3e-65 Score=502.37 Aligned_cols=300 Identities=42% Similarity=0.746 Sum_probs=273.0
Q ss_pred ceeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCCChhhhhhhcCCceEEcCCCCCCCcCCcC
Q psy1086 42 RFLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGASLESVKKQFKGVRITAASGDNSLVHRLA 109 (654)
Q Consensus 42 ~f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~~~~~~~~~~~~~~~~a~~g~~g~~~~~~ 109 (654)
.|+|..+|.++||+||+||++ +|||||+||+|||+|.+. ++.++. +....++|++|++|+..+++
T Consensus 40 ~fiD~~rv~~kgG~GG~G~ssf~~~~~~~~g~PdGGdGG~GG~V~~~a~~~-~~~~l~--~~~s~~~a~~Ge~~~s~~~~ 116 (366)
T KOG1489|consen 40 NFIDKRRVRIKGGSGGSGASSFFRGYRRPRGGPDGGDGGNGGHVYFVAKPG-AFKQLS--HVGSLIQAPNGENGKSKMCH 116 (366)
T ss_pred hhheeeeEEeeccCCCCccchhhhhcccccCCCCCCCCCCCceEEEEeCcc-cccccc--cCCceEEccCCCcCcccccc
Confidence 899999999999999999964 799999999999999953 233333 24679999999999999999
Q ss_pred CCCCCCEEEEcCCCcEEEe-cCcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEeec
Q psy1086 110 GRNGEDKILELPVGITAYA-DGGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELKLI 176 (654)
Q Consensus 110 g~~g~~~~~~vp~gt~v~~-~~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk~~ 176 (654)
|++|++.+|+||+||+|.| +.+.++++|+++++++++|+||.||+||.+| .|.+|+++.+.||||.+
T Consensus 117 g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arGG~GG~gn~~fls~~~r~p~~~~~G~~G~e~~~~lELKsi 196 (366)
T KOG1489|consen 117 GSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARGGEGGKGNKFFLSNENRSPKFSKPGLNGEERVIELELKSI 196 (366)
T ss_pred CCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEeecCCCCccceeeccccccCcccccCCCCCceEEEEEEeeee
Confidence 9999999999999999999 7899999999999999999999999999988 38889999999999999
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
++|||||+|||||||||++|++++|+|++|+|||+.|++|.+.+++..+++++|+||+|+++|.++++++.|++|+|||+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.++||+|+++.++ +.|++++..+..|+..|...|..+|.++|+||+|++..+.. ++.+.+.++.
T Consensus 277 ~l~fVvD~s~~~~------~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~--------- 341 (366)
T KOG1489|consen 277 GLLFVVDLSGKQL------RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN--------- 341 (366)
T ss_pred eEEEEEECCCccc------CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC---------
Confidence 9999999997532 68999999999999999999999999999999999644433 3555554442
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.+++++||+++ +++++|++.|.+.
T Consensus 342 -----------~~V~pvsA~~~-egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 -----------PHVVPVSAKSG-EGLEELLNGLREL 365 (366)
T ss_pred -----------CcEEEeeeccc-cchHHHHHHHhhc
Confidence 25999999999 9999999988753
No 6
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=4.5e-65 Score=541.74 Aligned_cols=308 Identities=36% Similarity=0.629 Sum_probs=275.2
Q ss_pred CceeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCC
Q psy1086 41 SRFLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHR 107 (654)
Q Consensus 41 ~~f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~ 107 (654)
|+|||+++|+|+||+|||||++ +|||||+||||||++++++ ||.++++ +++|+|+||++|++++
T Consensus 1 ~~f~D~~~i~~~~G~GG~g~~~f~r~~~~~~ggp~gg~GG~Gg~v~~~~~~~~~~l~~~~~---~~~~~a~~G~~g~~~~ 77 (390)
T PRK12298 1 MKFVDEAKIRVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVYLEADENLNTLIDYRF---ERHFRAERGQNGQGRD 77 (390)
T ss_pred CCceEEEEEEEEecCCCCceeeEehhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcC---CceEEcCCCCCCCCCC
Confidence 4799999999999999999975 6999999999999999999 9999984 7899999999999999
Q ss_pred cCCCCCCCEEEEcCCCcEEEe-cCcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEe
Q psy1086 108 LAGRNGEDKILELPVGITAYA-DGGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELK 174 (654)
Q Consensus 108 ~~g~~g~~~~~~vp~gt~v~~-~~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk 174 (654)
++|++|+|++|+||+||+|+| +++++++||.++++++++|+||+||+||++| .|+|||++.+.|+||
T Consensus 78 ~~g~~g~d~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk 157 (390)
T PRK12298 78 CTGKRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELK 157 (390)
T ss_pred CCCCCCCceEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeee
Confidence 999999999999999999998 6789999999999999999999999999998 399999999999999
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.+++|+|||+||||||||+|+|+++++.+++|||||+.|..|.+.+.+..+++++||||++++++.+.+++..|++|+++
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999987655699999999999998888899999999999
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++++++|+|++.. +...+.+.++.+.+++..|...+..+|.++|+||+|+....+..+.+.+..+..
T Consensus 238 advlL~VVD~s~~------~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~------- 304 (390)
T PRK12298 238 CRVLLHLIDIAPI------DGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL------- 304 (390)
T ss_pred CCEEEEEeccCcc------cccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh-------
Confidence 9999999998732 124577888899999999988888999999999999976554433333222210
Q ss_pred CCccchhhhccc-ceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 335 PEEFQPEKVIKF-QSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 335 ~~~~~~~~~~~~-~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
.+ ..++++||+++ .+++++++.|.+.++..
T Consensus 305 ----------~~~~~Vi~ISA~tg-~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 305 ----------GWEGPVYLISAASG-LGVKELCWDLMTFIEEN 335 (390)
T ss_pred ----------CCCCCEEEEECCCC-cCHHHHHHHHHHHhhhC
Confidence 11 15899999999 99999999999887653
No 7
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=4.4e-64 Score=524.24 Aligned_cols=302 Identities=40% Similarity=0.727 Sum_probs=271.7
Q ss_pred eeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCCcC
Q psy1086 43 FLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHRLA 109 (654)
Q Consensus 43 f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~~~ 109 (654)
|||+++|+|+||+||+||++ +|||||+||||||++++++ ||.++++ +++|+|+||++|++++++
T Consensus 1 f~D~~~i~~~~g~gg~g~~~f~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~---~~~~~a~~g~~g~~~~~~ 77 (329)
T TIGR02729 1 FVDEAKIFVKAGDGGNGCVSFRREKYVPKGGPDGGDGGRGGSVILEADENLNTLLDFRY---QRHFKAENGENGMGKNRT 77 (329)
T ss_pred CeEEEEEEEEecCCCCceeeEEeeccccCCCCCCCCCCCCCEEEEEECCCcChhhhccC---CcEEEcCCCCCCCCCCCC
Confidence 89999999999999999974 6999999999999999999 9999974 789999999999999999
Q ss_pred CCCCCCEEEEcCCCcEEEec-CcceeccccccCcEEEEeccCcCCCCCCCCc------------ccccceeeEEEEEeec
Q psy1086 110 GRNGEDKILELPVGITAYAD-GGTKLGELNTEEDSIIIAHGGAGGNAQNGWL------------GRKGEELAVRLELKLI 176 (654)
Q Consensus 110 g~~g~~~~~~vp~gt~v~~~-~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f~------------g~~Ge~~~i~L~lk~~ 176 (654)
|++|+|++|+||+||+|+|. ++++++||.++++++++|+||+||+||.+|. |++||++.+.||||.+
T Consensus 78 g~~g~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~ 157 (329)
T TIGR02729 78 GKNGEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLL 157 (329)
T ss_pred CCCCCceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEEeecc
Confidence 99999999999999999995 7899999999999999999999999999993 9999999999999999
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
++|+|||+||||||||+++|+++++.+++|||||+.|+.|.+.+++..+++++|+||++++++.+.++++.|++|+++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999998775689999999999999998899999999999999
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
++++|+|++.. ....+++.+..+.+++..|...+..+|.++|+||+|+..... .+.+.+.+.+.
T Consensus 238 ~ll~VvD~s~~------~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~--------- 301 (329)
T TIGR02729 238 VLLHLIDISPL------DGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKA--------- 301 (329)
T ss_pred EEEEEEcCccc------cccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHH---------
Confidence 99999998742 124688899999999999988888999999999999976543 23333322210
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ ..++++||+++ ++++++++++.+.+
T Consensus 302 -------~~-~~vi~iSAktg-~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 -------LG-KPVFPISALTG-EGLDELLYALAELL 328 (329)
T ss_pred -------cC-CcEEEEEccCC-cCHHHHHHHHHHHh
Confidence 01 25899999999 99999999987654
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=2e-42 Score=359.45 Aligned_cols=343 Identities=24% Similarity=0.302 Sum_probs=260.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecCcccccc--cccccchHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA--HRNLGMGHQFLRHVE 253 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~--~~~~~l~~~~l~~i~ 253 (654)
..|+|||+||+|||||+|+|+|.+.+| +++|++|+++..+...+.+. .|.++||+|+.... .....+..+.+..++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~-~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR-EFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc-eEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 469999999999999999999987765 69999999999999999984 69999999998655 344556778889999
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
++|++++|+|.... +.....++..+.. -..+|.++|+||+|-...+....++
T Consensus 83 eADvilfvVD~~~G--------------it~~D~~ia~~Lr-~~~kpviLvvNK~D~~~~e~~~~ef------------- 134 (444)
T COG1160 83 EADVILFVVDGREG--------------ITPADEEIAKILR-RSKKPVILVVNKIDNLKAEELAYEF------------- 134 (444)
T ss_pred hCCEEEEEEeCCCC--------------CCHHHHHHHHHHH-hcCCCEEEEEEcccCchhhhhHHHH-------------
Confidence 99999999998731 1122334444444 3679999999999987433322211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCc
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGE 413 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 413 (654)
+.+++.+++++||.++ .|+.+|++.+.+.++ ......... .
T Consensus 135 --------yslG~g~~~~ISA~Hg-~Gi~dLld~v~~~l~-~~e~~~~~~-----------------------------~ 175 (444)
T COG1160 135 --------YSLGFGEPVPISAEHG-RGIGDLLDAVLELLP-PDEEEEEEE-----------------------------E 175 (444)
T ss_pred --------HhcCCCCceEeehhhc-cCHHHHHHHHHhhcC-Ccccccccc-----------------------------c
Confidence 1345678999999999 999999999987764 211110000 0
Q ss_pred ceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccc-
Q psy1086 414 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLG- 491 (654)
Q Consensus 414 ~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~- 491 (654)
....+++++|.+|+|||||+|+++++++.+ ++.++||++.....+.+++ +++.++||||+.+.....+.
T Consensus 176 --------~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~-~~~~liDTAGiRrk~ki~e~~ 246 (444)
T COG1160 176 --------TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG-RKYVLIDTAGIRRKGKITESV 246 (444)
T ss_pred --------CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-eEEEEEECCCCCcccccccce
Confidence 123699999999999999999999998876 5689999999999999998 58999999999877655442
Q ss_pred ---hhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH-HHHHH
Q psy1086 492 ---MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ-EIYDG 567 (654)
Q Consensus 492 ---~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~-~v~~~ 567 (654)
....+...+..|+++++|+|++ .++++||.. +..+ ....++++|||+||||+.+.+ ...++
T Consensus 247 E~~Sv~rt~~aI~~a~vvllviDa~---~~~~~qD~~-----------ia~~-i~~~g~~~vIvvNKWDl~~~~~~~~~~ 311 (444)
T COG1160 247 EKYSVARTLKAIERADVVLLVIDAT---EGISEQDLR-----------IAGL-IEEAGRGIVIVVNKWDLVEEDEATMEE 311 (444)
T ss_pred EEEeehhhHhHHhhcCEEEEEEECC---CCchHHHHH-----------HHHH-HHHcCCCeEEEEEccccCCchhhHHHH
Confidence 2256778999999999999999 344444322 1111 123579999999999987652 33333
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAE 625 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~ 625 (654)
..+.+.. .+ .+..+++++++||++|+ ++.+||+.+.+.++....
T Consensus 312 ~k~~i~~---~l----------~~l~~a~i~~iSA~~~~-~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 312 FKKKLRR---KL----------PFLDFAPIVFISALTGQ-GLDKLFEAIKEIYECATR 355 (444)
T ss_pred HHHHHHH---Hh----------ccccCCeEEEEEecCCC-ChHHHHHHHHHHHHHhcc
Confidence 3333322 22 44788999999999999 999999999999976544
No 9
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.3e-35 Score=327.01 Aligned_cols=340 Identities=19% Similarity=0.225 Sum_probs=228.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCccccccc-ccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~-~~~~l~~~~l~~i~~ 254 (654)
.+|+|||.||||||||+|+|++... .+.+.|++|.+...+.+.+.+ ..+.++||||+..... ....+......++..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 4799999999999999999998764 356788999988888888876 4799999999753211 111223334556778
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
+|++++|+|++... .. .. ..+...+. ...+|.++|+||+|+........ +...
T Consensus 118 aD~il~VvD~~~~~--------s~-~~-~~i~~~l~-----~~~~piilV~NK~Dl~~~~~~~~---~~~~--------- 170 (472)
T PRK03003 118 ADAVLFVVDATVGA--------TA-TD-EAVARVLR-----RSGKPVILAANKVDDERGEADAA---ALWS--------- 170 (472)
T ss_pred CCEEEEEEECCCCC--------CH-HH-HHHHHHHH-----HcCCCEEEEEECccCCccchhhH---HHHh---------
Confidence 99999999997420 11 11 11111111 15789999999999864321111 1111
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcc
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEE 414 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 414 (654)
.++..++++||+++ .|++++++.+.+.+...... . . .
T Consensus 171 ---------~g~~~~~~iSA~~g-~gi~eL~~~i~~~l~~~~~~------~--~---------------------~---- 207 (472)
T PRK03003 171 ---------LGLGEPHPVSALHG-RGVGDLLDAVLAALPEVPRV------G--S---------------------A---- 207 (472)
T ss_pred ---------cCCCCeEEEEcCCC-CCcHHHHHHHHhhccccccc------c--c---------------------c----
Confidence 11234689999999 99999999987665321000 0 0 0
Q ss_pred eeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc---
Q psy1086 415 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL--- 490 (654)
Q Consensus 415 ~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~--- 490 (654)
.....+|+++|.+|+|||||+|+|++..+. .+..+++|.++....+.+++ ..+.+|||||+.+......
T Consensus 208 ------~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~-~~~~l~DTaG~~~~~~~~~~~e 280 (472)
T PRK03003 208 ------SGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG-KTWRFVDTAGLRRRVKQASGHE 280 (472)
T ss_pred ------cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-EEEEEEECCCccccccccchHH
Confidence 001258999999999999999999998764 46789999999888888877 4799999999866543321
Q ss_pred chh-HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHH
Q psy1086 491 GMG-HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIR 569 (654)
Q Consensus 491 ~~~-~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~ 569 (654)
.+. .....+++.||++++|+|++ +..+++.+..+ ..+. ..++|+|||+||||+.+.... ....
T Consensus 281 ~~~~~~~~~~i~~ad~vilV~Da~---------~~~s~~~~~~~-~~~~-----~~~~piIiV~NK~Dl~~~~~~-~~~~ 344 (472)
T PRK03003 281 YYASLRTHAAIEAAEVAVVLIDAS---------EPISEQDQRVL-SMVI-----EAGRALVLAFNKWDLVDEDRR-YYLE 344 (472)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCC---------CCCCHHHHHHH-HHHH-----HcCCCEEEEEECcccCChhHH-HHHH
Confidence 111 12345789999999999998 33344444322 2221 247899999999999753221 1111
Q ss_pred HHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 570 DTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
+.+ .+.+ ....+++++++||++|. ||+++|+.+.+.+....
T Consensus 345 ~~i---~~~l----------~~~~~~~~~~~SAk~g~-gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 345 REI---DREL----------AQVPWAPRVNISAKTGR-AVDKLVPALETALESWD 385 (472)
T ss_pred HHH---HHhc----------ccCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHhc
Confidence 111 1111 11234678999999999 99999999999887543
No 10
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=1.9e-35 Score=324.18 Aligned_cols=339 Identities=22% Similarity=0.298 Sum_probs=233.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCccccccc-ccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~-~~~~l~~~~l~~i~~~ 255 (654)
+|+|||+||+|||||+|.|++.... +.++|++|.++..+.+.+.+ ..+.++||||+..... ....+..+...+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-REFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 4899999999999999999997653 56899999999999998876 5799999999753221 1122334556667788
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
|++++|+|.... ... . ..++..+.+. ..+|.++|+||+|....+....++ .
T Consensus 80 d~vl~vvD~~~~--------~~~-~-----d~~i~~~l~~-~~~piilVvNK~D~~~~~~~~~~~----~---------- 130 (429)
T TIGR03594 80 DVILFVVDGREG--------LTP-E-----DEEIAKWLRK-SGKPVILVANKIDGKKEDAVAAEF----Y---------- 130 (429)
T ss_pred CEEEEEEeCCCC--------CCH-H-----HHHHHHHHHH-hCCCEEEEEECccCCcccccHHHH----H----------
Confidence 899999998631 011 1 1112222222 478999999999987543322111 1
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcce
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEEL 415 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 415 (654)
..++.+++++||.++ .++.++++.+.+.+........
T Consensus 131 -------~lg~~~~~~vSa~~g-~gv~~ll~~i~~~l~~~~~~~~----------------------------------- 167 (429)
T TIGR03594 131 -------SLGFGEPIPISAEHG-RGIGDLLDAILELLPEEEEEEE----------------------------------- 167 (429)
T ss_pred -------hcCCCCeEEEeCCcC-CChHHHHHHHHHhcCccccccc-----------------------------------
Confidence 123346899999999 9999999988765532110000
Q ss_pred eeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchh-
Q psy1086 416 AVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG- 493 (654)
Q Consensus 416 ~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~- 493 (654)
.-....+|+++|.+++|||||++++++.... ....+++|.++....+.+++ ..+.+|||||+.+.........
T Consensus 168 ----~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~e~ 242 (429)
T TIGR03594 168 ----EEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-KKYLLIDTAGIRRKGKVTEGVEK 242 (429)
T ss_pred ----ccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC-cEEEEEECCCccccccchhhHHH
Confidence 0011258999999999999999999987654 46688999999888888876 4899999999987665432211
Q ss_pred ---HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHH
Q psy1086 494 ---HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRD 570 (654)
Q Consensus 494 ---~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~ 570 (654)
..+..+++.||++++|+|+++ ..+.+....+ ..+ ...++|+|+|+||||+.+.....+++.+
T Consensus 243 ~~~~~~~~~~~~ad~~ilV~D~~~---------~~~~~~~~~~-~~~-----~~~~~~iiiv~NK~Dl~~~~~~~~~~~~ 307 (429)
T TIGR03594 243 YSVLRTLKAIERADVVLLVLDATE---------GITEQDLRIA-GLI-----LEAGKALVIVVNKWDLVKDEKTREEFKK 307 (429)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCC---------CccHHHHHHH-HHH-----HHcCCcEEEEEECcccCCCHHHHHHHHH
Confidence 334578899999999999983 2223332221 211 1246899999999999833222222222
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.+. +.+ ....+++++++||++|+ ||+++|+.+.+.+...
T Consensus 308 ~~~---~~~----------~~~~~~~vi~~SA~~g~-~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 308 ELR---RKL----------PFLDFAPIVFISALTGQ-GVDKLLDAIDEVYENA 346 (429)
T ss_pred HHH---Hhc----------ccCCCCceEEEeCCCCC-CHHHHHHHHHHHHHHh
Confidence 222 111 11345689999999999 9999999999987654
No 11
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=100.00 E-value=2.7e-37 Score=283.84 Aligned_cols=130 Identities=37% Similarity=0.653 Sum_probs=70.4
Q ss_pred eeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCCcC
Q psy1086 43 FLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHRLA 109 (654)
Q Consensus 43 f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~~~ 109 (654)
|||+++|+|+||+|||||++ +|||||+||||||++++++ ||.++++ .++|+|++|++|++++++
T Consensus 1 FvD~~~i~v~~G~GG~G~~sf~r~~~~~~ggp~GG~GG~GG~V~l~~~~~~~sL~~~~~---~~~~~A~~G~~G~~~~~~ 77 (156)
T PF01018_consen 1 FVDRVRIKVRGGNGGNGCVSFRREKYVPKGGPDGGNGGNGGDVYLVADENVNSLLDLKN---KKHYKAENGENGKSRNCH 77 (156)
T ss_dssp EECEEEEEEE----------EEEETTCCEEEE----------EEEEE-TT--SSCCCGT---SSEEE-------BTTTB-
T ss_pred CeEEEEEEEEecCCcCCEEeEEeeccccCCCCCCCCCCCCceeEEEecccccchhhcce---eeeEEcCCCCCCCCCccc
Confidence 99999999999999999986 5999999999999999999 8988864 689999999999999999
Q ss_pred CCCCCCEEEEcCCCcEEEe-cCcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEee
Q psy1086 110 GRNGEDKILELPVGITAYA-DGGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELKL 175 (654)
Q Consensus 110 g~~g~~~~~~vp~gt~v~~-~~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk~ 175 (654)
|++|+|++|+||+||+|+| +++++|+||.++++++++|+||+||+||.+| .|++||++.|.||||.
T Consensus 78 G~~G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~~~~~P~~~~~G~~Ge~~~l~LELK~ 156 (156)
T PF01018_consen 78 GKNGKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAHFKSSTNRAPRFATPGEPGEERKLELELKT 156 (156)
T ss_dssp ------EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGGC-BTTCSS--EEE------EEEEEEEEE-
T ss_pred ccCCCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCccccccccCCCCCCCCccCCCCCceEEEEEEEEeC
Confidence 9999999999999999999 6899999999999999999999999999988 5999999999999984
No 12
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1e-33 Score=310.76 Aligned_cols=339 Identities=21% Similarity=0.261 Sum_probs=230.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCccccccc-ccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~-~~~~l~~~~l~~i~~ 254 (654)
.+|+|||.||+|||||++.|++... .+.++|++|.+...+.+.+++ ..+.++||||+..... ....+......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-REFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-cEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 4699999999999999999999765 357899999999999998877 5899999999875221 111233445567788
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
+|++++|+|+.... .. . ..++..+... ...|.++++||+|.........+ ...
T Consensus 81 ad~il~vvd~~~~~--------~~-~-----~~~~~~~l~~-~~~piilv~NK~D~~~~~~~~~~---~~~--------- 133 (435)
T PRK00093 81 ADVILFVVDGRAGL--------TP-A-----DEEIAKILRK-SNKPVILVVNKVDGPDEEADAYE---FYS--------- 133 (435)
T ss_pred CCEEEEEEECCCCC--------CH-H-----HHHHHHHHHH-cCCcEEEEEECccCccchhhHHH---HHh---------
Confidence 89999999986310 11 1 1111122222 37899999999997543221111 111
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcc
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEE 414 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 414 (654)
.++..++++||.++ .+++++++.+.+...... . . . .
T Consensus 134 ---------lg~~~~~~iSa~~g-~gv~~l~~~I~~~~~~~~---~-------~-------------~----------~- 169 (435)
T PRK00093 134 ---------LGLGEPYPISAEHG-RGIGDLLDAILEELPEEE---E-------E-------------D----------E- 169 (435)
T ss_pred ---------cCCCCCEEEEeeCC-CCHHHHHHHHHhhCCccc---c-------c-------------c----------c-
Confidence 12235789999999 999999988875211100 0 0 0 0
Q ss_pred eeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchh
Q psy1086 415 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG 493 (654)
Q Consensus 415 ~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~ 493 (654)
-....+|+++|.+|+|||||+|++++.... .+..+++|++.....+.+++ ..+.+|||||+.+.......+.
T Consensus 170 ------~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~lvDT~G~~~~~~~~~~~e 242 (435)
T PRK00093 170 ------EDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG-QKYTLIDTAGIRRKGKVTEGVE 242 (435)
T ss_pred ------cccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC-eeEEEEECCCCCCCcchhhHHH
Confidence 012368999999999999999999987654 45688999988877777776 4799999999877655433221
Q ss_pred ----HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHH
Q psy1086 494 ----HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIR 569 (654)
Q Consensus 494 ----~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~ 569 (654)
..+..+++.||++++|+|++.. + +.+... +...+ ...++|+|+|+||||+.+... ..++.
T Consensus 243 ~~~~~~~~~~~~~ad~~ilViD~~~~---~------~~~~~~-i~~~~-----~~~~~~~ivv~NK~Dl~~~~~-~~~~~ 306 (435)
T PRK00093 243 KYSVIRTLKAIERADVVLLVIDATEG---I------TEQDLR-IAGLA-----LEAGRALVIVVNKWDLVDEKT-MEEFK 306 (435)
T ss_pred HHHHHHHHHHHHHCCEEEEEEeCCCC---C------CHHHHH-HHHHH-----HHcCCcEEEEEECccCCCHHH-HHHHH
Confidence 3345788999999999999832 2 222222 11211 124689999999999985432 22222
Q ss_pred HHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 570 DTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
+.+. ..+ ....+++++++||++|. ||+++|+.+.+.+....
T Consensus 307 ~~~~---~~l----------~~~~~~~i~~~SA~~~~-gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 307 KELR---RRL----------PFLDYAPIVFISALTGQ-GVDKLLEAIDEAYENAN 347 (435)
T ss_pred HHHH---Hhc----------ccccCCCEEEEeCCCCC-CHHHHHHHHHHHHHHHc
Confidence 2222 221 12345689999999999 99999999998876543
No 13
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=1.2e-33 Score=325.43 Aligned_cols=347 Identities=19% Similarity=0.226 Sum_probs=233.5
Q ss_pred EEEeecCcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCccccccc-ccccchHHH
Q psy1086 171 LELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQF 248 (654)
Q Consensus 171 L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~-~~~~l~~~~ 248 (654)
+.-.....|+|+|.||+|||||+|+|++.+.. +.++|++|.+...+...+.+ ..+.++||||+..... ....+..+.
T Consensus 270 ~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 270 AGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG-TDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred cccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC-EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 33445678999999999999999999997653 56889999998888888776 4799999999763211 112233445
Q ss_pred HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccc
Q psy1086 249 LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLK 328 (654)
Q Consensus 249 l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~ 328 (654)
...++.+|++++|+|+.... ... ..++..+.. -..+|.++|+||+|+....... .+...
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~--------~~~------d~~i~~~Lr-~~~~pvIlV~NK~D~~~~~~~~---~~~~~--- 407 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGL--------TST------DERIVRMLR-RAGKPVVLAVNKIDDQASEYDA---AEFWK--- 407 (712)
T ss_pred HHHHHhCCEEEEEEECCCCC--------CHH------HHHHHHHHH-hcCCCEEEEEECcccccchhhH---HHHHH---
Confidence 56678899999999986310 111 111111111 1579999999999986432211 11111
Q ss_pred cccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcc
Q psy1086 329 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWL 408 (654)
Q Consensus 329 ~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 408 (654)
.++..++++||+++ .|++++++.+.+.+...... . . .
T Consensus 408 ---------------lg~~~~~~iSA~~g-~GI~eLl~~i~~~l~~~~~~------~--~-------------------a 444 (712)
T PRK09518 408 ---------------LGLGEPYPISAMHG-RGVGDLLDEALDSLKVAEKT------S--G-------------------F 444 (712)
T ss_pred ---------------cCCCCeEEEECCCC-CCchHHHHHHHHhccccccc------c--c-------------------c
Confidence 11235689999999 99999999988765321000 0 0 0
Q ss_pred cCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc
Q psy1086 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~ 487 (654)
+.-....+|+++|.+|+|||||+|+|++..+. .+..+++|+++....+.+++. .+.+|||||+.+...
T Consensus 445 ----------~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~-~~~liDTaG~~~~~~ 513 (712)
T PRK09518 445 ----------LTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE-DWLFIDTAGIKRRQH 513 (712)
T ss_pred ----------cCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC-EEEEEECCCcccCcc
Confidence 00001258999999999999999999998764 467899999998888888874 799999999875433
Q ss_pred cccc---hh-HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH
Q psy1086 488 RNLG---MG-HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE 563 (654)
Q Consensus 488 ~~~~---~~-~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~ 563 (654)
.... +. .....+++.||++++|+|++. ..+.+.+..+ ..+. ..++|+|||+||||+.+...
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~---------~~s~~~~~i~-~~~~-----~~~~piIiV~NK~DL~~~~~ 578 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQ---------PISEQDLKVM-SMAV-----DAGRALVLVFNKWDLMDEFR 578 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCC---------CCCHHHHHHH-HHHH-----HcCCCEEEEEEchhcCChhH
Confidence 2221 11 123456889999999999983 3334444332 2221 24689999999999976432
Q ss_pred HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 564 IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.+.+.+.+.. .+ ....+.+++++||++|+ ||++||+.+.+.+...
T Consensus 579 -~~~~~~~~~~---~l----------~~~~~~~ii~iSAktg~-gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 579 -RQRLERLWKT---EF----------DRVTWARRVNLSAKTGW-HTNRLAPAMQEALESW 623 (712)
T ss_pred -HHHHHHHHHH---hc----------cCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHh
Confidence 1112211111 11 11345678999999999 9999999999988653
No 14
>KOG0084|consensus
Probab=99.94 E-value=1.3e-26 Score=214.10 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=141.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|++|||||+|+.+|....+......++++++....+.+++.. +++||||+|+ ++|+..+..|||+|
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ-------ERFrtit~syYR~a 82 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ-------ERFRTITSSYYRGA 82 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc-------HHHhhhhHhhccCC
Confidence 589999999999999999999999988889999999999999998754 8999999995 45667788999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++|+|||+| ++.||+.+..|..|+..+. ..++|.++|+||+|+.+.+.+..+..+.++.-
T Consensus 83 hGii~vyDiT---------~~~SF~~v~~Wi~Ei~~~~--~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~-------- 143 (205)
T KOG0084|consen 83 HGIIFVYDIT---------KQESFNNVKRWIQEIDRYA--SENVPKLLVGNKCDLTEKRVVSTEEAQEFADE-------- 143 (205)
T ss_pred CeEEEEEEcc---------cHHHhhhHHHHHHHhhhhc--cCCCCeEEEeeccccHhheecCHHHHHHHHHh--------
Confidence 9999999999 8899999999999998764 35789999999999998888877777666541
Q ss_pred CCCCccccccccc-eEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQS-ILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~-~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
...+ +++||||++. ||++.|..++..++.
T Consensus 144 ---------~~~~~f~ETSAK~~~-NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 144 ---------LGIPIFLETSAKDST-NVEDAFLTLAKELKQ 173 (205)
T ss_pred ---------cCCcceeecccCCcc-CHHHHHHHHHHHHHH
Confidence 2234 8999999999 999999999987764
No 15
>KOG0092|consensus
Probab=99.94 E-value=4.7e-26 Score=209.58 Aligned_cols=162 Identities=19% Similarity=0.107 Sum_probs=140.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.|++++|..+||||||+-++....+.....++++..+.+..+.+++.. ++.||||+|++++.+..+ .|||+|
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slap-------MYyRgA 78 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAP-------MYYRGA 78 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccc-------ceecCC
Confidence 589999999999999999999988877778999999999999888642 788999999999888777 899999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++|+|||++ +.+||+..+.|..+|+...+ .+.-+.||+||+||.+.+++..+..+.+++-+
T Consensus 79 ~AAivvYDit---------~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~------- 140 (200)
T KOG0092|consen 79 NAAIVVYDIT---------DEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAESQ------- 140 (200)
T ss_pred cEEEEEEecc---------cHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHhc-------
Confidence 9999999999 88999999999999987643 56777789999999988888777777777643
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+..+|++|||||. ||+++|..|++.+-.
T Consensus 141 ----------gll~~ETSAKTg~-Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 141 ----------GLLFFETSAKTGE-NVNEIFQAIAEKLPC 168 (200)
T ss_pred ----------CCEEEEEeccccc-CHHHHHHHHHHhccC
Confidence 3358999999999 999999999988743
No 16
>KOG0078|consensus
Probab=99.93 E-value=5.9e-25 Score=206.43 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=144.5
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.++||||+++-++..+.+..+...++++++....+.+++.+ .+++|||+| ++.++..+..|+|+
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG-------Qerf~ti~~sYyrg 84 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAG-------QERFRTITTAYYRG 84 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEccc-------chhHHHHHHHHHhh
Confidence 4589999999999999999999988887888889999999999998754 789999999 55577888899999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
|+++++|||++ ++.+|+.+..|.+.+..+.. .++|.+||+||+|+...+++..+-.+.++.
T Consensus 85 A~gi~LvyDit---------ne~Sfeni~~W~~~I~e~a~--~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~-------- 145 (207)
T KOG0078|consen 85 AMGILLVYDIT---------NEKSFENIRNWIKNIDEHAS--DDVVKILVGNKCDLEEKRQVSKERGEALAR-------- 145 (207)
T ss_pred cCeeEEEEEcc---------chHHHHHHHHHHHHHHhhCC--CCCcEEEeeccccccccccccHHHHHHHHH--------
Confidence 99999999999 89999999999999987644 379999999999999988888888877765
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+..+++||||+|. ||+|.|..+++.+..
T Consensus 146 ---------e~G~~F~EtSAk~~~-NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 146 ---------EYGIKFFETSAKTNF-NIEEAFLSLARDILQ 175 (207)
T ss_pred ---------HhCCeEEEccccCCC-CHHHHHHHHHHHHHh
Confidence 235578999999999 999999999998864
No 17
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=2.6e-24 Score=225.17 Aligned_cols=188 Identities=44% Similarity=0.708 Sum_probs=154.6
Q ss_pred ccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc
Q psy1086 408 LGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~ 487 (654)
.+.+++...+.|+++....|+++|.+|+|||||++++++....++++|+||+.+..+.+.+.+..++.+|||||+.+..+
T Consensus 142 ~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 142 PGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS 221 (335)
T ss_pred CCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC
Confidence 34566777889999999999999999999999999999988778889999999999999986555799999999998887
Q ss_pred cccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHH
Q psy1086 488 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 488 ~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~ 567 (654)
...++...+++++..|+++++|+|++ +.++++.+..|.+++..+.....++|++||+||+|+.+...+...
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s---------~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~ 292 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIE---------AVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREK 292 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCC---------CCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHH
Confidence 77778899999999999999999998 344688899999999877554457999999999999765443322
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.+.. . ...++|++||++++ ||++|++.|.+.+.+
T Consensus 293 ~~~~~~~--~---------------~~~~i~~iSAktg~-GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 293 RAALELA--A---------------LGGPVFLISAVTGE-GLDELLRALWELLEE 329 (335)
T ss_pred HHHHHHH--h---------------cCCCEEEEEcCCCC-CHHHHHHHHHHHHHh
Confidence 2211110 0 11358999999999 999999999987754
No 18
>KOG0094|consensus
Probab=99.93 E-value=6.8e-25 Score=201.51 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=138.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
-|++++|..+||||||+++++...+...+.+++++++....+++.+.. .+++|||||++++++.. ..|+|.+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli-------psY~Rds 95 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------PSYIRDS 95 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh-------hhhccCC
Confidence 489999999999999999999998888889999999999999988743 79999999976655544 4999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
.++++|||++ ++.+|+....|.+++.... +..++-++||+||.||.+.+++..+..+..+..
T Consensus 96 ~vaviVyDit---------~~~Sfe~t~kWi~dv~~e~-gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAke-------- 157 (221)
T KOG0094|consen 96 SVAVIVYDIT---------DRNSFENTSKWIEDVRRER-GSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKE-------- 157 (221)
T ss_pred eEEEEEEecc---------ccchHHHHHHHHHHHHhcc-CCCceEEEEEcccccccchhhhhHHHHHHHHHH--------
Confidence 9999999999 8999999999999886542 223477889999999999999888777655431
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.++.|+++||++|+ ||.+||..|+..+-..
T Consensus 158 ---------l~a~f~etsak~g~-NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 158 ---------LNAEFIETSAKAGE-NVKQLFRRIAAALPGM 187 (221)
T ss_pred ---------hCcEEEEecccCCC-CHHHHHHHHHHhccCc
Confidence 22358999999999 9999999998776443
No 19
>KOG0098|consensus
Probab=99.92 E-value=2.3e-24 Score=196.34 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=140.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.|+.++|+.|||||+|+.+++...+......++++++-...+.+++.+ +++||||+| ++.++..+..||+.|
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG-------qe~frsv~~syYr~a 79 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG-------QESFRSVTRSYYRGA 79 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC-------cHHHHHHHHHHhccC
Confidence 488999999999999999999987766667788889988999998744 899999999 455677778999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
.++|||||++ .+++|..+..|..++..+. ..|.-++|++||+||...+++.++..+.+++-
T Consensus 80 ~GalLVydit---------~r~sF~hL~~wL~D~rq~~--~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-------- 140 (216)
T KOG0098|consen 80 AGALLVYDIT---------RRESFNHLTSWLEDARQHS--NENMVIMLIGNKSDLEARREVSKEEGEAFARE-------- 140 (216)
T ss_pred cceEEEEEcc---------chhhHHHHHHHHHHHHHhc--CCCcEEEEEcchhhhhccccccHHHHHHHHHH--------
Confidence 9999999999 8999999999999988764 35789999999999999999999999988873
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
++..++++||+|++ ||+|+|..++..+-
T Consensus 141 ---------hgLifmETSakt~~-~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 141 ---------HGLIFMETSAKTAE-NVEEAFINTAKEIY 168 (216)
T ss_pred ---------cCceeehhhhhhhh-hHHHHHHHHHHHHH
Confidence 34458899999999 99999999986553
No 20
>KOG0394|consensus
Probab=99.91 E-value=1.9e-24 Score=196.57 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=141.1
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|.++|++|+|||||++++...+++.....+++.++.++.+.+++.. .++||||+|++++.+... ..||+
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~-------aFYRg 81 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV-------AFYRG 81 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc-------ceecC
Confidence 3699999999999999999999999988899999999999999998632 789999999888776664 67999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccCh--HHHHHHHHHHHHhhHhh
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGA--QEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~--~~v~~~~~~~~~~~~~~ 578 (654)
||.+++|||+. +.++|+.+..|.+|+..+.. ....-|+||++||+|+.+. +++.....+.+..-
T Consensus 82 aDcCvlvydv~---------~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s--- 149 (210)
T KOG0394|consen 82 ADCCVLVYDVN---------NPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS--- 149 (210)
T ss_pred CceEEEEeecC---------ChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh---
Confidence 99999999998 78999999999999876542 2235799999999998763 56666655555542
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
..++|||++|||... ||+++|+.+++.+-...
T Consensus 150 -------------~gnipyfEtSAK~~~-NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 150 -------------KGNIPYFETSAKEAT-NVDEAFEEIARRALANE 181 (210)
T ss_pred -------------cCCceeEEecccccc-cHHHHHHHHHHHHHhcc
Confidence 345799999999999 99999999998775443
No 21
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=5.9e-23 Score=214.87 Aligned_cols=187 Identities=44% Similarity=0.776 Sum_probs=151.9
Q ss_pred cCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
+.+++...+.|+++....|+++|.+|+|||||++++++....++++|++|..+..+.+.+++..++++|||||+.+..+.
T Consensus 142 g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 142 GEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE 221 (329)
T ss_pred CCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc
Confidence 45566778899999999999999999999999999999887788899999999999999887568999999999888776
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGI 568 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~ 568 (654)
...+...+++++..|+++++|+|+++.. ..++++.+..|.+++..+.....++|++||+||+|+.+.... +++
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~------~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~-~~~ 294 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLD------GRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEEL-AEL 294 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCcccc------ccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHH-HHH
Confidence 6678889999999999999999998321 236788888898888776544467999999999999765432 222
Q ss_pred HHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 569 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+.+.+ .. ..+++++||++++ ||++|++.|.+.+
T Consensus 295 ~~~l~~---~~--------------~~~vi~iSAktg~-GI~eL~~~I~~~l 328 (329)
T TIGR02729 295 LKELKK---AL--------------GKPVFPISALTGE-GLDELLYALAELL 328 (329)
T ss_pred HHHHHH---Hc--------------CCcEEEEEccCCc-CHHHHHHHHHHHh
Confidence 222221 11 1358999999999 9999999998764
No 22
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=9.5e-23 Score=217.48 Aligned_cols=194 Identities=40% Similarity=0.666 Sum_probs=153.9
Q ss_pred cCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
+.+++...+.|+++....|+++|.+|+|||||+|+|++....++++|+||+.+..+.+.+.+.+.+.++||||+.+..+.
T Consensus 144 g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 144 GTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE 223 (390)
T ss_pred CCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc
Confidence 44566677888999999999999999999999999999888788999999999999999876557999999999887766
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGI 568 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~ 568 (654)
...+...+++++..|+++++|+|++... .+++++.+..|.+++..+.....++|.|||+||+|+.....+.+.+
T Consensus 224 ~~~Lg~~~l~~i~radvlL~VVD~s~~~------~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l 297 (390)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPID------GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERA 297 (390)
T ss_pred hhhHHHHHHHHHHhCCEEEEEeccCccc------ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHH
Confidence 6667888889999999999999987321 2456777888888887665444578999999999997655443322
Q ss_pred HHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHH
Q psy1086 569 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAE 625 (654)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~ 625 (654)
. ++.+.. ....++|++||++++ ||++|++.|.+.+.+..+
T Consensus 298 ~----~l~~~~------------~~~~~Vi~ISA~tg~-GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 298 K----AIVEAL------------GWEGPVYLISAASGL-GVKELCWDLMTFIEENPR 337 (390)
T ss_pred H----HHHHHh------------CCCCCEEEEECCCCc-CHHHHHHHHHHHhhhCcc
Confidence 2 221111 001258999999999 999999999998876544
No 23
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.3e-22 Score=217.28 Aligned_cols=188 Identities=48% Similarity=0.809 Sum_probs=153.1
Q ss_pred cCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
+.+++...+.|+++....|+++|.+|||||||++++++....++++|++|..+..+.+.+++...+.+|||||+.+..+.
T Consensus 143 G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~ 222 (424)
T PRK12297 143 GEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE 222 (424)
T ss_pred CCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc
Confidence 44566678889999999999999999999999999999888888899999999999998874458999999999887777
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGI 568 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~ 568 (654)
...+...+++++..|+++++|+|+++. ..+++++.+..|.+++..+.....++|++||+||+|+....+..
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s~~------~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l--- 293 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGS------EGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENL--- 293 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCCcc------ccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHH---
Confidence 777888999999999999999999842 13577888888999988775545679999999999985432211
Q ss_pred HHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 569 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
.++.+.. . .++|++||++++ |+++|++.|.+.+....
T Consensus 294 ----~~l~~~l-------------~-~~i~~iSA~tge-GI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 294 ----EEFKEKL-------------G-PKVFPISALTGQ-GLDELLYAVAELLEETP 330 (424)
T ss_pred ----HHHHHHh-------------C-CcEEEEeCCCCC-CHHHHHHHHHHHHHhCc
Confidence 1111111 0 258999999999 99999999998886543
No 24
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.2e-22 Score=219.90 Aligned_cols=192 Identities=40% Similarity=0.698 Sum_probs=155.5
Q ss_pred ccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc
Q psy1086 408 LGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~ 487 (654)
.+.+++...+.|+++...+|+++|.+|+|||||+|+|++....++++|++|+.+..+.+.+.+. ++++|||||+.+..+
T Consensus 143 ~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~-~f~laDtPGliegas 221 (500)
T PRK12296 143 LGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT-RFTVADVPGLIPGAS 221 (500)
T ss_pred CCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe-EEEEEECCCCccccc
Confidence 3556777889999999999999999999999999999998888889999999999999998874 799999999988777
Q ss_pred cccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc---------ccCCCCEEEEEeCCCc
Q psy1086 488 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM---------NLLEKPIILLVNKMDV 558 (654)
Q Consensus 488 ~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~---------~~~~~p~iiv~NK~Dl 558 (654)
....+...+++++..|+++++|+|+++. +..+++++.+..|..++..+.. ...++|+|||+||+|+
T Consensus 222 ~g~gLg~~fLrhieradvLv~VVD~s~~-----e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL 296 (500)
T PRK12296 222 EGKGLGLDFLRHIERCAVLVHVVDCATL-----EPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV 296 (500)
T ss_pred hhhHHHHHHHHHHHhcCEEEEEECCccc-----ccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc
Confidence 6667888899999999999999999832 1134567777777777766543 2357999999999999
Q ss_pred cChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 559 EGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 559 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
++..++.+.+.+.+.. ...++|+|||++++ ||++|++.|.+.++...
T Consensus 297 ~da~el~e~l~~~l~~------------------~g~~Vf~ISA~tge-GLdEL~~~L~ell~~~r 343 (500)
T PRK12296 297 PDARELAEFVRPELEA------------------RGWPVFEVSAASRE-GLRELSFALAELVEEAR 343 (500)
T ss_pred hhhHHHHHHHHHHHHH------------------cCCeEEEEECCCCC-CHHHHHHHHHHHHHhhh
Confidence 8665544433322221 12368999999999 99999999999887643
No 25
>KOG0087|consensus
Probab=99.90 E-value=1.7e-23 Score=195.31 Aligned_cols=160 Identities=19% Similarity=0.120 Sum_probs=139.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
-||+++|++++|||-|+.++..+.+...+.+++++++.+..+.+++.. +.+||||+|+++++.. +..|||+|
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAi-------tSaYYrgA 87 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAI-------TSAYYRGA 87 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccc-------cchhhccc
Confidence 479999999999999999999999999999999999999999998743 6799999997776543 44899999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
.++++|||++ .+.+|+.+..|..||..+. ..++++++|+||+||.+.+.+..+..+.+++..
T Consensus 88 vGAllVYDIT---------r~~Tfenv~rWL~ELRdha--d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~------- 149 (222)
T KOG0087|consen 88 VGALLVYDIT---------RRQTFENVERWLKELRDHA--DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE------- 149 (222)
T ss_pred ceeEEEEech---------hHHHHHHHHHHHHHHHhcC--CCCeEEEEeecchhhhhccccchhhhHhHHHhc-------
Confidence 9999999999 7899999999999998763 358999999999999988888888888887632
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...++++||..+. ||+++|+.+...+
T Consensus 150 ----------~l~f~EtSAl~~t-NVe~aF~~~l~~I 175 (222)
T KOG0087|consen 150 ----------GLFFLETSALDAT-NVEKAFERVLTEI 175 (222)
T ss_pred ----------CceEEEecccccc-cHHHHHHHHHHHH
Confidence 2358999999999 9999999887644
No 26
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.90 E-value=1.3e-22 Score=198.36 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=127.1
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
+|+++|..|||||||++++....+.....++++.++....+.+++. ..+++|||||+.+ +...+..|++.||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~-------~~~l~~~y~~~ad 74 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSAK 74 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh-------hHHHHHHHhcCCC
Confidence 6899999999999999999988775555666677777777888763 3689999999543 5556678999999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++++|+.+..|..++.... ..+.|+|||+||+|+...+++..+..+.++.-
T Consensus 75 ~iIlVfDvt---------d~~Sf~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~--------- 134 (202)
T cd04120 75 GIILVYDIT---------KKETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREISRQQGEKFAQQ--------- 134 (202)
T ss_pred EEEEEEECc---------CHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHh---------
Confidence 999999999 8899999999988775442 34689999999999976666554444434320
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.....+|+|||++|. ||+++|+.+++.+.
T Consensus 135 -------~~~~~~~etSAktg~-gV~e~F~~l~~~~~ 163 (202)
T cd04120 135 -------ITGMRFCEASAKDNF-NVDEIFLKLVDDIL 163 (202)
T ss_pred -------cCCCEEEEecCCCCC-CHHHHHHHHHHHHH
Confidence 112358999999999 99999999988764
No 27
>KOG0080|consensus
Probab=99.89 E-value=4e-23 Score=183.09 Aligned_cols=162 Identities=20% Similarity=0.136 Sum_probs=134.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||.+||.+|+|||||+.+|....+......+++.++....+.+++.+ ++.||||||+++++. .+..|||+|
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt-------LTpSyyRga 84 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT-------LTPSYYRGA 84 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc-------cCHhHhccC
Confidence 489999999999999999999987765556668899999999998755 899999999666544 445999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
.++|+|||++ .|++|..+..|.+|+..+.. ..++..++|+||+|....+.+..+..-.++.-
T Consensus 85 qGiIlVYDVT---------~Rdtf~kLd~W~~Eld~Yst-n~diikmlVgNKiDkes~R~V~reEG~kfAr~-------- 146 (209)
T KOG0080|consen 85 QGIILVYDVT---------SRDTFVKLDIWLKELDLYST-NPDIIKMLVGNKIDKESERVVDREEGLKFARK-------- 146 (209)
T ss_pred ceeEEEEEcc---------chhhHHhHHHHHHHHHhhcC-CccHhHhhhcccccchhcccccHHHHHHHHHh--------
Confidence 9999999999 89999999999999988753 35677899999999877777776666555542
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+.+-++++||||.+ ||+..|+.+++.+-
T Consensus 147 ---------h~~LFiE~SAkt~~-~V~~~FeelveKIi 174 (209)
T KOG0080|consen 147 ---------HRCLFIECSAKTRE-NVQCCFEELVEKII 174 (209)
T ss_pred ---------hCcEEEEcchhhhc-cHHHHHHHHHHHHh
Confidence 22348999999999 99999999987664
No 28
>KOG1489|consensus
Probab=99.89 E-value=1.6e-22 Score=199.54 Aligned_cols=185 Identities=45% Similarity=0.825 Sum_probs=159.2
Q ss_pred cCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
+..++...+.|+++....++++|.+|+|||||+++++.....+.++++||..|..+.+.+++...+.+.|.||+++.++.
T Consensus 181 G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~ 260 (366)
T KOG1489|consen 181 GLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM 260 (366)
T ss_pred CCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccc
Confidence 44556678889999999999999999999999999999999999999999999999999999878999999999999999
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGI 568 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~ 568 (654)
+.+++..|++++..|+.+++|+|++.+ +.+.+++.+..+..|+..+.....++|.+||+||+|+++..+
T Consensus 261 nkGlG~~FLrHiER~~~l~fVvD~s~~------~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~----- 329 (366)
T KOG1489|consen 261 NKGLGYKFLRHIERCKGLLFVVDLSGK------QLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK----- 329 (366)
T ss_pred cCcccHHHHHHHHhhceEEEEEECCCc------ccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-----
Confidence 999999999999999999999999954 357889999999999998877778899999999999964422
Q ss_pred HHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 569 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+.+.++.+.++. ..+|++||++++ |+.+|+.-+.+.
T Consensus 330 -~~l~~L~~~lq~-------------~~V~pvsA~~~e-gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 330 -NLLSSLAKRLQN-------------PHVVPVSAKSGE-GLEELLNGLREL 365 (366)
T ss_pred -HHHHHHHHHcCC-------------CcEEEeeecccc-chHHHHHHHhhc
Confidence 112333333321 248999999999 999999887654
No 29
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.89 E-value=2.6e-22 Score=200.83 Aligned_cols=193 Identities=42% Similarity=0.696 Sum_probs=164.2
Q ss_pred cCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
+.+++...+.|+++-...|+++|.||+|||||++.++..+..+.+||+||+.|..+.+.+.+...+.+.|.||+++.++.
T Consensus 144 G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~ 223 (369)
T COG0536 144 GEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASE 223 (369)
T ss_pred CCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCccccccccc
Confidence 44667778999999999999999999999999999999999999999999999999999876667999999999999999
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGI 568 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~ 568 (654)
..+++..|++++..|.+++||+|++... .+.+.+.++.+..||..|.....++|.+||+||+|++.+.+..+..
T Consensus 224 G~GLG~~FLrHIERt~vL~hviD~s~~~------~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~ 297 (369)
T COG0536 224 GVGLGLRFLRHIERTRVLLHVIDLSPID------GRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEEL 297 (369)
T ss_pred CCCccHHHHHHHHhhheeEEEEecCccc------CCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHH
Confidence 9999999999999999999999998532 4678999999999999998888899999999999977665544444
Q ss_pred HHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 569 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
.+.+.+. . .+ ...++|||.+++ |+++|...+.+++.+..
T Consensus 298 ~~~l~~~---~------------~~-~~~~~ISa~t~~-g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 298 KKALAEA---L------------GW-EVFYLISALTRE-GLDELLRALAELLEETK 336 (369)
T ss_pred HHHHHHh---c------------CC-Ccceeeehhccc-CHHHHHHHHHHHHHHhh
Confidence 4333321 1 01 112239999999 99999999999998764
No 30
>KOG0086|consensus
Probab=99.89 E-value=1.6e-22 Score=177.56 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=136.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.|+.++|+.|.|||+|+.+|...++...+..++++++....+.+.+.. +++||||+|+ +.|+.-+..|||+|
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ-------ErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ-------ERFRSVTRSYYRGA 82 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH-------HHHHHHHHHHhccc
Confidence 478999999999999999999999888888888999999999988744 8999999995 45667777999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
-++++|||++ ++++|+.+..|..+.... ...++-+|+++||.||.+++++.-.....++..++
T Consensus 83 AGAlLVYD~T---------srdsfnaLtnWL~DaR~l--As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne------ 145 (214)
T KOG0086|consen 83 AGALLVYDIT---------SRDSFNALTNWLTDARTL--ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE------ 145 (214)
T ss_pred cceEEEEecc---------chhhHHHHHHHHHHHHhh--CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccc------
Confidence 9999999999 899999999999987644 34578889999999999988877665555544222
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..++++||+||+ ||+|.|-.+++.+-
T Consensus 146 -----------l~flETSa~TGe-NVEEaFl~c~~tIl 171 (214)
T KOG0086|consen 146 -----------LMFLETSALTGE-NVEEAFLKCARTIL 171 (214)
T ss_pred -----------eeeeeecccccc-cHHHHHHHHHHHHH
Confidence 247999999999 99999999988764
No 31
>KOG0091|consensus
Probab=99.89 E-value=1.2e-22 Score=180.62 Aligned_cols=163 Identities=16% Similarity=0.129 Sum_probs=140.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc--eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR--KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~--~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
|+.+||++-+|||||++.+....+..-+.|++++++....+++..+. ++++|||+|+ +.++..+..|||++
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-------erfrsitksyyrns 82 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-------ERFRSITKSYYRNS 82 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-------HHHHHHHHHHhhcc
Confidence 78899999999999999999999988889999999999888876554 7899999995 45667777999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
-++++|||++ ++++||.+..|.+|...+.......-+.+|+.|+||...+++..+..+.+++
T Consensus 83 vgvllvydit---------nr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa--------- 144 (213)
T KOG0091|consen 83 VGVLLVYDIT---------NRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA--------- 144 (213)
T ss_pred cceEEEEecc---------chhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH---------
Confidence 9999999999 8999999999999987665434456678999999999889998888887776
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.++..++++||++|. ||+|.|+++++.+..
T Consensus 145 --------~hgM~FVETSak~g~-NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 145 --------SHGMAFVETSAKNGC-NVEEAFDMLAQEIFQ 174 (213)
T ss_pred --------hcCceEEEecccCCC-cHHHHHHHHHHHHHH
Confidence 233457999999999 999999999987754
No 32
>KOG0093|consensus
Probab=99.89 E-value=1.7e-22 Score=176.46 Aligned_cols=166 Identities=18% Similarity=0.158 Sum_probs=137.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.|+.++|+..+||||++.++++..+......+.++++..+.+.-.+.+ ++++|||+|+++ ++..+-.|||+|
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-------yrtiTTayyRga 94 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-------YRTITTAYYRGA 94 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchh-------hhHHHHHHhhcc
Confidence 389999999999999999999998877778888889988887766544 799999999654 566677999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++|+.||++ +.++|.+++.|...+..+ .+.+.|+|||+||||+.+.+.+..+-...+++ .
T Consensus 95 mgfiLmyDit---------NeeSf~svqdw~tqIkty--sw~naqvilvgnKCDmd~eRvis~e~g~~l~~---~----- 155 (193)
T KOG0093|consen 95 MGFILMYDIT---------NEESFNSVQDWITQIKTY--SWDNAQVILVGNKCDMDSERVISHERGRQLAD---Q----- 155 (193)
T ss_pred ceEEEEEecC---------CHHHHHHHHHHHHHheee--eccCceEEEEecccCCccceeeeHHHHHHHHH---H-----
Confidence 9999999999 889999999998887655 56789999999999999887776555544443 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEE 626 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~ 626 (654)
-+..+|++|||.+- ||+++|+.+...+.+...+
T Consensus 156 ---------LGfefFEtSaK~Ni-nVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 156 ---------LGFEFFETSAKENI-NVKQVFERLVDIICDKMSE 188 (193)
T ss_pred ---------hChHHhhhcccccc-cHHHHHHHHHHHHHHHhhh
Confidence 12257999999999 9999999999888765444
No 33
>KOG0095|consensus
Probab=99.89 E-value=2.5e-22 Score=175.65 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=135.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|+.|+|||+|++++...-+......++++++..+.+.+++.+ +++||||+|+ +.|+..+-.|||.|
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagq-------erfrsitqsyyrsa 80 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ-------ERFRSITQSYYRSA 80 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch-------HHHHHHHHHHhhhc
Confidence 489999999999999999999987777777888899999999998754 7999999995 44666777999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ...+|.-+.+|..+++.+.. ..+--|+|+||+|+.+.+++.+++.+.+.+.++-
T Consensus 81 halilvydis---------cqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdm----- 144 (213)
T KOG0095|consen 81 HALILVYDIS---------CQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDM----- 144 (213)
T ss_pred ceEEEEEecc---------cCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhh-----
Confidence 9999999999 66789999999999988743 3456699999999999899999998888764321
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
-++++|||... ||+.||..++-.
T Consensus 145 ------------yfletsakea~-nve~lf~~~a~r 167 (213)
T KOG0095|consen 145 ------------YFLETSAKEAD-NVEKLFLDLACR 167 (213)
T ss_pred ------------hhhhhcccchh-hHHHHHHHHHHH
Confidence 27999999998 999999998643
No 34
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.88 E-value=6.3e-22 Score=191.70 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=124.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|..+||||||+.++....+.....++.+.++....+.+++. ..+.+|||||+.+ +...+..+++.|
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~l~~~~~~~a 79 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR-------FCTIFRSYSRGA 79 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhcCC
Confidence 68999999999999999999987654444455566666666777653 2688999999543 455566889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+|+.+..|..++.... .+.|+|||+||+|+.+.+.+..+..+.++.
T Consensus 80 d~illVfD~t---------~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~--------- 138 (189)
T cd04121 80 QGIILVYDIT---------NRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAE--------- 138 (189)
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHH---------
Confidence 9999999999 8899999999999886542 468999999999997655554443333332
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....++|++||++|. ||+++|+.+++.+-
T Consensus 139 --------~~~~~~~e~SAk~g~-~V~~~F~~l~~~i~ 167 (189)
T cd04121 139 --------RNGMTFFEVSPLCNF-NITESFTELARIVL 167 (189)
T ss_pred --------HcCCEEEEecCCCCC-CHHHHHHHHHHHHH
Confidence 122468999999999 99999999997653
No 35
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=1.1e-21 Score=186.90 Aligned_cols=167 Identities=47% Similarity=0.811 Sum_probs=127.2
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
+|+++|.+|+|||||+++|.+....+...+++|.++..+.+.+++...+.+|||||+.+.......+...+.+.++.||+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 58999999999999999999876655667788888888888777643799999999865443333456667777888999
Q ss_pred EEEEEeCCCcccCCCCCcc-chHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKR-SCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~-~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
+++|+|++ +. .+++.+..|.+++........++|+++|+||+|+.+...+.+.+.+....
T Consensus 82 vi~v~D~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---------- 142 (170)
T cd01898 82 LLHVIDLS---------GDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---------- 142 (170)
T ss_pred EEEEEecC---------CCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh----------
Confidence 99999998 45 67888888888776543333478999999999997655444333322211
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
....+++++||+++. |++++|+.+.+.
T Consensus 143 -------~~~~~~~~~Sa~~~~-gi~~l~~~i~~~ 169 (170)
T cd01898 143 -------LWGKPVFPISALTGE-GLDELLRKLAEL 169 (170)
T ss_pred -------CCCCCEEEEecCCCC-CHHHHHHHHHhh
Confidence 012468999999999 999999998865
No 36
>KOG0079|consensus
Probab=99.88 E-value=4.1e-22 Score=174.21 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=137.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+..++|++|+|||+|+.+|....+..++..+++.++....+.+++.+ +++||||+| ++.|+.++..|+++.
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG-------qErFrtitstyyrgt 81 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAG-------QERFRTITSTYYRGT 81 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeeccc-------HHHHHHHHHHHccCC
Confidence 356789999999999999999987777777888899999999998765 899999999 566888888999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +.+||..+..|.+++... -...|-|+|+||.|+++.+.+..+.+..++-
T Consensus 82 hgv~vVYDVT---------n~ESF~Nv~rWLeei~~n---cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~--------- 140 (198)
T KOG0079|consen 82 HGVIVVYDVT---------NGESFNNVKRWLEEIRNN---CDSVPKVLVGNKNDDPERRVVDTEDARAFAL--------- 140 (198)
T ss_pred ceEEEEEECc---------chhhhHhHHHHHHHHHhc---CccccceecccCCCCccceeeehHHHHHHHH---------
Confidence 9999999999 889999999999888643 2368999999999998877666655555543
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
..++..|++|||.+. |++..|.-|.+++-+..
T Consensus 141 --------~mgie~FETSaKe~~-NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 141 --------QMGIELFETSAKENE-NVEAMFHCITKQVLQAK 172 (198)
T ss_pred --------hcCchheehhhhhcc-cchHHHHHHHHHHHHHH
Confidence 234568999999999 99999999998875543
No 37
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.87 E-value=2.8e-21 Score=188.88 Aligned_cols=171 Identities=14% Similarity=0.117 Sum_probs=123.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccc-cchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRN-LGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~-~~~~~~~~~~~~~a 503 (654)
||+++|.+|||||||++++.+..+.....|+++.+.....+.+++. ..+.+|||||+.++.... .........+++.|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 7899999999999999999998776666666665655556666653 257899999986543211 11122244668899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc-ccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~-~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
|++++|||++ ++.+++.+..|.+++..... ...+.|+|||+||+|+...+.+..+..+.++. .
T Consensus 82 d~iilv~D~~---------~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~---- 145 (198)
T cd04142 82 RAFILVYDIC---------SPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---K---- 145 (198)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH---H----
Confidence 9999999998 77889988888877754431 23568999999999997654333332222211 0
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..++++|++||++|. ||++||+.+++.+-.
T Consensus 146 ---------~~~~~~~e~Sak~g~-~v~~lf~~i~~~~~~ 175 (198)
T cd04142 146 ---------SWKCGYLECSAKYNW-HILLLFKELLISATT 175 (198)
T ss_pred ---------hcCCcEEEecCCCCC-CHHHHHHHHHHHhhc
Confidence 123578999999999 999999999986653
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.87 E-value=2.6e-21 Score=191.99 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=125.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC--ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~--~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
||+++|.+|||||||+++|.+..+.....|+++.++....+.+++. ..+.+|||||+.. +...+..+++.|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-------~~~l~~~~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-------GGKMLDKYIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-------HHHHHHHHhhcC
Confidence 7899999999999999999998776666777777887777777642 3789999999533 344455789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcc-cCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~-~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
|++++|||++ ++++++.+..|..++...... ..+.|+++|+||+|+.+.+.+..+..+.++..
T Consensus 75 d~iilV~D~t---------~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~------- 138 (215)
T cd04109 75 HAVFLVYDVT---------NSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA------- 138 (215)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH-------
Confidence 9999999998 778999999998888655322 23568999999999976554433333333221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
...+++++||++|+ ||+++|+.+++.+..
T Consensus 139 ----------~~~~~~~iSAktg~-gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 ----------NGMESCLVSAKTGD-RVNLLFQQLAAELLG 167 (215)
T ss_pred ----------cCCEEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence 12358999999999 999999999987754
No 39
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.87 E-value=2.4e-21 Score=185.56 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|..++|||||+.++....+.....|++.. .....+.+++. .++.+|||+|+.++.... ..+++.|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~-------~~~~~~a 73 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVSVDGNTVNLGLWDTAGQEDYNRLR-------PLSYRGA 73 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCccee-eeEEEEEECCEEEEEEEEECCCCccccccc-------hhhcCCC
Confidence 47999999999999999999997765445554433 33445556542 278999999977655443 3689999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccChHH----------HHHHHHHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQE----------IYDGIRDTL 572 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~----------v~~~~~~~~ 572 (654)
+++++|||++ ++++|+.+ ..|..++.... .+.|+|||+||+|+.+.+. +..+..+.+
T Consensus 74 ~~~ilvyd~~---------~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 74 DVFVLAFSLI---------SRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEEL 141 (176)
T ss_pred cEEEEEEEcC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHH
Confidence 9999999999 78899998 67888875442 3689999999999965431 333333333
Q ss_pred HhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 573 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+. . .+..++++|||++|. ||+++|+.+++.+
T Consensus 142 a~------~----------~~~~~~~E~SAk~~~-nV~~~F~~~~~~~ 172 (176)
T cd04133 142 RK------Q----------IGAAAYIECSSKTQQ-NVKAVFDAAIKVV 172 (176)
T ss_pred HH------H----------cCCCEEEECCCCccc-CHHHHHHHHHHHH
Confidence 32 0 111258999999999 9999999999865
No 40
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.87 E-value=3.8e-21 Score=182.67 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|++|+|||||++++....+.....++++.++....+.+++. .++.+|||||+. .+...+..+++.+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-------~~~~~~~~~~~~~ 75 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE-------RFRAVTRSYYRGA 75 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHhcCC
Confidence 48999999999999999999987654433444444554555566543 268999999953 3455566789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++... ...+.|++||+||+|+...+.+..+....++.
T Consensus 76 ~~~ilv~d~~---------~~~s~~~~~~~~~~~~~~--~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~--------- 135 (166)
T cd04122 76 AGALMVYDIT---------RRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD--------- 135 (166)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccCcCHHHHHHHHH---------
Confidence 9999999998 778899998888776543 22468999999999997665443332222222
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|+ ||+++|+.+++.+
T Consensus 136 --------~~~~~~~e~Sa~~~~-~i~e~f~~l~~~~ 163 (166)
T cd04122 136 --------ENGLLFLECSAKTGE-NVEDAFLETAKKI 163 (166)
T ss_pred --------HcCCEEEEEECCCCC-CHHHHHHHHHHHH
Confidence 112368999999999 9999999998655
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=3e-21 Score=189.46 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=122.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC-CC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD-DF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~-~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
||+++|.+|+|||||++++++..+.....++++.++....+.++ +. ..+.+|||||..+ +...+..+++.|
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~a 74 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-------FGGMTRVYYRGA 74 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-------hhhhHHHHhCCC
Confidence 79999999999999999999977655566666666666667776 32 2689999999643 444556889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
|++++|||++ ++.+++.+..|..++..... ...+.|+|||+||+|+.+.+.+..+..+.+...
T Consensus 75 ~~~ilv~D~t---------~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------ 139 (201)
T cd04107 75 VGAIIVFDVT---------RPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE------ 139 (201)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH------
Confidence 9999999998 78899999999887764321 235689999999999974333222222222221
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+..++|++||++|. ||+++|+.+.+.+-.
T Consensus 140 ----------~~~~~~~e~Sak~~~-~v~e~f~~l~~~l~~ 169 (201)
T cd04107 140 ----------NGFIGWFETSAKEGI-NIEEAMRFLVKNILA 169 (201)
T ss_pred ----------cCCceEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 122468999999999 999999999987743
No 42
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.86 E-value=6.8e-21 Score=180.13 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=120.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
+|+++|++|+|||||+++++...+.....++++.+.....+.+++. ..+.+|||||..+ +......+++.+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~~~~ 74 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER-------YQTITKQYYRRAQ 74 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh-------HHhhHHHHhcCCc
Confidence 6899999999999999999987765555566665666566666652 2678999999544 3344557889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++.+++.+..|..++.... ..+.|+++|+||+|+.+.+.+..+....+++.
T Consensus 75 ~~i~v~d~~---------~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~--------- 134 (161)
T cd04117 75 GIFLVYDIS---------SERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQKRQVGDEQGNKLAKE--------- 134 (161)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCCCHHHHHHHHHH---------
Confidence 999999998 7889999999988776442 24689999999999976655544444444321
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
...+++++||++|. ||+++|+.|.++
T Consensus 135 --------~~~~~~e~Sa~~~~-~v~~~f~~l~~~ 160 (161)
T cd04117 135 --------YGMDFFETSACTNS-NIKESFTRLTEL 160 (161)
T ss_pred --------cCCEEEEEeCCCCC-CHHHHHHHHHhh
Confidence 12468999999999 999999999865
No 43
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.86 E-value=8.5e-21 Score=180.13 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=118.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|+|||||++++.+..+.....++++.+.....+..++. ..+.+|||||..+ +...+..+++.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-------~~~~~~~~~~~~ 74 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-------YRTITTAYYRGA 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHccCC
Confidence 48999999999999999999998765555565555555555555542 3689999999543 444556889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ..+.|+++|+||+|+.+.+.+..+....+.. .
T Consensus 75 ~~~l~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---~----- 135 (165)
T cd01865 75 MGFILMYDIT---------NEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDERVVSSERGRQLAD---Q----- 135 (165)
T ss_pred cEEEEEEECC---------CHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCcccccCHHHHHHHHH---H-----
Confidence 9999999998 6788999999988875432 2368999999999997654432222222221 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...++|++||++|. ||++||+.+.+.+
T Consensus 136 ---------~~~~~~~~Sa~~~~-gv~~l~~~l~~~~ 162 (165)
T cd01865 136 ---------LGFEFFEASAKENI-NVKQVFERLVDII 162 (165)
T ss_pred ---------cCCEEEEEECCCCC-CHHHHHHHHHHHH
Confidence 12368999999999 9999999998764
No 44
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.86 E-value=1.1e-20 Score=179.52 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|||||||++++.+..+.....++++.+.....+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-------FRTITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHhCcC
Confidence 48999999999999999999988776656666666666667776653 2689999999543 444555788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++++++.+..|..++.... ..+.|+++|+||+|+...+.+..+....+..
T Consensus 76 ~~ii~v~d~~---------~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~--------- 135 (166)
T cd01869 76 HGIIIVYDVT---------DQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD--------- 135 (166)
T ss_pred CEEEEEEECc---------CHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHH---------
Confidence 9999999998 6788999988888876542 2468999999999987654433222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.+++.+.
T Consensus 136 --------~~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~ 164 (166)
T cd01869 136 --------ELGIPFLETSAKNAT-NVEQAFMTMAREIK 164 (166)
T ss_pred --------HcCCeEEEEECCCCc-CHHHHHHHHHHHHH
Confidence 112468999999999 99999999988664
No 45
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.86 E-value=9.8e-21 Score=178.88 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=117.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|||||||+++++...+... +++++.+.....+.+++. ..+.+|||||+.++ ...+..+++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF-------TAMRDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------chHHHHHhhcC
Confidence 4899999999999999999998765433 333444555566666653 25778999996543 33445788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+.+.+.+..+....+.+ .
T Consensus 74 ~~~ilv~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~----- 135 (163)
T cd04136 74 QGFVLVYSIT---------SQSSFNDLQDLREQILRVK-DTENVPMVLVGNKCDLEDERVVSREEGQALAR---Q----- 135 (163)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceecHHHHHHHHH---H-----
Confidence 9999999998 6778888888888776543 22468999999999997654433322222221 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...+++++||++|. ||+++|+.+.+.+
T Consensus 136 ---------~~~~~~~~Sa~~~~-~v~~l~~~l~~~~ 162 (163)
T cd04136 136 ---------WGCPFYETSAKSKI-NVDEVFADLVRQI 162 (163)
T ss_pred ---------cCCeEEEecCCCCC-CHHHHHHHHHHhc
Confidence 11478999999999 9999999998653
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.86 E-value=1.1e-20 Score=179.63 Aligned_cols=161 Identities=19% Similarity=0.154 Sum_probs=122.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|++|+|||||++++.+..+.....++++.+.....+.+++. ..+.+|||||+.+ +......+++.|
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER-------FRTITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHhCCC
Confidence 58999999999999999999998776655666666666666766653 2689999999543 334455788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|...+.... ..+.|++||+||+|+.+.+++..+....+..
T Consensus 77 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--------- 136 (167)
T cd01867 77 MGIILVYDIT---------DEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEKRVVSKEEGEALAD--------- 136 (167)
T ss_pred CEEEEEEECc---------CHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHH---------
Confidence 9999999998 6788999988888776542 3468999999999998654433222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.+.+.+.
T Consensus 137 --------~~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~ 165 (167)
T cd01867 137 --------EYGIKFLETSAKANI-NVEEAFFTLAKDIK 165 (167)
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 112368999999999 99999999987663
No 47
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=1e-20 Score=184.09 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=118.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
+|+++|.+|||||||+++|+...+... +++++.+.....+.+++. ..+.+|||||..+ +......+++.||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET-YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-------YTALRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-CCCchHhhEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHHHhCC
Confidence 589999999999999999998765433 333443444445556553 2588999999644 3344557899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcc-cCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~-~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
++++|||++ ++.+++.+..|...+...... ..+.|+|||+||+|+.+.+.+.......++. .
T Consensus 73 ~~ilv~d~~---------~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~---~----- 135 (190)
T cd04144 73 GFILVYSIT---------SRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR---R----- 135 (190)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH---H-----
Confidence 999999998 778899998888877654321 2468999999999997654443332222221 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
...++|++||++|. ||+++|+.+.+.+...
T Consensus 136 ---------~~~~~~e~SAk~~~-~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 136 ---------LGCEFIEASAKTNV-NVERAFYTLVRALRQQ 165 (190)
T ss_pred ---------hCCEEEEecCCCCC-CHHHHHHHHHHHHHHh
Confidence 12368999999999 9999999999877543
No 48
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.86 E-value=1.3e-20 Score=180.26 Aligned_cols=161 Identities=15% Similarity=0.098 Sum_probs=119.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|..|||||||++++....+.....|++. ......+.+++. ..+.+|||||..+ +...+..+++.+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~l~~~~~~~~ 74 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKQQARIDNEPALLDILDTAGQAE-------FTAMRDQYMRCG 74 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc-ceEEEEEEECCEEEEEEEEeCCCchh-------hHHHhHHHhhcC
Confidence 4899999999999999999998766444444433 333345566552 2688999999654 444556789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|...+.... ...+.|+|+|+||+|+.+.+.+..+....+++
T Consensus 75 d~~ilv~d~~---------~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~--------- 135 (172)
T cd04141 75 EGFIICYSVT---------DRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR--------- 135 (172)
T ss_pred CEEEEEEECC---------chhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhhcCccCHHHHHHHHH---------
Confidence 9999999998 7889999988877775432 22468999999999987655554433333332
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...++++++||++|. ||+++|+.+.+.+.
T Consensus 136 --------~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~ 164 (172)
T cd04141 136 --------EFNCPFFETSAALRH-YIDDAFHGLVREIR 164 (172)
T ss_pred --------HhCCEEEEEecCCCC-CHHHHHHHHHHHHH
Confidence 112468999999999 99999999987654
No 49
>KOG0088|consensus
Probab=99.86 E-value=1.7e-21 Score=172.16 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=129.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
|++++|.-.+|||||+-+++...+.-....+.-..+..+.+.+.+.+ .+.||||+|++++....+ .|||+++
T Consensus 15 K~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP-------IYYRgSn 87 (218)
T KOG0088|consen 15 KIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP-------IYYRGSN 87 (218)
T ss_pred EEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc-------eEEeCCC
Confidence 78999999999999999999987744333333345666677776643 689999999988876666 7899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ |+++|+.++.|-.++.... ...+-++||+||+||...+++..+..+.+++-
T Consensus 88 GalLVyDIT---------DrdSFqKVKnWV~Elr~ml--Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAes--------- 147 (218)
T KOG0088|consen 88 GALLVYDIT---------DRDSFQKVKNWVLELRTML--GNEIELLIVGNKIDLEEERQVTRQEAEAYAES--------- 147 (218)
T ss_pred ceEEEEecc---------chHHHHHHHHHHHHHHHHh--CCeeEEEEecCcccHHHhhhhhHHHHHHHHHh---------
Confidence 999999999 8999999999999987653 23578999999999999988887777777662
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
-++.++++||+.+. ||.|||+.+...+
T Consensus 148 --------vGA~y~eTSAk~N~-Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 148 --------VGALYMETSAKDNV-GISELFESLTAKM 174 (218)
T ss_pred --------hchhheeccccccc-CHHHHHHHHHHHH
Confidence 23348999999999 9999999987654
No 50
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.85 E-value=1.4e-20 Score=181.10 Aligned_cols=161 Identities=15% Similarity=0.133 Sum_probs=120.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC-----------CceEEEEecCCCCCCCccccchh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-----------FRKMSVADLPGLIEGAHRNLGMG 493 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~-----------~~~~~i~DTpG~~~~~~~~~~~~ 493 (654)
.||+++|.+|||||||++++.+..+.....++++.++....+.+.. ...+.+|||||+. .+.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~ 77 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------RFR 77 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------HHH
Confidence 5899999999999999999998876555566666666555555532 1368999999953 344
Q ss_pred HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHH
Q psy1086 494 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 573 (654)
Q Consensus 494 ~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~ 573 (654)
..+..+++.+|++++|||++ ++++++.+..|..++..... ..+.|++||+||+|+.+.+.+..+..+.++
T Consensus 78 ~~~~~~~~~~~~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~ 147 (180)
T cd04127 78 SLTTAFFRDAMGFLLIFDLT---------NEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALA 147 (180)
T ss_pred HHHHHHhCCCCEEEEEEECC---------CHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHH
Confidence 55667899999999999998 78899999999888764321 246899999999999765444332222232
Q ss_pred hhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 574 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
. . ...+++++||++|. ||+++|+.+.+.+
T Consensus 148 ~---~--------------~~~~~~e~Sak~~~-~v~~l~~~l~~~~ 176 (180)
T cd04127 148 D---K--------------YGIPYFETSAATGT-NVEKAVERLLDLV 176 (180)
T ss_pred H---H--------------cCCeEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 2 1 12368999999999 9999999998754
No 51
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=8.3e-21 Score=182.41 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=114.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|+++||||||++++.+..+.....|++... ....+.+++. ..+.+|||||+.++... ...+++.||
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~iwDt~G~~~~~~~-------~~~~~~~a~ 74 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFEN-YTASFEIDEQRIELSLWDTSGSPYYDNV-------RPLCYPDSD 74 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEE-EEEEEEECCEEEEEEEEECCCchhhhhc-------chhhcCCCC
Confidence 79999999999999999999986654444544333 3345666653 26889999997654332 336789999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccCh------------HHHHHHHHHH
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGA------------QEIYDGIRDT 571 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~------------~~v~~~~~~~ 571 (654)
++++|||++ ++.+|+.+ ..|..++.... .+.|+|||+||+||.+. +.+..+..+.
T Consensus 75 ~~ilvfdit---------~~~Sf~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 75 AVLICFDIS---------RPETLDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred EEEEEEECC---------ChhhHHHHHHHHHHHHHHHC---CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHH
Confidence 999999999 78899985 78988876543 36899999999998642 1132233333
Q ss_pred HHhhHhhhccCCCCCCccccccccceEEEeeecCCCC-hHHHHHHHHHH
Q psy1086 572 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD-VNDAKLKIRSI 619 (654)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~g-v~el~~~i~~~ 619 (654)
++.- ....++|++||++|+ | |+++|..+.+.
T Consensus 143 ~a~~----------------~~~~~~~E~SA~~~~-~~v~~~F~~~~~~ 174 (178)
T cd04131 143 IAKQ----------------LGAEIYLECSAFTSE-KSVRDIFHVATMA 174 (178)
T ss_pred HHHH----------------hCCCEEEECccCcCC-cCHHHHHHHHHHH
Confidence 3321 111268999999998 7 99999999873
No 52
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.85 E-value=1.2e-20 Score=181.80 Aligned_cols=158 Identities=14% Similarity=0.114 Sum_probs=116.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|..+||||||+++++...+.....|++.. .....+.+++. ..+.+|||+|+.++ ......+++.|
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~-~~~~~~~~~~~~~~l~iwDtaG~e~~-------~~~~~~~~~~a 77 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYY-------DNVRPLSYPDS 77 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceee-eeEEEEEECCEEEEEEEEECCCchhh-------HhhhhhhcCCC
Confidence 48999999999999999999997765444454433 33445666653 26899999996543 33445789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccCh------------HHHHHHHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGA------------QEIYDGIRD 570 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~------------~~v~~~~~~ 570 (654)
|++++|||++ ++.+|+.+ ..|..++.... .+.|+|||+||+||.+. +.+..+..+
T Consensus 78 d~~ilvyDit---------~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 145 (182)
T cd04172 78 DAVLICFDIS---------RPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA 145 (182)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHH
Confidence 9999999998 78999997 78988876543 36899999999998642 123333333
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeeecCCCC-hHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD-VNDAKLKIRSI 619 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~g-v~el~~~i~~~ 619 (654)
.++.- .+..+|++|||++|. | |+++|+.+.+.
T Consensus 146 ~~a~~----------------~~~~~~~E~SAk~~~-n~v~~~F~~~~~~ 178 (182)
T cd04172 146 NMAKQ----------------IGAATYIECSALQSE-NSVRDIFHVATLA 178 (182)
T ss_pred HHHHH----------------cCCCEEEECCcCCCC-CCHHHHHHHHHHH
Confidence 33321 111368999999999 8 99999988773
No 53
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.85 E-value=2.4e-20 Score=176.87 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=119.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|+++||||||++++++..+.....++++.++....+.+++. ..+.+|||||..+ +......+++.||
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-------YLEVRNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-------HHHHHHHHhccCC
Confidence 7999999999999999999998776655666666666666666542 2788999999633 3445557789999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcc---cCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN---LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~---~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
++++|+|++ ++.+++.+..|..++...... ..+.|+++|+||+|+.+.+.+..+....+..
T Consensus 75 ~~ilv~D~~---------~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------- 138 (168)
T cd04119 75 GVLLVYDVT---------DRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE------- 138 (168)
T ss_pred EEEEEEECC---------CHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-------
Confidence 999999998 678888888888887654321 2468999999999987433222222211211
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....++|++||++|. ||+++|+.+.+.+
T Consensus 139 ----------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~l 166 (168)
T cd04119 139 ----------SKGFKYFETSACTGE-GVNEMFQTLFSSI 166 (168)
T ss_pred ----------HcCCeEEEEECCCCC-CHHHHHHHHHHHH
Confidence 012468999999999 9999999998754
No 54
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.85 E-value=3.2e-20 Score=177.20 Aligned_cols=163 Identities=10% Similarity=0.052 Sum_probs=120.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|..+||||||+++++++.+.....|+++.++....+.+++. ..+.+|||||+.+ +......+++.||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad 74 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER-------FKCIASTYYRGAQ 74 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHhhHHHHhcCCC
Confidence 7899999999999999999998765555666666766666666653 2689999999644 4445567899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH--HHHHHHHHHhhHhhhccC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI--YDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~ 582 (654)
++++|||++ ++.+++.+..|..++..... ....|+++|+||+|+.+.++. .++....+.. .
T Consensus 75 ~~ilv~d~~---------~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~---~---- 137 (170)
T cd04108 75 AIIIVFDLT---------DVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA---E---- 137 (170)
T ss_pred EEEEEEECc---------CHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCccccccccHHHHHHHHH---H----
Confidence 999999998 67888888888887654321 124689999999998654332 1212212211 0
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
...+++++||++|. ||+++|+.+++++.++
T Consensus 138 ----------~~~~~~e~Sa~~g~-~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 138 ----------MQAEYWSVSALSGE-NVREFFFRVAALTFEL 167 (170)
T ss_pred ----------cCCeEEEEECCCCC-CHHHHHHHHHHHHHHc
Confidence 11358999999999 9999999999887543
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.85 E-value=3.6e-20 Score=178.73 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=116.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|..+||||||+++++...+.....|+++.++....+.+++. ..+.+|||+|..+ +...+..+++.||
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~~~~~~~~~a~ 74 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE-------FINMLPLVCNDAV 74 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh-------HHHhhHHHCcCCC
Confidence 7899999999999999999998765555666666666667777653 2689999999654 3344557889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh-----HHHHHHHHHHHHhhHhhh
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA-----QEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~-----~~v~~~~~~~~~~~~~~~ 579 (654)
++++|||++ ++.+++.+..|..++..... ...| |+|+||+|+... +.......+.++.
T Consensus 75 ~iilv~D~t---------~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~----- 137 (182)
T cd04128 75 AILFMFDLT---------RKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAK----- 137 (182)
T ss_pred EEEEEEECc---------CHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHH-----
Confidence 999999998 78899999989887754322 3456 789999998531 1111111112221
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.+.+.+-
T Consensus 138 ------------~~~~~~~e~SAk~g~-~v~~lf~~l~~~l~ 166 (182)
T cd04128 138 ------------AMKAPLIFCSTSHSI-NVQKIFKIVLAKAF 166 (182)
T ss_pred ------------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 112468999999999 99999999987664
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.85 E-value=3e-20 Score=176.33 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=112.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|+|||||++++++..+.....|++. ......+..+.. ..+.+|||||+.++ ......+++.+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 73 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKNICTLQITDTTGSHQF-------PAMQRLSISKG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECCEEEEEEEEECCCCCcc-------hHHHHHHhhcC
Confidence 4799999999999999999998776443333322 222223333332 26889999997543 33444678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcc-cCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~-~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
|++++|||++ ++++++.+..|.+.+...... ..+.|++||+||+|+...+++.......++.
T Consensus 74 ~~~ilv~d~~---------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------- 136 (165)
T cd04140 74 HAFILVYSVT---------SKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT-------- 136 (165)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH--------
Confidence 9999999998 778888888887777654321 2568999999999997644443322222221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
....+++++||++|. ||+++|+.|..+
T Consensus 137 ---------~~~~~~~e~SA~~g~-~v~~~f~~l~~~ 163 (165)
T cd04140 137 ---------EWNCAFMETSAKTNH-NVQELFQELLNL 163 (165)
T ss_pred ---------HhCCcEEEeecCCCC-CHHHHHHHHHhc
Confidence 112368999999999 999999998754
No 57
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.85 E-value=3e-20 Score=180.84 Aligned_cols=166 Identities=15% Similarity=0.080 Sum_probs=115.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|..+||||||+.++....+.....|++.. .....+.+++. ..+.+|||||+.++ ...+..+++.|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~e~~-------~~l~~~~~~~a 75 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD-NYSAQTAVDGRTVSLNLWDTAGQEEY-------DRLRTLSYPQT 75 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe-eeEEEEEECCEEEEEEEEECCCchhh-------hhhhhhhccCC
Confidence 48999999999999999999987665544554433 33334555542 26889999996554 33445789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLK 576 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~ 576 (654)
|++++|||++ ++.+|+.+. .|..++... ..+.|++||+||+||.+.+...+.+.+. ..+..
T Consensus 76 ~~~ilvydit---------~~~Sf~~~~~~w~~~i~~~---~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 76 NVFIICFSIA---------SPSSYENVRHKWHPEVCHH---CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhh---CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence 9999999999 788999986 587766543 2469999999999997543221111110 00000
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
++.. ..+..++|++||++|. ||+++|+.+++.+-
T Consensus 144 ~~a~----------~~~~~~~~e~SAk~g~-~v~e~f~~l~~~~~ 177 (191)
T cd01875 144 ALAK----------QIHAVKYLECSALNQD-GVKEVFAEAVRAVL 177 (191)
T ss_pred HHHH----------HcCCcEEEEeCCCCCC-CHHHHHHHHHHHHh
Confidence 1110 0112368999999999 99999999998663
No 58
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=2.5e-20 Score=181.50 Aligned_cols=167 Identities=19% Similarity=0.173 Sum_probs=121.2
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccC-CCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIAS-YPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~-~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
||+++|.+|+|||||++++.+..+.... .++++.++....+.+++. ..+.+|||||..+ +...+..+++.+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-------FRSVTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH-------HHHhhHHHccCC
Confidence 7999999999999999999988765433 444444554445666542 2689999999533 444455788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|...+.... ..+.|++||+||+|+...+.+..+..+.+..
T Consensus 75 d~~i~v~D~~---------~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~--------- 134 (191)
T cd04112 75 HALLLLYDIT---------NKASFDNIRAWLTEIKEYA--QEDVVIMLLGNKADMSGERVVKREDGERLAK--------- 134 (191)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEcccchhccccCHHHHHHHHH---------
Confidence 9999999998 6778888888888776542 2368999999999997544333222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHhh
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQ 628 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~~ 628 (654)
..+.+++++||++|. ||+++|+.|++.+.....+..
T Consensus 135 --------~~~~~~~e~Sa~~~~-~v~~l~~~l~~~~~~~~~~~~ 170 (191)
T cd04112 135 --------EYGVPFMETSAKTGL-NVELAFTAVAKELKHRKYEQP 170 (191)
T ss_pred --------HcCCeEEEEeCCCCC-CHHHHHHHHHHHHHHhccccC
Confidence 112468999999999 999999999988865544433
No 59
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.5e-20 Score=185.39 Aligned_cols=160 Identities=15% Similarity=0.090 Sum_probs=117.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|..+||||||+++++...+.....|++...+ ...+.+++. ..+.||||||..+ +......+++.|
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~-------~~~~~~~~~~~a 85 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPY-------YDNVRPLCYSDS 85 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchh-------hHHHHHHHcCCC
Confidence 4899999999999999999998776555555554443 344566543 2789999999544 444455789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHH-HHHHHHHHHHhhcccCCCCEEEEEeCCCccCh------------HHHHHHHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVET-VLLLNKELELYKMNLLEKPIILLVNKMDVEGA------------QEIYDGIRD 570 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~-~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~------------~~v~~~~~~ 570 (654)
|++++|||++ ++.+|+. +..|..++.... .+.|+|||+||+|+.+. +.+..+..+
T Consensus 86 d~vIlVyDit---------~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~ 153 (232)
T cd04174 86 DAVLLCFDIS---------RPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC 153 (232)
T ss_pred cEEEEEEECC---------ChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHH
Confidence 9999999999 7889987 478988876543 36899999999998642 223333333
Q ss_pred HHHhhHhhhccCCCCCCcccccccc-ceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQ-SILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.++. ..++ +||+|||++|+.||+++|+.++..+-
T Consensus 154 ~~a~-----------------~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 154 ALAK-----------------QLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHH-----------------HcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 3332 1123 58999999996369999999988763
No 60
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=4.1e-20 Score=175.21 Aligned_cols=160 Identities=19% Similarity=0.142 Sum_probs=122.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.++||||||++++.+..+...+.|+++.++....+..++.. .+.+|||||+.+ +......+++.|
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHCCC
Confidence 489999999999999999999987766677887777777777777632 688999999543 444455788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|+|++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+..
T Consensus 77 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~--------- 136 (165)
T cd01868 77 VGALLVYDIT---------KKQTFENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE--------- 136 (165)
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccccCCHHHHHHHHH---------
Confidence 9999999998 6778888888888775442 2358999999999997654432222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|+ ||+++|+.+.+.+
T Consensus 137 --------~~~~~~~~~Sa~~~~-~v~~l~~~l~~~i 164 (165)
T cd01868 137 --------KNGLSFIETSALDGT-NVEEAFKQLLTEI 164 (165)
T ss_pred --------HcCCEEEEEECCCCC-CHHHHHHHHHHHh
Confidence 112468999999999 9999999987653
No 61
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.85 E-value=4.8e-20 Score=174.61 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=116.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|+|||||+++++...+ ...+++++.+.....+.+++. ..+.+|||||+.+ +......+++.+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 73 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-------FTAMRDLYMKNG 73 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEECCCccc-------chhHHHHHHhhC
Confidence 3799999999999999999997644 333444444444556666642 2567999999644 444455789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ...+.|++||+||+|+.+.+.+.....+.+.+ .
T Consensus 74 d~~ilv~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~----- 135 (164)
T cd04175 74 QGFVLVYSIT---------AQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLAR---Q----- 135 (164)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHHHHHHHH---H-----
Confidence 9999999998 6778888888877775432 23578999999999997543332222222221 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...+++++||++|. ||+++|+.+.+.+.
T Consensus 136 ---------~~~~~~~~Sa~~~~-~v~~~~~~l~~~l~ 163 (164)
T cd04175 136 ---------WGCAFLETSAKAKI-NVNEIFYDLVRQIN 163 (164)
T ss_pred ---------hCCEEEEeeCCCCC-CHHHHHHHHHHHhh
Confidence 12368999999999 99999999987653
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.84 E-value=3.7e-20 Score=175.19 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=116.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++++...+.....+ +..+.....+.+++. ..+.+|||||+.++. ..+..+++.|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a 73 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDP-TIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-chhheEEEEEEECCEEEEEEEEECCCccccc-------chHHHHHhhC
Confidence 3799999999999999999998766544333 334455556666653 257899999965543 3444788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+.....+.......+.+
T Consensus 74 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~--------- 134 (163)
T cd04176 74 QGFIVVYSLV---------NQQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAE--------- 134 (163)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcCccCHHHHHHHHH---------
Confidence 9999999998 7788999988888876542 22578999999999986543332222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|. ||+++|+.+++.+
T Consensus 135 --------~~~~~~~~~Sa~~~~-~v~~l~~~l~~~l 162 (163)
T cd04176 135 --------EWGCPFMETSAKSKT-MVNELFAEIVRQM 162 (163)
T ss_pred --------HhCCEEEEecCCCCC-CHHHHHHHHHHhc
Confidence 012368999999999 9999999998654
No 63
>PTZ00369 Ras-like protein; Provisional
Probab=99.84 E-value=6.1e-20 Score=178.38 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=117.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|+|||||++++.+..+.....|++. ......+.+++.. .+.+|||||+.+ +...+..+++.+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~l~~~~~~~~ 77 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCLLDILDTAGQEE-------YSAMRDQYMRTG 77 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchh-hEEEEEEEECCEEEEEEEEeCCCCcc-------chhhHHHHhhcC
Confidence 5899999999999999999998765444334333 3334455565532 578999999654 334455789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++++++.+..|..++.... ...+.|++||+||+|+.+.+.+.......+.+.
T Consensus 78 d~iilv~D~s---------~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~-------- 139 (189)
T PTZ00369 78 QGFLCVYSIT---------SRSSFEEIASFREQILRVK-DKDRVPMILVGNKCDLDSERQVSTGEGQELAKS-------- 139 (189)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHH--------
Confidence 9999999998 7788999999888876542 224789999999999875544333222222210
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...++|++||++|. ||+++|+.+.+.+.
T Consensus 140 ---------~~~~~~e~Sak~~~-gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 140 ---------FGIPFLETSAKQRV-NVDEAFYELVREIR 167 (189)
T ss_pred ---------hCCEEEEeeCCCCC-CHHHHHHHHHHHHH
Confidence 12368999999999 99999999987664
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.84 E-value=6.1e-20 Score=173.78 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=115.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|++|+|||||++++++..+.....+ ++.+.....+.+++. ..+.+|||||+.+ +......+++.+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-------~~~~~~~~~~~~~ 73 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDP-TIEDSYRKQIEIDGEVCLLDILDTAGQEE-------FSAMRDQYMRTGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCC-chhhhEEEEEEECCEEEEEEEEECCCccc-------chHHHHHHHhhCC
Confidence 799999999999999999998765443333 344444555555543 2678999999654 3344557889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++++++.+..|...+.... ...+.|+++|+||+|+.+.+.+..+....+..
T Consensus 74 ~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~---------- 133 (164)
T smart00173 74 GFLLVYSIT---------DRQSFEEIKKFREQILRVK-DRDDVPIVLVGNKCDLESERVVSTEEGKELAR---------- 133 (164)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceEcHHHHHHHHH----------
Confidence 999999998 6778888888877765432 22468999999999997654333222222221
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....++|++||++|. |++++|+.+.+.+.
T Consensus 134 -------~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~ 162 (164)
T smart00173 134 -------QWGCPFLETSAKERV-NVDEAFYDLVREIR 162 (164)
T ss_pred -------HcCCEEEEeecCCCC-CHHHHHHHHHHHHh
Confidence 012468999999999 99999999987654
No 65
>PLN03110 Rab GTPase; Provisional
Probab=99.84 E-value=5.4e-20 Score=182.53 Aligned_cols=162 Identities=19% Similarity=0.108 Sum_probs=127.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|+.|||||||+++|.+..+.....++++.++....+.+++.. .+.+|||||+. .+...+..+++.+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~-------~~~~~~~~~~~~~ 85 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE-------RYRAITSAYYRGA 85 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHhCCC
Confidence 589999999999999999999987766667777777777777776532 78999999954 3455566789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|||++ ++.+++.+..|...+.... ..+.|+++|+||+|+...+++..+....+..
T Consensus 86 ~~~ilv~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~--------- 145 (216)
T PLN03110 86 VGALLVYDIT---------KRQTFDNVQRWLRELRDHA--DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE--------- 145 (216)
T ss_pred CEEEEEEECC---------ChHHHHHHHHHHHHHHHhC--CCCCeEEEEEEChhcccccCCCHHHHHHHHH---------
Confidence 9999999998 6788999888887765432 2478999999999997655554444433332
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....+++++||++|. ||+++|+.+.+.+.+
T Consensus 146 --------~~~~~~~e~SA~~g~-~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 146 --------KEGLSFLETSALEAT-NVEKAFQTILLEIYH 175 (216)
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 123479999999999 999999999887754
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.84 E-value=6e-20 Score=173.64 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=115.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|+|||||++++++..+. ..+++++.+.....+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV-TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE-------FSAMREQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceEEEEEEECCEEEEEEEEECCCCcc-------hhHHHHHHHhhC
Confidence 48999999999999999999986553 33444444444445556552 2588999999654 344455788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ...+.|++||+||+|+...+.+..+....+.+
T Consensus 75 ~~~ilv~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~--------- 135 (164)
T cd04145 75 EGFLLVFSVT---------DRGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQRKVSREEGQELAR--------- 135 (164)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCccccccceecHHHHHHHHH---------
Confidence 9999999998 6778888888887765432 23468999999999997654333222222211
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....++|++||++|. ||+++|+.+.+.+
T Consensus 136 --------~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~ 163 (164)
T cd04145 136 --------KLKIPYIETSAKDRL-NVDKAFHDLVRVI 163 (164)
T ss_pred --------HcCCcEEEeeCCCCC-CHHHHHHHHHHhh
Confidence 012368999999999 9999999998764
No 67
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.84 E-value=5.3e-20 Score=182.05 Aligned_cols=172 Identities=16% Similarity=0.038 Sum_probs=114.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
||+++|.+++|||||+++++...+.. ..+++..++.. ..+.. ..+.+|||||+.++ ......+++.+|+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~--~~~~~-~~l~iwDt~G~e~~-------~~l~~~~~~~ad~ 70 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL--KQWGP-YNISIWDTAGREQF-------HGLGSMYCRGAAA 70 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE--EEeeE-EEEEEEeCCCcccc-------hhhHHHHhccCCE
Confidence 78999999999999999999977642 34443333322 22332 36899999996543 3344578999999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccC-------------------hHHHHH
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG-------------------AQEIYD 566 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~-------------------~~~v~~ 566 (654)
+|+|||++ ++++|+.+..|...+... ...+.|+|||+||+|+.+ .+++..
T Consensus 71 ~IlV~Dvt---------~~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~ 139 (220)
T cd04126 71 VILTYDVS---------NVQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTL 139 (220)
T ss_pred EEEEEECC---------CHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCH
Confidence 99999999 788999988776655432 234689999999999975 233333
Q ss_pred HHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 567 GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
+..+.+++- ......-..+.......+||+|||++|. ||+++|+.+++.+...
T Consensus 140 ~e~~~~a~~---~~~~~~~~~~~~~~~~~~~~E~SA~tg~-~V~elf~~i~~~~~~~ 192 (220)
T cd04126 140 EDAKAFYKR---INKYKMLDEDLSPAAEKMCFETSAKTGY-NVDELFEYLFNLVLPL 192 (220)
T ss_pred HHHHHHHHH---hCccccccccccccccceEEEeeCCCCC-CHHHHHHHHHHHHHHH
Confidence 333333321 0000000000001112478999999999 9999999999877543
No 68
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=6.4e-20 Score=181.24 Aligned_cols=164 Identities=18% Similarity=0.127 Sum_probs=124.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC--ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~--~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.||+++|..|||||||++++++..+.....++++.++....+.+.++ ..+.+|||||+.+ +......+++.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ 75 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-------FRSITRSYYRN 75 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-------HHHHHHHHhcC
Confidence 48999999999999999999998776666677777777767766432 2688999999643 44445578899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|..++.... .....|++||+||+|+.+.+.+..+..+.+++.
T Consensus 76 ~d~iilv~D~~---------~~~Sf~~l~~~~~~i~~~~-~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~------- 138 (211)
T cd04111 76 SVGVLLVFDIT---------NRESFEHVHDWLEEARSHI-QPHRPVFILVGHKCDLESQRQVTREEAEKLAKD------- 138 (211)
T ss_pred CcEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEEccccccccccCHHHHHHHHHH-------
Confidence 99999999998 7788999988888775432 223578899999999976544433333333321
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
...+++++||++|+ ||+++|+.|++.+.+.
T Consensus 139 ----------~~~~~~e~Sak~g~-~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 139 ----------LGMKYIETSARTGD-NVEEAFELLTQEIYER 168 (211)
T ss_pred ----------hCCEEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 12468999999999 9999999999866443
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.84 E-value=6.5e-20 Score=174.79 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=117.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+++|||||++++.+..+.....++++.++....+.+++.. .+.+|||||+.+ +...+..+++.+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~ 78 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-------FRSLRTPFYRGS 78 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH-------HHHhHHHHhcCC
Confidence 589999999999999999999876655555655555555566665532 678999999543 444556789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
|++++|||++ ++.+++.+..|..++..... ...+.|++||+||+|+.......++..+...+
T Consensus 79 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------- 142 (170)
T cd04116 79 DCCLLTFAVD---------DSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE------- 142 (170)
T ss_pred CEEEEEEECC---------CHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH-------
Confidence 9999999998 77889999888887754321 12468999999999986322112222221111
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
....++|++||++|. ||.++|+.+.+.
T Consensus 143 ----------~~~~~~~e~Sa~~~~-~v~~~~~~~~~~ 169 (170)
T cd04116 143 ----------NGDYPYFETSAKDAT-NVAAAFEEAVRR 169 (170)
T ss_pred ----------CCCCeEEEEECCCCC-CHHHHHHHHHhh
Confidence 112368999999999 999999998864
No 70
>KOG0083|consensus
Probab=99.84 E-value=1.8e-21 Score=167.17 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=130.1
Q ss_pred EEcCCCCChhhHHHHHHhcCCCccC-CCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcccEE
Q psy1086 429 LVGFPNAGKSTFLKAISRARPKIAS-YPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLI 506 (654)
Q Consensus 429 ~~G~~~~GKstl~~~l~~~~~~~~~-~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ 506 (654)
++|.+++|||+|+-++....+.... ..++++++..+.+..++.+ ++++|||+|+++ ++.-+..|||.||++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqer-------frsvt~ayyrda~al 74 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQER-------FRSVTHAYYRDADAL 74 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHH-------HhhhhHhhhccccee
Confidence 6899999999999998776554433 3456678888888887754 799999999655 444555899999999
Q ss_pred EEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCC
Q psy1086 507 AMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEF 586 (654)
Q Consensus 507 ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 586 (654)
+++||++ ++.||+..+.|..++..+. ...+.+++++||||+...+.+..+..+.+++-
T Consensus 75 lllydia---------nkasfdn~~~wlsei~ey~--k~~v~l~llgnk~d~a~er~v~~ddg~kla~~----------- 132 (192)
T KOG0083|consen 75 LLLYDIA---------NKASFDNCQAWLSEIHEYA--KEAVALMLLGNKCDLAHERAVKRDDGEKLAEA----------- 132 (192)
T ss_pred eeeeecc---------cchhHHHHHHHHHHHHHHH--HhhHhHhhhccccccchhhccccchHHHHHHH-----------
Confidence 9999999 8999999999999998774 33578899999999988777777777666652
Q ss_pred CccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 587 QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 587 ~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
-.+|+.++|||||. ||+..|-.|++.+.+.
T Consensus 133 ------y~ipfmetsaktg~-nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 133 ------YGIPFMETSAKTGF-NVDLAFLAIAEELKKL 162 (192)
T ss_pred ------HCCCceeccccccc-cHhHHHHHHHHHHHHh
Confidence 24689999999999 9999999999888754
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.84 E-value=7.6e-20 Score=172.28 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=113.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|||||||++++++..+.....| ++.+.....+.+++. ..+.+|||||..+ +...+..+++.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~l~~~~~~~~ 73 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-TIEDSYRKQVVIDGETCLLDILDTAGQEE-------YSAMRDQYMRTG 73 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCC-cchheEEEEEEECCEEEEEEEEECCCCcc-------hHHHHHHHHhcC
Confidence 3799999999999999999998765443333 333444455566552 2477899999543 445556789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+........+..+ +.+
T Consensus 74 ~~~i~v~~~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~--------- 133 (162)
T cd04138 74 EGFLCVFAIN---------SRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAARTVSSRQGQD-LAK--------- 133 (162)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccceecHHHHHH-HHH---------
Confidence 9999999998 6778888888877765432 2347899999999998753211122111 111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|. ||+++|+.+.+.+
T Consensus 134 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 161 (162)
T cd04138 134 --------SYGIPYIETSAKTRQ-GVEEAFYTLVREI 161 (162)
T ss_pred --------HhCCeEEEecCCCCC-CHHHHHHHHHHHh
Confidence 012368999999999 9999999998654
No 72
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.84 E-value=7.3e-20 Score=173.98 Aligned_cols=157 Identities=20% Similarity=0.120 Sum_probs=112.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|+.|||||||+++++...+.....++...+.....+..++. ..+.+|||||+.++.... ..+++.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~~d 74 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR-------DGYYIGGQ 74 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc-------HHHhcCCC
Confidence 7999999999999999999976654444444433443333333322 378999999976544322 25678999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ +..+++.+..|..++.... .+.|+++|+||+|+... .+..+. ..+..
T Consensus 75 ~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~---~~~piiiv~nK~Dl~~~-~~~~~~-~~~~~---------- 130 (166)
T cd00877 75 CAIIMFDVT---------SRVTYKNVPNWHRDLVRVC---GNIPIVLCGNKVDIKDR-KVKAKQ-ITFHR---------- 130 (166)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhcccc-cCCHHH-HHHHH----------
Confidence 999999998 6788888888888876543 27999999999998732 222111 11211
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....++|++||++|+ ||+++|+.+++.+-
T Consensus 131 -------~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~ 159 (166)
T cd00877 131 -------KKNLQYYEISAKSNY-NFEKPFLWLARKLL 159 (166)
T ss_pred -------HcCCEEEEEeCCCCC-ChHHHHHHHHHHHH
Confidence 123468999999999 99999999997764
No 73
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=6.7e-20 Score=172.88 Aligned_cols=158 Identities=13% Similarity=0.124 Sum_probs=121.4
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|++++|||||++++++..+.....++++.++....+.+++.. .+.+|||||.. .+......+++.+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~-------~~~~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE-------RFRSLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHhccCC
Confidence 78999999999999999999988877778888888888888877632 58999999943 34455667889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++.+++.+..|...+.... ..+.|+++|+||+|+...+....+....+..
T Consensus 75 ~ii~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~---------- 133 (161)
T cd01861 75 VAVVVYDIT---------NRQSFDNTDKWIDDVRDER--GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK---------- 133 (161)
T ss_pred EEEEEEECc---------CHHHHHHHHHHHHHHHHhC--CCCCEEEEEEEChhccccCccCHHHHHHHHH----------
Confidence 999999998 6778888888877764332 1268999999999996443322222222221
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
..+.+++++||++|. |++++|+.+.+.
T Consensus 134 -------~~~~~~~~~Sa~~~~-~v~~l~~~i~~~ 160 (161)
T cd01861 134 -------ELNAMFIETSAKAGH-NVKELFRKIASA 160 (161)
T ss_pred -------HhCCEEEEEeCCCCC-CHHHHHHHHHHh
Confidence 112468999999999 999999999864
No 74
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=8.4e-20 Score=177.23 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=121.8
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|..+||||||++++.+..+.....++.+.+.....+.+++. ..+.+|||||..+ +...+..+++.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~-------~~~~~~~~~~~~d 74 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER-------FRSLNNSYYRGAH 74 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHhhHHHHccCCC
Confidence 7999999999999999999988775545666666666566666553 2578999999543 3445567889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++.+++.+..|..++.... ..+.|+++|+||+|+.+.+.+..+....++.
T Consensus 75 ~iilv~d~~---------~~~s~~~i~~~~~~i~~~~--~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~---------- 133 (188)
T cd04125 75 GYLLVYDVT---------DQESFENLKFWINEINRYA--RENVIKVIVANKSDLVNNKVVDSNIAKSFCD---------- 133 (188)
T ss_pred EEEEEEECc---------CHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECCCCcccccCCHHHHHHHHH----------
Confidence 999999998 6788999988888876542 2358999999999998655443333333322
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....+++++||++|. ||+++|+.+.+.+..
T Consensus 134 -------~~~~~~~evSa~~~~-~i~~~f~~l~~~~~~ 163 (188)
T cd04125 134 -------SLNIPFFETSAKQSI-NVEEAFILLVKLIIK 163 (188)
T ss_pred -------HcCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 112368999999999 999999999887753
No 75
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=6.5e-20 Score=173.95 Aligned_cols=160 Identities=21% Similarity=0.201 Sum_probs=118.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|++|+|||||++++....+.....++.+.+.....+.+++.. .+.+|||||.. .+...+..+++.+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~-------~~~~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE-------RFRTITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH-------HHHHHHHHHhccC
Confidence 589999999999999999998876654445555556666667776532 68999999943 3455566788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ..+.|+++|+||+|+...+++.......+.+ .
T Consensus 77 d~~llv~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~----- 137 (165)
T cd01864 77 NGAIIAYDIT---------RRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQREVLFEEACTLAE---K----- 137 (165)
T ss_pred CEEEEEEECc---------CHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHH---H-----
Confidence 9999999998 6778888888888775432 3468999999999997554332211112221 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.+...++++||++|. |++++|+.+.+.
T Consensus 138 --------~~~~~~~e~Sa~~~~-~v~~~~~~l~~~ 164 (165)
T cd01864 138 --------NGMLAVLETSAKESQ-NVEEAFLLMATE 164 (165)
T ss_pred --------cCCcEEEEEECCCCC-CHHHHHHHHHHh
Confidence 112358999999999 999999998864
No 76
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.84 E-value=1.1e-19 Score=173.11 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=120.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|+|||||++++++..+.....++++.++....+.+++.. .+.+|||||.. .+......+++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE-------SFRSITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHhccC
Confidence 489999999999999999999987655555666666666667666533 68999999943 3455566888999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ ++.+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+....+..
T Consensus 78 d~il~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~--------- 137 (168)
T cd01866 78 AGALLVYDIT---------RRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAK--------- 137 (168)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHH---------
Confidence 9999999998 6788998888888775442 2468999999999997543332222222211
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....++|++||++|. ||+++|..+++.+
T Consensus 138 --------~~~~~~~e~Sa~~~~-~i~~~~~~~~~~~ 165 (168)
T cd01866 138 --------EHGLIFMETSAKTAS-NVEEAFINTAKEI 165 (168)
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 112358999999999 9999999988765
No 77
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.84 E-value=9.7e-20 Score=181.23 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=132.1
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCC-CcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhh-c
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASY-PFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE-R 502 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~-~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~-~ 502 (654)
||+++|.+|||||||+++++...+....+ ++...+.....+.+++. ..+.+|||||+.. .....+++ .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~~ 72 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM---------WTEDSCMQYQ 72 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch---------HHHhHHhhcC
Confidence 79999999999999999998766642333 33222555566666542 3689999999751 11123456 8
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|..++.... ...+.|+|||+||+|+...+++..+..+.++..
T Consensus 73 ad~iilV~d~t---------d~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~------- 135 (221)
T cd04148 73 GDAFVVVYSVT---------DRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARSREVSVQEGRACAVV------- 135 (221)
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccccceecHHHHHHHHHH-------
Confidence 99999999999 7788988888887775432 224789999999999976655443333333221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHH--------hhHhHHHHHHHHHHHHHHHHhhhc
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEE--------EQEMVDRELELVKKLKSSLREHQG 650 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 650 (654)
...+++++||++|. ||+++|+.+.+.+...... ......|+....+++++-|-+..+
T Consensus 136 ----------~~~~~~e~SA~~~~-gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~~~ 200 (221)
T cd04148 136 ----------FDCKFIETSAGLQH-NVDELLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKLVA 200 (221)
T ss_pred ----------cCCeEEEecCCCCC-CHHHHHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHHHhc
Confidence 12358999999999 9999999999988632221 123456788888888887765543
No 78
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.84 E-value=6.6e-20 Score=173.94 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=115.2
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
+|+++|++|+|||||+++++...+ ...+++++.......+.+++.. .+.+|||||..+. .......+++.+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA------DTEQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCccc------ccchHHHHHHhCC
Confidence 589999999999999999988654 3334444433344455565532 5789999997642 1123446889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++.+++.+..|..++........+.|+++|+||+|+...+.+..+....++..
T Consensus 74 ~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--------- 135 (165)
T cd04146 74 GFVLVYSIT---------DRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASE--------- 135 (165)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHH---------
Confidence 999999998 77889999888888765432234799999999999865544333222222220
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.+.+++++||++|..||+++|+.+++.+.
T Consensus 136 --------~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 136 --------LGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred --------cCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 12468999999993289999999987653
No 79
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.84 E-value=9.1e-20 Score=172.13 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=116.5
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC--CC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD--DF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~--~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
||+++|.+++|||||++++.+..+.....++++.+.....+.++ +. .++.+|||||+.+ +...+..+++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 74 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-------FDAITKAYYRG 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-------HHHhHHHHhcC
Confidence 79999999999999999999876655455666666655556554 22 3789999999543 44455678999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++++++.+..|...+... ..+.|+++|+||+|+.....+..+..+.++. .
T Consensus 75 ~~~~v~v~d~~---------~~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~---~---- 135 (162)
T cd04106 75 AQACILVFSTT---------DRESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQAVITNEEAEALAK---R---- 135 (162)
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccccCCCHHHHHHHHH---H----
Confidence 99999999998 677888888887776432 2478999999999997654433222222222 1
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
...++|++||++|. |++++|+.+++.
T Consensus 136 ----------~~~~~~~~Sa~~~~-~v~~l~~~l~~~ 161 (162)
T cd04106 136 ----------LQLPLFRTSVKDDF-NVTELFEYLAEK 161 (162)
T ss_pred ----------cCCeEEEEECCCCC-CHHHHHHHHHHh
Confidence 12368999999999 999999998754
No 80
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.83 E-value=1e-19 Score=178.30 Aligned_cols=160 Identities=16% Similarity=0.075 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|++|+|||||++++.+..+.....++++.+.....+.+++. ..+.+|||||+.. +...+..+++.+
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~a 79 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER-------FRTITSTYYRGT 79 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh-------HHHHHHHHhCCC
Confidence 58999999999999999999987665445566655665566666553 2688999999543 444556789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|||++ ++++++.+..|.+++... ....|++||+||+|+.+...+..+....+..
T Consensus 80 ~~iilv~D~~---------~~~s~~~~~~~~~~i~~~---~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~--------- 138 (199)
T cd04110 80 HGVIVVYDVT---------NGESFVNVKRWLQEIEQN---CDDVCKVLVGNKNDDPERKVVETEDAYKFAG--------- 138 (199)
T ss_pred cEEEEEEECC---------CHHHHHHHHHHHHHHHHh---CCCCCEEEEEECcccccccccCHHHHHHHHH---------
Confidence 9999999998 778899888888876543 2468999999999997654433222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....++|++||++|. ||+++|+.+.+.+-
T Consensus 139 --------~~~~~~~e~Sa~~~~-gi~~lf~~l~~~~~ 167 (199)
T cd04110 139 --------QMGISLFETSAKENI-NVEEMFNCITELVL 167 (199)
T ss_pred --------HcCCEEEEEECCCCc-CHHHHHHHHHHHHH
Confidence 012368999999999 99999999988763
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.83 E-value=1.1e-19 Score=173.31 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=121.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|++|+|||||+++++...+.....++.+.++....+.+++. ..+.+|||||+.++.. ..+..+++.+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~~~ 76 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK------SMVQHYYRNV 76 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH------hhHHHhhcCC
Confidence 58999999999999999999987665455565555666666777653 2689999999643221 2344678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++..... ..+.|++||+||+|+.+.+++..+..+.+++-
T Consensus 77 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------- 138 (170)
T cd04115 77 HAVVFVYDVT---------NMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQVPTDLAQRFADA-------- 138 (170)
T ss_pred CEEEEEEECC---------CHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcCCCHHHHHHHHHH--------
Confidence 9999999998 77889999888887765432 24689999999999976655544444334321
Q ss_pred CCCCccccccccceEEEeeec---CCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKT---NSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAkt---g~~gv~el~~~i~~~~~ 621 (654)
...+++++||++ +. ||+++|..+++.++
T Consensus 139 ---------~~~~~~e~Sa~~~~~~~-~i~~~f~~l~~~~~ 169 (170)
T cd04115 139 ---------HSMPLFETSAKDPSEND-HVEAIFMTLAHKLK 169 (170)
T ss_pred ---------cCCcEEEEeccCCcCCC-CHHHHHHHHHHHhh
Confidence 124689999999 77 99999999987653
No 82
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.83 E-value=6.1e-20 Score=176.07 Aligned_cols=164 Identities=13% Similarity=0.066 Sum_probs=112.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|||||||++++....+.....|++. +.....+.+++. ..+.+|||||+.++. ..+..+++.|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a 73 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYD-------RLRPLSYPQT 73 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEECCCccchh-------hhhhhhcccC
Confidence 4799999999999999999998766444445443 333345566552 267899999976543 2333688999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLK 576 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~ 576 (654)
|++++|||++ ++++++.+. .|..++.... .+.|+|||+||+|+.+..++.+.+... .++..
T Consensus 74 ~~~ilv~d~~---------~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~ 141 (175)
T cd01874 74 DVFLVCFSVV---------SPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHH
Confidence 9999999998 788999886 5877775432 368999999999986543322211110 00000
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+..+ ..+...+|++||++|+ ||+++|+.+++.
T Consensus 142 ~~a~----------~~~~~~~~e~SA~tg~-~v~~~f~~~~~~ 173 (175)
T cd01874 142 KLAR----------DLKAVKYVECSALTQK-GLKNVFDEAILA 173 (175)
T ss_pred HHHH----------HhCCcEEEEecCCCCC-CHHHHHHHHHHH
Confidence 0100 0122468999999999 999999998763
No 83
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.83 E-value=6.6e-21 Score=189.11 Aligned_cols=171 Identities=32% Similarity=0.575 Sum_probs=130.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+|||+|++||||||+.||+.++.+++|||||+.|..|++.|.+ .++.+.|+||++++++.+.+.+.+++..+..||+
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g-a~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG-AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC-ceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 799999999999999999999999999999999999999999998 4899999999999999999999999999999999
Q ss_pred HHHhhcccCcc--c----------CC-----------------------CCCc-cChHHHHHHHH---------------
Q psy1086 258 IAMIVDVNGFQ--L----------GL-----------------------KHPK-RSCVETVLLLN--------------- 286 (654)
Q Consensus 258 il~vvd~~~~~--l----------~~-----------------------~~~~-~~~~~~l~~~~--------------- 286 (654)
+++|+|+.... . .+ ..+. .-...++..+.
T Consensus 144 IiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~d 223 (365)
T COG1163 144 IIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRED 223 (365)
T ss_pred EEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecC
Confidence 99999886321 0 00 0000 01111222111
Q ss_pred ----HHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchH
Q psy1086 287 ----KELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVN 362 (654)
Q Consensus 287 ----~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~ 362 (654)
.-+..+..+...+|.++++||+|+...+ .++.+.+. ...+++||..+ .|++
T Consensus 224 vTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e-~~~~l~~~-----------------------~~~v~isa~~~-~nld 278 (365)
T COG1163 224 VTLDDLIDALEGNRVYKPALYVVNKIDLPGLE-ELERLARK-----------------------PNSVPISAKKG-INLD 278 (365)
T ss_pred CcHHHHHHHHhhcceeeeeEEEEecccccCHH-HHHHHHhc-----------------------cceEEEecccC-CCHH
Confidence 1122223445678999999999998743 33333222 15899999999 9999
Q ss_pred HHHHHHHHHHHH
Q psy1086 363 DAKLKIRSILDL 374 (654)
Q Consensus 363 ~L~~~i~~~l~~ 374 (654)
+|.+.|+..+.-
T Consensus 279 ~L~e~i~~~L~l 290 (365)
T COG1163 279 ELKERIWDVLGL 290 (365)
T ss_pred HHHHHHHHhhCe
Confidence 999999987754
No 84
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.83 E-value=8.7e-20 Score=181.32 Aligned_cols=158 Identities=22% Similarity=0.134 Sum_probs=117.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|..|||||||+++++...+.....+++..+.....+..++. .++.+|||||+.++ ...+..+++.+
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 86 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHG 86 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------hhhhHHHcccc
Confidence 58999999999999999999887665555565555555555555432 37899999997554 33344688999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... .+.|++||+||+|+.......+++ .+..
T Consensus 87 ~~~ilvfD~~---------~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~--~~~~--------- 143 (219)
T PLN03071 87 QCAIIMFDVT---------ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV--TFHR--------- 143 (219)
T ss_pred cEEEEEEeCC---------CHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH--HHHH---------
Confidence 9999999999 7889999999988876442 468999999999986422111111 1111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....++|++||++|+ ||+++|+.+++.+-
T Consensus 144 --------~~~~~~~e~SAk~~~-~i~~~f~~l~~~~~ 172 (219)
T PLN03071 144 --------KKNLQYYEISAKSNY-NFEKPFLYLARKLA 172 (219)
T ss_pred --------hcCCEEEEcCCCCCC-CHHHHHHHHHHHHH
Confidence 122468999999999 99999999998774
No 85
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.83 E-value=1.1e-19 Score=191.81 Aligned_cols=160 Identities=25% Similarity=0.329 Sum_probs=119.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc-cchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN-LGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~-~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+|+|++......+.+++|+++....+.++++..+.+|||||+.+..+.. ......++.+++.|
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~A 269 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREA 269 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999998866678899999999999999655689999999985532211 12234466789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+.+.+..|...+... ...+.|+++|+||+|+.+...+.. ...
T Consensus 270 Dlil~VvD~s---------~~~~~~~~~~~~~~L~~l--~~~~~piIlV~NK~Dl~~~~~v~~-----~~~--------- 324 (351)
T TIGR03156 270 DLLLHVVDAS---------DPDREEQIEAVEKVLEEL--GAEDIPQLLVYNKIDLLDEPRIER-----LEE--------- 324 (351)
T ss_pred CEEEEEEECC---------CCchHHHHHHHHHHHHHh--ccCCCCEEEEEEeecCCChHhHHH-----HHh---------
Confidence 9999999998 344555555555544432 224689999999999975432210 100
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.+.+++++||++|. |+++|++.|.+.
T Consensus 325 ---------~~~~~i~iSAktg~-GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 ---------GYPEAVFVSAKTGE-GLDLLLEAIAER 350 (351)
T ss_pred ---------CCCCEEEEEccCCC-CHHHHHHHHHhh
Confidence 01247999999999 999999998764
No 86
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.83 E-value=8.9e-20 Score=174.50 Aligned_cols=170 Identities=41% Similarity=0.683 Sum_probs=121.8
Q ss_pred EEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEE
Q psy1086 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAM 508 (654)
Q Consensus 429 ~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~il 508 (654)
++|++|+|||||++++.+.......++++|.++..+.+.++++.++.+|||||+.+.......+...+..+++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 48999999999999999987666678888999988888887335899999999866544444455566778899999999
Q ss_pred EEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcc-----cCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 509 IVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-----LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 509 V~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~-----~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|+|+++... .....+++....|..++...... ..+.|+++|+||+|+...............
T Consensus 81 v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---------- 147 (176)
T cd01881 81 VVDASEDDD---IGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELA---------- 147 (176)
T ss_pred EEeccCCcc---ccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHh----------
Confidence 999983100 00014566666676666533211 246899999999999866544332211110
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.....+++++||+++. |++++++.+.+.
T Consensus 148 -------~~~~~~~~~~Sa~~~~-gl~~l~~~l~~~ 175 (176)
T cd01881 148 -------LEEGAEVVPISAKTEE-GLDELIRAIYEL 175 (176)
T ss_pred -------cCCCCCEEEEehhhhc-CHHHHHHHHHhh
Confidence 1223468999999999 999999988764
No 87
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=1.8e-19 Score=170.48 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=113.4
Q ss_pred eEEEEcCCCCChhhHHHHHHhc-CCCc-cCCCcccccceeEEEEeCC--CceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRA-RPKI-ASYPFTTIKPNVGVITFDD--FRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~-~~~~-~~~~~~t~~~~~~~v~~~~--~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
||+++|.+|+|||||++++... ..+. ...+++..+.....+.+++ ...+.+|||||+. .+......+++
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-------~~~~~~~~~~~ 74 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-------LYSDMVSNYWE 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-------HHHHHHHHHhC
Confidence 7999999999999999999864 2233 3344444555445555542 2379999999953 33444567889
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.+|++++|+|++ ++.+++.+..|.+++.... .+.|+++|+||+|+.+..++.....+.+..
T Consensus 75 ~~d~ii~v~d~~---------~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------- 135 (164)
T cd04101 75 SPSVFILVYDVS---------NKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ------- 135 (164)
T ss_pred CCCEEEEEEECc---------CHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHH-------
Confidence 999999999998 6778888888887765432 468999999999997654433322222221
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+.+++++||++|. ||+++|+.+++..
T Consensus 136 ----------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 163 (164)
T cd04101 136 ----------ANQLKFFKTSALRGV-GYEEPFESLARAF 163 (164)
T ss_pred ----------HcCCeEEEEeCCCCC-ChHHHHHHHHHHh
Confidence 112468999999999 9999999998753
No 88
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=4e-20 Score=170.91 Aligned_cols=154 Identities=29% Similarity=0.472 Sum_probs=108.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh--hc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV--ER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~--~~ 502 (654)
++|+++|.+|||||||+|+|++....++++|++|++...+.+.+.+ ..+.++||||+.+..+..+ -...+..++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~-~~~~lvDlPG~ysl~~~s~-ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD-QQVELVDLPGIYSLSSKSE-EERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT-EEEEEEE----SSSSSSSH-HHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC-ceEEEEECCCcccCCCCCc-HHHHHHHHHhhcC
Confidence 3799999999999999999999998889999999999999999988 5899999999877544332 122333444 58
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
.|++++|+|++.. +.-..+..++. ..++|+|+|+||+|....+.+..... .+.+ .
T Consensus 79 ~D~ii~VvDa~~l------------~r~l~l~~ql~-----e~g~P~vvvlN~~D~a~~~g~~id~~-~Ls~---~---- 133 (156)
T PF02421_consen 79 PDLIIVVVDATNL------------ERNLYLTLQLL-----ELGIPVVVVLNKMDEAERKGIEIDAE-KLSE---R---- 133 (156)
T ss_dssp SSEEEEEEEGGGH------------HHHHHHHHHHH-----HTTSSEEEEEETHHHHHHTTEEE-HH-HHHH---H----
T ss_pred CCEEEEECCCCCH------------HHHHHHHHHHH-----HcCCCEEEEEeCHHHHHHcCCEECHH-HHHH---H----
Confidence 9999999999831 22122333332 24799999999999875543221111 1221 1
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKI 616 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i 616 (654)
-++|++++||++++ |+++|++.|
T Consensus 134 ----------Lg~pvi~~sa~~~~-g~~~L~~~I 156 (156)
T PF02421_consen 134 ----------LGVPVIPVSARTGE-GIDELKDAI 156 (156)
T ss_dssp ----------HTS-EEEEBTTTTB-THHHHHHHH
T ss_pred ----------hCCCEEEEEeCCCc-CHHHHHhhC
Confidence 13589999999999 999999875
No 89
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.83 E-value=1.5e-19 Score=170.63 Aligned_cols=158 Identities=18% Similarity=0.124 Sum_probs=118.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|++++|||||++++.+..+.....++.+.+.....+.+++. ..+.+|||||+.+ +......+++.+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~~ 74 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-------FRSVTRSYYRGAA 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH-------HHHhHHHHhcCCC
Confidence 7999999999999999999988776655666666666666666653 2688999999643 3444557889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++.+++.+..|..++... ...+.|++||+||+|+...+.+..+....+..
T Consensus 75 ~~i~v~d~~---------~~~s~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~---------- 133 (161)
T cd04113 75 GALLVYDIT---------NRTSFEALPTWLSDARAL--ASPNIVVILVGNKSDLADQREVTFLEASRFAQ---------- 133 (161)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHh--CCCCCeEEEEEEchhcchhccCCHHHHHHHHH----------
Confidence 999999998 677888888887766533 23578999999999997644332222222221
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
..+.+++++||+++. |++++|+.+++.
T Consensus 134 -------~~~~~~~~~Sa~~~~-~i~~~~~~~~~~ 160 (161)
T cd04113 134 -------ENGLLFLETSALTGE-NVEEAFLKCARS 160 (161)
T ss_pred -------HcCCEEEEEECCCCC-CHHHHHHHHHHh
Confidence 011468999999999 999999999864
No 90
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=6.7e-20 Score=188.10 Aligned_cols=165 Identities=25% Similarity=0.280 Sum_probs=116.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc-ccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~-~~~~~~~~~~~~~~a 503 (654)
+|+++|.+|+|||||+|+|++..... +..++||++...+....++ .++.+|||||+.+.... ...+...+..+++.|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987654 5678888887666555554 47999999998765221 122344566788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++.. .+.+ ..+...+. ..+.|+++|+||+|+...........+ +.. .
T Consensus 81 Dvvl~VvD~~~~---------~~~~--~~i~~~l~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~-~~~---~----- 135 (270)
T TIGR00436 81 DLILFVVDSDQW---------NGDG--EFVLTKLQ-----NLKRPVVLTRNKLDNKFKDKLLPLIDK-YAI---L----- 135 (270)
T ss_pred CEEEEEEECCCC---------CchH--HHHHHHHH-----hcCCCEEEEEECeeCCCHHHHHHHHHH-HHh---h-----
Confidence 999999999832 2222 22333332 246899999999999754433322221 111 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAE 625 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~ 625 (654)
..+.++|++||++|. |+++|++.+.+.+....+
T Consensus 136 --------~~~~~v~~iSA~~g~-gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 136 --------EDFKDIVPISALTGD-NTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred --------cCCCceEEEecCCCC-CHHHHHHHHHHhCCCCCC
Confidence 123368999999999 999999999998865544
No 91
>KOG0097|consensus
Probab=99.83 E-value=8.1e-20 Score=158.41 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=133.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+..++|+-|+|||+|+..+....+......++++.+-+..+.+.+.+ +++||||+| ++.|+.-+..|+|+|
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtag-------qerfravtrsyyrga 84 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG-------QERFRAVTRSYYRGA 84 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeeccc-------HHHHHHHHHHHhccc
Confidence 467899999999999999999987766667778888888889888754 789999999 455777788999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
-++++|+|++ .+..+..+..|..+.... ...+..+++++||.||...+++..+..+.+++.
T Consensus 85 agalmvydit---------rrstynhlsswl~dar~l--tnpnt~i~lignkadle~qrdv~yeeak~faee-------- 145 (215)
T KOG0097|consen 85 AGALMVYDIT---------RRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-------- 145 (215)
T ss_pred cceeEEEEeh---------hhhhhhhHHHHHhhhhcc--CCCceEEEEecchhhhhhcccCcHHHHHHHHhh--------
Confidence 9999999999 778888888888765432 345678899999999998888877777777763
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
++.-+++.|||||+ ||++.|-..++.+-+
T Consensus 146 ---------ngl~fle~saktg~-nvedafle~akkiyq 174 (215)
T KOG0097|consen 146 ---------NGLMFLEASAKTGQ-NVEDAFLETAKKIYQ 174 (215)
T ss_pred ---------cCeEEEEecccccC-cHHHHHHHHHHHHHH
Confidence 33448999999999 999999888776543
No 92
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=2.7e-19 Score=170.06 Aligned_cols=165 Identities=26% Similarity=0.451 Sum_probs=112.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc-chhHHHHHHh-hc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHV-ER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~-~~~~~~~~~~-~~ 502 (654)
++|+++|++|+|||||++++++..+.....+++|.+.....+.+++ .++.+|||||+.+...... .+.......+ ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY-LRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc-eEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 3789999999999999999999877666677888888777776665 4899999999864322111 1111222222 24
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|+++. ...+++....|..++... ..+.|+|+|+||+|+.....+.+ . +.+..
T Consensus 80 ~d~~l~v~d~~~~-------~~~~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~-~-~~~~~-------- 139 (168)
T cd01897 80 RAAVLFLFDPSET-------CGYSLEEQLSLFEEIKPL---FKNKPVIVVLNKIDLLTFEDLSE-I-EEEEE-------- 139 (168)
T ss_pred cCcEEEEEeCCcc-------cccchHHHHHHHHHHHhh---cCcCCeEEEEEccccCchhhHHH-H-HHhhh--------
Confidence 6899999999832 111334444555555322 13689999999999976544332 1 11111
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....++|++||++|. |++++|+.+.+.+
T Consensus 140 ---------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 167 (168)
T cd01897 140 ---------LEGEEVLKISTLTEE-GVDEVKNKACELL 167 (168)
T ss_pred ---------hccCceEEEEecccC-CHHHHHHHHHHHh
Confidence 122468999999999 9999999998764
No 93
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=1.1e-19 Score=176.63 Aligned_cols=165 Identities=20% Similarity=0.144 Sum_probs=113.5
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|.+|+|||||++++.+..+.....|+..... ...+.+++. ..+.+|||||+.++.... ..+++.||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~-------~~~~~~a~ 73 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLR-------SLSYADTD 73 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccc-------cccccCCC
Confidence 799999999999999999999766544444443332 334455542 268999999976654322 25788999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHH------HHHhhHh
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRD------TLHNLKD 577 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~------~~~~~~~ 577 (654)
++++|||++ ++.+|+.+. .|..++... ..+.|++||+||+|+.+.+...+.+.. ..++..+
T Consensus 74 ~~ilv~dv~---------~~~sf~~~~~~~~~~i~~~---~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (189)
T cd04134 74 VIMLCFSVD---------SPDSLENVESKWLGEIREH---CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 999999999 778888875 477766533 246899999999999765432211100 0000011
Q ss_pred hhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
... ..+..++|++||++|. ||+++|+.+++.+-
T Consensus 142 ~~~----------~~~~~~~~e~SAk~~~-~v~e~f~~l~~~~~ 174 (189)
T cd04134 142 VAK----------RINALRYLECSAKLNR-GVNEAFTEAARVAL 174 (189)
T ss_pred HHH----------HcCCCEEEEccCCcCC-CHHHHHHHHHHHHh
Confidence 110 0122468999999999 99999999988764
No 94
>PLN03108 Rab family protein; Provisional
Probab=99.83 E-value=2.1e-19 Score=177.60 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=121.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|++|+|||||++++++..+.....++++.++....+.+++.. .+.+|||||..+ +...+..+++.+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~-------~~~~~~~~~~~a 79 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYYRGA 79 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhccC
Confidence 589999999999999999999987766666666666666677776532 578999999543 444556788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|...+.... ..+.|+++|+||+|+.+.+.+..+..+.+..
T Consensus 80 d~~vlv~D~~---------~~~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~--------- 139 (210)
T PLN03108 80 AGALLVYDIT---------RRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK--------- 139 (210)
T ss_pred CEEEEEEECC---------cHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccCCCHHHHHHHHH---------
Confidence 9999999998 6778888888877664332 2468999999999997654443333333322
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+.+++++||++|. ||+++|+.+++.+-
T Consensus 140 --------~~~~~~~e~Sa~~~~-~v~e~f~~l~~~~~ 168 (210)
T PLN03108 140 --------EHGLIFMEASAKTAQ-NVEEAFIKTAAKIY 168 (210)
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 112468999999999 99999999987653
No 95
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=4.8e-19 Score=167.42 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=110.4
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|.+|||||||+++++...+.....++...+.....+.+++. ..+.+|||||..+ +...+..+++.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d 74 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER-------FQTMHASYYHKAH 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHHHhCCCC
Confidence 7999999999999999999987664433333333333334444432 2688999999644 4445567899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++.+++.+..|..++... ..+.|+++|+||+|+... ...+.. .+.+
T Consensus 75 ~~i~v~d~~---------~~~s~~~~~~~~~~i~~~---~~~~p~ivv~nK~Dl~~~--~~~~~~-~~~~---------- 129 (161)
T cd04124 75 ACILVFDVT---------RKITYKNLSKWYEELREY---RPEIPCIVVANKIDLDPS--VTQKKF-NFAE---------- 129 (161)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHh---CCCCcEEEEEECccCchh--HHHHHH-HHHH----------
Confidence 999999998 677888888888777543 236899999999998532 111111 1111
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....++|++||++|. |++++|+.+.+.+
T Consensus 130 -------~~~~~~~~~Sa~~~~-gv~~l~~~l~~~~ 157 (161)
T cd04124 130 -------KHNLPLYYVSAADGT-NVVKLFQDAIKLA 157 (161)
T ss_pred -------HcCCeEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 112468999999999 9999999998755
No 96
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=1.9e-19 Score=171.68 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=114.0
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHV 500 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~ 500 (654)
+..+|+++|.+|||||||++++++..+. ....|+++.++....+.+++. ..+.+|||+|..++.. .+..++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~ 75 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------LNDAEL 75 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------cchhhh
Confidence 3468999999999999999999998765 444555555555556666653 2688999999765432 233678
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+.||++++|+|++ ++.+++.+..|...+. ...+.|+++|+||+|+.+.+.+.....+.+++ ..
T Consensus 76 ~~~d~~llv~d~~---------~~~s~~~~~~~~~~~~----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~- 138 (169)
T cd01892 76 AACDVACLVYDSS---------DPKSFSYCAEVYKKYF----MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCR---KL- 138 (169)
T ss_pred hcCCEEEEEEeCC---------CHHHHHHHHHHHHHhc----cCCCCeEEEEEEcccccccccccccCHHHHHH---Hc-
Confidence 9999999999998 5677777777666542 12368999999999986544321111111211 11
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...+++++||++|. ||+++|+.+++.+
T Consensus 139 ------------~~~~~~~~Sa~~~~-~v~~lf~~l~~~~ 165 (169)
T cd01892 139 ------------GLPPPLHFSSKLGD-SSNELFTKLATAA 165 (169)
T ss_pred ------------CCCCCEEEEeccCc-cHHHHHHHHHHHh
Confidence 11135899999999 9999999998865
No 97
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.82 E-value=1.5e-19 Score=173.14 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=111.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|||||||+.+++...+.....|++ .+.....+.+++. ..+.+|||||+.++. ..+..+++.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQT 73 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcc-eeeeEEEEEECCEEEEEEEEECCCchhhh-------hhhhhhcCCC
Confidence 379999999999999999999876644444433 3333344555542 268899999965543 3334678999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLK 576 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~ 576 (654)
|++++|||++ ++.+|+.+. .|...+... ..+.|+|||+||+|+.+.+...+.+.+. ..+..
T Consensus 74 d~~ilv~d~~---------~~~sf~~~~~~~~~~~~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 74 DVFLICFSLV---------SPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHh---CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 9999999998 778898885 577766543 2468999999999996533211111100 00000
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+.. ...+..++|++||++|+ ||+++|+.+++.
T Consensus 142 ~~~----------~~~~~~~~~e~Sa~~~~-~i~~~f~~l~~~ 173 (174)
T cd01871 142 AMA----------KEIGAVKYLECSALTQK-GLKTVFDEAIRA 173 (174)
T ss_pred HHH----------HHcCCcEEEEecccccC-CHHHHHHHHHHh
Confidence 111 01222468999999999 999999998763
No 98
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.82 E-value=2.1e-19 Score=169.24 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=112.2
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|++|||||||+.+++...+... ++++ .......+.+++.. .+.+|||+|+.. ..+++.+|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~------------~~~~~~~~ 67 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD------------AQFASWVD 67 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCC-ccceEEEEEECCEEEEEEEEECCCCCc------------hhHHhcCC
Confidence 789999999999999999988655332 3333 23334567776632 588999999742 14678999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccC--hHHHHHHHHHHHHhhHhhhccC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG--AQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~--~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
++++|||++ ++.+|+.+..|..++.... ...+.|++||+||+|+.. .+.+..+..+.+++ .
T Consensus 68 ~~ilv~d~~---------~~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~---- 130 (158)
T cd04103 68 AVIFVFSLE---------NEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISESNPRVIDDARARQLCA---D---- 130 (158)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---H----
Confidence 999999999 8899999988988876542 224689999999999853 34444444433332 1
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.+..+|++|||++|. ||+++|+.+++.
T Consensus 131 ---------~~~~~~~e~SAk~~~-~i~~~f~~~~~~ 157 (158)
T cd04103 131 ---------MKRCSYYETCATYGL-NVERVFQEAAQK 157 (158)
T ss_pred ---------hCCCcEEEEecCCCC-CHHHHHHHHHhh
Confidence 112468999999999 999999998864
No 99
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.82 E-value=2.7e-19 Score=180.49 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=118.2
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|..|||||||++++++..+.. .+.+++.++....+.+++. ..+.||||||..++ ......+++.+|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~-------~~~~~~~~~~ad 73 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF-------PAMRRLSILTGD 73 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhh-------hHHHHHHhccCC
Confidence 79999999999999999999876644 3334444666666677653 26789999996543 333445788999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc-------ccCCCCEEEEEeCCCccChHHHH-HHHHHHHHhhH
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-------NLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLK 576 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~-------~~~~~p~iiv~NK~Dl~~~~~v~-~~~~~~~~~~~ 576 (654)
++++|||++ ++++|+.+..|.+++..... ...+.|+|||+||+|+...+++. +++.+.+..
T Consensus 74 ~iIlVfdv~---------~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~-- 142 (247)
T cd04143 74 VFILVFSLD---------NRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG-- 142 (247)
T ss_pred EEEEEEeCC---------CHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh--
Confidence 999999999 78899999999888865321 22468999999999997533322 222211110
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
....+++++||++|. ||+++|+.|+++....
T Consensus 143 ---------------~~~~~~~evSAktg~-gI~elf~~L~~~~~~p 173 (247)
T cd04143 143 ---------------DENCAYFEVSAKKNS-NLDEMFRALFSLAKLP 173 (247)
T ss_pred ---------------cCCCEEEEEeCCCCC-CHHHHHHHHHHHhccc
Confidence 112358999999999 9999999999877543
No 100
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.82 E-value=2.1e-19 Score=175.43 Aligned_cols=154 Identities=22% Similarity=0.151 Sum_probs=114.5
Q ss_pred EcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEE
Q psy1086 430 VGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAM 508 (654)
Q Consensus 430 ~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~il 508 (654)
+|..+||||||+++++...+.....+++..+.....+.+++. ..+.+|||||..+ +...+..+++.||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-------~~~l~~~~~~~ad~~il 73 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-------FGGLRDGYYIQGQCAII 73 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh-------hhhhhHHHhcCCCEEEE
Confidence 599999999999999986654444555555666566666542 3789999999644 44555678999999999
Q ss_pred EEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCc
Q psy1086 509 IVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQP 588 (654)
Q Consensus 509 V~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 588 (654)
|||++ ++.+++.+..|..++.... .+.|+|||+||+|+... .+..+.. .++.
T Consensus 74 V~D~t---------~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~-~v~~~~~-~~~~-------------- 125 (200)
T smart00176 74 MFDVT---------ARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDR-KVKAKSI-TFHR-------------- 125 (200)
T ss_pred EEECC---------ChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc-cCCHHHH-HHHH--------------
Confidence 99999 7889999999999886542 46899999999998542 2221111 1211
Q ss_pred cccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 589 EKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 589 ~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....++|+|||++|+ ||+++|+.+++.+.+
T Consensus 126 ---~~~~~~~e~SAk~~~-~v~~~F~~l~~~i~~ 155 (200)
T smart00176 126 ---KKNLQYYDISAKSNY-NFEKPFLWLARKLIG 155 (200)
T ss_pred ---HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence 112468999999999 999999999987743
No 101
>KOG0081|consensus
Probab=99.82 E-value=5.1e-20 Score=162.99 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=131.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC------c----eEEEEecCCCCCCCccccchhH
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF------R----KMSVADLPGLIEGAHRNLGMGH 494 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~------~----~~~i~DTpG~~~~~~~~~~~~~ 494 (654)
++...+|++|+||||++-++....+...-..++++++..+.+.|+.. + .+++|||+|+++ |+.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER-------FRS 82 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER-------FRS 82 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHH-------HHH
Confidence 35677999999999999999988775555566778888888877521 1 799999999544 566
Q ss_pred HHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHh
Q psy1086 495 QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHN 574 (654)
Q Consensus 495 ~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~ 574 (654)
.+-..+|.|-+++++||++ ++++|-.+..|..+++.+... .++-+|+++||+||++.+.+.+.....+++
T Consensus 83 LTTAFfRDAMGFlLiFDlT---------~eqSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~R~Vs~~qa~~La~ 152 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLT---------SEQSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQRVVSEDQAAALAD 152 (219)
T ss_pred HHHHHHHhhccceEEEecc---------chHHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhhhhhhHHHHHHHHH
Confidence 6668899999999999999 788999999999999876433 467889999999999999888777666655
Q ss_pred hHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 575 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.-+.|||++||-||. ||++..+.+..++-
T Consensus 153 -----------------kyglPYfETSA~tg~-Nv~kave~LldlvM 181 (219)
T KOG0081|consen 153 -----------------KYGLPYFETSACTGT-NVEKAVELLLDLVM 181 (219)
T ss_pred -----------------HhCCCeeeeccccCc-CHHHHHHHHHHHHH
Confidence 224689999999999 99999988876653
No 102
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=1.9e-19 Score=178.53 Aligned_cols=171 Identities=25% Similarity=0.329 Sum_probs=127.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcccccceeEEEEeCCCceEEEEecCCCCCCCc-cccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~-~~~~~~~~~~~~~~~ 502 (654)
-.|+++|.+|+|||||+|.++|....+. +.|.||+....+.++.++ .++.++||||+.+... ....+.......+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-AQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-ceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 3689999999999999999999998874 578899999888888776 4899999999987743 233455677788899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++.. +...+ ..+.+.+. ..+.|.|+++||+|+...+.....+.+.+..
T Consensus 86 vDlilfvvd~~~~---~~~~d-------~~il~~lk-----~~~~pvil~iNKID~~~~~~~l~~~~~~~~~-------- 142 (298)
T COG1159 86 VDLILFVVDADEG---WGPGD-------EFILEQLK-----KTKTPVILVVNKIDKVKPKTVLLKLIAFLKK-------- 142 (298)
T ss_pred CcEEEEEEecccc---CCccH-------HHHHHHHh-----hcCCCeEEEEEccccCCcHHHHHHHHHHHHh--------
Confidence 9999999999842 22111 11222221 1357999999999998776532222222221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHhh
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQ 628 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~~ 628 (654)
...|..+||+||++|. |++.|.+.+.+.+.++.+-+.
T Consensus 143 --------~~~f~~ivpiSA~~g~-n~~~L~~~i~~~Lpeg~~~yp 179 (298)
T COG1159 143 --------LLPFKEIVPISALKGD-NVDTLLEIIKEYLPEGPWYYP 179 (298)
T ss_pred --------hCCcceEEEeeccccC-CHHHHHHHHHHhCCCCCCcCC
Confidence 1345679999999999 999999999999987766543
No 103
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=5.4e-19 Score=167.02 Aligned_cols=159 Identities=20% Similarity=0.185 Sum_probs=119.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|++++|||||++++.+..+.....++++.++....+.+++. ..+.+|||||.. .+......+++.||
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE-------RFRSITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH-------HHHHHHHHHhCCCC
Confidence 7999999999999999999988775556666666666666777653 268899999953 33445557789999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ +..+++.+..|..++..+. ..+.|+++|+||+|+....++..+..+.+..
T Consensus 75 ~~ilv~d~~---------~~~s~~~~~~~l~~~~~~~--~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~---------- 133 (164)
T smart00175 75 GALLVYDIT---------NRESFENLKNWLKELREYA--DPNVVIMLVGNKSDLEDQRQVSREEAEAFAE---------- 133 (164)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcccccCCCHHHHHHHHH----------
Confidence 999999998 6677888888877765543 2479999999999987643322222222211
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+.+++++||++|. |++++|+.|.+.+
T Consensus 134 -------~~~~~~~e~Sa~~~~-~i~~l~~~i~~~~ 161 (164)
T smart00175 134 -------EHGLPFFETSAKTNT-NVEEAFEELAREI 161 (164)
T ss_pred -------HcCCeEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 112358999999999 9999999998865
No 104
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.82 E-value=1.7e-19 Score=198.06 Aligned_cols=151 Identities=25% Similarity=0.267 Sum_probs=99.8
Q ss_pred cEEEEeccCcCCCCCCCCcccccceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeC
Q psy1086 142 DSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 221 (654)
Q Consensus 142 ~~~~~a~Gg~gg~gn~~f~g~~Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~ 221 (654)
+.+.+++|++-.+.|.++...+|+ +|||||+|||||||||++|+| ...|..|.|...
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~------------riGLvG~NGaGKSTLLkilaG-----------~~~~~~G~i~~~ 63 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGE------------RIGLVGRNGAGKSTLLKILAG-----------ELEPDSGEVTRP 63 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCC------------EEEEECCCCCCHHHHHHHHcC-----------CCcCCCCeEeec
Confidence 356778888888887777777776 799999999999999999999 467777877776
Q ss_pred CCccEEEEecCcccccccccc-------cc--hHHHHHHHHH-----------------------------HHHHHHhhc
Q psy1086 222 DFRKMSVADLPGLIEGAHRNL-------GM--GHQFLRHVER-----------------------------TKLIAMIVD 263 (654)
Q Consensus 222 ~~~~~~i~D~PGl~~~~~~~~-------~l--~~~~l~~i~~-----------------------------~~~il~vvd 263 (654)
.. ..+..+++......... +. ..+.++..+. +++.. ++.
T Consensus 64 ~~--~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-~L~ 140 (530)
T COG0488 64 KG--LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE-ALL 140 (530)
T ss_pred CC--ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHH-HHh
Confidence 53 34444443322111000 00 0000100000 11111 111
Q ss_pred ccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHH
Q psy1086 264 VNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~ 323 (654)
. +..... +.++.++|++++.+..++..|+.+|.++++ |++|+....|+.+.+.++
T Consensus 141 g----Lg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~ 199 (530)
T COG0488 141 G----LGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY 199 (530)
T ss_pred c----CCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC
Confidence 1 112222 789999999999999999999999999999 999999888876666543
No 105
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=2.1e-19 Score=174.99 Aligned_cols=156 Identities=14% Similarity=0.071 Sum_probs=106.6
Q ss_pred ceEEEEcCCCCChhhHHH-HHHhcCC----CccC-CCcccc-cceeEE--------EEeCCC-ceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLK-AISRARP----KIAS-YPFTTI-KPNVGV--------ITFDDF-RKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~-~l~~~~~----~~~~-~~~~t~-~~~~~~--------v~~~~~-~~~~i~DTpG~~~~~~~ 488 (654)
.||+++|..+||||||+. ++.+..+ +... .|++.. +..... +.+++. ..+.+|||||+.+..
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~-- 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKD-- 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhh--
Confidence 489999999999999996 5554332 1222 343321 222111 133432 278999999975421
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccCh------
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGA------ 561 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~------ 561 (654)
...+++.||++++|||++ ++.+++.+. .|..++.... .+.|+|||+||+||.+.
T Consensus 81 -------~~~~~~~ad~iilv~d~t---------~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~ 141 (195)
T cd01873 81 -------RRFAYGRSDVVLLCFSIA---------SPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVN 141 (195)
T ss_pred -------hcccCCCCCEEEEEEECC---------ChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhh
Confidence 124789999999999999 788999886 5887775432 36899999999998641
Q ss_pred -------------HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 562 -------------QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 562 -------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+.+..+..+.++. ..+++||+|||++|+ ||+++|+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~V~~~e~~~~a~-----------------~~~~~~~E~SAkt~~-~V~e~F~~~~~~ 194 (195)
T cd01873 142 RARRPLARPIKNADILPPETGRAVAK-----------------ELGIPYYETSVVTQF-GVKDVFDNAIRA 194 (195)
T ss_pred hcccccccccccCCccCHHHHHHHHH-----------------HhCCEEEEcCCCCCC-CHHHHHHHHHHh
Confidence 2333333433432 123468999999999 999999998864
No 106
>PLN03118 Rab family protein; Provisional
Probab=99.81 E-value=7.3e-19 Score=173.92 Aligned_cols=163 Identities=20% Similarity=0.169 Sum_probs=117.5
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..||+++|..|+|||||+++|++..+ ....++++.+.....+.+++. ..+.+|||||+.+ +...+..+++.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~ 85 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER-------FRTLTSSYYRN 85 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHHhc
Confidence 35899999999999999999998765 233455555555555666543 3689999999644 44455678999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHH-HHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLL-LNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~-~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
+|++++|||++ ++++++.+.. |..++..+. ...+.|++||+||+|+...+.+..+....+..
T Consensus 86 ~d~~vlv~D~~---------~~~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~------- 148 (211)
T PLN03118 86 AQGIILVYDVT---------RRETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSREEGMALAK------- 148 (211)
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCHHHHHHHHH-------
Confidence 99999999998 6778888865 555554332 22457999999999997654443222222221
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....++|++||++|. ||+++|+.+.+.+-.
T Consensus 149 ----------~~~~~~~e~SAk~~~-~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 149 ----------EHGCLFLECSAKTRE-NVEQCFEELALKIME 178 (211)
T ss_pred ----------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence 112358999999999 999999999987744
No 107
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.81 E-value=5.8e-19 Score=166.71 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=124.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|+.+||||||++++.+..+.....++...+.....+.+++.. .+.+|||+|..+ +.......++.+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~~~~ 73 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER-------FDSLRDIFYRNSD 73 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG-------GHHHHHHHHTTES
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc-------ccccccccccccc
Confidence 68999999999999999999987665555655567777777776532 689999999543 3334446789999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++++++.+..|.+.+..... .+.|++||+||.|+.+.+++..+..+.++.-
T Consensus 74 ~~ii~fd~~---------~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~--------- 133 (162)
T PF00071_consen 74 AIIIVFDVT---------DEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKE--------- 133 (162)
T ss_dssp EEEEEEETT---------BHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHH---------
T ss_pred ccccccccc---------cccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHH---------
Confidence 999999998 88999999999998876543 3589999999999987555544333333321
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...+++++||+++. ||.++|..+.+.+.
T Consensus 134 --------~~~~~~e~Sa~~~~-~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 134 --------LGVPYFEVSAKNGE-NVKEIFQELIRKIL 161 (162)
T ss_dssp --------TTSEEEEEBTTTTT-THHHHHHHHHHHHH
T ss_pred --------hCCEEEEEECCCCC-CHHHHHHHHHHHHh
Confidence 12579999999999 99999999988764
No 108
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=8.1e-19 Score=166.94 Aligned_cols=160 Identities=15% Similarity=0.154 Sum_probs=119.8
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|++|+|||||++++.+..+.....++++.++....+.+.+. ..+.+|||||+.+ +...+..+++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 79 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER-------FRSITQSYYRS 79 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhcC
Confidence 368999999999999999999976554445555666666667777653 2578999999533 44455578999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ +..+++.+..|..++.... ..+.|.++|+||+|+.+.+++.....+.+.+.
T Consensus 80 ~d~~i~v~d~~---------~~~s~~~~~~~~~~l~~~~--~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~------- 141 (169)
T cd04114 80 ANALILTYDIT---------CEESFRCLPEWLREIEQYA--NNKVITILVGNKIDLAERREVSQQRAEEFSDA------- 141 (169)
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccccCHHHHHHHHHH-------
Confidence 99999999998 6678888888877765432 23689999999999976655544444333321
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
...+++++||++|. |++++|+.|.+.
T Consensus 142 ----------~~~~~~~~Sa~~~~-gv~~l~~~i~~~ 167 (169)
T cd04114 142 ----------QDMYYLETSAKESD-NVEKLFLDLACR 167 (169)
T ss_pred ----------cCCeEEEeeCCCCC-CHHHHHHHHHHH
Confidence 11358999999999 999999999865
No 109
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=3.3e-18 Score=197.63 Aligned_cols=161 Identities=22% Similarity=0.244 Sum_probs=115.4
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCC-ccccchhHHHHHHh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA-HRNLGMGHQFLRHV 500 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~-~~~~~~~~~~~~~~ 500 (654)
...+|+++|.+|||||||+|+|++.... ....|++|.+.......+++ ..+.+|||||+.... .....+...+..++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG-TDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC-EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 3468999999999999999999987653 45689999998888888877 479999999987432 12233556677889
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+.||++++|+|++. ++... -..|.+.+. ..++|+|+|+||+|+...... ..+ +..
T Consensus 353 ~~aD~iL~VvDa~~---~~~~~-------d~~i~~~Lr-----~~~~pvIlV~NK~D~~~~~~~---~~~-~~~------ 407 (712)
T PRK09518 353 SLADAVVFVVDGQV---GLTST-------DERIVRMLR-----RAGKPVVLAVNKIDDQASEYD---AAE-FWK------ 407 (712)
T ss_pred HhCCEEEEEEECCC---CCCHH-------HHHHHHHHH-----hcCCCEEEEEECcccccchhh---HHH-HHH------
Confidence 99999999999973 11111 112333332 247999999999998643211 111 111
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+...|+|||++|. ||++||+.|.+.+.
T Consensus 408 -----------lg~~~~~~iSA~~g~-GI~eLl~~i~~~l~ 436 (712)
T PRK09518 408 -----------LGLGEPYPISAMHGR-GVGDLLDEALDSLK 436 (712)
T ss_pred -----------cCCCCeEEEECCCCC-CchHHHHHHHHhcc
Confidence 011135899999999 99999999988774
No 110
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=4.2e-19 Score=169.85 Aligned_cols=163 Identities=16% Similarity=0.145 Sum_probs=110.1
Q ss_pred EEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 427 v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
|+++|.+|||||||++++.+..+.....+++ .......+.+++.. .+.+|||||+.++.... ..+++.+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDYDRLR-------PLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcE-EeeeeEEEEECCEEEEEEEEECCCCcccchhc-------hhhcCCCCE
Confidence 5789999999999999999977654444433 33334455565532 58999999976554322 356889999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhHhh
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLKDH 578 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~~~ 578 (654)
+++|||++ ++++++.+. .|...+... ..+.|+|||+||+|+.........+.+. ..+..+.
T Consensus 73 ~ilv~d~~---------~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 140 (174)
T smart00174 73 FLICFSVD---------SPASFENVKEKWYPEVKHF---CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred EEEEEECC---------CHHHHHHHHHHHHHHHHhh---CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHH
Confidence 99999998 678888875 477766543 2479999999999997533211111100 0000111
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+. ....+++++||++|. ||+++|+.+.+.+
T Consensus 141 ~~~----------~~~~~~~e~Sa~~~~-~v~~lf~~l~~~~ 171 (174)
T smart00174 141 AKR----------IGAVKYLECSALTQE-GVREVFEEAIRAA 171 (174)
T ss_pred HHH----------cCCcEEEEecCCCCC-CHHHHHHHHHHHh
Confidence 111 122368999999999 9999999998764
No 111
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.81 E-value=8e-19 Score=165.60 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=106.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
||+++|..+||||||++++....+. ...|+++ .....+.+.. ..+.+|||||+.+ +...+..+++.||+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g--~~~~~~~~~~-~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 70 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN-ISFTVWDVGGQDK-------IRPLWRHYFQNTQG 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCC--cceEEEEECC-EEEEEEECCCCHh-------HHHHHHHHhcCCCE
Confidence 7999999999999999999766553 3444433 3334455554 4799999999633 45566688999999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|+|++ ++.+++....+..++... ....+.|++||+||+|+.+... ..++.+.+ .+...
T Consensus 71 ~i~v~D~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~-~~~~~------- 131 (159)
T cd04150 71 LIFVVDSN---------DRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAMS-AAEVTDKL-GLHSL------- 131 (159)
T ss_pred EEEEEeCC---------CHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCCC-HHHHHHHh-Ccccc-------
Confidence 99999998 556666666554444221 1224689999999999865321 11222211 11100
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
..+...++++||++|. ||+++|+.|.+
T Consensus 132 -----~~~~~~~~~~Sak~g~-gv~~~~~~l~~ 158 (159)
T cd04150 132 -----RNRNWYIQATCATSGD-GLYEGLDWLSN 158 (159)
T ss_pred -----CCCCEEEEEeeCCCCC-CHHHHHHHHhc
Confidence 0122357899999999 99999998864
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=1.1e-18 Score=164.43 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=114.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|.+|+|||||++++++..+.....++++.......+.+.+. ..+.+|||||... +...+..+++.+|
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~ 74 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-------YHALGPIYYRDAD 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHH-------HHHhhHHHhccCC
Confidence 7899999999999999999987665544455545555555665542 2688999999543 3334446778999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ +..+++.+..|..++..... .+.|+++|+||+|+...+.+.....+.+..
T Consensus 75 ~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~---------- 133 (162)
T cd04123 75 GAILVYDIT---------DADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLERQRVVSKSEAEEYAK---------- 133 (162)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHH----------
Confidence 999999998 67788888888877765432 268999999999997544332211111111
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+.+++++||++|. |++++|+.+++.+
T Consensus 134 -------~~~~~~~~~s~~~~~-gi~~~~~~l~~~~ 161 (162)
T cd04123 134 -------SVGAKHFETSAKTGK-GIEELFLSLAKRM 161 (162)
T ss_pred -------HcCCEEEEEeCCCCC-CHHHHHHHHHHHh
Confidence 012358999999999 9999999997753
No 113
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=2.6e-19 Score=188.84 Aligned_cols=167 Identities=24% Similarity=0.293 Sum_probs=117.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCC-ccccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA-HRNLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~-~~~~~~~~~~~~~~~~a 503 (654)
+|+++|.+|||||||+|+|++..+.. +..+.+|++...+.+.+++. ++.+|||||+.+.. .....+......+++.|
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~-qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~a 132 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT-QVILYDTPGIFEPKGSLEKAMVRCAWSSLHSA 132 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe-EEEEEECCCcCCCcccHHHHHHHHHHHHhhhC
Confidence 99999999999999999999987654 45678888888888888774 79999999986532 22223444555678999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
|++++|+|++.. ++.. ..|.+.+. ..+.|.|+|+||+|+.+. . ..++.+.+.. .
T Consensus 133 Dvil~VvD~~~s-----------~~~~~~~il~~l~-----~~~~p~IlViNKiDl~~~-~-~~~~~~~l~~---~---- 187 (339)
T PRK15494 133 DLVLLIIDSLKS-----------FDDITHNILDKLR-----SLNIVPIFLLNKIDIESK-Y-LNDIKAFLTE---N---- 187 (339)
T ss_pred CEEEEEEECCCC-----------CCHHHHHHHHHHH-----hcCCCEEEEEEhhcCccc-c-HHHHHHHHHh---c----
Confidence 999999998621 1111 12333332 135688899999998643 1 1222222211 0
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHhh
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQ 628 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~~ 628 (654)
..+.++|++||++|. |+++||+.+.+.+.+..+.+.
T Consensus 188 ---------~~~~~i~~iSAktg~-gv~eL~~~L~~~l~~~~~~~~ 223 (339)
T PRK15494 188 ---------HPDSLLFPISALSGK-NIDGLLEYITSKAKISPWLYA 223 (339)
T ss_pred ---------CCCcEEEEEeccCcc-CHHHHHHHHHHhCCCCCCCCC
Confidence 123468999999999 999999999998877666543
No 114
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.80 E-value=1e-18 Score=173.05 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=112.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|..+||||||++++....+.....|++... ....+.+++. ..+.+|||+|..+ +......+++.+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~-~~~~~~~~~~~v~L~iwDt~G~e~-------~~~l~~~~~~~~ 73 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN-YTASFEIDKRRIELNMWDTSGSSY-------YDNVRPLAYPDS 73 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-eEEEEEECCEEEEEEEEeCCCcHH-------HHHHhHHhccCC
Confidence 379999999999999999999877655555554433 3345666543 2688999999644 333444688999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH------------HHHHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI------------YDGIRD 570 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v------------~~~~~~ 570 (654)
|++++|||++ ++++++.+ ..|..++... ..+.|+|||+||+|+..+... ..+..+
T Consensus 74 d~illvfdis---------~~~Sf~~i~~~w~~~~~~~---~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 74 DAVLICFDIS---------RPETLDSVLKKWQGETQEF---CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhh---CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHH
Confidence 9999999999 77888888 4676655432 246899999999999654221 111222
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.++. . ....+||++||++++.||+++|+......
T Consensus 142 ~~ak---~-------------~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 142 VLAK---Q-------------VGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHHH---H-------------cCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 2221 1 22246999999998823999999988754
No 115
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.80 E-value=1.2e-18 Score=164.61 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=115.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|++++|||||++++++..+.....++++..+....+.+++.. .+.+|||||..+ +......+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 74 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-------YRSLAPMYYRGA 74 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHhccC
Confidence 489999999999999999999987655455555544555566666532 688999999543 333444678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++....|...+.... ..+.|+++|+||+|+...+.+.......+..
T Consensus 75 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--------- 134 (163)
T cd01860 75 AAAIVVYDIT---------SEESFEKAKSWVKELQRNA--SPNIIIALVGNKADLESKRQVSTEEAQEYAD--------- 134 (163)
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccCcCCHHHHHHHHH---------
Confidence 9999999998 6677888888877765432 2568999999999987433222211111111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|. |+.++|+.+.+.+
T Consensus 135 --------~~~~~~~~~Sa~~~~-~v~~l~~~l~~~l 162 (163)
T cd01860 135 --------ENGLLFFETSAKTGE-NVNELFTEIAKKL 162 (163)
T ss_pred --------HcCCEEEEEECCCCC-CHHHHHHHHHHHh
Confidence 112468999999999 9999999998764
No 116
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.80 E-value=1.3e-18 Score=165.57 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=115.4
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
+|+++|.+|+|||||++++.+..+.....+ ++.+.....+.+++. ..+.+|||||+.++ ......+++.++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~ 74 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDP-TIEDSYRKQVEIDGRQCDLEILDTAGTEQF-------TAMRELYIKSGQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCC-cchheEEEEEEECCEEEEEEEEeCCCcccc-------hhhhHHHHhhCC
Confidence 799999999999999999998765433333 333344455566543 26789999996554 334457889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ ++++++.+..|..++.... ...+.|+++|+||+|+...+.+..+....+++ .
T Consensus 75 ~~vlv~~~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~---~------ 135 (168)
T cd04177 75 GFLLVYSVT---------SEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ---Q------ 135 (168)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHH---H------
Confidence 999999998 6788888888888775432 23578999999999987654333222222221 0
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
++..+++++||++|. ||+++|+.+.+.+
T Consensus 136 -------~~~~~~~~~SA~~~~-~i~~~f~~i~~~~ 163 (168)
T cd04177 136 -------WGNVPFYETSARKRT-NVDEVFIDLVRQI 163 (168)
T ss_pred -------cCCceEEEeeCCCCC-CHHHHHHHHHHHH
Confidence 122578999999999 9999999998643
No 117
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=1.1e-18 Score=169.99 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=113.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
||+++|.+|+|||||++++++..+... ..+++...+....+.+++.. .+.+|||||..++. .....+++.+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~ 74 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE-------AMSRIYYRGA 74 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh-------hhhHhhcCCC
Confidence 799999999999999999999776543 33444444445566666532 56799999975432 2233567899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH----HHHHHHHHHHHhhHhhh
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ----EIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~----~v~~~~~~~~~~~~~~~ 579 (654)
|++++|||++ ++.+++.+..|.+++... ..+.|++||+||+|+.... .+.....+.+..
T Consensus 75 d~iilv~d~~---------~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~----- 137 (193)
T cd04118 75 KAAIVCYDLT---------DSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD----- 137 (193)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccccccccCccCHHHHHHHHH-----
Confidence 9999999998 677888888888776543 2368999999999986432 111111111111
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....+++++||++|. ||++||+.+++.+.+
T Consensus 138 ------------~~~~~~~~~Sa~~~~-gv~~l~~~i~~~~~~ 167 (193)
T cd04118 138 ------------EIKAQHFETSSKTGQ-NVDELFQKVAEDFVS 167 (193)
T ss_pred ------------HcCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 112468999999999 999999999987743
No 118
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=9e-19 Score=169.75 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=111.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC-CC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD-DF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~-~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.||+++|.+|+|||||++++.+..+.....+++..+. ...+... +. ..+.+|||||+.+ +......+++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ 72 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENY-VTNIQGPNGKIIELALWDTAGQEE-------YDRLRPLSYPD 72 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeee-EEEEEecCCcEEEEEEEECCCchh-------HHHHHHHhCCC
Confidence 3799999999999999999998766444444333333 3344444 22 2689999999644 33334467899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChH----HHHHHHHHHHHhhHh
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQ----EIYDGIRDTLHNLKD 577 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~----~v~~~~~~~~~~~~~ 577 (654)
||++++|||++ ++.+++.+. .|..++... ..+.|+|||+||+|+.... .+..+..+.+...
T Consensus 73 ad~ii~v~d~~---------~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-- 138 (187)
T cd04132 73 VDVLLICYAVD---------NPTSLDNVEDKWFPEVNHF---CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK-- 138 (187)
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH--
Confidence 99999999998 677888775 466655432 2468999999999986532 1212222222210
Q ss_pred hhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+..++|++||++|. ||+++|+.+.+.+..
T Consensus 139 --------------~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~ 168 (187)
T cd04132 139 --------------QGAFAYLECSAKTME-NVEEVFDTAIEEALK 168 (187)
T ss_pred --------------cCCcEEEEccCCCCC-CHHHHHHHHHHHHHh
Confidence 111268999999999 999999999987753
No 119
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=4e-19 Score=169.16 Aligned_cols=169 Identities=49% Similarity=0.814 Sum_probs=129.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
++|+|||++|||||||+++|++..+.+..+|++|..|..|.+.+.+...+.++||||+.+.......+...+++.+..++
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 57999999999999999999998887888999999999999987764479999999987655544557778888888899
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
++++|+|++.. ..+...+..+.+++..+...+..+|.++|+||+|+.......+.+.......
T Consensus 81 ~vi~v~D~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~--------- 143 (170)
T cd01898 81 LLLHVIDLSGD--------DDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL--------- 143 (170)
T ss_pred EEEEEEecCCC--------CCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---------
Confidence 99999998731 1355666666666666544456789999999999876544433333332211
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
....++++||+++ .+++++++.+.+.
T Consensus 144 --------~~~~~~~~Sa~~~-~gi~~l~~~i~~~ 169 (170)
T cd01898 144 --------WGKPVFPISALTG-EGLDELLRKLAEL 169 (170)
T ss_pred --------CCCCEEEEecCCC-CCHHHHHHHHHhh
Confidence 0125899999999 9999999888654
No 120
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=1.1e-18 Score=190.77 Aligned_cols=183 Identities=21% Similarity=0.249 Sum_probs=134.2
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccch-hHHHHHHh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGM-GHQFLRHV 500 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~-~~~~~~~~ 500 (654)
.+.+|+++|.+|+|||||+|+|++... .....+++|+++....+.+++ ..+.+|||||+.++....+.+ ...++.++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG-IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC-eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 346899999999999999999999775 356789999999999998877 489999999987533222222 13456789
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+.||++++|+|+++ ..+++....|.. ..+.|+++|+||+|+....... .
T Consensus 293 ~~aD~il~VvD~s~---------~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~--------~------ 341 (449)
T PRK05291 293 EEADLVLLVLDASE---------PLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE--------E------ 341 (449)
T ss_pred HhCCEEEEEecCCC---------CCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh--------h------
Confidence 99999999999983 333443333322 2468999999999997543221 0
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH----HHhhHhHHHHHHHHHHHHHHHHhhh
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA----EEEQEMVDRELELVKKLKSSLREHQ 649 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (654)
....+++++||++|+ |+++|++.+.+.+.... ....-...|++..+++..+.|.++.
T Consensus 342 -----------~~~~~~i~iSAktg~-GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~ 402 (449)
T PRK05291 342 -----------ENGKPVIRISAKTGE-GIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERAL 402 (449)
T ss_pred -----------ccCCceEEEEeeCCC-CHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHH
Confidence 012358999999999 99999999999886422 1122245788888888888886543
No 121
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.80 E-value=1e-18 Score=166.41 Aligned_cols=159 Identities=17% Similarity=0.214 Sum_probs=106.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|.+++|||||++++....+ ....|+++.+. ..+.+.. ..+.+|||||+.+ +...+..+++.|
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~--~~~~~~~-~~~~l~Dt~G~~~-------~~~~~~~~~~~a 77 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV--ETVTYKN-VKFNVWDVGGQDK-------IRPLWRHYYTGT 77 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccce--EEEEECC-EEEEEEECCCCHH-------HHHHHHHHhccC
Confidence 35899999999999999999987654 33345444333 3444544 4799999999643 445566789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++....|..++... ....++|++||+||+|+.+.. -.+++.+.+ .+...
T Consensus 78 ~~ii~v~D~t---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~-~~~~~----- 140 (168)
T cd04149 78 QGLIFVVDSA---------DRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAM-KPHEIQEKL-GLTRI----- 140 (168)
T ss_pred CEEEEEEeCC---------chhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCC-CHHHHHHHc-CCCcc-----
Confidence 9999999998 555666665554443211 112468999999999986421 111222111 00000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.....++|++||++|+ ||+++|+.|.+
T Consensus 141 -------~~~~~~~~~~SAk~g~-gv~~~~~~l~~ 167 (168)
T cd04149 141 -------RDRNWYVQPSCATSGD-GLYEGLTWLSS 167 (168)
T ss_pred -------CCCcEEEEEeeCCCCC-ChHHHHHHHhc
Confidence 0112358999999999 99999998864
No 122
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.80 E-value=2.1e-18 Score=162.68 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=114.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|.+|+|||||++++.+..+.....+..+.+.....+.+++. ..+.+|||||+.++ ......+++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-------RTLTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-------hhhhHHHhCCCC
Confidence 7899999999999999999987665545565555555555555542 36899999996443 333346788999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ +..+++.+..|..++..+. ...+.|+++|+||+|+.......++..+ +..
T Consensus 75 ~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~~---------- 133 (161)
T cd01863 75 GVILVYDVT---------RRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKENREVTREEGLK-FAR---------- 133 (161)
T ss_pred EEEEEEECC---------CHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCcccccccCHHHHHH-HHH----------
Confidence 999999998 6778888888887776543 2357899999999999733221121111 111
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
....+++++||++|+ |++++|+.+.+.
T Consensus 134 -------~~~~~~~~~Sa~~~~-gi~~~~~~~~~~ 160 (161)
T cd01863 134 -------KHNMLFIETSAKTRD-GVQQAFEELVEK 160 (161)
T ss_pred -------HcCCEEEEEecCCCC-CHHHHHHHHHHh
Confidence 112468999999999 999999988764
No 123
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=2.1e-18 Score=169.64 Aligned_cols=161 Identities=25% Similarity=0.357 Sum_probs=116.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc-chhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~-~~~~~~~~~~~~a 503 (654)
.+|+++|++|||||||++++++........++.|.++....+.+++...+.+|||||+.+...... ........++..+
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 121 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEA 121 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999987666667777888888888777644799999999865422111 1112234567899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++....|...+... ...++|+++|+||+|+....... + ...
T Consensus 122 d~ii~v~D~~---------~~~~~~~~~~~~~~l~~~--~~~~~~viiV~NK~Dl~~~~~~~----~-~~~--------- 176 (204)
T cd01878 122 DLLLHVVDAS---------DPDYEEQIETVEKVLKEL--GAEDIPMILVLNKIDLLDDEELE----E-RLE--------- 176 (204)
T ss_pred CeEEEEEECC---------CCChhhHHHHHHHHHHHc--CcCCCCEEEEEEccccCChHHHH----H-Hhh---------
Confidence 9999999998 444555555555555432 22468999999999997654322 0 100
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
..+.+++++||++|. |++++++.|.+.
T Consensus 177 --------~~~~~~~~~Sa~~~~-gi~~l~~~L~~~ 203 (204)
T cd01878 177 --------AGRPDAVFISAKTGE-GLDELLEAIEEL 203 (204)
T ss_pred --------cCCCceEEEEcCCCC-CHHHHHHHHHhh
Confidence 123468999999999 999999998764
No 124
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=2.7e-18 Score=165.97 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=111.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC--CceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD--FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~--~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|||||||+++++...+. ...|+++.+.....+.+.+ ...+.+|||||+. .+...+..+++.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------~~~~~~~~~~~~ 75 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE-------KLRPLWKSYTRC 75 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcH-------hHHHHHHHHhcc
Confidence 58999999999999999999886553 3355444444444444322 2479999999953 345556678899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
||++++|+|++ +..+++.+..|..++.... ...+.|++||+||+|+.+.... +++.+ +..+.+..
T Consensus 76 ~d~ii~v~D~~---------~~~~~~~~~~~~~~i~~~~-~~~~~p~iiv~NK~D~~~~~~~-~~~~~-~~~~~~~~--- 140 (183)
T cd04152 76 TDGIVFVVDSV---------DVERMEEAKTELHKITRFS-ENQGVPVLVLANKQDLPNALSV-SEVEK-LLALHELS--- 140 (183)
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHhhh-hcCCCcEEEEEECcCccccCCH-HHHHH-HhCccccC---
Confidence 99999999998 4556666666655554322 2246899999999998643111 11111 11111100
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.....+++++||++|+ ||+++|+.|.+.+.
T Consensus 141 --------~~~~~~~~~~SA~~~~-gi~~l~~~l~~~l~ 170 (183)
T cd04152 141 --------ASTPWHVQPACAIIGE-GLQEGLEKLYEMIL 170 (183)
T ss_pred --------CCCceEEEEeecccCC-CHHHHHHHHHHHHH
Confidence 0112458999999999 99999999987774
No 125
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=2.4e-18 Score=163.48 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=107.1
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC-CceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~-~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|..|+|||||++++.+..+.. ..+.++ ........+++ ..++.+|||||..+ ....+..+++.+|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ad 72 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE-NVPRVL-PEITIPADVTPERVPTTIVDTSSRPQ-------DRANLAAEIRKAN 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-cCCCcc-cceEeeeeecCCeEEEEEEeCCCchh-------hhHHHhhhcccCC
Confidence 79999999999999999999876532 233322 22222223332 23789999999643 2334456789999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
++++|||++ ++.+++.+. .|...+.... .+.|+++|+||+|+.+..... ...+....+.+..
T Consensus 73 ~~ilv~d~~---------~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~---- 135 (166)
T cd01893 73 VICLVYSVD---------RPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQA-GLEEEMLPIMNEF---- 135 (166)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchh-HHHHHHHHHHHHH----
Confidence 999999998 677888764 5766664332 368999999999997654321 0111111111111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|. |++++|+.+.+.+
T Consensus 136 --------~~~~~~~e~Sa~~~~-~v~~lf~~~~~~~ 163 (166)
T cd01893 136 --------REIETCVECSAKTLI-NVSEVFYYAQKAV 163 (166)
T ss_pred --------hcccEEEEecccccc-CHHHHHHHHHHHh
Confidence 011258999999999 9999999988754
No 126
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.79 E-value=3.5e-18 Score=162.90 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=116.5
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|++++|||||++++.+..+.....++.+.++....+.+++.. .+.+|||||+.. +...+..+++.||
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER-------FQSLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHhHHHHHhcCCC
Confidence 79999999999999999999987655445555556666666676532 467999999533 3444567889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccChHHH-HHHHHHHHHhhHhhhcc
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~~ 581 (654)
++++|||++ +..+++.+..|..++..... ...+.|+++|+||+|+...+.+ .++.......
T Consensus 75 ~~i~v~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------- 138 (172)
T cd01862 75 CCVLVYDVT---------NPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS------- 138 (172)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH-------
Confidence 999999998 56677888778776543221 1236899999999999743222 2222211111
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....++|++||++|. |++++|+.+.+.+-+
T Consensus 139 ----------~~~~~~~~~Sa~~~~-gv~~l~~~i~~~~~~ 168 (172)
T cd01862 139 ----------NGNIPYFETSAKEAI-NVEQAFETIARKALE 168 (172)
T ss_pred ----------cCCceEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence 122468999999999 999999999876543
No 127
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.79 E-value=3.2e-18 Score=161.59 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=113.1
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|.+|+|||||+++++...+.. .+.+++.+.......+++. ..+.+|||||+.+ +......+++.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE-DYEPTKADSYRKKVVLDGEDVQLNILDTAGQED-------YAAIRDNYHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc-ccCCcchhhEEEEEEECCEEEEEEEEECCChhh-------hhHHHHHHhhcCC
Confidence 79999999999999999999865543 3344444444455555542 2689999999654 3344457889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ +..+++.+..|...+..... ..+.|+++|+||+|+...+.........+.+ .
T Consensus 74 ~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~---~------ 134 (164)
T cd04139 74 GFLLVFSIT---------DMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLAR---Q------ 134 (164)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHH---H------
Confidence 999999998 56778888877776654322 3579999999999997632222111111111 0
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...+++++||++|+ |++++|+.+.+.+.
T Consensus 135 --------~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 162 (164)
T cd04139 135 --------WGVPYVETSAKTRQ-NVEKAFYDLVREIR 162 (164)
T ss_pred --------hCCeEEEeeCCCCC-CHHHHHHHHHHHHH
Confidence 12368999999999 99999999987654
No 128
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=1.9e-18 Score=186.70 Aligned_cols=164 Identities=26% Similarity=0.316 Sum_probs=120.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc-chhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~-~~~~~~~~~~~~a 503 (654)
++|+++|.+|+|||||+|+|++..+...+.+++|+++....+.+.+...+.+|||||+.+..+... .....++.+++.|
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999988877788999999999888887655789999999865422111 1234466788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|.+.+.... ..++|+++|+||+|+.+.... .+. ...
T Consensus 278 DlIL~VvDaS---------~~~~~e~l~~v~~iL~el~--~~~~pvIiV~NKiDL~~~~~~--~~~--~~~--------- 333 (426)
T PRK11058 278 TLLLHVVDAA---------DVRVQENIEAVNTVLEEID--AHEIPTLLVMNKIDMLDDFEP--RID--RDE--------- 333 (426)
T ss_pred CEEEEEEeCC---------CccHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccCCCchhH--HHH--HHh---------
Confidence 9999999998 4455566655555554332 236899999999998753210 011 000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.....++++||++|. ||++|++.|.+.+.
T Consensus 334 --------~~~~~~v~ISAktG~-GIdeL~e~I~~~l~ 362 (426)
T PRK11058 334 --------ENKPIRVWLSAQTGA-GIPLLFQALTERLS 362 (426)
T ss_pred --------cCCCceEEEeCCCCC-CHHHHHHHHHHHhh
Confidence 000125889999999 99999999998774
No 129
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.79 E-value=1.7e-18 Score=165.61 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=109.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
|++++|.+|+|||||++++.+..+ ...+++++.+.....+.+++. ..+.+|||||+.++.... ..+++.+|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~a~ 73 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR-------PLCYPDTD 73 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccc-------ccccCCCc
Confidence 789999999999999999988655 334444555555556666652 367899999976554332 25788999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHH------------HHHHHHHH
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQE------------IYDGIRDT 571 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~------------v~~~~~~~ 571 (654)
++++|||++ ++.+++.+. .|...+... ..+.|+++|+||+|+..... +..+....
T Consensus 74 ~~i~v~d~~---------~~~sf~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 74 VFLLCFSVV---------NPSSFQNISEKWIPEIRKH---NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH
Confidence 999999998 777888764 576666532 23689999999999864321 11111111
Q ss_pred HHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 572 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
+++ . .+..+++++||++|. ||+++|+.+.-
T Consensus 142 ~a~------~----------~~~~~~~e~Sa~~~~-~v~~lf~~~~~ 171 (173)
T cd04130 142 LAE------K----------IGACEYIECSALTQK-NLKEVFDTAIL 171 (173)
T ss_pred HHH------H----------hCCCeEEEEeCCCCC-CHHHHHHHHHh
Confidence 211 0 122368999999999 99999998753
No 130
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.79 E-value=2.6e-18 Score=164.83 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=107.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.||+++|.+++|||||++++....+ ....|+++.+. ..+.+.+ ..+.+|||||+.+ +...+..+++.||
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~t~~~~~--~~~~~~~-~~l~l~D~~G~~~-------~~~~~~~~~~~ad 82 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-VTTIPTIGFNV--ETVTYKN-ISFTVWDVGGQDK-------IRPLWRHYYTNTQ 82 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCcCCccccce--EEEEECC-EEEEEEECCCChh-------hHHHHHHHhCCCC
Confidence 5899999999999999999976544 33344443333 3445554 4799999999533 4556678899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ ++.+++....|...+... ....+.|++||+||+|+.+... ..++.+.+. +...
T Consensus 83 ~ii~v~D~t---------~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~-~~~~------ 144 (175)
T smart00177 83 GLIFVVDSN---------DRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMK-AAEITEKLG-LHSI------ 144 (175)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCC-HHHHHHHhC-cccc------
Confidence 999999998 566676666555544221 1124689999999999875421 111211111 0000
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
......++++||++|+ ||+++|+.|.+.+
T Consensus 145 ------~~~~~~~~~~Sa~~g~-gv~e~~~~l~~~~ 173 (175)
T smart00177 145 ------RDRNWYIQPTCATSGD-GLYEGLTWLSNNL 173 (175)
T ss_pred ------CCCcEEEEEeeCCCCC-CHHHHHHHHHHHh
Confidence 0112347789999999 9999999987654
No 131
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.78 E-value=3.8e-18 Score=162.65 Aligned_cols=160 Identities=20% Similarity=0.239 Sum_probs=108.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
||+++|.++||||||++++.+..+ ....| |.......+.+.+ .++.+|||||+.+ +...+..+++.+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~~~~--T~~~~~~~~~~~~-~~i~l~Dt~G~~~-------~~~~~~~~~~~ad~ 69 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-MQPIP--TIGFNVETVEYKN-LKFTIWDVGGKHK-------LRPLWKHYYLNTQA 69 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-CCcCC--cCceeEEEEEECC-EEEEEEECCCChh-------cchHHHHHhccCCE
Confidence 588999999999999999998743 23333 3444444566655 4799999999643 34456678899999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|+|++ ++.+++.+..|..++... ....+.|++||+||+|+.+... .+++.+.+ ...+ .+.
T Consensus 70 ii~V~D~s---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~-~~~~---~~~-- 132 (169)
T cd04158 70 VVFVVDSS---------HRDRVSEAHSELAKLLTE-KELRDALLLIFANKQDVAGALS-VEEMTELL-SLHK---LCC-- 132 (169)
T ss_pred EEEEEeCC---------cHHHHHHHHHHHHHHhcC-hhhCCCCEEEEEeCcCcccCCC-HHHHHHHh-CCcc---ccC--
Confidence 99999998 566777776666655322 1223589999999999864311 11111111 1100 000
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.....++++||++|. ||+++|+.+.+.+
T Consensus 133 ------~~~~~~~~~Sa~~g~-gv~~~f~~l~~~~ 160 (169)
T cd04158 133 ------GRSWYIQGCDARSGM-GLYEGLDWLSRQL 160 (169)
T ss_pred ------CCcEEEEeCcCCCCC-CHHHHHHHHHHHH
Confidence 011247899999999 9999999987654
No 132
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.78 E-value=3.5e-18 Score=163.40 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=109.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|++|+|||||++++.+..+.....+ +..+.....+.+++.. .+.+|||||..++..... .+++.+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~~~~ 73 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVP-TVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LSYPMTD 73 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCccccccccc-------ccCCCCC
Confidence 799999999999999999998766433333 3333444455565531 477999999766543332 5678999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhHh
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLKD 577 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~~ 577 (654)
++++|||++ ++.+++.+. .|..++... ..+.|++||+||+|+.+.......+... .++..+
T Consensus 74 ~~ilv~~~~---------~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 74 VFLICFSVV---------NPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 999999998 677888775 566666433 3579999999999986543211111000 000000
Q ss_pred hhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.. ......++|++||++|. ||+++|+.+++.+
T Consensus 142 ~~----------~~~~~~~~~e~Sa~~~~-gi~~~f~~~~~~~ 173 (174)
T cd04135 142 LA----------KEIGAHCYVECSALTQK-GLKTVFDEAILAI 173 (174)
T ss_pred HH----------HHcCCCEEEEecCCcCC-CHHHHHHHHHHHh
Confidence 00 01222368999999999 9999999998753
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.78 E-value=4.5e-18 Score=160.57 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=102.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCC---ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPK---IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~---~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.|+++|++|+|||||+++|++.... ....+++|.+.....+.+.+...+.+|||||+.+ +...+..+++.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhhhc
Confidence 4789999999999999999974321 1224566777766667766235899999999633 44555677889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH---HHHHHHHHHhhHhhh
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHI 579 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v---~~~~~~~~~~~~~~~ 579 (654)
||++++|+|+++. . ..++.+.+. .+... ...|+++|+||+|+.+.... ..++.+.++.
T Consensus 75 ad~ii~V~d~~~~---~---~~~~~~~~~----~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----- 135 (164)
T cd04171 75 IDLVLLVVAADEG---I---MPQTREHLE----ILELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAG----- 135 (164)
T ss_pred CCEEEEEEECCCC---c---cHhHHHHHH----HHHHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHh-----
Confidence 9999999999731 0 122222221 11111 12499999999999765321 2222222211
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
. .....+++++||++|. ||+++|+.+.+
T Consensus 136 --~--------~~~~~~~~~~Sa~~~~-~v~~l~~~l~~ 163 (164)
T cd04171 136 --T--------FLADAPIFPVSAVTGE-GIEELKEYLDE 163 (164)
T ss_pred --c--------CcCCCcEEEEeCCCCc-CHHHHHHHHhh
Confidence 0 0123579999999999 99999998865
No 134
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.78 E-value=3.9e-18 Score=185.27 Aligned_cols=186 Identities=19% Similarity=0.234 Sum_probs=133.7
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchh-HHHHHH
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLRH 499 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~-~~~~~~ 499 (654)
+.+.+|+++|.+|+|||||+|+|++... .++..|++|+++....+.+++ ..+.+|||||+.+.....+... .....+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g-~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG-ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC-EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4557999999999999999999999765 456789999999999999987 4799999999876543222222 335578
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhh
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 579 (654)
++.||++++|+|++ +..+++.. |..++. ..+.|+|+|+||+|+... +. . .+..
T Consensus 280 ~~~aD~il~V~D~s---------~~~s~~~~--~l~~~~-----~~~~piIlV~NK~Dl~~~-~~----~-~~~~----- 332 (442)
T TIGR00450 280 IKQADLVIYVLDAS---------QPLTKDDF--LIIDLN-----KSKKPFILVLNKIDLKIN-SL----E-FFVS----- 332 (442)
T ss_pred HhhCCEEEEEEECC---------CCCChhHH--HHHHHh-----hCCCCEEEEEECccCCCc-ch----h-hhhh-----
Confidence 89999999999998 33344443 433332 236899999999998643 11 1 1111
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHH-------hhHhHHHHHHHHHHHHHHHHhhh
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEE-------EQEMVDRELELVKKLKSSLREHQ 649 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 649 (654)
..+.+++++||++ . ||+++|+.+.+.+.+.... ..-.-.||++.+++..+.|.++.
T Consensus 333 ------------~~~~~~~~vSak~-~-gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~ 395 (442)
T TIGR00450 333 ------------SKVLNSSNLSAKQ-L-KIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFL 395 (442)
T ss_pred ------------hcCCceEEEEEec-C-CHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHH
Confidence 1123578999998 5 9999999999887654221 11134788899999988886553
No 135
>KOG0395|consensus
Probab=99.78 E-value=3.2e-18 Score=165.86 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=131.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|..|+|||+|+.+++...+... +.++..+.....+.+++.. .+.|+||+|+.+ +..+-..|++.+
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~-------~~~~~~~~~~~~ 75 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTIEDSYRKELTVDGEVCMLEILDTAGQEE-------FSAMRDLYIRNG 75 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccccc-cCCCccccceEEEEECCEEEEEEEEcCCCccc-------ChHHHHHhhccC
Confidence 4899999999999999999999765444 5555557888888887543 688999999544 444445889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++||+++ ++.||+.+..+.+.+ .........|+|+|+||+|+...+++..+..+.++.
T Consensus 76 ~gF~lVysit---------d~~SF~~~~~l~~~I-~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~--------- 136 (196)
T KOG0395|consen 76 DGFLLVYSIT---------DRSSFEEAKQLREQI-LRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR--------- 136 (196)
T ss_pred cEEEEEEECC---------CHHHHHHHHHHHHHH-HHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH---------
Confidence 9999999999 899999999998888 333344568999999999999888887777666643
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.+.++++++||+.+. ||+++|..+.+.++..
T Consensus 137 --------~~~~~f~E~Sak~~~-~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 137 --------SWGCAFIETSAKLNY-NVDEVFYELVREIRLP 167 (196)
T ss_pred --------hcCCcEEEeeccCCc-CHHHHHHHHHHHHHhh
Confidence 233568999999997 9999999999988763
No 136
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=2.7e-18 Score=180.08 Aligned_cols=189 Identities=21% Similarity=0.268 Sum_probs=143.5
Q ss_pred ecccceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchh-HHHHH
Q psy1086 421 LKLIADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLR 498 (654)
Q Consensus 421 ~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~-~~~~~ 498 (654)
++.|.+++++|.||+|||||+|.|++.+..+ ++.||||+|.....+.++|. .+.++||||+.+.....+..+ ...+.
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~-pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI-PVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCE-EEEEEecCCcccCccHHHHHHHHHHHH
Confidence 4567899999999999999999999998876 56899999999999999985 899999999998766655554 45568
Q ss_pred HhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhh
Q psy1086 499 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 499 ~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 578 (654)
.+..||.+++|+|++.+ +.+++...+ . ....++|+++|.||.|+......... + .
T Consensus 293 ~i~~ADlvL~v~D~~~~---~~~~d~~~~-------~------~~~~~~~~i~v~NK~DL~~~~~~~~~------~---~ 347 (454)
T COG0486 293 AIEEADLVLFVLDASQP---LDKEDLALI-------E------LLPKKKPIIVVLNKADLVSKIELESE------K---L 347 (454)
T ss_pred HHHhCCEEEEEEeCCCC---CchhhHHHH-------H------hcccCCCEEEEEechhcccccccchh------h---c
Confidence 88999999999999842 111111111 1 12357899999999999865431111 0 0
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH-HH--HhhHhHHHHHHHHHHHHHHHHhhh
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL-AE--EEQEMVDRELELVKKLKSSLREHQ 649 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~ 649 (654)
....+++.+||+||+ |+++|.+.|.+.+... .. ..-..-.||.+..+++.+.+..+.
T Consensus 348 -------------~~~~~~i~iSa~t~~-Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~ 407 (454)
T COG0486 348 -------------ANGDAIISISAKTGE-GLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDAL 407 (454)
T ss_pred -------------cCCCceEEEEecCcc-CHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHH
Confidence 112258999999999 9999999999988765 22 123345899999999998886654
No 137
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=4e-18 Score=160.77 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=104.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
+|+++|.++||||||++++.+...+.. ..|+++ .....+.+.+ ..+.+|||||.. .+...+..+++.+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--~~~~~~~~~~-~~~~l~Dt~G~~-------~~~~~~~~~~~~~d 70 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--FNVESFEKGN-LSFTAFDMSGQG-------KYRGLWEHYYKNIQ 70 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--cceEEEEECC-EEEEEEECCCCH-------hhHHHHHHHHccCC
Confidence 478999999999999999998754332 233333 3333344444 479999999954 34455667899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhh-cccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK-MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
++++|+|++ ++.+++....|...+.... ....+.|++||+||+|+.+... ..++.+.+. +...
T Consensus 71 ~ii~v~D~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~-~~~~----- 134 (162)
T cd04157 71 GIIFVIDSS---------DRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLG-LENI----- 134 (162)
T ss_pred EEEEEEeCC---------cHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhC-Cccc-----
Confidence 999999998 5556665555555443211 1124789999999999875421 111111111 0000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.....++|++||++|. ||+++|+.|..
T Consensus 135 -------~~~~~~~~~~Sa~~g~-gv~~~~~~l~~ 161 (162)
T cd04157 135 -------KDKPWHIFASNALTGE-GLDEGVQWLQA 161 (162)
T ss_pred -------cCceEEEEEeeCCCCC-chHHHHHHHhc
Confidence 0011258999999999 99999998864
No 138
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=5e-18 Score=162.46 Aligned_cols=158 Identities=23% Similarity=0.242 Sum_probs=108.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|++|+|||||++++.+..+ ....++ .......+.+++ ..+.+|||||+.+ +...+..+++.+|
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t--~g~~~~~~~~~~-~~l~l~D~~G~~~-------~~~~~~~~~~~~d 83 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI-DTISPT--LGFQIKTLEYEG-YKLNIWDVGGQKT-------LRPYWRNYFESTD 83 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC-CCcCCc--cccceEEEEECC-EEEEEEECCCCHH-------HHHHHHHHhCCCC
Confidence 5899999999999999999998633 222332 334445566664 5799999999543 4455667899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ ++.+++....|...+... ....+.|++||+||+|+.+... .+++.+.++. ..
T Consensus 84 ~~i~v~d~~---------~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~----~~---- 144 (173)
T cd04154 84 ALIWVVDSS---------DRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGALS-EEEIREALEL----DK---- 144 (173)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCCC-HHHHHHHhCc----cc----
Confidence 999999998 556676666555544321 1235799999999999875321 1122211110 00
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
......++|++||++|+ ||+++|+.+.+
T Consensus 145 -----~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~ 172 (173)
T cd04154 145 -----ISSHHWRIQPCSAVTGE-GLLQGIDWLVD 172 (173)
T ss_pred -----cCCCceEEEeccCCCCc-CHHHHHHHHhc
Confidence 00123479999999999 99999998763
No 139
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=5.4e-18 Score=163.62 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=108.6
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..||+++|.++||||||++++....+. ...|++ ......+...+ ..+.+|||||+. .+...+..+++.|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~T~--~~~~~~~~~~~-~~~~l~D~~G~~-------~~~~~~~~~~~~a 85 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIPTI--GFNVETVEYKN-LKFTMWDVGGQD-------KLRPLWRHYYQNT 85 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCcc--ccceEEEEECC-EEEEEEECCCCH-------hHHHHHHHHhcCC
Confidence 358999999999999999999765443 333433 33334555554 479999999953 3555667889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ ++.+++....+..++... ....++|++||+||.|+.+.... .++.+.+. +. .+
T Consensus 86 d~iI~v~D~t---------~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~~-~~i~~~l~-~~-~~---- 148 (182)
T PTZ00133 86 NGLIFVVDSN---------DRERIGDAREELERMLSE-DELRDAVLLVFANKQDLPNAMST-TEVTEKLG-LH-SV---- 148 (182)
T ss_pred CEEEEEEeCC---------CHHHHHHHHHHHHHHHhC-HhhcCCCEEEEEeCCCCCCCCCH-HHHHHHhC-CC-cc----
Confidence 9999999998 556666655444333211 11246899999999998653211 11221111 00 00
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
......++++||++|+ ||+++|+.|.+.+.+
T Consensus 149 -------~~~~~~~~~~Sa~tg~-gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 149 -------RQRNWYIQGCCATTAQ-GLYEGLDWLSANIKK 179 (182)
T ss_pred -------cCCcEEEEeeeCCCCC-CHHHHHHHHHHHHHH
Confidence 0112346799999999 999999999887654
No 140
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.78 E-value=3.2e-18 Score=162.34 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=106.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
.|+++|.+|||||||++++.+..+.....|+++. ....+...+ .++.+|||||..+ +...+..+++.||+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~--~~~~i~~~~-~~l~i~Dt~G~~~-------~~~~~~~~~~~ad~ 70 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF--NSVAIPTQD-AIMELLEIGGSQN-------LRKYWKRYLSGSQG 70 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCc--ceEEEeeCC-eEEEEEECCCCcc-------hhHHHHHHHhhCCE
Confidence 3789999999999999999987654444444433 233444444 4799999999543 45566688999999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|||++ ++.+++....|..++.. ...++|+++|+||+|+...+.+.. +.+.+ .+.+...
T Consensus 71 ii~V~D~t---------~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~~~~~~-i~~~~-~~~~~~~----- 131 (164)
T cd04162 71 LIFVVDSA---------DSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAARSVQE-IHKEL-ELEPIAR----- 131 (164)
T ss_pred EEEEEECC---------CHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCCCCHHH-HHHHh-CChhhcC-----
Confidence 99999998 55566666666555432 125799999999999976543221 11111 1111111
Q ss_pred CCccccccccceEEEeeec------CCCChHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKT------NSTDVNDAKLKIR 617 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAkt------g~~gv~el~~~i~ 617 (654)
....++|++||++ ++ ||+++|+.+.
T Consensus 132 ------~~~~~~~~~Sa~~~~s~~~~~-~v~~~~~~~~ 162 (164)
T cd04162 132 ------GRRWILQGTSLDDDGSPSRME-AVKDLLSQLI 162 (164)
T ss_pred ------CCceEEEEeeecCCCChhHHH-HHHHHHHHHh
Confidence 1234578899988 98 9999999775
No 141
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=6.5e-18 Score=162.86 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=107.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|..+||||||++++....+. ...|+++ .....+.+.+ ..+.+|||||+ +.+...+..+++.||
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g--~~~~~~~~~~-~~~~i~D~~Gq-------~~~~~~~~~~~~~a~ 86 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN-ISFTVWDVGGQ-------DKIRPLWRHYFQNTQ 86 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc-cccCCcc--eeEEEEEECC-EEEEEEECCCC-------HHHHHHHHHHhccCC
Confidence 58999999999999999999875543 3344443 3334455655 47999999995 345666778899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ ++++++....+...+.. .....+.|++||+||+|+.+.... +++.+.+. +...
T Consensus 87 ~iI~V~D~s---------~~~s~~~~~~~l~~~l~-~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~l~-l~~~------ 148 (181)
T PLN00223 87 GLIFVVDSN---------DRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMNA-AEITDKLG-LHSL------ 148 (181)
T ss_pred EEEEEEeCC---------cHHHHHHHHHHHHHHhc-CHhhCCCCEEEEEECCCCCCCCCH-HHHHHHhC-cccc------
Confidence 999999998 55556555443333311 112246899999999998754321 11111110 0000
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+...++++||++|+ ||+++|+.|++.+.
T Consensus 149 ------~~~~~~~~~~Sa~~g~-gv~e~~~~l~~~~~ 178 (181)
T PLN00223 149 ------RQRHWYIQSTCATSGE-GLYEGLDWLSNNIA 178 (181)
T ss_pred ------CCCceEEEeccCCCCC-CHHHHHHHHHHHHh
Confidence 0111236789999999 99999999987654
No 142
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=3.6e-18 Score=160.91 Aligned_cols=159 Identities=25% Similarity=0.291 Sum_probs=105.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
+|+++|.+|+|||||++++.+..+.. ..|++. .....+..+....+.+|||||+. .+...+..+++.+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~--~~~~~~~~~~~~~l~i~D~~G~~-------~~~~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVG--FNVEMLQLEKHLSLTVWDVGGQE-------KMRTVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccC--cceEEEEeCCceEEEEEECCCCH-------hHHHHHHHHhccCCE
Confidence 58899999999999999999876542 334332 33344555444579999999954 344556678999999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|+|++ +..+++.+..|..++... ....+.|+++|+||+|+..... .+++...+. +.+
T Consensus 71 iv~v~D~~---------~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~-~~~-------- 130 (160)
T cd04156 71 LVYVVDSS---------DEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALT-AEEITRRFK-LKK-------- 130 (160)
T ss_pred EEEEEECC---------cHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcC-HHHHHHHcC-Ccc--------
Confidence 99999998 444555555554444221 1224789999999999864211 111111110 011
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
+ ......+++++||++|+ ||+++|+.|.+
T Consensus 131 ~---~~~~~~~~~~~Sa~~~~-gv~~~~~~i~~ 159 (160)
T cd04156 131 Y---CSDRDWYVQPCSAVTGE-GLAEAFRKLAS 159 (160)
T ss_pred c---CCCCcEEEEecccccCC-ChHHHHHHHhc
Confidence 1 00123468999999999 99999999864
No 143
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=1.7e-18 Score=181.02 Aligned_cols=159 Identities=27% Similarity=0.351 Sum_probs=125.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCC--ccccchhHHHHHHhh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA--HRNLGMGHQFLRHVE 501 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~--~~~~~~~~~~~~~~~ 501 (654)
+.|+++|.+|||||||+|+|++.+..+ ++.||+|+|...+...|.+. .+.++||+|+.... .....+..+++..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~-~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR-EFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc-eEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 579999999999999999999998876 57999999999999999985 79999999998655 455568889999999
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.||++++|+|+. .|+++.|.... +.|. ..++|+|+|+||+|-.+.... ..++..
T Consensus 83 eADvilfvVD~~---~Git~~D~~ia-------~~Lr-----~~~kpviLvvNK~D~~~~e~~-------~~efys---- 136 (444)
T COG1160 83 EADVILFVVDGR---EGITPADEEIA-------KILR-----RSKKPVILVVNKIDNLKAEEL-------AYEFYS---- 136 (444)
T ss_pred hCCEEEEEEeCC---CCCCHHHHHHH-------HHHH-----hcCCCEEEEEEcccCchhhhh-------HHHHHh----
Confidence 999999999998 45555543322 2221 246999999999997633221 111111
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+-..++|||..|. |+.+|++.+.+.+.
T Consensus 137 ----------lG~g~~~~ISA~Hg~-Gi~dLld~v~~~l~ 165 (444)
T COG1160 137 ----------LGFGEPVPISAEHGR-GIGDLLDAVLELLP 165 (444)
T ss_pred ----------cCCCCceEeehhhcc-CHHHHHHHHHhhcC
Confidence 233457999999999 99999999999875
No 144
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=1.2e-17 Score=163.64 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=114.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|.+|+|||||++++++..+.. .+..++.+.....+.+++. ..+.+|||||..++ ......+++.||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP-KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF-------PAMRKLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cCCCchhhheeEEEEECCEEEEEEEEECCCchhh-------hHHHHHHhhcCC
Confidence 58999999999999999999876543 3334444555556666653 26889999996543 333446789999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh-HHHHHHHHHHHHhhHhhhccCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
++++|||++ +..+++.+..|...+.... ...+.|+|||+||+|+... +.+.......... .
T Consensus 73 ~vilv~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~---~----- 134 (198)
T cd04147 73 AFALVYAVD---------DPESFEEVERLREEILEVK-EDKFVPIVVVGNKADSLEEERQVPAKDALSTVE---L----- 134 (198)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEccccccccccccHHHHHHHHH---h-----
Confidence 999999998 6778888888877765432 2246899999999998653 3222111111100 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....+++++||++|. ||+++|+.+.+.+..
T Consensus 135 --------~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~ 164 (198)
T cd04147 135 --------DWNCGFVETSAKDNE-NVLEVFKELLRQANL 164 (198)
T ss_pred --------hcCCcEEEecCCCCC-CHHHHHHHHHHHhhc
Confidence 112368999999999 999999999987763
No 145
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=1e-17 Score=156.51 Aligned_cols=155 Identities=20% Similarity=0.207 Sum_probs=114.8
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|.+++|||||++++.+..+.....++.+.+.....+.+++. ..+.+|||||.. .+......+++.+|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-------~~~~~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE-------RFRSITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH-------HHHHHHHHHhcCCC
Confidence 7899999999999999999998776665666666666666665432 378999999953 34445667889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH-HHHHHHHHHhhHhhhccCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~~ 583 (654)
++++|+|++ ++++++.+..|...+.... ..+.|+++|+||+|+....+. .+++.+ +..
T Consensus 75 ~ii~v~d~~---------~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~--------- 133 (159)
T cd00154 75 GAILVYDIT---------NRESFENLDKWLKELKEYA--PENIPIILVGNKIDLEDQRQVSTEEAQQ-FAK--------- 133 (159)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEcccccccccccHHHHHH-HHH---------
Confidence 999999998 5667888888877765432 246899999999999633322 222222 221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 617 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~ 617 (654)
....+++++||++|. |++++|+.|.
T Consensus 134 --------~~~~~~~~~sa~~~~-~i~~~~~~i~ 158 (159)
T cd00154 134 --------ENGLLFFETSAKTGE-NVEELFQSLA 158 (159)
T ss_pred --------HcCCeEEEEecCCCC-CHHHHHHHHh
Confidence 123468999999999 9999999875
No 146
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=6.4e-18 Score=160.41 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=107.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCc----cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKI----ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~----~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
+|+++|++|+|||||++++.+..... .....+|.......+.+++ ..+.+|||||+.+ +...+..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~-------~~~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-ARLKFWDLGGQES-------LRSLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-EEEEEEECCCChh-------hHHHHHHHhC
Confidence 47899999999999999998753321 1122344555556677775 5899999999643 4445667899
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.+|++++|+|++ +..+++....|...+... ....+.|++||+||+|+..... ..++.+.+....+..
T Consensus 73 ~~~~~v~vvd~~---------~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~-- 139 (167)
T cd04160 73 ECHAIIYVIDST---------DRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEI-- 139 (167)
T ss_pred CCCEEEEEEECc---------hHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCC-HHHHHHHhccccccc--
Confidence 999999999998 444555555555444321 1234789999999999865421 111222111110000
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.....+++++||++|+ ||+++++.|++
T Consensus 140 ---------~~~~~~~~~~Sa~~g~-gv~e~~~~l~~ 166 (167)
T cd04160 140 ---------GRRDCLVLPVSALEGT-GVREGIEWLVE 166 (167)
T ss_pred ---------cCCceEEEEeeCCCCc-CHHHHHHHHhc
Confidence 0123479999999999 99999998864
No 147
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.77 E-value=1.5e-17 Score=160.19 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=114.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|+|||||++++++..+.....| ++.......+.+++. ..+.+|||||+.+ +......++..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 73 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQDE-------YSILPQKYSIGI 73 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCc-chhhhEEEEEEECCEEEEEEEEECCChHh-------hHHHHHHHHhhC
Confidence 3799999999999999999998765333334 333333455555542 2578999999654 333444678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|||++ +..+++.+..|...+.... ...+.|+|+|+||+|+...+.+..+....+.. .
T Consensus 74 ~~~i~v~d~~---------~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~---~----- 135 (180)
T cd04137 74 HGYILVYSVT---------SRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAE---S----- 135 (180)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHH---H-----
Confidence 9999999998 6778888888776665432 23468999999999987543332211111111 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
...+++++||++|+ |+.++|+.+.+.+...
T Consensus 136 ---------~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 136 ---------WGAAFLESSARENE-NVEEAFELLIEEIEKV 165 (180)
T ss_pred ---------cCCeEEEEeCCCCC-CHHHHHHHHHHHHHHh
Confidence 11368999999999 9999999999877543
No 148
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.76 E-value=1.3e-17 Score=156.78 Aligned_cols=157 Identities=24% Similarity=0.276 Sum_probs=107.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
||+++|.+|+|||||++++++... ....+ |.......+.+.+ ..+.+|||||..+ +...+..+++.+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~--t~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~~~~~~ 69 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIP--TIGFNVETVEYKN-VSFTVWDVGGQDK-------IRPLWKHYYENTNG 69 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCC--CcCcceEEEEECC-EEEEEEECCCChh-------hHHHHHHHhccCCE
Confidence 589999999999999999999862 22223 3334444566665 4799999999644 34445578899999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|||++ +..+++....+...+.... ...+.|+++|+||+|+..... .+++.+.+....
T Consensus 70 ~i~v~D~~---------~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~--------- 129 (158)
T cd00878 70 IIFVVDSS---------DRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGALS-VSELIEKLGLEK--------- 129 (158)
T ss_pred EEEEEECC---------CHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCccccC-HHHHHHhhChhh---------
Confidence 99999998 4455666555554443221 135789999999999876431 111221111100
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
......+++++||++|. |++++|+.|.+
T Consensus 130 ----~~~~~~~~~~~Sa~~~~-gv~~~~~~l~~ 157 (158)
T cd00878 130 ----ILGRRWHIQPCSAVTGD-GLDEGLDWLLQ 157 (158)
T ss_pred ----ccCCcEEEEEeeCCCCC-CHHHHHHHHhh
Confidence 01234579999999999 99999998864
No 149
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.76 E-value=1.2e-17 Score=160.14 Aligned_cols=158 Identities=22% Similarity=0.218 Sum_probs=105.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|++++|||||+++++...+. ...| |.......+.+++ .++.+|||||+. .+...+..+++.||
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~l~D~~G~~-------~~~~~~~~~~~~~d 84 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-HTSP--TIGSNVEEIVYKN-IRFLMWDIGGQE-------SLRSSWNTYYTNTD 84 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-CcCC--ccccceEEEEECC-eEEEEEECCCCH-------HHHHHHHHHhhcCC
Confidence 58999999999999999999886553 2333 3333445566665 489999999953 35556678899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ ++.++.....+...+... ....++|++||+||+|+.+... .+++.+.+.. .. .
T Consensus 85 ~vi~V~D~s---------~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~~~-~~~i~~~l~~-~~-~----- 146 (174)
T cd04153 85 AVILVIDST---------DRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGAMT-PAEISESLGL-TS-I----- 146 (174)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCCCC-HHHHHHHhCc-cc-c-----
Confidence 999999998 444555444433333211 1224689999999999865311 1112221110 00 0
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.....+++++||++|+ ||+++|+.|++
T Consensus 147 ------~~~~~~~~~~SA~~g~-gi~e~~~~l~~ 173 (174)
T cd04153 147 ------RDHTWHIQGCCALTGE-GLPEGLDWIAS 173 (174)
T ss_pred ------cCCceEEEecccCCCC-CHHHHHHHHhc
Confidence 0112368999999999 99999999864
No 150
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.76 E-value=1.9e-17 Score=160.87 Aligned_cols=171 Identities=20% Similarity=0.189 Sum_probs=110.6
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|++|+|||||++++.+..+. ... .|..+....+.+++ ..+.+|||||.. .+...+..+++.+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~--~T~~~~~~~i~~~~-~~~~l~D~~G~~-------~~~~~~~~~~~~a 87 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHV--PTLHPTSEELTIGN-IKFKTFDLGGHE-------QARRLWKDYFPEV 87 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-ccC--CccCcceEEEEECC-EEEEEEECCCCH-------HHHHHHHHHhccC
Confidence 368999999999999999999986552 222 24455667777876 579999999943 3445566788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++....+..++... ....+.|++||+||+|+..... .+++.+.+.. .+......
T Consensus 88 d~iilV~D~~---------~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~~-~~~~~~~~~~-~~~~~~~~ 155 (190)
T cd00879 88 DGIVFLVDAA---------DPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAVS-EEELRQALGL-YGTTTGKG 155 (190)
T ss_pred CEEEEEEECC---------cHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCcC-HHHHHHHhCc-cccccccc
Confidence 9999999998 445555555444444321 1235689999999999864211 1122221111 00000000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
... ++......+++++||++|+ ||+++|+.+++.
T Consensus 156 ~~~-~~~~~~~~~~~~~Sa~~~~-gv~e~~~~l~~~ 189 (190)
T cd00879 156 VSL-KVSGIRPIEVFMCSVVKRQ-GYGEAFRWLSQY 189 (190)
T ss_pred ccc-cccCceeEEEEEeEecCCC-ChHHHHHHHHhh
Confidence 000 0011123468999999999 999999999764
No 151
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=3.2e-17 Score=169.00 Aligned_cols=164 Identities=29% Similarity=0.371 Sum_probs=130.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc-chhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~-~~~~~~~~~~~~a 503 (654)
+.|+++|.+|+|||||+|.+++......+..|+|.++.+..+.+.+++.+.+-||-|+++..+... ..+..+++....|
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~a 272 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEA 272 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcC
Confidence 689999999999999999999988888899999999999999999878999999999998876554 4667889999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|+++||+|+++ ....+.+....+.+... ....+|+|+|+||+|+..+......+. ..
T Consensus 273 DlllhVVDaSd---------p~~~~~~~~v~~vL~el--~~~~~p~i~v~NKiD~~~~~~~~~~~~-------~~----- 329 (411)
T COG2262 273 DLLLHVVDASD---------PEILEKLEAVEDVLAEI--GADEIPIILVLNKIDLLEDEEILAELE-------RG----- 329 (411)
T ss_pred CEEEEEeecCC---------hhHHHHHHHHHHHHHHc--CCCCCCEEEEEecccccCchhhhhhhh-------hc-----
Confidence 99999999993 34445555544444433 234589999999999876543111111 10
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
. ...+++||++|. |+++|++.|.+.+..
T Consensus 330 ---------~-~~~v~iSA~~~~-gl~~L~~~i~~~l~~ 357 (411)
T COG2262 330 ---------S-PNPVFISAKTGE-GLDLLRERIIELLSG 357 (411)
T ss_pred ---------C-CCeEEEEeccCc-CHHHHHHHHHHHhhh
Confidence 0 137999999999 999999999998863
No 152
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.76 E-value=1.7e-17 Score=157.94 Aligned_cols=156 Identities=20% Similarity=0.185 Sum_probs=104.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|.+|+|||||+++|++..+.....++. .+.....+..++. ..+.+|||||+.++.... ..+++.+|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~-------~~~~~~~~ 73 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV-FDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR-------PLSYPNTD 73 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeEEEEEECCEEEEEEEEeCCCcccccccc-------hhhcCCCC
Confidence 79999999999999999999986643333332 2333333444432 268999999987653222 24568999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHH-----------HHHHHHH
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-----------DGIRDTL 572 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~-----------~~~~~~~ 572 (654)
++++|||++ ++.++.... .|...+... ..+.|+++|+||+|+....... .+....+
T Consensus 74 ~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 74 VFLICFSVD---------SPSSFENVKTKWIPEIRHY---CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhh---CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHH
Confidence 999999998 555665543 455555433 2379999999999987654321 1111111
Q ss_pred HhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 573 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.. .....+++++||++|+ |++++|+.|.+
T Consensus 142 ~~----------------~~~~~~~~~~Sa~~~~-gi~~l~~~i~~ 170 (171)
T cd00157 142 AK----------------EIGAIGYMECSALTQE-GVKEVFEEAIR 170 (171)
T ss_pred HH----------------HhCCeEEEEeecCCCC-CHHHHHHHHhh
Confidence 11 1222368999999999 99999998875
No 153
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=1.3e-17 Score=156.48 Aligned_cols=154 Identities=25% Similarity=0.392 Sum_probs=109.4
Q ss_pred EEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh--hcccEE
Q psy1086 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV--ERTKLI 506 (654)
Q Consensus 429 ~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~--~~a~~~ 506 (654)
++|.+|+|||||++++.+........+++|.+.....+.+++ ..+.+|||||+.+....... ......++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG-KEIEIVDLPGTYSLSPYSED-EKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC-eEEEEEECCCccccCCCChh-HHHHHHHhcCCCCcEE
Confidence 479999999999999999876667789999999888888886 48999999998765533211 11123344 499999
Q ss_pred EEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCC
Q psy1086 507 AMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEF 586 (654)
Q Consensus 507 ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 586 (654)
++|+|+++. . ....+..++. ..++|+++|+||+|+.+...+..+.. .+.. .
T Consensus 79 i~v~d~~~~---------~---~~~~~~~~~~-----~~~~~~iiv~NK~Dl~~~~~~~~~~~-~~~~---~-------- 129 (158)
T cd01879 79 VNVVDATNL---------E---RNLYLTLQLL-----ELGLPVVVALNMIDEAEKRGIKIDLD-KLSE---L-------- 129 (158)
T ss_pred EEEeeCCcc---------h---hHHHHHHHHH-----HcCCCEEEEEehhhhcccccchhhHH-HHHH---h--------
Confidence 999999831 1 1112222322 13689999999999976544333222 1211 1
Q ss_pred CccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 587 QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 587 ~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+.+++++||++|+ |++++++.+.+..
T Consensus 130 ------~~~~~~~iSa~~~~-~~~~l~~~l~~~~ 156 (158)
T cd01879 130 ------LGVPVVPTSARKGE-GIDELKDAIAELA 156 (158)
T ss_pred ------hCCCeEEEEccCCC-CHHHHHHHHHHHh
Confidence 12368999999999 9999999988753
No 154
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.76 E-value=2e-17 Score=158.29 Aligned_cols=164 Identities=19% Similarity=0.195 Sum_probs=109.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|++|||||||++++++..+.....|++ .......+.+++.. .+.+|||||+.++.... ..+++.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLR-------PLSYPDT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ccceEEEEEECCEEEEEEEEeCCCchhhhhcc-------ccccCCC
Confidence 379999999999999999999876543333333 33334456666532 67899999976544322 2467899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLK 576 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~ 576 (654)
|++++|||++ ++++++.+. .|...+... ..+.|+++|+||+|+.........+... ....+
T Consensus 74 d~~i~v~~~~---------~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~ 141 (175)
T cd01870 74 DVILMCFSID---------SPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGR 141 (175)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHH
Confidence 9999999998 667777774 466655432 2468999999999987543222111100 00000
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+... .....+++++||++|. ||+++|+.+.+.
T Consensus 142 ~~~~----------~~~~~~~~~~Sa~~~~-~v~~lf~~l~~~ 173 (175)
T cd01870 142 DMAN----------KIGAFGYMECSAKTKE-GVREVFEMATRA 173 (175)
T ss_pred HHHH----------HcCCcEEEEeccccCc-CHHHHHHHHHHH
Confidence 0000 0122368999999999 999999999864
No 155
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.76 E-value=2.4e-17 Score=154.88 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=112.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|++|+|||||++++++.. +.....+++.+.....+.+++. ..+.+|||||..+ +......+++.+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-------FSAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHHhcCC
Confidence 58999999999999999999876 4444444555666666666542 2688999999543 3444557788999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|||++ +.++++.+..|...+..... ..+.|+++|+||+|+.....+..+....+.. +
T Consensus 73 ~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~------- 133 (160)
T cd00876 73 GFILVYSIT---------DRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKEEGKALAK--E------- 133 (160)
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHHHHHHHHH--H-------
Confidence 999999998 56677777777666644322 1478999999999997643332222222211 0
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
...+++++||++|. |++++|+.|.+.
T Consensus 134 --------~~~~~~~~S~~~~~-~i~~l~~~l~~~ 159 (160)
T cd00876 134 --------WGCPFIETSAKDNI-NIDEVFKLLVRE 159 (160)
T ss_pred --------cCCcEEEeccCCCC-CHHHHHHHHHhh
Confidence 11468999999999 999999998764
No 156
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=1.9e-17 Score=157.52 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=108.5
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
.|+++|.++||||||++++.+. +.....|+ ..+....+.+++ ..+.+|||||. ..+...+..|++.||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t--~g~~~~~~~~~~-~~~~i~D~~G~-------~~~~~~~~~~~~~a~~ 69 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPT--VGFTPTKLRLDK-YEVCIFDLGGG-------ANFRGIWVNYYAEAHG 69 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCc--ccceEEEEEECC-EEEEEEECCCc-------HHHHHHHHHHHcCCCE
Confidence 3789999999999999999976 32223333 334455666665 47999999994 3455667789999999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|||++ +..+++....|...+... ....++|++||+||+|+.+.+...+ +.+.+ .+.+.....
T Consensus 70 ii~V~D~s---------~~~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~-i~~~~-~l~~~~~~~--- 134 (167)
T cd04161 70 LVFVVDSS---------DDDRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLGAD-VIEYL-SLEKLVNEN--- 134 (167)
T ss_pred EEEEEECC---------chhHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCHHH-HHHhc-CcccccCCC---
Confidence 99999998 555677777666665422 1224789999999999976542221 11111 111111000
Q ss_pred CCccccccccceEEEeeecC------CCChHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTN------STDVNDAKLKIRS 618 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg------~~gv~el~~~i~~ 618 (654)
....+++++||++| + |+.+.|+.+..
T Consensus 135 ------~~~~~~~~~Sa~~g~~~~~~~-g~~~~~~wl~~ 166 (167)
T cd04161 135 ------KSLCHIEPCSAIEGLGKKIDP-SIVEGLRWLLA 166 (167)
T ss_pred ------CceEEEEEeEceeCCCCcccc-CHHHHHHHHhc
Confidence 11235788999998 7 99999998853
No 157
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=4.3e-18 Score=174.33 Aligned_cols=91 Identities=42% Similarity=0.779 Sum_probs=83.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------------cEEEEecCccccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------------KMSVADLPGLIEGAH 239 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------------~~~i~D~PGl~~~~~ 239 (654)
-.+||||.||+|||||+|+||.....+++|||+|++|+.|.+...+.+ .+.++|++|+..+++
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 368999999999999999999999889999999999999999875421 468999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHhhcccCc
Q psy1086 240 RNLGMGHQFLRHVERTKLIAMIVDVNGF 267 (654)
Q Consensus 240 ~~~~l~~~~l~~i~~~~~il~vvd~~~~ 267 (654)
.++|||.+|+.+++.+|+++||+|+.+.
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 9999999999999999999999999853
No 158
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=1.7e-17 Score=156.12 Aligned_cols=157 Identities=24% Similarity=0.246 Sum_probs=101.8
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
||+++|++++|||||++++....+. ...|+ .......+.+.+ ..+.+|||||+.+ +...+..+++.||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t--~~~~~~~~~~~~-~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~ 69 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPT--IGFNVETVTYKN-LKFQVWDLGGQTS-------IRPYWRCYYSNTDA 69 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCc--cCcCeEEEEECC-EEEEEEECCCCHH-------HHHHHHHHhcCCCE
Confidence 5899999999999999999776543 33333 333334555554 4799999999543 45566788999999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|+|++ ++.++.....+...+.. .....++|++||+||+|+.+... ..++.+.+. .. .
T Consensus 70 ii~v~d~~---------~~~~~~~~~~~~~~~~~-~~~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~----~~-----~ 129 (158)
T cd04151 70 IIYVVDST---------DRDRLGTAKEELHAMLE-EEELKGAVLLVFANKQDMPGALS-EAEISEKLG----LS-----E 129 (158)
T ss_pred EEEEEECC---------CHHHHHHHHHHHHHHHh-chhhcCCcEEEEEeCCCCCCCCC-HHHHHHHhC----cc-----c
Confidence 99999998 44444333222222111 11224689999999999875421 111211110 00 0
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
+ .....++|++||++|. ||+++|+.+++
T Consensus 130 ~----~~~~~~~~~~Sa~~~~-gi~~l~~~l~~ 157 (158)
T cd04151 130 L----KDRTWSIFKTSAIKGE-GLDEGMDWLVN 157 (158)
T ss_pred c----CCCcEEEEEeeccCCC-CHHHHHHHHhc
Confidence 0 0112368999999999 99999999865
No 159
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=1.8e-17 Score=160.72 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=108.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.|++++|++|+|||||++++....+.....++ ..+.....+.+++. ..+.+|||||+.++..... .+++.+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~-------~~~~~a 73 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPT-VFENYVTDCRVDGKPVQLALWDTAGQEEYERLRP-------LSYSKA 73 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc-ccceEEEEEEECCEEEEEEEEECCCChhccccch-------hhcCCC
Confidence 38999999999999999999876554333332 23333345555542 2578999999765432221 357899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChH----------HHHHHHHHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQ----------EIYDGIRDTL 572 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~----------~v~~~~~~~~ 572 (654)
|++++|||++ +.++++.+. .|...+.... .+.|+|||+||+|+.+.. .+..+....+
T Consensus 74 ~~~llv~~i~---------~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 74 HVILIGFAVD---------TPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHH
Confidence 9999999998 667888876 4777765432 369999999999985421 1111111112
Q ss_pred HhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 573 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+. . .+..++|++||++|. ||+++|+.+.+.+-
T Consensus 142 ~~---~-------------~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~ 173 (187)
T cd04129 142 AK---E-------------IGAKKYMECSALTGE-GVDDVFEAATRAAL 173 (187)
T ss_pred HH---H-------------hCCcEEEEccCCCCC-CHHHHHHHHHHHHh
Confidence 11 1 122368999999999 99999999997664
No 160
>COG1159 Era GTPase [General function prediction only]
Probab=99.75 E-value=2.3e-18 Score=170.86 Aligned_cols=164 Identities=27% Similarity=0.358 Sum_probs=123.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecCccccccc-ccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~-~~~~l~~~~l~~i~~~ 255 (654)
.|++||+||+|||||+|.|.|++..| ++-|-||+....|.+..++ .+++++||||+....+ .+..|.+.....+..+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-AQIIFVDTPGIHKPKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccC
Confidence 58999999999999999999998876 5779999999999998776 5999999999976533 3444556667778889
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHH-HHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKE-LELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~e-l~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
|+++||+|+... +.. ..+. +..+.. ...|.++++||+|.......+..+.+....
T Consensus 87 Dlilfvvd~~~~-------~~~-------~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~-------- 142 (298)
T COG1159 87 DLILFVVDADEG-------WGP-------GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKK-------- 142 (298)
T ss_pred cEEEEEEecccc-------CCc-------cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHh--------
Confidence 999999999731 111 1111 122221 467999999999988776633344444432
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
...|..++++||.++ .+++.|.+.+.+++++.
T Consensus 143 --------~~~f~~ivpiSA~~g-~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 143 --------LLPFKEIVPISALKG-DNVDTLLEIIKEYLPEG 174 (298)
T ss_pred --------hCCcceEEEeecccc-CCHHHHHHHHHHhCCCC
Confidence 223457999999999 99999999999888764
No 161
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.74 E-value=6.2e-17 Score=155.55 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=100.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc------C---------CCcccccceeEEEEe---CC-CceEEEEecCCCCCCC
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA------S---------YPFTTIKPNVGVITF---DD-FRKMSVADLPGLIEGA 486 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~------~---------~~~~t~~~~~~~v~~---~~-~~~~~i~DTpG~~~~~ 486 (654)
+|+++|+.++|||||+++|++...... . ..+++.......+.+ ++ ...+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 589999999999999999998532110 0 123344333333434 22 23688999999754
Q ss_pred ccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHH
Q psy1086 487 HRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYD 566 (654)
Q Consensus 487 ~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~ 566 (654)
+...+..+++.||++++|+|++. ..+++.+..|.... ..++|+++|+||+|+.+... .
T Consensus 80 -----~~~~~~~~~~~ad~~i~v~D~~~---------~~~~~~~~~~~~~~------~~~~~iiiv~NK~Dl~~~~~--~ 137 (179)
T cd01890 80 -----FSYEVSRSLAACEGALLLVDATQ---------GVEAQTLANFYLAL------ENNLEIIPVINKIDLPSADP--E 137 (179)
T ss_pred -----hHHHHHHHHHhcCeEEEEEECCC---------CccHhhHHHHHHHH------HcCCCEEEEEECCCCCcCCH--H
Confidence 44566688999999999999983 33344444443221 13689999999999864321 1
Q ss_pred HHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 567 GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...+.+++ .. . .....+|++||++|. ||++||+.+.+.+
T Consensus 138 ~~~~~~~~---~~-~----------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~ 176 (179)
T cd01890 138 RVKQQIED---VL-G----------LDPSEAILVSAKTGL-GVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHH---Hh-C----------CCcccEEEeeccCCC-CHHHHHHHHHhhC
Confidence 11112222 11 0 011248999999999 9999999998754
No 162
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=7.6e-19 Score=162.38 Aligned_cols=150 Identities=29% Similarity=0.549 Sum_probs=104.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccc--cccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR--NLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~--~~~l~~~~l~~i~~~ 255 (654)
+|+|+|.||+|||||+|+|+|.+..+++||++|.++..|.+.+.+ ..+.++|+||+...... .+.+...++. .+..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~-~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD-QQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT-EEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC-ceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 589999999999999999999999999999999999999999987 58999999998754322 1122222222 2456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l~~~i~ 332 (654)
|++++|+|+... -..+. +..++.. ...|.++++||+|....... .+.+.+.+.
T Consensus 80 D~ii~VvDa~~l-----------~r~l~-l~~ql~e-----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------- 135 (156)
T PF02421_consen 80 DLIIVVVDATNL-----------ERNLY-LTLQLLE-----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------- 135 (156)
T ss_dssp SEEEEEEEGGGH-----------HHHHH-HHHHHHH-----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT-------
T ss_pred CEEEEECCCCCH-----------HHHHH-HHHHHHH-----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC-------
Confidence 778888888631 12222 2222221 57999999999998765432 233333332
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKI 368 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i 368 (654)
.+++++||+++ +|+++|++.|
T Consensus 136 --------------~pvi~~sa~~~-~g~~~L~~~I 156 (156)
T PF02421_consen 136 --------------VPVIPVSARTG-EGIDELKDAI 156 (156)
T ss_dssp --------------S-EEEEBTTTT-BTHHHHHHHH
T ss_pred --------------CCEEEEEeCCC-cCHHHHHhhC
Confidence 27999999999 9999998875
No 163
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.74 E-value=1.1e-17 Score=173.76 Aligned_cols=176 Identities=31% Similarity=0.471 Sum_probs=129.6
Q ss_pred EEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeC---------------------C--CccEEEEecCccc
Q psy1086 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD---------------------D--FRKMSVADLPGLI 235 (654)
Q Consensus 179 VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~---------------------~--~~~~~i~D~PGl~ 235 (654)
|||||.||+|||||+|+|++..+.+++|||+|+.|+.|.+.+. + ...+.++|+||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 6899999999999999999999999999999999999988752 1 1358999999999
Q ss_pred ccccccccchHHHHHHHHHHHHHHHhhcccCcccC--CCCC--ccChHHHHHHHHHHHHHHh------------------
Q psy1086 236 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLG--LKHP--KRSCVETVLLLNKELELYK------------------ 293 (654)
Q Consensus 236 ~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~--~~~~--~~~~~~~l~~~~~el~~~~------------------ 293 (654)
++++.+.+++.+|+.++..+|++++|+|+.+..-. ..|. ..+|.+++..+..|+..+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999752100 0111 1245555544444433310
Q ss_pred -----------------------------------------------H--hhcCcceeEeecccCccchHhHHHHHHHHH
Q psy1086 294 -----------------------------------------------M--NLLEKPIILLVNKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 294 -----------------------------------------------~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~ 324 (654)
. .+..+|.++++||.|+....+..+.+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~- 239 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLK- 239 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhh-
Confidence 0 13457999999999986544333322110
Q ss_pred hccccccccCCCccchhhhcccceEEEeecccCccchHHHHH-HHHHHHHHh
Q psy1086 325 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL-KIRSILDLL 375 (654)
Q Consensus 325 ~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~-~i~~~l~~~ 375 (654)
..+..++++||+.+ .++.+|.+ .+.++++..
T Consensus 240 -------------------~~~~~iI~iSA~~e-~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 240 -------------------YPDEIVVPTSAEAE-LALRRAAKQGLIKYDPGD 271 (318)
T ss_pred -------------------CCCCeEEEEeCccc-ccHHHHHHhhHHHhCCCC
Confidence 01236899999999 99999997 588887653
No 164
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.74 E-value=4.4e-17 Score=163.15 Aligned_cols=170 Identities=28% Similarity=0.448 Sum_probs=120.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
+|+++|.+|+|||||+++|.+.......++++|.++..+.+.+++. .+++|||||+.+.......+..+++.+++.||+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA-KIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe-EEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 6899999999999999999998777778899999999999988874 899999999987665444566677889999999
Q ss_pred EEEEEeCCCcccC------------C------------------------CCCccchHHHHHHHHHHHHHhh--------
Q psy1086 506 IAMIVDVNGFQLG------------L------------------------KHPKRSCVETVLLLNKELELYK-------- 541 (654)
Q Consensus 506 ~ilV~D~~~~~~~------------~------------------------~~~~~~~~e~~~~~~~~l~~~~-------- 541 (654)
+++|+|+++.... + .+......+.+..+..++..+.
T Consensus 81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 9999999743210 0 0000011233333333321110
Q ss_pred ----------c-ccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChH
Q psy1086 542 ----------M-NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVN 610 (654)
Q Consensus 542 ----------~-~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~ 610 (654)
. ...-.|+++|+||+|+....+.. .++. ..+++++||++|. |++
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~-----~~~~-------------------~~~~~~~SA~~g~-gi~ 215 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD-----LLAR-------------------QPNSVVISAEKGL-NLD 215 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH-----HHhc-------------------CCCEEEEcCCCCC-CHH
Confidence 0 11236999999999997654322 1111 1247999999999 999
Q ss_pred HHHHHHHHHHH
Q psy1086 611 DAKLKIRSILD 621 (654)
Q Consensus 611 el~~~i~~~~~ 621 (654)
+||+.+.+.+.
T Consensus 216 ~l~~~i~~~L~ 226 (233)
T cd01896 216 ELKERIWDKLG 226 (233)
T ss_pred HHHHHHHHHhC
Confidence 99999988664
No 165
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=4.6e-17 Score=152.28 Aligned_cols=154 Identities=23% Similarity=0.282 Sum_probs=112.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc-chhHHHHHHhh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHVE 501 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~-~~~~~~~~~~~ 501 (654)
|.+|+++|++|+||||+++++++.... ....+++|.++....+.+.+ .++.+|||||+.+...... .....+..++.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC-EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 458999999999999999999987653 35678888888777777765 4799999999876543211 11234556788
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.+|++++|+|++. +.+......+.. ..+.|+++|+||+|+.+.... ..
T Consensus 80 ~~~~~v~v~d~~~---------~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~-------~~-------- 127 (157)
T cd04164 80 EADLVLFVIDASR---------GLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL-------LS-------- 127 (157)
T ss_pred hCCEEEEEEECCC---------CCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc-------cc--------
Confidence 9999999999983 333333322221 246899999999999765332 00
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.....+++++||+++. |++++++.|.+.+
T Consensus 128 ---------~~~~~~~~~~Sa~~~~-~v~~l~~~l~~~~ 156 (157)
T cd04164 128 ---------LLAGKPIIAISAKTGE-GLDELKEALLELA 156 (157)
T ss_pred ---------ccCCCceEEEECCCCC-CHHHHHHHHHHhh
Confidence 0123468999999999 9999999988764
No 166
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.74 E-value=1e-16 Score=152.09 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=108.1
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC--CCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD--DFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~--~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.|+++|.+|+|||||+++|.+..+.....+++|.+.....+.++ ....+.+|||||+.+ +...+..+++.|
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~ 74 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-------FTNMRARGASLT 74 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-------HHHHHHHHHhhc
Confidence 58999999999999999999887665556667766655566654 235799999999533 444455678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|+++.. ..++++.+. .+. ..+.|+++|+||+|+..... ..+.+.+........
T Consensus 75 d~il~v~d~~~~~------~~~~~~~~~----~~~-----~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~--- 134 (168)
T cd01887 75 DIAILVVAADDGV------MPQTIEAIK----LAK-----AANVPFIVALNKIDKPNANP--ERVKNELSELGLQGE--- 134 (168)
T ss_pred CEEEEEEECCCCc------cHHHHHHHH----HHH-----HcCCCEEEEEEceecccccH--HHHHHHHHHhhcccc---
Confidence 9999999998321 122222221 121 14689999999999874321 111111111110000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+......+++++||++|+ |+++|++.+.+..+
T Consensus 135 -----~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 166 (168)
T cd01887 135 -----DEWGGDVQIVPTSAKTGE-GIDDLLEAILLLAE 166 (168)
T ss_pred -----ccccCcCcEEEeecccCC-CHHHHHHHHHHhhh
Confidence 001123478999999999 99999999988764
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.4e-16 Score=151.53 Aligned_cols=165 Identities=19% Similarity=0.305 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchh----HHHHHH
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG----HQFLRH 499 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~----~~~~~~ 499 (654)
.+|+++|.+|+|||||++++++.... ....++++.......+.+++ ..+.+|||||+.+.......+. .....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC-eeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 58999999999999999999987643 34567778777777777776 4799999999876543222221 233456
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH-HHHHHHHHHHHhhHhh
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNLKDH 578 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~-~v~~~~~~~~~~~~~~ 578 (654)
++.+|++++|+|++.. .+.+... +...+ ...+.|+++|+||+|+.+.. .....+.+ .+.+.
T Consensus 82 ~~~~d~vi~v~d~~~~---------~~~~~~~-~~~~~-----~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~---~~~~~ 143 (174)
T cd01895 82 IERADVVLLVIDATEG---------ITEQDLR-IAGLI-----LEEGKALVIVVNKWDLVEKDSKTMKEFKK---EIRRK 143 (174)
T ss_pred HhhcCeEEEEEeCCCC---------cchhHHH-HHHHH-----HhcCCCEEEEEeccccCCccHHHHHHHHH---HHHhh
Confidence 7899999999999832 2222221 11111 11368999999999987652 11111222 22221
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+. ...+.+++++||+++. |++++++.+.+.
T Consensus 144 ~~----------~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~ 173 (174)
T cd01895 144 LP----------FLDYAPIVFISALTGQ-GVDKLFDAIDEV 173 (174)
T ss_pred cc----------cccCCceEEEeccCCC-CHHHHHHHHHHh
Confidence 11 1223579999999999 999999998875
No 168
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=4.6e-17 Score=152.37 Aligned_cols=154 Identities=25% Similarity=0.314 Sum_probs=107.9
Q ss_pred EEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc-cccchhHHHHHHhhcccE
Q psy1086 428 GLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 428 ~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~-~~~~~~~~~~~~~~~a~~ 505 (654)
+++|.+|+|||||+++|++... .....+++|.+.....+.+++ ..+.+|||||+.+... ....+...+..+++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-REFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 4789999999999999998753 345677888888877787776 4799999999876543 112244455678899999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|+|+++. ++ .... .+...+. ..+.|+++|+||+|+.+.... .+.+..
T Consensus 80 ii~v~d~~~~---~~------~~~~-~~~~~~~-----~~~~piiiv~nK~D~~~~~~~----~~~~~~----------- 129 (157)
T cd01894 80 ILFVVDGREG---LT------PADE-EIAKYLR-----KSKKPVILVVNKVDNIKEEDE----AAEFYS----------- 129 (157)
T ss_pred EEEEEecccc---CC------ccHH-HHHHHHH-----hcCCCEEEEEECcccCChHHH----HHHHHh-----------
Confidence 9999999732 11 1111 1122222 135899999999999865432 111111
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
....+++++||++|. |++++|+.+.+.
T Consensus 130 ------~~~~~~~~~Sa~~~~-gv~~l~~~l~~~ 156 (157)
T cd01894 130 ------LGFGEPIPISAEHGR-GIGDLLDAILEL 156 (157)
T ss_pred ------cCCCCeEEEecccCC-CHHHHHHHHHhh
Confidence 111257999999999 999999998864
No 169
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.73 E-value=1.2e-16 Score=155.68 Aligned_cols=165 Identities=21% Similarity=0.295 Sum_probs=103.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhc-------CCCccCCCcccccceeEEEEeC-------------CCceEEEEecCCCCCC
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRA-------RPKIASYPFTTIKPNVGVITFD-------------DFRKMSVADLPGLIEG 485 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~-------~~~~~~~~~~t~~~~~~~v~~~-------------~~~~~~i~DTpG~~~~ 485 (654)
+|+++|+.++|||||+++|++. .......+++|.+.....+.+. ....+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 6899999999999999999973 1112235567777766555554 12479999999962
Q ss_pred CccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHH
Q psy1086 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY 565 (654)
Q Consensus 486 ~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~ 565 (654)
.+...+......+|++++|+|++.. ........+. ... ..+.|+++|+||+|+.......
T Consensus 80 -----~~~~~~~~~~~~~d~vi~VvD~~~~---------~~~~~~~~~~-~~~-----~~~~~~iiv~NK~Dl~~~~~~~ 139 (192)
T cd01889 80 -----SLIRTIIGGAQIIDLMLLVVDATKG---------IQTQTAECLV-IGE-----ILCKKLIVVLNKIDLIPEEERE 139 (192)
T ss_pred -----HHHHHHHHHHhhCCEEEEEEECCCC---------ccHHHHHHHH-HHH-----HcCCCEEEEEECcccCCHHHHH
Confidence 2444455666788999999999831 1111111111 111 1357999999999997543322
Q ss_pred HHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 566 DGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+..+.+...+... ...+.+++++||++|. |+++|++.+..++-
T Consensus 140 ~~~~~~~~~l~~~~~~~--------~~~~~~vi~iSa~~g~-gi~~L~~~l~~~~~ 186 (192)
T cd01889 140 RKIEKMKKKLQKTLEKT--------RFKNSPIIPVSAKPGG-GEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHHHHHhc--------CcCCCCEEEEeccCCC-CHHHHHHHHHhccc
Confidence 11111111111111000 0134579999999999 99999999987653
No 170
>KOG4252|consensus
Probab=99.73 E-value=4.9e-18 Score=153.48 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=133.8
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
...+++++|.-++||||++.+++..-+...+..+++.++...++.+.+. ..+.+|||+|+ +++-..+..|||
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq-------eEfDaItkAyyr 91 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ-------EEFDAITKAYYR 91 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccc-------hhHHHHHHHHhc
Confidence 3468999999999999999999998777777788888888877776543 25789999995 445566678999
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
+|.+.++||..+ |+.+|+.+..|.++++.. ...+|.++|-||+|++++.++.....+.++.....
T Consensus 92 gaqa~vLVFSTT---------Dr~SFea~~~w~~kv~~e---~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~--- 156 (246)
T KOG4252|consen 92 GAQASVLVFSTT---------DRYSFEATLEWYNKVQKE---TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK--- 156 (246)
T ss_pred cccceEEEEecc---------cHHHHHHHHHHHHHHHHH---hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhh---
Confidence 999999999998 899999999999988643 34699999999999998877766666655543222
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
-++-+|++... ||...|..+++.+.+.
T Consensus 157 --------------RlyRtSvked~-NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 157 --------------RLYRTSVKEDF-NVMHVFAYLAEKLTQQ 183 (246)
T ss_pred --------------hhhhhhhhhhh-hhHHHHHHHHHHHHHH
Confidence 25789999999 9999999999887543
No 171
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.73 E-value=2.5e-17 Score=152.07 Aligned_cols=140 Identities=18% Similarity=0.224 Sum_probs=88.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
||+++|++|+|||||++++.+..+. ..+ +..+.+.. .+|||||+... ...........++.||+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~-------t~~~~~~~----~~iDt~G~~~~---~~~~~~~~~~~~~~ad~ 65 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKK-------TQAVEYND----GAIDTPGEYVE---NRRLYSALIVTAADADV 65 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccc-------ceeEEEcC----eeecCchhhhh---hHHHHHHHHHHhhcCCE
Confidence 7899999999999999999987541 111 11233332 58999996311 11122223346899999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|||+++ ..++.. ..|... ...|+++|+||+|+.+.....++..+....
T Consensus 66 vilv~d~~~---------~~s~~~-~~~~~~--------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----------- 116 (142)
T TIGR02528 66 IALVQSATD---------PESRFP-PGFASI--------FVKPVIGLVTKIDLAEADVDIERAKELLET----------- 116 (142)
T ss_pred EEEEecCCC---------CCcCCC-hhHHHh--------ccCCeEEEEEeeccCCcccCHHHHHHHHHH-----------
Confidence 999999983 233322 122221 125999999999986532211111111111
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 617 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~ 617 (654)
....++|++||++|. |++++|+.++
T Consensus 117 ------~~~~~~~~~Sa~~~~-gi~~l~~~l~ 141 (142)
T TIGR02528 117 ------AGAEPIFEISSVDEQ-GLEALVDYLN 141 (142)
T ss_pred ------cCCCcEEEEecCCCC-CHHHHHHHHh
Confidence 112368999999999 9999999875
No 172
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=7.3e-17 Score=178.30 Aligned_cols=162 Identities=22% Similarity=0.236 Sum_probs=115.7
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCC-ccccchhHHHHHHh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA-HRNLGMGHQFLRHV 500 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~-~~~~~~~~~~~~~~ 500 (654)
...+|+++|.+|||||||+|+|++.... ....+++|.+.....+.+++ ..+.+|||||+.... .....+...+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3468999999999999999999997654 45688899998888888887 479999999986322 12223555667789
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+.||++++|+|+++ ..++. ...+..++. ..++|+|+|+||+|+..... +..+.+ .
T Consensus 116 ~~aD~il~VvD~~~---------~~s~~-~~~i~~~l~-----~~~~piilV~NK~Dl~~~~~---~~~~~~-~------ 170 (472)
T PRK03003 116 RTADAVLFVVDATV---------GATAT-DEAVARVLR-----RSGKPVILAANKVDDERGEA---DAAALW-S------ 170 (472)
T ss_pred HhCCEEEEEEECCC---------CCCHH-HHHHHHHHH-----HcCCCEEEEEECccCCccch---hhHHHH-h------
Confidence 99999999999983 22222 123344443 24699999999999864211 111111 1
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+...++|||++|. ||++||+.|.+.+.+
T Consensus 171 -----------~g~~~~~~iSA~~g~-gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 171 -----------LGLGEPHPVSALHGR-GVGDLLDAVLAALPE 200 (472)
T ss_pred -----------cCCCCeEEEEcCCCC-CcHHHHHHHHhhccc
Confidence 011124799999999 999999999887643
No 173
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.73 E-value=1.1e-16 Score=149.77 Aligned_cols=157 Identities=23% Similarity=0.265 Sum_probs=106.4
Q ss_pred EEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEE
Q psy1086 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLI 506 (654)
Q Consensus 427 v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ 506 (654)
|+++|++|+|||||++++.+..+.....|+++.+. ..+..++ ..+.+|||||.. .+...+..+++.+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~D~~g~~-------~~~~~~~~~~~~~d~i 71 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNM--RKVTKGN-VTLKVWDLGGQP-------RFRSMWERYCRGVNAI 71 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcce--EEEEECC-EEEEEEECCCCH-------hHHHHHHHHHhcCCEE
Confidence 78999999999999999999876555555444333 3455554 479999999953 3445566889999999
Q ss_pred EEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCC
Q psy1086 507 AMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEF 586 (654)
Q Consensus 507 ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 586 (654)
++|+|++ +..++.....+..++... ....+.|+++|+||+|+.+...... +.+.+. +...
T Consensus 72 i~v~d~~---------~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~~~-~~~~~~-~~~~-------- 131 (159)
T cd04159 72 VYVVDAA---------DRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSVDE-LIEQMN-LKSI-------- 131 (159)
T ss_pred EEEEECC---------CHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCHHH-HHHHhC-cccc--------
Confidence 9999998 444555544444433221 1224689999999999875432211 111110 0000
Q ss_pred CccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 587 QPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 587 ~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.....+++++||++|. |++++++.+.+
T Consensus 132 ----~~~~~~~~~~Sa~~~~-gi~~l~~~l~~ 158 (159)
T cd04159 132 ----TDREVSCYSISCKEKT-NIDIVLDWLIK 158 (159)
T ss_pred ----cCCceEEEEEEeccCC-ChHHHHHHHhh
Confidence 0123468999999999 99999999865
No 174
>PTZ00258 GTP-binding protein; Provisional
Probab=99.72 E-value=2.7e-17 Score=173.68 Aligned_cols=113 Identities=30% Similarity=0.561 Sum_probs=91.8
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc----------------cEEEEecCccccccc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGAH 239 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~----------------~~~i~D~PGl~~~~~ 239 (654)
..+|||||.||+|||||+|+|++..+.+++|||||+.|+.|.+.+.+.+ ++.++|+||+..+++
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 4479999999999999999999999999999999999999999876432 589999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHhhcccCcccCCCCC--ccChHHHHHHHHHHH
Q psy1086 240 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHP--KRSCVETVLLLNKEL 289 (654)
Q Consensus 240 ~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~--~~~~~~~l~~~~~el 289 (654)
.+.+++.+|+.+++++|++++|+|+.+.. .+.|. ..+|.+++..+..|+
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f~d~-~v~h~~~~~dp~~d~~~i~~EL 151 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAFEDE-DITHVEGEIDPVRDLEIISSEL 151 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCCCCC-CccccCCCCCHHHHHHHHHHHH
Confidence 88899999999999999999999986421 11111 234555555444443
No 175
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=4.6e-17 Score=169.35 Aligned_cols=167 Identities=26% Similarity=0.395 Sum_probs=113.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc-ccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~-~~~~~~~~~~~~~~ 502 (654)
..|+++|.+|+|||||+|++++..... +..+.+|.....+....++ .++.+|||||+.+.... ...+...+..++..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-ceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 468999999999999999999987754 4567677766655555444 48999999998664421 12234455677889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh-HHHHHHHHHHHHhhHhhhcc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA-QEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~ 581 (654)
+|++++|+|++.. +. +....+.+.+. ..+.|+++|+||+|+... .+....+ +.+.+ .
T Consensus 85 ~D~il~vvd~~~~---~~-------~~~~~i~~~l~-----~~~~pvilVlNKiDl~~~~~~l~~~~-~~l~~---~--- 142 (292)
T PRK00089 85 VDLVLFVVDADEK---IG-------PGDEFILEKLK-----KVKTPVILVLNKIDLVKDKEELLPLL-EELSE---L--- 142 (292)
T ss_pred CCEEEEEEeCCCC---CC-------hhHHHHHHHHh-----hcCCCEEEEEECCcCCCCHHHHHHHH-HHHHh---h---
Confidence 9999999999831 11 11112222221 236899999999999843 3322222 22221 1
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAE 625 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~ 625 (654)
..+.++|++||++|. |+++|++.+.+.+....+
T Consensus 143 ----------~~~~~i~~iSA~~~~-gv~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 143 ----------MDFAEIVPISALKGD-NVDELLDVIAKYLPEGPP 175 (292)
T ss_pred ----------CCCCeEEEecCCCCC-CHHHHHHHHHHhCCCCCC
Confidence 234578999999999 999999999988765443
No 176
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.2e-16 Score=154.49 Aligned_cols=167 Identities=20% Similarity=0.187 Sum_probs=109.1
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|.+|+|||||++++.+..+.. ..| |..+....+.+++ .++.+|||||+. .+...+..+++.+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~-~~~~~~D~~G~~-------~~~~~~~~~~~~a 85 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQP--TQHPTSEELAIGN-IKFTTFDLGGHQ-------QARRLWKDYFPEV 85 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccccceEEEEECC-EEEEEEECCCCH-------HHHHHHHHHhCCC
Confidence 3689999999999999999999865432 222 4445556666665 479999999953 3445566889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ ++.+++....+..++... ....+.|++||+||+|+..... .+++.+.+. +.+....+
T Consensus 86 d~ii~vvD~~---------~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~-~~~i~~~l~-l~~~~~~~- 152 (184)
T smart00178 86 NGIVYLVDAY---------DKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAAS-EDELRYALG-LTNTTGSK- 152 (184)
T ss_pred CEEEEEEECC---------cHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCC-HHHHHHHcC-CCcccccc-
Confidence 9999999998 445555555444433211 1224789999999999864311 112222221 11100000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+....+...+|++||++|+ |++++++.|.+.
T Consensus 153 ----~~~~~~~~~i~~~Sa~~~~-g~~~~~~wl~~~ 183 (184)
T smart00178 153 ----GKVGVRPLEVFMCSVVRRM-GYGEGFKWLSQY 183 (184)
T ss_pred ----cccCCceeEEEEeecccCC-ChHHHHHHHHhh
Confidence 0001233458999999999 999999998653
No 177
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=3.6e-16 Score=155.15 Aligned_cols=158 Identities=22% Similarity=0.141 Sum_probs=112.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|++|||||||+++++...+.....++...+.....+..+++ ..+.+|||||..++ ......+++.+
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-------~~~~~~~~~~~ 82 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-------GGLRDGYYIKG 82 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh-------hhhhHHHhccC
Confidence 58999999999999999887766554444454444444444444432 37899999996443 33344678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|||++ ++.++..+..|..++... ..+.|+++|+||+|+.+.. +..+..+ +..
T Consensus 83 ~~~i~v~d~~---------~~~s~~~~~~~~~~i~~~---~~~~~i~lv~nK~Dl~~~~-~~~~~~~-~~~--------- 139 (215)
T PTZ00132 83 QCAIIMFDVT---------SRITYKNVPNWHRDIVRV---CENIPIVLVGNKVDVKDRQ-VKARQIT-FHR--------- 139 (215)
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccCcccc-CCHHHHH-HHH---------
Confidence 9999999998 778888888888877543 2468999999999986432 1111111 111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+..++++||++|. ||+++|..|++.+-
T Consensus 140 --------~~~~~~~e~Sa~~~~-~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 140 --------KKNLQYYDISAKSNY-NFEKPFLWLARRLT 168 (215)
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHh
Confidence 112357999999999 99999999998763
No 178
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.71 E-value=5.2e-17 Score=173.67 Aligned_cols=89 Identities=47% Similarity=0.795 Sum_probs=80.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-----------------------CccEEEEecCcc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-----------------------FRKMSVADLPGL 234 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-----------------------~~~~~i~D~PGl 234 (654)
+|||||.||+|||||+|+|++..+.+++|||+|+.|+.|.+.+.. ..++.++|+||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 699999999999999999999999999999999999999876421 124789999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHHhhcccC
Q psy1086 235 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNG 266 (654)
Q Consensus 235 ~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~ 266 (654)
+++++.+.+++.+|+++++.+|++++|+|+.+
T Consensus 83 ~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 83 VPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 99999999999999999999999999999973
No 179
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.71 E-value=4.6e-17 Score=169.90 Aligned_cols=116 Identities=36% Similarity=0.622 Sum_probs=94.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc----------------cEEEEecCcccccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGAHR 240 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~----------------~~~i~D~PGl~~~~~~ 240 (654)
-+|||||.||||||||+|+|++..+.+++|||||+.|+.|.+.+.+.+ ++.++|+||++.+++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 369999999999999999999999999999999999999999887631 4899999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHhhcccCcccCCCCC--ccChHHHHHHHHHHHHHHh
Q psy1086 241 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHP--KRSCVETVLLLNKELELYK 293 (654)
Q Consensus 241 ~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~--~~~~~~~l~~~~~el~~~~ 293 (654)
+.+++.+|+.+++++|++++|+|+... -.+.|. ..+|.+++..+..|+..+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d-~~~~~~~~~~dP~~d~~~i~~EL~~~d 136 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFED-DNITHVEGKVDPIRDIETINTELILAD 136 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCcc-CCCCCCCCCCCHHHHHHHHHHHHHHhH
Confidence 899999999999999999999998632 111111 1356666666655555444
No 180
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=6.2e-17 Score=154.76 Aligned_cols=170 Identities=41% Similarity=0.668 Sum_probs=121.2
Q ss_pred EEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHHHHH
Q psy1086 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAM 260 (654)
Q Consensus 181 LVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~ 260 (654)
|+|++|||||||+++|++....+.+++++|..|..+.+.+.+...+.++|+||+.+.......+...+.+.+..++.+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987778899999999999998887346899999999876555555666677788888999999
Q ss_pred hhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-----hcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 261 IVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-----LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 261 vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-----l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
|+|+...... ....+...+.....++...... +...|.++|+||+|+................
T Consensus 81 v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~--------- 148 (176)
T cd01881 81 VVDASEDDDI---GGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELAL--------- 148 (176)
T ss_pred EEeccCCccc---cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhc---------
Confidence 9998742000 0013444444444444433322 4679999999999997655433321111100
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.....++++||+++ .+++++++.+...
T Consensus 149 --------~~~~~~~~~Sa~~~-~gl~~l~~~l~~~ 175 (176)
T cd01881 149 --------EEGAEVVPISAKTE-EGLDELIRAIYEL 175 (176)
T ss_pred --------CCCCCEEEEehhhh-cCHHHHHHHHHhh
Confidence 01136899999999 9999999887643
No 181
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=2.7e-16 Score=180.84 Aligned_cols=160 Identities=24% Similarity=0.386 Sum_probs=115.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc--chhHH-HHHHh-
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL--GMGHQ-FLRHV- 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~--~~~~~-~~~~~- 500 (654)
.+|+++|++|||||||+|++++....+.+.+++|++...+.+.+++ .++.+|||||+.+...... ...+. ...++
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~-~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc-eEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 4799999999999999999999888888899999999988888876 4799999999987643221 11222 22333
Q ss_pred -hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhh
Q psy1086 501 -ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 501 -~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 579 (654)
..+|++++|+|+++. +....+..++. ..++|+++|+||+|+.+.+.+..... ++.+.
T Consensus 83 ~~~aD~vI~VvDat~l------------er~l~l~~ql~-----e~giPvIvVlNK~Dl~~~~~i~id~~----~L~~~- 140 (772)
T PRK09554 83 SGDADLLINVVDASNL------------ERNLYLTLQLL-----ELGIPCIVALNMLDIAEKQNIRIDID----ALSAR- 140 (772)
T ss_pred ccCCCEEEEEecCCcc------------hhhHHHHHHHH-----HcCCCEEEEEEchhhhhccCcHHHHH----HHHHH-
Confidence 379999999999832 11122333332 23689999999999875544332222 22221
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.+.|++++||++|+ |++++++.+.+..+
T Consensus 141 -------------LG~pVvpiSA~~g~-GIdeL~~~I~~~~~ 168 (772)
T PRK09554 141 -------------LGCPVIPLVSTRGR-GIEALKLAIDRHQA 168 (772)
T ss_pred -------------hCCCEEEEEeecCC-CHHHHHHHHHHhhh
Confidence 13479999999999 99999999987654
No 182
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.70 E-value=3.9e-16 Score=155.36 Aligned_cols=172 Identities=33% Similarity=0.573 Sum_probs=130.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+++++|.+++|||||++.|++......+++|||..+..+.+.|++. ++|++|+||+.+..+...+.+.+++..+|.|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga-~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGA-QIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCc-eEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 368999999999999999999999888899999999999999999996 8999999999999998888888899999999
Q ss_pred cEEEEEEeCCCccc------------CC------------------------CCCccchHHHHHHHHHHHHHh-------
Q psy1086 504 KLIAMIVDVNGFQL------------GL------------------------KHPKRSCVETVLLLNKELELY------- 540 (654)
Q Consensus 504 ~~~ilV~D~~~~~~------------~~------------------------~~~~~~~~e~~~~~~~~l~~~------- 540 (654)
|.+++|+|+..... ++ ...+.-..+.+..+..++..+
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999983221 00 000111123344444433221
Q ss_pred ------------hcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCC
Q psy1086 541 ------------KMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD 608 (654)
Q Consensus 541 ------------~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~g 608 (654)
.....=+|.+.|.||+|+.....+ . .+.+ . .+++++||+++. |
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~-~----~l~~---~----------------~~~v~isa~~~~-n 276 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEEL-E----RLAR---K----------------PNSVPISAKKGI-N 276 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHH-H----HHHh---c----------------cceEEEecccCC-C
Confidence 111123799999999999873221 1 1111 1 147999999999 9
Q ss_pred hHHHHHHHHHHHH
Q psy1086 609 VNDAKLKIRSILD 621 (654)
Q Consensus 609 v~el~~~i~~~~~ 621 (654)
+++|.+.|.+.+.
T Consensus 277 ld~L~e~i~~~L~ 289 (365)
T COG1163 277 LDELKERIWDVLG 289 (365)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998874
No 183
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.70 E-value=4.2e-17 Score=165.24 Aligned_cols=114 Identities=38% Similarity=0.684 Sum_probs=95.7
Q ss_pred EEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc----------------cEEEEecCcccccccccc
Q psy1086 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGAHRNL 242 (654)
Q Consensus 179 VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~----------------~~~i~D~PGl~~~~~~~~ 242 (654)
|||||.||||||||+|+|++..+.+++|||||+.|..|.+.+.+.+ ++.++|+||++.+++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 6899999999999999999999999999999999999999987642 489999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhcccCcccCCCCC--ccChHHHHHHHHHHHHHHh
Q psy1086 243 GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHP--KRSCVETVLLLNKELELYK 293 (654)
Q Consensus 243 ~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~--~~~~~~~l~~~~~el~~~~ 293 (654)
+++.+|+.+++++|++++|+|+.+.. .+.|. ..+|+.++..++.|+..+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~-~~~~~~~~~dp~~d~~~i~~El~~~d 132 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDD-DITHVEGSVDPVRDIEIINTELILAD 132 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCC-CccCCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999986421 11121 1357777777777766665
No 184
>KOG1191|consensus
Probab=99.70 E-value=2.2e-16 Score=164.95 Aligned_cols=179 Identities=21% Similarity=0.254 Sum_probs=118.3
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCC-CCccccchh-HHHHH
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIE-GAHRNLGMG-HQFLR 498 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~-~~~~~~~~~-~~~~~ 498 (654)
+.+.+|+++|++|+|||||+|.|...+..+ ++.|+||+|.....++++| .++.+.||||+.+ .....+.++ ....+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G-~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG-VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC-eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 456799999999999999999999998876 5689999999999999988 5899999999988 332233232 34457
Q ss_pred HhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHH----hhcccCCCCEEEEEeCCCccCh-HHHHHHHHHHHH
Q psy1086 499 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELEL----YKMNLLEKPIILLVNKMDVEGA-QEIYDGIRDTLH 573 (654)
Q Consensus 499 ~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~----~~~~~~~~p~iiv~NK~Dl~~~-~~v~~~~~~~~~ 573 (654)
.+..||++++|+|+... ..+++-. +......... ..+.....|++++.||.|+... ++......
T Consensus 345 ~~~~advi~~vvda~~~---~t~sd~~----i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~---- 413 (531)
T KOG1191|consen 345 RIERADVILLVVDAEES---DTESDLK----IARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPV---- 413 (531)
T ss_pred HHhhcCEEEEEeccccc---ccccchH----HHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCce----
Confidence 78899999999999411 1111111 1111111110 1112234799999999998654 11110000
Q ss_pred hhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 574 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
-+.... -...+..+.++|++|++ +++.|...+.+.+...
T Consensus 414 ---~~~~~~-------~~~~~~i~~~vs~~tke-g~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 414 ---VYPSAE-------GRSVFPIVVEVSCTTKE-GCERLSTALLNIVERL 452 (531)
T ss_pred ---eccccc-------cCcccceEEEeeechhh-hHHHHHHHHHHHHHHh
Confidence 000000 00122345679999999 9999999998887643
No 185
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=4.4e-16 Score=148.70 Aligned_cols=158 Identities=24% Similarity=0.249 Sum_probs=103.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|++|+|||||++++.+..+.. ..+ |.......+.+++ ..+.+|||||.. .+...+..+++.+|
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~--t~g~~~~~i~~~~-~~~~~~D~~G~~-------~~~~~~~~~~~~~~ 83 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH-ITP--TQGFNIKTVQSDG-FKLNVWDIGGQR-------AIRPYWRNYFENTD 83 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc-cCC--CCCcceEEEEECC-EEEEEEECCCCH-------HHHHHHHHHhcCCC
Confidence 589999999999999999999864421 222 2233344566665 479999999953 34555667889999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ +..++.....+...+... ....++|+++++||+|+.+..... ++.+.+. +.+.
T Consensus 84 ~ii~v~D~~---------~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~-~i~~~l~-~~~~------ 145 (173)
T cd04155 84 CLIYVIDSA---------DKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAAPAE-EIAEALN-LHDL------ 145 (173)
T ss_pred EEEEEEeCC---------CHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCCCHH-HHHHHcC-Cccc------
Confidence 999999998 344454444443333211 122468999999999986542211 1111111 1000
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.....+++++||++|+ |++++|+.|++
T Consensus 146 ------~~~~~~~~~~Sa~~~~-gi~~~~~~l~~ 172 (173)
T cd04155 146 ------RDRTWHIQACSAKTGE-GLQEGMNWVCK 172 (173)
T ss_pred ------CCCeEEEEEeECCCCC-CHHHHHHHHhc
Confidence 0122357899999999 99999999875
No 186
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.69 E-value=5e-16 Score=150.72 Aligned_cols=164 Identities=24% Similarity=0.339 Sum_probs=108.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCcc------------------CCCcccccceeEEEE--eCCCceEEEEecCCCC
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIA------------------SYPFTTIKPNVGVIT--FDDFRKMSVADLPGLI 483 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~------------------~~~~~t~~~~~~~v~--~~~~~~~~i~DTpG~~ 483 (654)
..+|+++|+.++|||||+.+|+....... ...+.|.+.....+. ..+ ..+.++||||
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~-~~i~~iDtPG-- 79 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN-RKITLIDTPG-- 79 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS-EEEEEEEESS--
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc-cceeeccccc--
Confidence 35899999999999999999987543211 134566666666666 555 5899999999
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE 563 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~ 563 (654)
+..+...+...++.+|++++|+|+... +. ....+ ....+ ...+.|+|+|+||+|+... +
T Consensus 80 -----~~~f~~~~~~~~~~~D~ailvVda~~g---~~---~~~~~----~l~~~-----~~~~~p~ivvlNK~D~~~~-~ 138 (188)
T PF00009_consen 80 -----HEDFIKEMIRGLRQADIAILVVDANDG---IQ---PQTEE----HLKIL-----RELGIPIIVVLNKMDLIEK-E 138 (188)
T ss_dssp -----SHHHHHHHHHHHTTSSEEEEEEETTTB---ST---HHHHH----HHHHH-----HHTT-SEEEEEETCTSSHH-H
T ss_pred -----ccceeecccceecccccceeeeecccc---cc---ccccc----ccccc-----cccccceEEeeeeccchhh-h
Confidence 445677778889999999999999842 11 11111 11212 1247899999999999822 2
Q ss_pred HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 564 IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+...+....+.+..... .....|++++||++|. |+++|++.|.+.+
T Consensus 139 ~~~~~~~~~~~l~~~~~~~--------~~~~~~vi~~Sa~~g~-gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 139 LEEIIEEIKEKLLKEYGEN--------GEEIVPVIPISALTGD-GIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHHHHHTTST--------TTSTEEEEEEBTTTTB-THHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccccC--------ccccceEEEEecCCCC-CHHHHHHHHHHhC
Confidence 2222222111221111000 0024689999999999 9999999998754
No 187
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.68 E-value=1.5e-15 Score=148.37 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=95.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC------CceEEEEecCCCCCCCccccchhHHHHHH
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD------FRKMSVADLPGLIEGAHRNLGMGHQFLRH 499 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~------~~~~~i~DTpG~~~~~~~~~~~~~~~~~~ 499 (654)
||+++|.++||||||++++++..+.....++++.+.....+.++. ...+.+|||+|..+ +......+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-------~~~l~~~~ 74 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-------VKSTRAVF 74 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-------HHHHHHHH
Confidence 799999999999999999999877665566665556556666642 12689999999644 44455678
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc-----------------ccCCCCEEEEEeCCCccChH
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-----------------NLLEKPIILLVNKMDVEGAQ 562 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~-----------------~~~~~p~iiv~NK~Dl~~~~ 562 (654)
++.+|++++|||++ ++++++.+..|..++..... ...+.|+|||+||+|+.+.+
T Consensus 75 yr~ad~iIlVyDvt---------n~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 75 YNQVNGIILVHDLT---------NRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred hCcCCEEEEEEECc---------ChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 99999999999999 88999999999998865321 12468999999999997654
Q ss_pred HH
Q psy1086 563 EI 564 (654)
Q Consensus 563 ~v 564 (654)
.+
T Consensus 146 ~~ 147 (202)
T cd04102 146 ES 147 (202)
T ss_pred cc
Confidence 33
No 188
>KOG1423|consensus
Probab=99.68 E-value=1.2e-16 Score=157.10 Aligned_cols=191 Identities=20% Similarity=0.250 Sum_probs=128.1
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc-----chhHHH
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-----GMGHQF 496 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~-----~~~~~~ 496 (654)
+..+|++||.+|+|||||.|.+.+...+.. ....||+....+.+.-+. .++.++||||+........ .+-...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 346899999999999999999999988764 467777777777777665 5899999999987654321 122345
Q ss_pred HHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHH---
Q psy1086 497 LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH--- 573 (654)
Q Consensus 497 ~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~--- 573 (654)
+..+..||++++|+|+++.. ...+.. +... +..+ .++|.|+|.||+|.+..+.+.-...+.+.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr------~~l~p~-vl~~---l~~y----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~ 215 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATR------TPLHPR-VLHM---LEEY----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGE 215 (379)
T ss_pred HHHHhhCCEEEEEEeccCCc------CccChH-HHHH---HHHH----hcCCceeeccchhcchhhhHHhhhHHhccccc
Confidence 67788999999999998421 111111 1111 2222 36899999999998876543322222221
Q ss_pred ------hhHhhhccCCCCCCc---cccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHhhH
Q psy1086 574 ------NLKDHIHKYPEEFQP---EKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQE 629 (654)
Q Consensus 574 ------~~~~~~~~~~~~~~~---~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~~~ 629 (654)
++++.....++..++ ..+.+|..+|++||++|+ ||++|-+.+......+.|.|+.
T Consensus 216 l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~-GikdlkqyLmsqa~~gpW~y~a 279 (379)
T KOG1423|consen 216 LAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE-GIKDLKQYLMSQAPPGPWKYPA 279 (379)
T ss_pred cchhhhhHHHHhccCCcccccccccCcccceeEEEEeccccc-CHHHHHHHHHhcCCCCCCCCCc
Confidence 122211111110000 124567789999999999 9999999999999888887643
No 189
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.68 E-value=1.3e-15 Score=147.24 Aligned_cols=167 Identities=22% Similarity=0.255 Sum_probs=106.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccC----------------CCcccccceeEEEEeCCCceEEEEecCCCCCCCccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIAS----------------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN 489 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~----------------~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~ 489 (654)
+|+++|.+|+|||||++.+++....... ..++|.......+.+.. ..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD-RRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC-EEEEEEeCCCcHH-----
Confidence 4789999999999999999987664432 23344555555555554 4799999999543
Q ss_pred cchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHH
Q psy1086 490 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIR 569 (654)
Q Consensus 490 ~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~ 569 (654)
+...+..+++.+|++++|+|++.. ...+.. .+...+. ..+.|+++|+||+|+...........
T Consensus 75 --~~~~~~~~~~~~d~~i~v~d~~~~---------~~~~~~-~~~~~~~-----~~~~~i~iv~nK~D~~~~~~~~~~~~ 137 (189)
T cd00881 75 --FSSEVIRGLSVSDGAILVVDANEG---------VQPQTR-EHLRIAR-----EGGLPIIVAINKIDRVGEEDLEEVLR 137 (189)
T ss_pred --HHHHHHHHHHhcCEEEEEEECCCC---------CcHHHH-HHHHHHH-----HCCCCeEEEEECCCCcchhcHHHHHH
Confidence 445667888999999999999832 111111 1222221 14789999999999986332222111
Q ss_pred HHHHhhHhhhccCCCCC---CccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 570 DTLHNLKDHIHKYPEEF---QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 570 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+.+.++..+..+ .........++|++||++|. |++++++.+.+.+
T Consensus 138 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~-gi~~l~~~l~~~l 186 (189)
T cd00881 138 ----EIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGI-GVEELLEAIVEHL 186 (189)
T ss_pred ----HHHHHHccccccchhhhhcccCCcceEEEEecccCc-CHHHHHHHHHhhC
Confidence 1112221111000 00001245679999999999 9999999987754
No 190
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=4.2e-16 Score=146.71 Aligned_cols=146 Identities=17% Similarity=0.188 Sum_probs=95.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
+|+++|.+|+|||||++++.+.... ......+.+... .+|||||+.... ..+.......++.||+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~---------~~~~~~v~~~~~---~~iDtpG~~~~~---~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL---------ARKTQAVEFNDK---GDIDTPGEYFSH---PRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc---------CccceEEEECCC---CcccCCccccCC---HHHHHHHHHHHhcCCE
Confidence 7999999999999999999875321 123344455542 379999975332 1233344456889999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|+|++.. .++ +..|..++ ..+.|+++++||+|+.+.. ...+.+.+.+ .
T Consensus 68 il~v~d~~~~---------~s~--~~~~~~~~------~~~~~ii~v~nK~Dl~~~~--~~~~~~~~~~----~------ 118 (158)
T PRK15467 68 LIYVHGANDP---------ESR--LPAGLLDI------GVSKRQIAVISKTDMPDAD--VAATRKLLLE----T------ 118 (158)
T ss_pred EEEEEeCCCc---------ccc--cCHHHHhc------cCCCCeEEEEEccccCccc--HHHHHHHHHH----c------
Confidence 9999999832 221 11122211 1357999999999986532 1111211111 0
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....|+|++||++|+ ||++||+.+++.+..
T Consensus 119 ------~~~~p~~~~Sa~~g~-gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 119 ------GFEEPIFELNSHDPQ-SVQQLVDYLASLTKQ 148 (158)
T ss_pred ------CCCCCEEEEECCCcc-CHHHHHHHHHHhchh
Confidence 011479999999999 999999999988854
No 191
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.68 E-value=1.5e-15 Score=141.37 Aligned_cols=157 Identities=25% Similarity=0.218 Sum_probs=108.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|+|||||++++.+........++++.+.....+.+++. ..+.+|||||+.+. ...+..+.+.+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~ 74 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY-------RAIRRLYYRAV 74 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc-------hHHHHHHHhhh
Confidence 48999999999999999999998855566778888887776777652 36889999995443 33344567788
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+.++.++|..... .+++... .|...+.... ..+.|+++|+||+|+.... ........+..
T Consensus 75 ~~~i~~~d~~~~v--------~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~-------- 135 (161)
T TIGR00231 75 ESSLRVFDIVILV--------LDVEEILEKQTKEIIHHA--ESNVPIILVGNKIDLRDAK-LKTHVAFLFAK-------- 135 (161)
T ss_pred hEEEEEEEEeeee--------hhhhhHhHHHHHHHHHhc--ccCCcEEEEEEcccCCcch-hhHHHHHHHhh--------
Confidence 9999999987331 1222222 3433333222 1278999999999997643 22222222222
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 617 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~ 617 (654)
....+++++||++|. |+.++|+.|.
T Consensus 136 ---------~~~~~~~~~sa~~~~-gv~~~~~~l~ 160 (161)
T TIGR00231 136 ---------LNGEPIIPLSAETGK-NIDSAFKIVE 160 (161)
T ss_pred ---------ccCCceEEeecCCCC-CHHHHHHHhh
Confidence 223468999999999 9999999864
No 192
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=9e-16 Score=171.77 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=111.9
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+.++|+++|+.++|||||+++|.+..+.....+++|.+.....+.+++...+.+|||||+.+ +..++.++++.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~-------F~~~r~rga~~ 158 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA-------FTSMRARGAKV 158 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcc-------hhhHHHhhhcc
Confidence 44789999999999999999999987766667788888777777776544799999999544 44555678899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh--HHHHHHHHHHHHhhHhhhc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA--QEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~ 580 (654)
+|++++|+|+++. . ..++.+.+. .. ...+.|+|+++||+|+.+. ..+..+ +.+..
T Consensus 159 aDiaILVVda~dg---v---~~qT~e~i~----~~-----~~~~vPiIVviNKiDl~~~~~e~v~~~----L~~~g---- 215 (587)
T TIGR00487 159 TDIVVLVVAADDG---V---MPQTIEAIS----HA-----KAANVPIIVAINKIDKPEANPDRVKQE----LSEYG---- 215 (587)
T ss_pred CCEEEEEEECCCC---C---CHhHHHHHH----HH-----HHcCCCEEEEEECcccccCCHHHHHHH----HHHhh----
Confidence 9999999999832 1 222332221 11 1246899999999998642 222222 21110
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
+.+..+....+++++||++|+ ||++||+.+..
T Consensus 216 -----~~~~~~~~~~~~v~iSAktGe-GI~eLl~~I~~ 247 (587)
T TIGR00487 216 -----LVPEDWGGDTIFVPVSALTGD-GIDELLDMILL 247 (587)
T ss_pred -----hhHHhcCCCceEEEEECCCCC-ChHHHHHhhhh
Confidence 000111223468999999999 99999999874
No 193
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=1.4e-15 Score=157.98 Aligned_cols=88 Identities=47% Similarity=0.761 Sum_probs=76.5
Q ss_pred EEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC---------------------CC--ceEEEEecCCCC
Q psy1086 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD---------------------DF--RKMSVADLPGLI 483 (654)
Q Consensus 427 v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~---------------------~~--~~~~i~DTpG~~ 483 (654)
|+++|.+|+|||||+|++++....+.++|++|.++..+...+. +. ..+++|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5789999999999999999988877889999999998776651 11 268999999998
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCC
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNG 514 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~ 514 (654)
+..+...+++..++.+++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 8877777788999999999999999999984
No 194
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=6.4e-16 Score=151.01 Aligned_cols=178 Identities=18% Similarity=0.211 Sum_probs=125.2
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccC--CCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHH----HHH
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIAS--YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQF----LRH 499 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~--~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~----~~~ 499 (654)
+|+++|.+|+||||++|.+++...+... .++.|..+......+++ +++.++||||+.+............ ..+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~-~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG-RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC-eEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 7899999999999999999998776654 46788888888877876 5899999999987653322233222 233
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhh
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 579 (654)
.+++|++++|+|+.. +++.+...++.+..++. .....++|+|+|++|......+.+.+.+.-..+++.+
T Consensus 81 ~~g~~~illVi~~~~----~t~~d~~~l~~l~~~fg-------~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~ 149 (196)
T cd01852 81 APGPHAFLLVVPLGR----FTEEEEQAVETLQELFG-------EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL 149 (196)
T ss_pred CCCCEEEEEEEECCC----cCHHHHHHHHHHHHHhC-------hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHH
Confidence 467899999999974 23333333322222211 1123689999999998766666666665556788888
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+.|+.+| ..+-..++ |+..+. ++.+|++.|.+++.+
T Consensus 150 ~~c~~r~-----~~f~~~~~-~~~~~~-q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 150 EKCGGRY-----VAFNNKAK-GEEQEQ-QVKELLAKVESMVKE 185 (196)
T ss_pred HHhCCeE-----EEEeCCCC-cchhHH-HHHHHHHHHHHHHHh
Confidence 8888877 11112223 467777 999999999999987
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=1.1e-15 Score=168.21 Aligned_cols=156 Identities=25% Similarity=0.306 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc-cccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~-~~~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|||||||+|+|++.... ....+++|.+.....+.+++ ..+.+|||||+..... ....+...+..+++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-REFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-cEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 47999999999999999999987653 46688999999999999987 5899999999876322 112245556778999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
||++++|+|++.. ++. ..+.+ .+++.. .+.|+|+|+||+|+.+... .. .++..
T Consensus 81 ad~il~vvd~~~~---~~~----~~~~~---~~~l~~-----~~~piilv~NK~D~~~~~~---~~----~~~~~----- 133 (435)
T PRK00093 81 ADVILFVVDGRAG---LTP----ADEEI---AKILRK-----SNKPVILVVNKVDGPDEEA---DA----YEFYS----- 133 (435)
T ss_pred CCEEEEEEECCCC---CCH----HHHHH---HHHHHH-----cCCcEEEEEECccCccchh---hH----HHHHh-----
Confidence 9999999999831 111 11112 222221 3689999999999754211 11 11111
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
..+..++++||++|. |++++|+.+.+
T Consensus 134 ---------lg~~~~~~iSa~~g~-gv~~l~~~I~~ 159 (435)
T PRK00093 134 ---------LGLGEPYPISAEHGR-GIGDLLDAILE 159 (435)
T ss_pred ---------cCCCCCEEEEeeCCC-CHHHHHHHHHh
Confidence 111237899999999 99999999987
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.67 E-value=1.9e-15 Score=140.83 Aligned_cols=161 Identities=24% Similarity=0.250 Sum_probs=112.2
Q ss_pred EEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEE
Q psy1086 429 LVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIA 507 (654)
Q Consensus 429 ~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~i 507 (654)
++|..|+||||+++.+.+.... ....+++|...............+.+|||||+.+...........+..+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 4799999999999999987665 456677777777766666534579999999988766544433355667889999999
Q ss_pred EEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCC
Q psy1086 508 MIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQ 587 (654)
Q Consensus 508 lV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 587 (654)
+|+|++.. ....... +.... ...+.|+++|+||+|+............ .....
T Consensus 81 ~v~~~~~~---------~~~~~~~-~~~~~-----~~~~~~~ivv~nK~D~~~~~~~~~~~~~-~~~~~----------- 133 (163)
T cd00880 81 FVVDADLR---------ADEEEEK-LLELL-----RERGKPVLLVLNKIDLLPEEEEEELLEL-RLLIL----------- 133 (163)
T ss_pred EEEeCCCC---------CCHHHHH-HHHHH-----HhcCCeEEEEEEccccCChhhHHHHHHH-HHhhc-----------
Confidence 99999842 2222211 22222 2247899999999999876543332210 00000
Q ss_pred ccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 588 PEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 588 ~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
......++|++||+++. |++++++.+.+.
T Consensus 134 --~~~~~~~~~~~sa~~~~-~v~~l~~~l~~~ 162 (163)
T cd00880 134 --LLLLGLPVIAVSALTGE-GIDELREALIEA 162 (163)
T ss_pred --ccccCCceEEEeeeccC-CHHHHHHHHHhh
Confidence 11345679999999999 999999998764
No 197
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=8.6e-16 Score=168.69 Aligned_cols=158 Identities=25% Similarity=0.339 Sum_probs=115.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc-cccchhHHHHHHhhcc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVERT 503 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~-~~~~~~~~~~~~~~~a 503 (654)
+|+++|.+|||||||+|+|++.... ....+++|++.....+.+++ ..+.+|||||+..... ....+..++..+++.|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-REFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 4899999999999999999997653 45689999999999999987 4799999999854321 1234556777889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++.. ++. .. ..+..++.. .++|+++|+||+|+........ .+..
T Consensus 80 d~vl~vvD~~~~---~~~------~d-~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~~----~~~~--------- 131 (429)
T TIGR03594 80 DVILFVVDGREG---LTP------ED-EEIAKWLRK-----SGKPVILVANKIDGKKEDAVAA----EFYS--------- 131 (429)
T ss_pred CEEEEEEeCCCC---CCH------HH-HHHHHHHHH-----hCCCEEEEEECccCCcccccHH----HHHh---------
Confidence 999999999831 111 11 122233321 3689999999999875432111 1111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+.++|++||++|. |++++++.+.+.+.
T Consensus 132 --------lg~~~~~~vSa~~g~-gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 132 --------LGFGEPIPISAEHGR-GIGDLLDAILELLP 160 (429)
T ss_pred --------cCCCCeEEEeCCcCC-ChHHHHHHHHHhcC
Confidence 122358999999999 99999999987764
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.67 E-value=3.2e-16 Score=156.91 Aligned_cols=171 Identities=29% Similarity=0.455 Sum_probs=121.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
++|+|+|+||||||||+++|++..+.+++|||+|..|..|.+.+.+ ..+.++|+||+.+.+....++..+++..++.++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG-AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC-eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 4799999999999999999999999999999999999999998877 479999999998877666667777788888888
Q ss_pred HHHHhhcccCcc---------c-------CC--------------------CCCccChHHHHHHHHHHHH----------
Q psy1086 257 LIAMIVDVNGFQ---------L-------GL--------------------KHPKRSCVETVLLLNKELE---------- 290 (654)
Q Consensus 257 ~il~vvd~~~~~---------l-------~~--------------------~~~~~~~~~~l~~~~~el~---------- 290 (654)
++++|+|+.... + .. ........+....+.++..
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 888888875321 0 00 0000011122222222211
Q ss_pred ---------HHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccch
Q psy1086 291 ---------LYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDV 361 (654)
Q Consensus 291 ---------~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i 361 (654)
.+..+....|.++|+||+|+...++.. .+... ..++++||+++ .++
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~----~~~~~--------------------~~~~~~SA~~g-~gi 214 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD----LLARQ--------------------PNSVVISAEKG-LNL 214 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH----HHhcC--------------------CCEEEEcCCCC-CCH
Confidence 112234567999999999987554322 11110 14788999999 999
Q ss_pred HHHHHHHHHHHH
Q psy1086 362 NDAKLKIRSILD 373 (654)
Q Consensus 362 ~~L~~~i~~~l~ 373 (654)
+++++.+.+.+.
T Consensus 215 ~~l~~~i~~~L~ 226 (233)
T cd01896 215 DELKERIWDKLG 226 (233)
T ss_pred HHHHHHHHHHhC
Confidence 999999987654
No 199
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.67 E-value=2.8e-16 Score=161.30 Aligned_cols=162 Identities=25% Similarity=0.302 Sum_probs=113.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCcccccccc-cccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~-~~~l~~~~l~~i~~~ 255 (654)
+|+|+|+||||||||+|+|+|.+.. ++++|.||..+..|....++ .++.++||||+.+..+. ...+...+...+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998764 57889999998888766555 57999999998754221 122334456677888
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
|++++|+|++.. ... . ..+...+ . . ...|.++|+||+|+.........+.+....
T Consensus 81 Dvvl~VvD~~~~--------~~~-~--~~i~~~l---~-~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--------- 135 (270)
T TIGR00436 81 DLILFVVDSDQW--------NGD-G--EFVLTKL---Q-N-LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL--------- 135 (270)
T ss_pred CEEEEEEECCCC--------Cch-H--HHHHHHH---H-h-cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---------
Confidence 999999998732 111 1 1111111 1 1 468999999999997554433333222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+.+++++||+++ .|++++++.+.+.++.
T Consensus 136 --------~~~~~v~~iSA~~g-~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 136 --------EDFKDIVPISALTG-DNTSFLAAFIEVHLPE 165 (270)
T ss_pred --------cCCCceEEEecCCC-CCHHHHHHHHHHhCCC
Confidence 12236899999999 9999999999887654
No 200
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1e-15 Score=175.07 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=90.5
Q ss_pred EEEEeccCcCCCCCCCCcccccceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC
Q psy1086 143 SIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD 222 (654)
Q Consensus 143 ~~~~a~Gg~gg~gn~~f~g~~Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~ 222 (654)
.+.+.+|++..+. +++|.+..|.++||||+|||||||||++|+|. ..|..|.|.+++
T Consensus 6 nls~~~g~~~~l~------------~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~-----------~~pd~G~I~~~~ 62 (638)
T PRK10636 6 SLQIRRGVRVLLD------------NATATINPGQKVGLVGKNGCGKSTLLALLKNE-----------ISADGGSYTFPG 62 (638)
T ss_pred EEEEEeCCceeec------------CcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecC
Confidence 4556666654444 45555555558999999999999999999993 567788887765
Q ss_pred CccEEEE--ecCccccc----ccccccchH----------------HHH---HHHH------HHHHHHHhhcccCcccCC
Q psy1086 223 FRKMSVA--DLPGLIEG----AHRNLGMGH----------------QFL---RHVE------RTKLIAMIVDVNGFQLGL 271 (654)
Q Consensus 223 ~~~~~i~--D~PGl~~~----~~~~~~l~~----------------~~l---~~i~------~~~~il~vvd~~~~~l~~ 271 (654)
...+... +.|..... ......... .+. .... ....+..+++.. .+
T Consensus 63 ~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l----gl 138 (638)
T PRK10636 63 NWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL----GF 138 (638)
T ss_pred CCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CC
Confidence 4222111 11111000 000000000 000 0000 000111112211 12
Q ss_pred C-CCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHH
Q psy1086 272 K-HPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 272 ~-~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~ 322 (654)
. +..+.++..+|++++++..++..|+..|.++++ |++|.....++.+.+.+
T Consensus 139 ~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~ 194 (638)
T PRK10636 139 SNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS 194 (638)
T ss_pred CchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 2 234678899999999999999999999999999 99999887776555544
No 201
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=1.4e-15 Score=174.07 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=114.1
Q ss_pred ecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh
Q psy1086 421 LKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV 500 (654)
Q Consensus 421 ~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~ 500 (654)
..+.+.|+++|+.++|||||+++|.+..+.....+++|.+.....+.+++ ..+.+|||||+.+ |..++.+++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~-~~ItfiDTPGhe~-------F~~m~~rga 358 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG-GKITFLDTPGHEA-------FTAMRARGA 358 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC-EEEEEEECCCCcc-------chhHHHhhh
Confidence 34668999999999999999999998776656677788777777788876 5899999999644 455566788
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh--HHHHHHHHHHHHhhHhh
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA--QEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~--~~v~~~~~~~~~~~~~~ 578 (654)
+.+|++++|||+++. + ..++.+.+. .. ...+.|+|||+||+|+.+. ..+..++. +. +
T Consensus 359 ~~aDiaILVVdAddG---v---~~qT~e~i~----~a-----~~~~vPiIVviNKiDl~~a~~e~V~~eL~----~~-~- 417 (787)
T PRK05306 359 QVTDIVVLVVAADDG---V---MPQTIEAIN----HA-----KAAGVPIIVAINKIDKPGANPDRVKQELS----EY-G- 417 (787)
T ss_pred hhCCEEEEEEECCCC---C---CHhHHHHHH----HH-----HhcCCcEEEEEECccccccCHHHHHHHHH----Hh-c-
Confidence 999999999999842 1 122222221 11 1247899999999999653 22222221 11 0
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+.++.+....++|++||++|+ ||++||+.|...
T Consensus 418 -------~~~e~~g~~vp~vpvSAktG~-GI~eLle~I~~~ 450 (787)
T PRK05306 418 -------LVPEEWGGDTIFVPVSAKTGE-GIDELLEAILLQ 450 (787)
T ss_pred -------ccHHHhCCCceEEEEeCCCCC-CchHHHHhhhhh
Confidence 001111233579999999999 999999998753
No 202
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.66 E-value=2.9e-15 Score=141.11 Aligned_cols=162 Identities=26% Similarity=0.335 Sum_probs=104.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc-cchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN-LGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~-~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|+||||+++++++...... ..+.++...........+ ..+.+|||||+....... ..+......+++.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-AQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-eEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999998765432 334444444443333333 478999999986554322 1233345567889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++.. + .+. ...+...+.. .+.|+++|+||+|+....+...+..+.+.. .
T Consensus 83 ~d~i~~v~d~~~~---~----~~~---~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~---- 140 (168)
T cd04163 83 VDLVLFVVDASEP---I----GEG---DEFILELLKK-----SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---L---- 140 (168)
T ss_pred CCEEEEEEECCCc---c----Cch---HHHHHHHHHH-----hCCCEEEEEEchhccccHHHHHHHHHHHHh---c----
Confidence 9999999999842 1 111 1122222221 258999999999997433222222222221 1
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
....+++++||+++. |++++++.|.+.
T Consensus 141 ---------~~~~~~~~~s~~~~~-~~~~l~~~l~~~ 167 (168)
T cd04163 141 ---------GPFAEIFPISALKGE-NVDELLEEIVKY 167 (168)
T ss_pred ---------cCCCceEEEEeccCC-ChHHHHHHHHhh
Confidence 123468999999999 999999998764
No 203
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=1.8e-15 Score=171.50 Aligned_cols=165 Identities=22% Similarity=0.296 Sum_probs=111.7
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC---CCceEEEEecCCCCCCCccccchhHHHHH
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD---DFRKMSVADLPGLIEGAHRNLGMGHQFLR 498 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~---~~~~~~i~DTpG~~~~~~~~~~~~~~~~~ 498 (654)
.+.+.|+++|+.++|||||+++|....+.....+++|.+.....+.+. ....+.+|||||+ ..+..++.+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh-------e~F~~mr~r 314 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH-------EAFSSMRSR 314 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH-------HHHHHHHHH
Confidence 456799999999999999999999877765556667766554444442 2358999999994 446667778
Q ss_pred HhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhh
Q psy1086 499 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 499 ~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 578 (654)
+++.+|++++|+|+++. . ..++++.+.. + ...+.|+|||+||+|+.... ...+.+.+... +.
T Consensus 315 g~~~aDiaILVVDA~dG---v---~~QT~E~I~~----~-----k~~~iPiIVViNKiDl~~~~--~e~v~~eL~~~-~l 376 (742)
T CHL00189 315 GANVTDIAILIIAADDG---V---KPQTIEAINY----I-----QAANVPIIVAINKIDKANAN--TERIKQQLAKY-NL 376 (742)
T ss_pred HHHHCCEEEEEEECcCC---C---ChhhHHHHHH----H-----HhcCceEEEEEECCCccccC--HHHHHHHHHHh-cc
Confidence 89999999999999842 2 1233333321 1 12468999999999997532 11111112110 00
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+ ++.+....+++++||++|. ||++||+.|....
T Consensus 377 l--------~e~~g~~vpvv~VSAktG~-GIdeLle~I~~l~ 409 (742)
T CHL00189 377 I--------PEKWGGDTPMIPISASQGT-NIDKLLETILLLA 409 (742)
T ss_pred c--------hHhhCCCceEEEEECCCCC-CHHHHHHhhhhhh
Confidence 0 0111223579999999999 9999999987764
No 204
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.66 E-value=4.8e-15 Score=144.59 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=97.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcC-CCccC---------------CCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRAR-PKIAS---------------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~-~~~~~---------------~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|..++|||||+++|+... .+... ..++|.......+.+.+ .++.+|||||+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKD-TKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECC-EEEEEEECCCcHH----
Confidence 479999999999999999999731 11111 13445555555566655 4899999999643
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH--HHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EIYD 566 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~--~v~~ 566 (654)
+...+..+++.+|++++|+|+++. .+.....+...+. ..++|++||+||+|+...+ .+.+
T Consensus 78 ---~~~~~~~~~~~~d~~ilV~d~~~~----------~~~~~~~~~~~~~-----~~~~p~iiv~NK~Dl~~~~~~~~~~ 139 (194)
T cd01891 78 ---FGGEVERVLSMVDGVLLLVDASEG----------PMPQTRFVLKKAL-----ELGLKPIVVINKIDRPDARPEEVVD 139 (194)
T ss_pred ---HHHHHHHHHHhcCEEEEEEECCCC----------ccHHHHHHHHHHH-----HcCCCEEEEEECCCCCCCCHHHHHH
Confidence 555677899999999999999831 1122222222221 1368999999999996432 2222
Q ss_pred HHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHH
Q psy1086 567 GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 613 (654)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~ 613 (654)
++.+.+..+... ......+++++||++|. |+.++-
T Consensus 140 ~~~~~~~~~~~~-----------~~~~~~~iv~~Sa~~g~-~~~~~~ 174 (194)
T cd01891 140 EVFDLFIELGAT-----------EEQLDFPVLYASAKNGW-ASLNLE 174 (194)
T ss_pred HHHHHHHHhCCc-----------cccCccCEEEeehhccc-cccccc
Confidence 222222111100 00123478999999998 876553
No 205
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=1.8e-15 Score=148.42 Aligned_cols=173 Identities=25% Similarity=0.325 Sum_probs=101.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc----ccchhHHHHHHh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR----NLGMGHQFLRHV 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~----~~~~~~~~~~~~ 500 (654)
.+|+++|.+|+|||||++++.+..+.....|++|.... .+.+. .+.+|||||+...... .+.+...+..++
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~--~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN--HYDWG---DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCce--EEeec---ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 58999999999999999999998766566777777654 33333 5899999996332211 223444444444
Q ss_pred h----cccEEEEEEeCCCcccCCCCCc--cchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHh
Q psy1086 501 E----RTKLIAMIVDVNGFQLGLKHPK--RSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHN 574 (654)
Q Consensus 501 ~----~a~~~ilV~D~~~~~~~~~~~~--~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~ 574 (654)
+ .++++++|+|.+.+.. +.+.. ......-..+...+. ..++|++||+||+|+.+... +. ..+
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-----~~~~p~iiv~NK~Dl~~~~~---~~---~~~ 152 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIE-IIERWEGRGEIPIDVEMFDFLR-----ELGIPPIVAVNKMDKIKNRD---EV---LDE 152 (201)
T ss_pred HhhhhhheEEEEEEeCccccc-cccccccCCCcHHHHHHHHHHH-----HcCCCeEEEEECccccCcHH---HH---HHH
Confidence 3 4678899999864210 00000 000000011111111 24689999999999975431 11 111
Q ss_pred hHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 575 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+.+.... ...| ...+.+++++||++| ||+++|+.|.+.+.
T Consensus 153 ~~~~~~~-~~~~----~~~~~~~~~~SA~~g--gi~~l~~~l~~~~~ 192 (201)
T PRK04213 153 IAERLGL-YPPW----RQWQDIIAPISAKKG--GIEELKEAIRKRLH 192 (201)
T ss_pred HHHHhcC-Cccc----cccCCcEEEEecccC--CHHHHHHHHHHhhc
Confidence 1111110 0000 001235899999999 99999999987653
No 206
>PLN00023 GTP-binding protein; Provisional
Probab=99.65 E-value=3e-15 Score=153.16 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=95.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC--------------CceEEEEecCCCCCCCcccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD--------------FRKMSVADLPGLIEGAHRNL 490 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~--------------~~~~~i~DTpG~~~~~~~~~ 490 (654)
.||+++|..+||||||+++|++..+.....++++.++....+.+++ ...+.||||+|+.+
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr------ 95 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER------ 95 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh------
Confidence 5899999999999999999998776555566666666666666642 12589999999654
Q ss_pred chhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc----------ccCCCCEEEEEeCCCccC
Q psy1086 491 GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM----------NLLEKPIILLVNKMDVEG 560 (654)
Q Consensus 491 ~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~----------~~~~~p~iiv~NK~Dl~~ 560 (654)
+...+..+++.++++|+|||++ ++.+++.+..|.+++..... ...+.|+|||+||+||..
T Consensus 96 -frsL~~~yyr~AdgiILVyDIT---------dr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 -YKDCRSLFYSQINGVIFVHDLS---------QRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred -hhhhhHHhccCCCEEEEEEeCC---------CHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 4445557899999999999999 78899999999998876421 013589999999999965
Q ss_pred h
Q psy1086 561 A 561 (654)
Q Consensus 561 ~ 561 (654)
.
T Consensus 166 ~ 166 (334)
T PLN00023 166 K 166 (334)
T ss_pred c
Confidence 4
No 207
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.65 E-value=2.9e-15 Score=147.11 Aligned_cols=162 Identities=22% Similarity=0.248 Sum_probs=98.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCC-C--ccCCCcccccceeEEEEeC---------------------------C-----
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARP-K--IASYPFTTIKPNVGVITFD---------------------------D----- 470 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~-~--~~~~~~~t~~~~~~~v~~~---------------------------~----- 470 (654)
+|+++|++++|||||+..+.+... . .....+.|.......+.+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999976421 0 0111122222211111111 1
Q ss_pred CceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEE
Q psy1086 471 FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 550 (654)
Q Consensus 471 ~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~i 550 (654)
..++.+|||||. +.+...+...++.+|++++|+|++... . ..++.+.+..| ... ...|+|
T Consensus 82 ~~~i~~iDtPG~-------~~~~~~~~~~~~~~D~~llVvd~~~~~--~---~~~t~~~l~~~----~~~----~~~~ii 141 (203)
T cd01888 82 VRHVSFVDCPGH-------EILMATMLSGAAVMDGALLLIAANEPC--P---QPQTSEHLAAL----EIM----GLKHII 141 (203)
T ss_pred ccEEEEEECCCh-------HHHHHHHHHhhhcCCEEEEEEECCCCC--C---CcchHHHHHHH----HHc----CCCcEE
Confidence 147999999994 446667778888999999999998310 0 12333333222 111 125799
Q ss_pred EEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 551 LLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 551 iv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
||+||+|+.+....... ++++++.+... ...+.++|++||++|. ||++||+.+.+.+
T Consensus 142 ivvNK~Dl~~~~~~~~~----~~~i~~~~~~~--------~~~~~~i~~vSA~~g~-gi~~L~~~l~~~l 198 (203)
T cd01888 142 IVQNKIDLVKEEQALEN----YEQIKKFVKGT--------IAENAPIIPISAQLKY-NIDVLLEYIVKKI 198 (203)
T ss_pred EEEEchhccCHHHHHHH----HHHHHHHHhcc--------ccCCCcEEEEeCCCCC-CHHHHHHHHHHhC
Confidence 99999999764332221 22222222110 0123579999999999 9999999998654
No 208
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.65 E-value=4.8e-16 Score=164.35 Aligned_cols=162 Identities=25% Similarity=0.332 Sum_probs=112.8
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccc-ccccccchHHHHHHHH
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG-AHRNLGMGHQFLRHVE 253 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~-~~~~~~l~~~~l~~i~ 253 (654)
.+.+|+|||.||||||||+|+|++....+.+++|+|++|....+.+.++..+.++||||++.. .+.-.......+..+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~ 267 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR 267 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence 347899999999999999999999887678999999999999999865568999999998643 2211111223445677
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
.+|++++|+|++.. .....+......+..+. ....|.++|+||+|+...... .. ...
T Consensus 268 ~ADlil~VvD~s~~---------~~~~~~~~~~~~L~~l~--~~~~piIlV~NK~Dl~~~~~v-~~----~~~------- 324 (351)
T TIGR03156 268 EADLLLHVVDASDP---------DREEQIEAVEKVLEELG--AEDIPQLLVYNKIDLLDEPRI-ER----LEE------- 324 (351)
T ss_pred hCCEEEEEEECCCC---------chHHHHHHHHHHHHHhc--cCCCCEEEEEEeecCCChHhH-HH----HHh-------
Confidence 88999999999742 11222222222222221 246899999999998653221 11 100
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
....++++||+++ .|+++|++.|.+.
T Consensus 325 -----------~~~~~i~iSAktg-~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 -----------GYPEAVFVSAKTG-EGLDLLLEAIAER 350 (351)
T ss_pred -----------CCCCEEEEEccCC-CCHHHHHHHHHhh
Confidence 0024789999999 9999999988653
No 209
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=6.4e-16 Score=154.67 Aligned_cols=160 Identities=26% Similarity=0.489 Sum_probs=106.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccccc-chHHH---HHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLG-MGHQF---LRHV 252 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~-l~~~~---l~~i 252 (654)
..|.+.|+||+|||||+++||+++|.|++|||||..-++|++.... .++.++||||+.+-..+... ...+. ++|+
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~-~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY-LRIQVIDTPGLLDRPLEERNEIERQAILALRHL 247 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC-ceEEEecCCcccCCChHHhcHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999876 48999999999876543321 22221 2332
Q ss_pred HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccc
Q psy1086 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 330 (654)
Q Consensus 253 ~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~ 330 (654)
.++++|++|.+... --+ ++.|...|.. .+...|.++|+||+|....+. .+++...+....
T Consensus 248 --~~~IlF~~D~Se~c-------gy~------lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~-~~~~~~~~~~~~-- 309 (346)
T COG1084 248 --AGVILFLFDPSETC-------GYS------LEEQISLLEEIKELFKAPIVVVINKIDIADEEK-LEEIEASVLEEG-- 309 (346)
T ss_pred --cCeEEEEEcCcccc-------CCC------HHHHHHHHHHHHHhcCCCeEEEEecccccchhH-HHHHHHHHHhhc--
Confidence 45778888887421 112 2222222221 345589999999999875443 333333322110
Q ss_pred cccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
......+++..+ .+++.+...+...
T Consensus 310 ---------------~~~~~~~~~~~~-~~~d~~~~~v~~~ 334 (346)
T COG1084 310 ---------------GEEPLKISATKG-CGLDKLREEVRKT 334 (346)
T ss_pred ---------------cccccceeeeeh-hhHHHHHHHHHHH
Confidence 012455666666 6666666555443
No 210
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=2.5e-15 Score=169.16 Aligned_cols=152 Identities=26% Similarity=0.397 Sum_probs=108.0
Q ss_pred cCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh--hcccEEEE
Q psy1086 431 GFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV--ERTKLIAM 508 (654)
Q Consensus 431 G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~--~~a~~~il 508 (654)
|++|||||||+|++.+......+.|++|.+...+.+.+++. ++.+|||||+.+....... ......++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~-~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE-DIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe-EEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence 78999999999999998877788999999999999988874 7999999999776543211 11122233 37899999
Q ss_pred EEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCc
Q psy1086 509 IVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQP 588 (654)
Q Consensus 509 V~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 588 (654)
|+|+++. ++ . ..+..++. ..++|+++|+||+|+.+.+.+..+. +.+.+ .
T Consensus 79 VvDat~l-------er----~-l~l~~ql~-----~~~~PiIIVlNK~Dl~~~~~i~~d~-~~L~~---~---------- 127 (591)
T TIGR00437 79 VVDASNL-------ER----N-LYLTLQLL-----ELGIPMILALNLVDEAEKKGIRIDE-EKLEE---R---------- 127 (591)
T ss_pred EecCCcc-------hh----h-HHHHHHHH-----hcCCCEEEEEehhHHHHhCCChhhH-HHHHH---H----------
Confidence 9999832 11 1 12222221 1368999999999986544333222 11221 1
Q ss_pred cccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 589 EKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 589 ~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+.+++++||++|+ |++++++.+.+..
T Consensus 128 ----lg~pvv~tSA~tg~-Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 128 ----LGVPVVPTSATEGR-GIERLKDAIRKAI 154 (591)
T ss_pred ----cCCCEEEEECCCCC-CHHHHHHHHHHHh
Confidence 12479999999999 9999999998764
No 211
>KOG1486|consensus
Probab=99.64 E-value=6.7e-17 Score=154.26 Aligned_cols=120 Identities=33% Similarity=0.605 Sum_probs=100.6
Q ss_pred eccccccCcEEEEeccCcCCCCCCCCc-ccccceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccc
Q psy1086 134 LGELNTEEDSIIIAHGGAGGNAQNGWL-GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIK 212 (654)
Q Consensus 134 ~~~l~~~~~~~~~a~Gg~gg~gn~~f~-g~~Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~ 212 (654)
-+.|.+-.+.++....|.+|. +..|. -..|. +||+|||+|.+||||||..|+......++|.|||+.
T Consensus 31 KaKlAkyR~qLlep~~~s~~k-g~GFeV~KsGd-----------aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLt 98 (364)
T KOG1486|consen 31 KAKLAKYRQQLLEPTKGSSGK-GEGFEVLKSGD-----------ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLT 98 (364)
T ss_pred HHHHHHHHHHhCCCCCCCCCC-CCCeeeeccCC-----------eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEE
Confidence 345555556666666666664 34553 44465 489999999999999999999999999999999999
Q ss_pred cceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccC
Q psy1086 213 PNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNG 266 (654)
Q Consensus 213 p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~ 266 (654)
+..|++.+++. .+.+.|+||+++++++++|-+++.......+|++++|+|+..
T Consensus 99 cIpGvi~y~ga-~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 99 CIPGVIHYNGA-NIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATK 151 (364)
T ss_pred eecceEEecCc-eEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCc
Confidence 99999999984 899999999999999999999998888888899999999863
No 212
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.64 E-value=9.2e-16 Score=156.53 Aligned_cols=187 Identities=22% Similarity=0.261 Sum_probs=128.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCc------------------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKI------------------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~------------------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~ 487 (654)
+|+++|+.++|||||+++|+.....+ ....++|++.....+.|++ .++.+|||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~-~~i~liDTPG~~d--- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD-HRINIIDTPGHVD--- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC-EEEEEEECCCcHH---
Confidence 37899999999999999997532111 1245778888888888987 4899999999543
Q ss_pred cccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH--HHH
Q psy1086 488 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EIY 565 (654)
Q Consensus 488 ~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~--~v~ 565 (654)
+...+..+++.+|++++|+|++.. +..+ +. .+...+ ...++|.++++||+|+.+.+ .+.
T Consensus 77 ----f~~~~~~~l~~aD~ailVVDa~~g---~~~~------t~-~~~~~~-----~~~~~p~ivviNK~D~~~a~~~~~~ 137 (270)
T cd01886 77 ----FTIEVERSLRVLDGAVAVFDAVAG---VEPQ------TE-TVWRQA-----DRYNVPRIAFVNKMDRTGADFFRVV 137 (270)
T ss_pred ----HHHHHHHHHHHcCEEEEEEECCCC---CCHH------HH-HHHHHH-----HHcCCCEEEEEECCCCCCCCHHHHH
Confidence 556677899999999999999832 2111 11 111212 12468999999999997532 222
Q ss_pred HHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH---HHHhhHhHHHHHHHHHHHH
Q psy1086 566 DGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL---AEEEQEMVDRELELVKKLK 642 (654)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~ 642 (654)
+++. +.+.. ..+..++|+||..+..|+-+++.+-+..++.. ...+.+.+....+.++++|
T Consensus 138 ~~l~-------~~l~~----------~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r 200 (270)
T cd01886 138 EQIR-------EKLGA----------NPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAR 200 (270)
T ss_pred HHHH-------HHhCC----------CceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHH
Confidence 2222 22211 12234799999988778988887766655321 1234456678889999999
Q ss_pred HHHHhhhcCc
Q psy1086 643 SSLREHQGEM 652 (654)
Q Consensus 643 ~~~~~~~~~~ 652 (654)
++|+|.++|.
T Consensus 201 ~~l~e~vae~ 210 (270)
T cd01886 201 EELIETLAEF 210 (270)
T ss_pred HHHHHHHhcC
Confidence 9999988873
No 213
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.64 E-value=6.9e-15 Score=164.34 Aligned_cols=174 Identities=21% Similarity=0.254 Sum_probs=106.2
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-----------------ceEEEEecCCCCCCC
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-----------------RKMSVADLPGLIEGA 486 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-----------------~~~~i~DTpG~~~~~ 486 (654)
.+.|+++|+.++|||||+++|.+..+......++|.+.....+.++.. ..+.+|||||+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e--- 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE--- 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH---
Confidence 357999999999999999999987554333333444322222211100 138899999954
Q ss_pred ccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH----
Q psy1086 487 HRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ---- 562 (654)
Q Consensus 487 ~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~---- 562 (654)
.+...+..+++.||++++|+|+++. + ..++++.+..+ . ..+.|+|+|+||+|+....
T Consensus 81 ----~f~~l~~~~~~~aD~~IlVvD~~~g---~---~~qt~e~i~~l----~-----~~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 81 ----AFTNLRKRGGALADLAILIVDINEG---F---KPQTQEALNIL----R-----MYKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred ----hHHHHHHHHHhhCCEEEEEEECCcC---C---CHhHHHHHHHH----H-----HcCCCEEEEEECCCccchhhhcc
Confidence 3455566788999999999999832 2 23334333221 1 1368999999999996421
Q ss_pred -------------HHHHHHHHHHHhhHhhhccCCCCCCc------cccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 563 -------------EIYDGIRDTLHNLKDHIHKYPEEFQP------EKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 563 -------------~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+...+.+.+..+...+... .|.+ ..+....+++|+||+||+ |+++|++.+....+.
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~--G~~~e~~~~i~~~~~~v~iVpVSA~tGe-GideLl~~l~~l~~~ 217 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEE--GFEAERFDRVTDFTKTVAIIPISAITGE-GIPELLTMLAGLAQQ 217 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc--CccHHhhhhhhhcCCCceEEEeecCCCC-ChhHHHHHHHHHHHH
Confidence 01111111122111112111 1111 123456789999999999 999999988765443
No 214
>PTZ00099 rab6; Provisional
Probab=99.63 E-value=3.4e-15 Score=142.99 Aligned_cols=134 Identities=13% Similarity=0.023 Sum_probs=96.3
Q ss_pred CCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHH
Q psy1086 453 SYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVL 531 (654)
Q Consensus 453 ~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~ 531 (654)
..|++..++....+.+++. .++.||||||+.++. ..+..+++.||++++|||++ ++.+++.+.
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~-------~~~~~~~~~ad~~ilv~D~t---------~~~sf~~~~ 72 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFR-------SLIPSYIRDSAAAIVVYDIT---------NRQSFENTT 72 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhh-------hccHHHhCCCcEEEEEEECC---------CHHHHHHHH
Confidence 4566666776666777653 278999999965543 33447899999999999999 778899998
Q ss_pred HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHH
Q psy1086 532 LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVND 611 (654)
Q Consensus 532 ~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~e 611 (654)
.|..++.... ..+.|+|||+||+|+...+.+.......+.. .....++++||++|. ||++
T Consensus 73 ~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----------------~~~~~~~e~SAk~g~-nV~~ 132 (176)
T PTZ00099 73 KWIQDILNER--GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----------------EYNTMFHETSAKAGH-NIKV 132 (176)
T ss_pred HHHHHHHHhc--CCCCeEEEEEECcccccccCCCHHHHHHHHH-----------------HcCCEEEEEECCCCC-CHHH
Confidence 8888775432 2468999999999997544333222212211 012247999999999 9999
Q ss_pred HHHHHHHHHHH
Q psy1086 612 AKLKIRSILDL 622 (654)
Q Consensus 612 l~~~i~~~~~~ 622 (654)
+|+.|++.+.+
T Consensus 133 lf~~l~~~l~~ 143 (176)
T PTZ00099 133 LFKKIAAKLPN 143 (176)
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 215
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.63 E-value=2.7e-14 Score=163.71 Aligned_cols=136 Identities=20% Similarity=0.224 Sum_probs=84.5
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchH
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGH 246 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~ 246 (654)
.+++|++..|+.++|||+|||||||||++|+|. ..|..|.|.+++. ..+..+|....... .....
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~-----------~~p~~G~I~~~~~--~~~~~l~q~~~~~~--~~~v~ 84 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGE-----------VLLDDGRIIYEQD--LIVARLQQDPPRNV--EGTVY 84 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEeCCC--CEEEEeccCCCCCC--CCCHH
Confidence 466677777778999999999999999999994 5577788877653 22222222100000 00000
Q ss_pred H-----------HHH---HH-------------HH----------------HHHHHHhhcccCcccCCCCCccChHHHHH
Q psy1086 247 Q-----------FLR---HV-------------ER----------------TKLIAMIVDVNGFQLGLKHPKRSCVETVL 283 (654)
Q Consensus 247 ~-----------~l~---~i-------------~~----------------~~~il~vvd~~~~~l~~~~~~~~~~~~l~ 283 (654)
+ .+. .+ .. ...+..+++..+ +. .+.++..+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg----l~--~~~~~~~LS 158 (635)
T PRK11147 85 DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG----LD--PDAALSSLS 158 (635)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC----CC--CCCchhhcC
Confidence 0 000 00 00 001111122211 11 256789999
Q ss_pred HHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHH
Q psy1086 284 LLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 284 ~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~ 323 (654)
++++++..++..|...|.++++ |++|.....++.+.+.++
T Consensus 159 gGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~ 202 (635)
T PRK11147 159 GGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF 202 (635)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC
Confidence 9999999999999999999999 999998877766665543
No 216
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.2e-15 Score=166.82 Aligned_cols=254 Identities=16% Similarity=0.109 Sum_probs=131.5
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------------cE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------------KM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------------~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|.. .|..|.+.+++.. .+ .+...|
T Consensus 14 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-----------QKDSGSILFQGKEIDFKSSKEALENGISMVHQEL 82 (491)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-----------CCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence 46788888888899999999999999999999953 3445555543310 01 111111
Q ss_pred ccccc--ccccccchH--------HHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCccee
Q psy1086 233 GLIEG--AHRNLGMGH--------QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 302 (654)
Q Consensus 233 Gl~~~--~~~~~~l~~--------~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~i 302 (654)
.+... ..++..+.. ......+++..++..+++ .+..+.....+|++++++..++..+...|.+
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l 155 (491)
T PRK10982 83 NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI-------DIDPRAKVATLSVSQMQMIEIAKAFSYNAKI 155 (491)
T ss_pred ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC-------CCCccCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 11110 001100000 000001122222222222 2334567889999999999999999999999
Q ss_pred Eee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeeccc--CccchHHH-HHHHHHHHHHh
Q psy1086 303 LLV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT--NSTDVNDA-KLKIRSILDLL 375 (654)
Q Consensus 303 lvl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~--~~~~i~~L-~~~i~~~l~~~ 375 (654)
+++ +.+|.....+..+.+.+.... ...+....++...... -...++.+..-. .....+++ ...+.+.+..
T Consensus 156 llLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~-~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~- 232 (491)
T PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQ-LCDEITILRDGQWIATQPLAGLTMDKIIAMMVG- 232 (491)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHH-hCCEEEEEECCEEEeecChhhCCHHHHHHHHhC-
Confidence 999 889988777766666554321 1111111111110000 001222221100 00000110 0000000000
Q ss_pred HhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 376 AEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
..... ..+......+...+...+.++.+.....+++|+++.|..++++|+||+|||||++.+++.
T Consensus 233 --~~~~~-----~~~~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 297 (491)
T PRK10982 233 --RSLTQ-----RFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred --CCccc-----ccccccCCCCCcEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC
Confidence 00000 000000001122334445555443456689999999999999999999999999999986
No 217
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.63 E-value=8.7e-15 Score=140.86 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=93.3
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCC--CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc---cchhHHHH
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARP--KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN---LGMGHQFL 497 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~--~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~---~~~~~~~~ 497 (654)
+..+|+++|.+|+|||||+|++++..+ ..+..+++|.+... +.+++ .+.+|||||+....... ..+.....
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINF--FEVND--GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEE--EEeCC--cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 346899999999999999999998752 22345555555433 23333 69999999975432211 11222223
Q ss_pred HHhh---cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHh
Q psy1086 498 RHVE---RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHN 574 (654)
Q Consensus 498 ~~~~---~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~ 574 (654)
.+++ .++++++|+|++. +.+.... .+...+. ..+.|+++|+||+|+....+...... +
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~---------~~~~~~~-~~~~~~~-----~~~~pviiv~nK~D~~~~~~~~~~~~----~ 153 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRH---------PLKELDL-EMLEWLR-----ERGIPVLIVLTKADKLKKSELNKQLK----K 153 (179)
T ss_pred HHHHhChhhcEEEEEecCCC---------CCCHHHH-HHHHHHH-----HcCCCEEEEEECcccCCHHHHHHHHH----H
Confidence 4454 4689999999973 1222222 1122222 13689999999999976543322222 2
Q ss_pred hHhhhccCCCCCCccccccccceEEEeeecCCCChH
Q psy1086 575 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVN 610 (654)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~ 610 (654)
+++.+... ....++|++||++|+ ||+
T Consensus 154 i~~~l~~~---------~~~~~v~~~Sa~~g~-gi~ 179 (179)
T TIGR03598 154 IKKALKKD---------ADDPSVQLFSSLKKT-GID 179 (179)
T ss_pred HHHHHhhc---------cCCCceEEEECCCCC-CCC
Confidence 22222111 112368999999999 874
No 218
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=8e-15 Score=164.99 Aligned_cols=163 Identities=22% Similarity=0.286 Sum_probs=112.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcC---CCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRAR---PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~---~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.|+++|+.++|||||+++|++.. +.....+++|.+.....+.+++ ..+.+|||||. +.+...+..++..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~-~~v~~iDtPGh-------e~f~~~~~~g~~~ 73 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD-YRLGFIDVPGH-------EKFISNAIAGGGG 73 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC-EEEEEEECCCH-------HHHHHHHHhhhcc
Confidence 58999999999999999999743 2223457888888777788877 58999999994 4466677788899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
+|++++|+|+++. + ..++.+.+.. +. ..++| +|||+||+|+.+...+.. ..+.+.+ .+..
T Consensus 74 aD~aILVVDa~~G---~---~~qT~ehl~i----l~-----~lgi~~iIVVlNK~Dlv~~~~~~~-~~~ei~~---~l~~ 134 (581)
T TIGR00475 74 IDAALLVVDADEG---V---MTQTGEHLAV----LD-----LLGIPHTIVVITKADRVNEEEIKR-TEMFMKQ---ILNS 134 (581)
T ss_pred CCEEEEEEECCCC---C---cHHHHHHHHH----HH-----HcCCCeEEEEEECCCCCCHHHHHH-HHHHHHH---HHHH
Confidence 9999999999832 1 2333333321 11 13577 999999999986543211 1112222 1111
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.+ +....++|++||++|+ ||+++++.+.+.+...
T Consensus 135 ~~-------~~~~~~ii~vSA~tG~-GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 135 YI-------FLKNAKIFKTSAKTGQ-GIGELKKELKNLLESL 168 (581)
T ss_pred hC-------CCCCCcEEEEeCCCCC-CchhHHHHHHHHHHhC
Confidence 10 0124579999999999 9999999988777654
No 219
>COG2262 HflX GTPases [General function prediction only]
Probab=99.63 E-value=1e-15 Score=157.98 Aligned_cols=164 Identities=29% Similarity=0.363 Sum_probs=122.0
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHH---H
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLR---H 251 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~---~ 251 (654)
....|+|||+.|||||||+|+|+++.....+.-|+|++|..-.+.+.++..+.+.||-|++..-.. .+...|.. .
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~--~LV~AFksTLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPH--PLVEAFKSTLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCCh--HHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999988789999999999865322 24444444 4
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccc
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 331 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i 331 (654)
...+|+++||+|+++. ...+.+.....-+..+. ....|.++|+||+|..........+...
T Consensus 269 ~~~aDlllhVVDaSdp---------~~~~~~~~v~~vL~el~--~~~~p~i~v~NKiD~~~~~~~~~~~~~~-------- 329 (411)
T COG2262 269 VKEADLLLHVVDASDP---------EILEKLEAVEDVLAEIG--ADEIPIILVLNKIDLLEDEEILAELERG-------- 329 (411)
T ss_pred hhcCCEEEEEeecCCh---------hHHHHHHHHHHHHHHcC--CCCCCEEEEEecccccCchhhhhhhhhc--------
Confidence 4567999999999842 23333444444333332 2568999999999987554322111110
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
....+++||+++ .|++.|.+.|.+.+..
T Consensus 330 --------------~~~~v~iSA~~~-~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 330 --------------SPNPVFISAKTG-EGLDLLRERIIELLSG 357 (411)
T ss_pred --------------CCCeEEEEeccC-cCHHHHHHHHHHHhhh
Confidence 014799999999 9999999999887764
No 220
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.3e-15 Score=168.68 Aligned_cols=258 Identities=14% Similarity=0.143 Sum_probs=131.8
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------------cE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------------KM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------------~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|.. .|..|.+.+++.. .+ .+.+.+
T Consensus 21 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 89 (510)
T PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-----------EPTKGTITINNINYNKLDHKLAAQLGIGIIYQEL 89 (510)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-----------CCCccEEEECCEECCCCCHHHHHHCCeEEEeecc
Confidence 45778888888899999999999999999999953 3444444443210 01 111111
Q ss_pred ccccc--ccccccchH-------H-----HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcC
Q psy1086 233 GLIEG--AHRNLGMGH-------Q-----FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 298 (654)
Q Consensus 233 Gl~~~--~~~~~~l~~-------~-----~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~ 298 (654)
.+... ..++..+.. . .....+++..++-.+.+ .+..+.+...+|++++++..++..+..
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-------~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 90 SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-------KVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-------CCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 11110 001100000 0 00011122222222222 234467789999999999999999999
Q ss_pred cceeEee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeeccc--CccchHHHH-HHHHHH
Q psy1086 299 KPIILLV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT--NSTDVNDAK-LKIRSI 371 (654)
Q Consensus 299 ~P~ilvl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~--~~~~i~~L~-~~i~~~ 371 (654)
+|.++++ +.+|.....+..+.+.+..+. ...+....++...-... ...++.+..-. .....+++. ..+.+.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 240 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRI-CDRYTVMKDGSSVCSGMVSDVSNDDIVRL 240 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHh-CCEEEEEECCEEeeecchhhCCHHHHHHH
Confidence 9999999 889988777776666654332 11111111111100000 01222222100 000111110 000000
Q ss_pred HHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 372 LDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
+... ......... .+......+...+...+.++.+.....+++|++..|..++++|+||+|||||++.+++.
T Consensus 241 ~~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 312 (510)
T PRK09700 241 MVGR---ELQNRFNAM-KENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred hcCC---Ccccccccc-ccccccCCCCcEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 0000 000000000 00000001122233444444443456689999999999999999999999999999986
No 221
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=1.3e-14 Score=141.14 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=99.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcC------CCc----------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRAR------PKI----------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~------~~~----------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|++.. ... ....++|.+.....+.+++ .++.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~-~~i~~iDtPG~~----- 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN-RHYAHVDCPGHA----- 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC-eEEEEEECcCHH-----
Confidence 478999999999999999998641 100 1156777777666666655 479999999953
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~ 567 (654)
.+...+...++.+|++++|+|++. ++..+++ + +...+. ..++| +|+|+||+|+....+..+.
T Consensus 77 --~~~~~~~~~~~~~D~~ilVvda~~---g~~~~~~---~----~~~~~~-----~~~~~~iIvviNK~D~~~~~~~~~~ 139 (195)
T cd01884 77 --DYIKNMITGAAQMDGAILVVSATD---GPMPQTR---E----HLLLAR-----QVGVPYIVVFLNKADMVDDEELLEL 139 (195)
T ss_pred --HHHHHHHHHhhhCCEEEEEEECCC---CCcHHHH---H----HHHHHH-----HcCCCcEEEEEeCCCCCCcHHHHHH
Confidence 355666788899999999999973 2222211 1 111111 13566 7789999999754444443
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVN 610 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~ 610 (654)
+.+.+.+ .+.+.+ |+ ..+++++|+||++|. |+.
T Consensus 140 ~~~~i~~---~l~~~g--~~----~~~v~iipiSa~~g~-n~~ 172 (195)
T cd01884 140 VEMEVRE---LLSKYG--FD----GDNTPIVRGSALKAL-EGD 172 (195)
T ss_pred HHHHHHH---HHHHhc--cc----ccCCeEEEeeCcccc-CCC
Confidence 4333332 222211 10 135789999999998 753
No 222
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=8.1e-15 Score=146.82 Aligned_cols=167 Identities=23% Similarity=0.379 Sum_probs=119.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc-ccchhHHHHHHhh-c
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVE-R 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~-~~~~~~~~~~~~~-~ 502 (654)
..|++.|++|||||||++.+++....+.+||+||...+.+++..+.. .+|++||||+.+.... ...+..+...+++ -
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~-R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYL-RIQVIDTPGLLDRPLEERNEIERQAILALRHL 247 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCc-eEEEecCCcccCCChHHhcHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999875 7999999999875432 2235555555565 4
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+++++++||.|.. .-.+.|.=..++.++.. . -+.|+++|+||+|..+.....+.... +..
T Consensus 248 ~~~IlF~~D~Se~-------cgy~lE~Q~~L~~eIk~---~-f~~p~v~V~nK~D~~~~e~~~~~~~~-~~~-------- 307 (346)
T COG1084 248 AGVILFLFDPSET-------CGYSLEEQISLLEEIKE---L-FKAPIVVVINKIDIADEEKLEEIEAS-VLE-------- 307 (346)
T ss_pred cCeEEEEEcCccc-------cCCCHHHHHHHHHHHHH---h-cCCCeEEEEecccccchhHHHHHHHH-HHh--------
Confidence 6889999999832 34444443334444432 2 24899999999998755433222221 211
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
........+|+..+- +++.+.+.+.....+
T Consensus 308 ---------~~~~~~~~~~~~~~~-~~d~~~~~v~~~a~~ 337 (346)
T COG1084 308 ---------EGGEEPLKISATKGC-GLDKLREEVRKTALE 337 (346)
T ss_pred ---------hccccccceeeeehh-hHHHHHHHHHHHhhc
Confidence 011124678888888 888888887776544
No 223
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.62 E-value=2.4e-14 Score=139.73 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=100.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCC--CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc---cchhHHHHH
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARP--KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN---LGMGHQFLR 498 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~--~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~---~~~~~~~~~ 498 (654)
..+|+++|.+|+|||||++++++..+ ..+..+++|..... ..++ .++.+|||||+....... ..+......
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF--FEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE--EecC--CeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 36899999999999999999998642 22334555544332 2222 479999999975432211 122223334
Q ss_pred Hhh---cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhh
Q psy1086 499 HVE---RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 575 (654)
Q Consensus 499 ~~~---~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~ 575 (654)
+++ .++++++|+|++.. ..... ..+..++. ..+.|+++++||+|+....+..... +.+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~---------~~~~~-~~i~~~l~-----~~~~~~iiv~nK~Dl~~~~~~~~~~-~~i--- 160 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHP---------LKELD-LQMIEWLK-----EYGIPVLIVLTKADKLKKGERKKQL-KKV--- 160 (196)
T ss_pred HHHhCccceEEEEEEecCCC---------CCHHH-HHHHHHHH-----HcCCcEEEEEECcccCCHHHHHHHH-HHH---
Confidence 444 44788899998731 11111 11222221 2368999999999997654332211 111
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
...+.. ...+++++||++|+ |++++++.|.+.+++
T Consensus 161 ~~~l~~-----------~~~~~~~~Sa~~~~-gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 161 RKALKF-----------GDDEVILFSSLKKQ-GIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHh-----------cCCceEEEEcCCCC-CHHHHHHHHHHHhcC
Confidence 111110 02468999999999 999999999887653
No 224
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.62 E-value=4e-15 Score=146.75 Aligned_cols=153 Identities=23% Similarity=0.254 Sum_probs=98.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc-------------------------------CCCcccccceeEEEEeCCCceE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA-------------------------------SYPFTTIKPNVGVITFDDFRKM 474 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~v~~~~~~~~ 474 (654)
+|+++|++++|||||+++|+.....+. ...++|++.....+.+++ .++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~-~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK-RKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC-ceE
Confidence 589999999999999999986543322 136788888888888876 489
Q ss_pred EEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCC-CCEEEEE
Q psy1086 475 SVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE-KPIILLV 553 (654)
Q Consensus 475 ~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~-~p~iiv~ 553 (654)
.+|||||+. .+...+..+++.||++++|+|++.. +..+ . ..+...+. ..+ .++|+|+
T Consensus 80 ~liDTpG~~-------~~~~~~~~~~~~ad~~llVvD~~~~---~~~~------~-~~~~~~~~-----~~~~~~iIvvi 137 (208)
T cd04166 80 IIADTPGHE-------QYTRNMVTGASTADLAILLVDARKG---VLEQ------T-RRHSYILS-----LLGIRHVVVAV 137 (208)
T ss_pred EEEECCcHH-------HHHHHHHHhhhhCCEEEEEEECCCC---ccHh------H-HHHHHHHH-----HcCCCcEEEEE
Confidence 999999953 3444566778999999999999832 1111 1 11111111 123 4577899
Q ss_pred eCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHH
Q psy1086 554 NKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 613 (654)
Q Consensus 554 NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~ 613 (654)
||+|+... ......+.+.+.++ ....+ ....++|++||++|. |+++..
T Consensus 138 NK~D~~~~~~~~~~~i~~~~~~~---~~~~~--------~~~~~ii~iSA~~g~-ni~~~~ 186 (208)
T cd04166 138 NKMDLVDYSEEVFEEIVADYLAF---AAKLG--------IEDITFIPISALDGD-NVVSRS 186 (208)
T ss_pred EchhcccCCHHHHHHHHHHHHHH---HHHcC--------CCCceEEEEeCCCCC-CCccCC
Confidence 99998743 22222222222222 21111 112468999999999 998654
No 225
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.62 E-value=4.5e-15 Score=165.94 Aligned_cols=249 Identities=14% Similarity=0.136 Sum_probs=128.1
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC------------ccE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF------------RKM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~------------~~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|.. .|..|.+.+++. ..+ .+.+.|
T Consensus 20 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK10762 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-----------TRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQEL 88 (501)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEECCCCCHHHHHhCCEEEEEcch
Confidence 35677777778889999999999999999999953 344555544321 001 111112
Q ss_pred ccccc--ccccccchHH---------HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcce
Q psy1086 233 GLIEG--AHRNLGMGHQ---------FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPI 301 (654)
Q Consensus 233 Gl~~~--~~~~~~l~~~---------~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ 301 (654)
.++.. ..++..+... .....+++..++..+++ .+..+.+..++|++++++..++.++..+|.
T Consensus 89 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 89 NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL-------RFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC-------CCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 22211 0111101000 00001122222222222 234467789999999999999999999999
Q ss_pred eEee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecc----cC-ccchHHHHHHHHHHH
Q psy1086 302 ILLV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK----TN-STDVNDAKLKIRSIL 372 (654)
Q Consensus 302 ilvl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~----~~-~~~i~~L~~~i~~~l 372 (654)
++++ +.+|.....+..+.+.+.... ...+....+....-.. -...++.+..- .+ ...+.. +.+.+..
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~-~~d~i~~l~~G~i~~~~~~~~~~~--~~~~~~~ 237 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFE-ICDDVTVFRDGQFIAEREVADLTE--DSLIEMM 237 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-hCCEEEEEeCCEEEEecCcCcCCH--HHHHHHh
Confidence 9999 889988777766665554322 1111111111110000 00122222210 00 011100 0000000
Q ss_pred HHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 373 DLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
.. . .... .. +......+...+...+.+. ....+++|++..|..++++|+||+|||||++.+++.
T Consensus 238 ~~--~-~~~~-~~----~~~~~~~~~~~l~~~~l~~---~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~ 301 (501)
T PRK10762 238 VG--R-KLED-QY----PRLDKAPGEVRLKVDNLSG---PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred cC--C-Cccc-cc----cccccCCCCcEEEEeCccc---CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC
Confidence 00 0 0000 00 0000001112222333332 235689999999999999999999999999999986
No 226
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=7.1e-15 Score=140.86 Aligned_cols=162 Identities=22% Similarity=0.263 Sum_probs=109.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|..++||||+++++...... . ...|..+....+.+++ ..+.+||.+|.. .++..|..|++.+
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~-~--~~pT~g~~~~~i~~~~-~~~~~~d~gG~~-------~~~~~w~~y~~~~ 82 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEIS-E--TIPTIGFNIEEIKYKG-YSLTIWDLGGQE-------SFRPLWKSYFQNA 82 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEE-E--EEEESSEEEEEEEETT-EEEEEEEESSSG-------GGGGGGGGGHTTE
T ss_pred EEEEEEECCCccchHHHHHHhhhcccc-c--cCcccccccceeeeCc-EEEEEEeccccc-------cccccceeecccc
Confidence 358999999999999999999875332 2 2335567777788877 489999999953 3445556789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +.+.+........++.. .....+.|++|++||+|+++.-.. .++.+.+. +.++.
T Consensus 83 ~~iIfVvDss---------d~~~l~e~~~~L~~ll~-~~~~~~~piLIl~NK~D~~~~~~~-~~i~~~l~-l~~l~---- 146 (175)
T PF00025_consen 83 DGIIFVVDSS---------DPERLQEAKEELKELLN-DPELKDIPILILANKQDLPDAMSE-EEIKEYLG-LEKLK---- 146 (175)
T ss_dssp SEEEEEEETT---------GGGGHHHHHHHHHHHHT-SGGGTTSEEEEEEESTTSTTSSTH-HHHHHHTT-GGGTT----
T ss_pred ceeEEEEecc---------cceeecccccchhhhcc-hhhcccceEEEEeccccccCcchh-hHHHhhhh-hhhcc----
Confidence 9999999998 33333333322222221 123357999999999998764221 22222221 11111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
......++.+||++|+ |+.|.|+.|.+.+
T Consensus 147 -------~~~~~~v~~~sa~~g~-Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 147 -------NKRPWSVFSCSAKTGE-GVDEGLEWLIEQI 175 (175)
T ss_dssp -------SSSCEEEEEEBTTTTB-THHHHHHHHHHHH
T ss_pred -------cCCceEEEeeeccCCc-CHHHHHHHHHhcC
Confidence 0123358999999999 9999999998753
No 227
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.61 E-value=1.3e-14 Score=163.44 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCcc---------------CCCcccccceeEEEEeC--CC--ceEEEEecCCCCCC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIA---------------SYPFTTIKPNVGVITFD--DF--RKMSVADLPGLIEG 485 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~---------------~~~~~t~~~~~~~v~~~--~~--~~~~i~DTpG~~~~ 485 (654)
.+++++|+.++|||||+++|+.....+. ...++|.......+.|. ++ ..+.+|||||+.+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d- 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD- 82 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-
Confidence 5799999999999999999987532111 12356666555556553 21 3689999999654
Q ss_pred CccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHH
Q psy1086 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY 565 (654)
Q Consensus 486 ~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~ 565 (654)
+...+..+++.||++++|+|+++ ....++...|...+. .+.|+|+|+||+|+.+.. .
T Consensus 83 ------F~~~v~~~l~~aD~aILVvDat~---------g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~--~ 139 (595)
T TIGR01393 83 ------FSYEVSRSLAACEGALLLVDAAQ---------GIEAQTLANVYLALE------NDLEIIPVINKIDLPSAD--P 139 (595)
T ss_pred ------HHHHHHHHHHhCCEEEEEecCCC---------CCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccC--H
Confidence 55667789999999999999983 223344444443321 368999999999986432 1
Q ss_pred HHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 566 DGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+.+.+ .+. ....+++++||++|. ||++||+.|.+.+
T Consensus 140 ~~~~~el~~---~lg-----------~~~~~vi~vSAktG~-GI~~Lle~I~~~l 179 (595)
T TIGR01393 140 ERVKKEIEE---VIG-----------LDASEAILASAKTGI-GIEEILEAIVKRV 179 (595)
T ss_pred HHHHHHHHH---HhC-----------CCcceEEEeeccCCC-CHHHHHHHHHHhC
Confidence 111112221 110 011247999999999 9999999998765
No 228
>PRK15494 era GTPase Era; Provisional
Probab=99.61 E-value=1.4e-15 Score=160.50 Aligned_cols=179 Identities=24% Similarity=0.298 Sum_probs=120.2
Q ss_pred ccccceeeEEEEEeecC-------cEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecC
Q psy1086 161 GRKGEELAVRLELKLIA-------DIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLP 232 (654)
Q Consensus 161 g~~Ge~~~i~L~lk~~~-------~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~P 232 (654)
..++....+.|+++.|. +|+|||.||||||||+|.|.+.+..+ .+.+.||.....+.+.+++ .++.++|||
T Consensus 30 ~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~-~qi~~~DTp 108 (339)
T PRK15494 30 ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD-TQVILYDTP 108 (339)
T ss_pred CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC-eEEEEEECC
Confidence 34555556666666666 89999999999999999999976543 5678889888888888876 589999999
Q ss_pred ccccccc-ccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCcc
Q psy1086 233 GLIEGAH-RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 311 (654)
Q Consensus 233 Gl~~~~~-~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~ 311 (654)
|+.+... ....+.+..+..+..+|++++|+|.... .. .. ...+...... ...|.++|+||+|+.
T Consensus 109 G~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s-------~~----~~---~~~il~~l~~-~~~p~IlViNKiDl~ 173 (339)
T PRK15494 109 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS-------FD----DI---THNILDKLRS-LNIVPIFLLNKIDIE 173 (339)
T ss_pred CcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC-------CC----HH---HHHHHHHHHh-cCCCEEEEEEhhcCc
Confidence 9864322 2222333444557788999999987521 01 11 1111111111 356788999999986
Q ss_pred chHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 312 GAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 312 ~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.. ....+.+.+... ..+..++++||+++ .|++++++.+.+.++.
T Consensus 174 ~~--~~~~~~~~l~~~----------------~~~~~i~~iSAktg-~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 174 SK--YLNDIKAFLTEN----------------HPDSLLFPISALSG-KNIDGLLEYITSKAKI 217 (339)
T ss_pred cc--cHHHHHHHHHhc----------------CCCcEEEEEeccCc-cCHHHHHHHHHHhCCC
Confidence 43 223333333221 01236899999999 9999999999877654
No 229
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=6e-15 Score=165.14 Aligned_cols=255 Identities=17% Similarity=0.140 Sum_probs=130.4
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC------------ccE-EEEecCc
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF------------RKM-SVADLPG 233 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~------------~~~-~i~D~PG 233 (654)
.+++|++..|+.++|+|+||||||||+++|+|..+. .|..|.+.+++. ..+ .+.+.|.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 92 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH---------GTYEGEIIFEGEELQASNIRDTERAGIAIIHQELA 92 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc
Confidence 567777777778999999999999999999996431 023455544321 001 1111222
Q ss_pred cccc--ccccccchHH--------HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 234 LIEG--AHRNLGMGHQ--------FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 234 l~~~--~~~~~~l~~~--------~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
+... ..++..+... .....++...++..+.+ .+..+..+.++|++++++..++..+..+|.++
T Consensus 93 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 165 (506)
T PRK13549 93 LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-------DINPATPVGNLGLGQQQLVEIAKALNKQARLL 165 (506)
T ss_pred cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-------CCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2111 0111101000 00001112222222222 23346678999999999999999999999999
Q ss_pred ee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeeccc--CccchHHHH-HHHHHHHHHhH
Q psy1086 304 LV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT--NSTDVNDAK-LKIRSILDLLA 376 (654)
Q Consensus 304 vl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~--~~~~i~~L~-~~i~~~l~~~~ 376 (654)
++ +.+|.....+..+.+.+.... ...+....+........ ...++.+..-. .....+++. ....+.+..
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~-- 241 (506)
T PRK13549 166 ILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAI-SDTICVIRDGRHIGTRPAAGMTEDDIITMMVG-- 241 (506)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHh-cCEEEEEECCEEeeecccccCCHHHHHHHhhC--
Confidence 99 889988777766666654321 11111111111100000 01222221100 000000000 000000000
Q ss_pred hHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCC-----CcceeeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 377 EEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRK-----GEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
..... ..+......+...+...+.++.+. ....+++|+++.|..++++|+||+|||||++.+++.
T Consensus 242 -~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 242 -RELTA-----LYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred -cCccc-----cccccccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 00000 000000001222334445555442 234589999999999999999999999999999986
No 230
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.61 E-value=6.9e-15 Score=164.62 Aligned_cols=259 Identities=17% Similarity=0.171 Sum_probs=132.3
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------------cE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------------KM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------------~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|. +.|..|.+.+++.. .+ .+.+.+
T Consensus 27 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 95 (510)
T PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-----------VPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEP 95 (510)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEeccC
Confidence 4578888888889999999999999999999995 44566666654310 01 111222
Q ss_pred cccccc--cccccchHHHHHH-HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----
Q psy1086 233 GLIEGA--HRNLGMGHQFLRH-VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV---- 305 (654)
Q Consensus 233 Gl~~~~--~~~~~l~~~~l~~-i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl---- 305 (654)
.+.... .++..+....... .+++.-++..+.+ .+..+.....+|++++++..++..+...|.++++
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 96 LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGC-------QLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCC-------CccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 222110 0111110000000 1122222222222 2334667789999999999999999999999999
Q ss_pred cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeeccc--CccchHHHHH-HHHHHHHHhHhH-HHh
Q psy1086 306 NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT--NSTDVNDAKL-KIRSILDLLAEE-EQE 381 (654)
Q Consensus 306 NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~--~~~~i~~L~~-~i~~~l~~~~~~-~~~ 381 (654)
+.+|.....+..+.+.+..+. ...+....+....... -...++.+..-. .....+++.. .+.+.+...... ...
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 246 (510)
T PRK15439 169 ASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQ-LADRISVMRDGTIALSGKTADLSTDDIIQAITPAAREKSLS 246 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-hCCEEEEEECCEEEEecChHHcCHHHHHHHHhCcccccccc
Confidence 889988877777766655332 1111111111110000 011233222100 0011122111 111111000000 000
Q ss_pred h-hhhhhhhhHH--HHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 382 M-VDRELELDSI--IIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 382 ~-~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
. ......++.. ....+...+...+.+. ....+++|+++.+..++++|+||+|||||++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl 312 (510)
T PRK15439 247 ASQKLWLELPGNRRQQAAGAPVLTVEDLTG---EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL 312 (510)
T ss_pred ccccccccccccccccCCCCceEEEeCCCC---CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 0 0000000000 0001112222333332 135689999999999999999999999999999985
No 231
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=6.9e-15 Score=139.66 Aligned_cols=164 Identities=27% Similarity=0.438 Sum_probs=106.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccc-cchHHHHHHH-HHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHV-ERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~-~l~~~~l~~i-~~~ 255 (654)
+|+++|.+|||||||+++|++..+.+.+++++|..+..+.+.+.+ ..+.++||||+.+...... .+........ ..+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY-LRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc-eEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 689999999999999999999888788899999999998887755 5799999999854322111 1111111111 124
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++++|+|++.. .....+....+..++ ...+...|.++++||+|+.......+ ..+....
T Consensus 81 d~~l~v~d~~~~-------~~~~~~~~~~~~~~l---~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~--------- 140 (168)
T cd01897 81 AAVLFLFDPSET-------CGYSLEEQLSLFEEI---KPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEEL--------- 140 (168)
T ss_pred CcEEEEEeCCcc-------cccchHHHHHHHHHH---HhhcCcCCeEEEEEccccCchhhHHH-HHHhhhh---------
Confidence 677788888631 011112222222222 22224789999999999976543322 1111110
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
...+++++||+++ .|++++++++.+.+
T Consensus 141 ---------~~~~~~~~Sa~~~-~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 ---------EGEEVLKISTLTE-EGVDEVKNKACELL 167 (168)
T ss_pred ---------ccCceEEEEeccc-CCHHHHHHHHHHHh
Confidence 1136899999999 99999999887653
No 232
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.3e-14 Score=158.88 Aligned_cols=158 Identities=25% Similarity=0.396 Sum_probs=118.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc--ccchhHHHHHHh--
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR--NLGMGHQFLRHV-- 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~--~~~~~~~~~~~~-- 500 (654)
.+|+++|++||||||++|+++|.+..+.+.||+|++-..+.+.+.+. ++.++|+||..+.... .+...+ +++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~-~i~ivDLPG~YSL~~~S~DE~Var---~~ll~ 79 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH-EIEIVDLPGTYSLTAYSEDEKVAR---DFLLE 79 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc-eEEEEeCCCcCCCCCCCchHHHHH---HHHhc
Confidence 46999999999999999999999999999999999999999999985 6999999998765433 332333 333
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
..+|+++.|+|++.. .|..+-++ ++. +.+.|+|++.|++|..+.+.+.-+..+ +.+.
T Consensus 80 ~~~D~ivnVvDAtnL-------eRnLyltl-----QLl-----E~g~p~ilaLNm~D~A~~~Gi~ID~~~----L~~~-- 136 (653)
T COG0370 80 GKPDLIVNVVDATNL-------ERNLYLTL-----QLL-----ELGIPMILALNMIDEAKKRGIRIDIEK----LSKL-- 136 (653)
T ss_pred CCCCEEEEEcccchH-------HHHHHHHH-----HHH-----HcCCCeEEEeccHhhHHhcCCcccHHH----HHHH--
Confidence 367999999999832 22222111 121 247899999999998765444333322 2221
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
-++|++++||++|. |++++.+++.+..+.
T Consensus 137 ------------LGvPVv~tvA~~g~-G~~~l~~~i~~~~~~ 165 (653)
T COG0370 137 ------------LGVPVVPTVAKRGE-GLEELKRAIIELAES 165 (653)
T ss_pred ------------hCCCEEEEEeecCC-CHHHHHHHHHHhccc
Confidence 24689999999999 999999999876653
No 233
>KOG0073|consensus
Probab=99.60 E-value=4.8e-14 Score=126.55 Aligned_cols=158 Identities=21% Similarity=0.295 Sum_probs=114.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.||.++|.+|+||||++++|++... +....|..++...+.+++. ++++||..| +..++.-|..|+..+|
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~~~~-~L~iwDvGG-------q~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEYKGY-TLNIWDVGG-------QKTLRSYWKNYFESTD 85 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEecce-EEEEEEcCC-------cchhHHHHHHhhhccC
Confidence 5899999999999999999999753 3333467788888888885 899999999 5557888999999999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh---HHHHHHHHHHHHhhHhhhcc
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~---~~v~~~~~~~~~~~~~~~~~ 581 (654)
++|.|||.+ ++..++.......++.. .....+.|++|++||.|+... .++.... .+.++..+
T Consensus 86 glIwvvDss---------D~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~-----~L~~l~ks 150 (185)
T KOG0073|consen 86 GLIWVVDSS---------DRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKAL-----DLEELAKS 150 (185)
T ss_pred eEEEEEECc---------hHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhh-----CHHHhccc
Confidence 999999998 55555554443333321 223357899999999999743 2222211 12222211
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...+++-+||.||+ ++.+-++.++..+
T Consensus 151 -----------~~~~l~~cs~~tge-~l~~gidWL~~~l 177 (185)
T KOG0073|consen 151 -----------HHWRLVKCSAVTGE-DLLEGIDWLCDDL 177 (185)
T ss_pred -----------cCceEEEEeccccc-cHHHHHHHHHHHH
Confidence 22468999999998 8888888776544
No 234
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=4.9e-15 Score=160.25 Aligned_cols=164 Identities=26% Similarity=0.324 Sum_probs=112.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccc-ccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG-AHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~-~~~~~~l~~~~l~~i~~~ 255 (654)
..|+|||.||||||||+|+|++....+.+++|+|++|..+.+.+.+...+.++||||++.. ++.-.......+..+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 6799999999999999999999888888999999999999998876557899999998653 211111112234556678
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
|++++|+|++.. .....+......+..+. ....|.++|+||+|+..... ..+.. ...
T Consensus 278 DlIL~VvDaS~~---------~~~e~l~~v~~iL~el~--~~~~pvIiV~NKiDL~~~~~--~~~~~-~~~--------- 334 (426)
T PRK11058 278 TLLLHVVDAADV---------RVQENIEAVNTVLEEID--AHEIPTLLVMNKIDMLDDFE--PRIDR-DEE--------- 334 (426)
T ss_pred CEEEEEEeCCCc---------cHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccCCCchh--HHHHH-Hhc---------
Confidence 899999998731 12233322223232221 13689999999999864311 11110 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+....+.+||+++ .|+++|++.+.+.+.
T Consensus 335 ---------~~~~~v~ISAktG-~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 335 ---------NKPIRVWLSAQTG-AGIPLLFQALTERLS 362 (426)
T ss_pred ---------CCCceEEEeCCCC-CCHHHHHHHHHHHhh
Confidence 0012578999999 999999999987663
No 235
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.59 E-value=5.9e-15 Score=165.81 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=89.5
Q ss_pred cChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEE
Q psy1086 276 RSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILP 351 (654)
Q Consensus 276 ~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~ 351 (654)
+.....+|++++++..++.++...|.++++ +.+|.....+..+.+.+...+....+....+....... -..+++.
T Consensus 163 ~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-~~d~i~~ 241 (520)
T TIGR03269 163 THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED-LSDKAIW 241 (520)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH-hcCEEEE
Confidence 456688999999999999999999999999 89998888777776666543211111111111110000 0112333
Q ss_pred eeccc---CccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCC-------Ccceeeeeee
Q psy1086 352 ISAKT---NSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRK-------GEELAVRLEL 421 (654)
Q Consensus 352 iSA~~---~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~l~~ 421 (654)
+..-. . ...+++........... . .. . ....+...+...+..+.|. ....+++|++
T Consensus 242 l~~G~i~~~-g~~~~~~~~~~~~~~~~-----~---~~---~--~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i 307 (520)
T TIGR03269 242 LENGEIKEE-GTPDEVVAVFMEGVSEV-----E---KE---C--EVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEV 307 (520)
T ss_pred EeCCEEeee-cCHHHHHHHHHhhchhh-----c---cc---c--ccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEE
Confidence 22100 0 11222222110000000 0 00 0 0001222344455555442 2355899999
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
..|..++++|+||+|||||++.+++.
T Consensus 308 ~~Ge~~~l~G~NGsGKSTLl~~l~Gl 333 (520)
T TIGR03269 308 KEGEIFGIVGTSGAGKTTLSKIIAGV 333 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999999999999999999999986
No 236
>PTZ00258 GTP-binding protein; Provisional
Probab=99.59 E-value=5.1e-14 Score=148.95 Aligned_cols=92 Identities=33% Similarity=0.614 Sum_probs=82.1
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc----------------eEEEEecCCCCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGA 486 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~----------------~~~i~DTpG~~~~~ 486 (654)
...+|+++|.+|+|||||+|+|.+....+.++|++|+++..+.+.+.+.+ ++.++||||+.+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 44689999999999999999999988888899999999999999887532 48999999999888
Q ss_pred ccccchhHHHHHHhhcccEEEEEEeCCC
Q psy1086 487 HRNLGMGHQFLRHVERTKLIAMIVDVNG 514 (654)
Q Consensus 487 ~~~~~~~~~~~~~~~~a~~~ilV~D~~~ 514 (654)
+...++...++..++.||++++|+|+..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f~ 127 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAFE 127 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 7777888999999999999999999863
No 237
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.59 E-value=1.3e-13 Score=155.82 Aligned_cols=140 Identities=23% Similarity=0.228 Sum_probs=84.6
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE-EEEecCccccc--cccccc
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM-SVADLPGLIEG--AHRNLG 243 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~-~i~D~PGl~~~--~~~~~~ 243 (654)
.+++|++..|..++|+|+||||||||+++|+|. +.|..|.+.++....+ .+.+.|.+... ..++..
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~-----------~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~ 92 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVE 92 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHH
Confidence 567777777778999999999999999999994 4456677665432222 22222322211 011111
Q ss_pred chHH-H------HHHH-------------------------H------HHHHHHHhhcccCcccCCCCCccChHHHHHHH
Q psy1086 244 MGHQ-F------LRHV-------------------------E------RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLL 285 (654)
Q Consensus 244 l~~~-~------l~~i-------------------------~------~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~ 285 (654)
++.. + .... . ....+..+++..+ +. ..+.++..+|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----l~-~~~~~~~~LSgG 167 (556)
T PRK11819 93 EGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR----CP-PWDAKVTKLSGG 167 (556)
T ss_pred HhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC----CC-cccCchhhcCHH
Confidence 1000 0 0000 0 0001112222222 11 235678899999
Q ss_pred HHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHH
Q psy1086 286 NKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 286 ~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~ 322 (654)
++++..++..+..+|.++++ |.+|.....+..+.+.+
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence 99999999999999999999 89998877766655554
No 238
>KOG1491|consensus
Probab=99.58 E-value=6.6e-15 Score=147.17 Aligned_cols=89 Identities=38% Similarity=0.720 Sum_probs=82.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc----------------cEEEEecCccccccccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGAHRN 241 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~----------------~~~i~D~PGl~~~~~~~ 241 (654)
.+||||.||+|||||+|+|+......++|||+|++|+.+.|...+.+ .+++.|++|+..+++.+
T Consensus 22 kiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G 101 (391)
T KOG1491|consen 22 KIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAG 101 (391)
T ss_pred eeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccC
Confidence 68999999999999999999998889999999999999999876532 47899999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhcccC
Q psy1086 242 LGMGHQFLRHVERTKLIAMIVDVNG 266 (654)
Q Consensus 242 ~~l~~~~l~~i~~~~~il~vvd~~~ 266 (654)
.|+|..|+.|++.+|.+.+|+++.+
T Consensus 102 ~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 102 EGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCchHHHHHhhhhccceeEEEEecC
Confidence 9999999999999999999998875
No 239
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.58 E-value=4.1e-14 Score=140.63 Aligned_cols=172 Identities=20% Similarity=0.101 Sum_probs=119.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC-CceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~-~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|..|+|||||+++|.+..+.....++++...........+ ..++.+|||+|+. .+...+..|++.+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~-------~~~~~~~~y~~~~ 78 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE-------EYRSLRPEYYRGA 78 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH-------HHHHHHHHHhcCC
Confidence 5899999999999999999999877666666555444443333321 2368999999954 4556667899999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHH------hhHh
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH------NLKD 577 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~------~~~~ 577 (654)
+++++|+|.+. ...+.+....|..++..... .+.|+++|+||+|+...+.....+...+. ....
T Consensus 79 ~~~l~~~d~~~--------~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (219)
T COG1100 79 NGILIVYDSTL--------RESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAP 148 (219)
T ss_pred CEEEEEEeccc--------chhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHh
Confidence 99999999983 26677888888888765432 36899999999999876543322222111 0000
Q ss_pred hhccCCCCCCccccccccceEEEeee--cCCCChHHHHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAK--TNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAk--tg~~gv~el~~~i~~~~~~ 622 (654)
.... .......++++||+ ++. +|.++|..+.+.+..
T Consensus 149 ~~~~--------~~~~~~~~~~~s~~~~~~~-~v~~~~~~~~~~~~~ 186 (219)
T COG1100 149 KAVL--------PEVANPALLETSAKSLTGP-NVNELFKELLRKLLE 186 (219)
T ss_pred HHhh--------hhhcccceeEeecccCCCc-CHHHHHHHHHHHHHH
Confidence 0000 00011227999999 888 999999999887753
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.58 E-value=1.9e-14 Score=161.01 Aligned_cols=256 Identities=18% Similarity=0.136 Sum_probs=129.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC------------ccE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF------------RKM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~------------~~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|..+. .|..|.+.+++. ..+ .+.+.|
T Consensus 17 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~---------~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 87 (500)
T TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPH---------GTWDGEIYWSGSPLKASNIRDTERAGIVIIHQEL 87 (500)
T ss_pred ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHHHHHhCCEEEEeecc
Confidence 4578888888889999999999999999999995331 023555554331 001 111112
Q ss_pred cccccc--cccccchHH---------HHHHHHHHHHHHHhhcccCcccCCCCC-ccChHHHHHHHHHHHHHHhHhhcCcc
Q psy1086 233 GLIEGA--HRNLGMGHQ---------FLRHVERTKLIAMIVDVNGFQLGLKHP-KRSCVETVLLLNKELELYKMNLLEKP 300 (654)
Q Consensus 233 Gl~~~~--~~~~~l~~~---------~l~~i~~~~~il~vvd~~~~~l~~~~~-~~~~~~~l~~~~~el~~~~~~l~~~P 300 (654)
.+.... .++..+... .....+++..++..+++. +. .+.++.++|++++++..++..+..+|
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 88 TLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD-------ADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred ccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCC-------CCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 111110 000000000 000011222222222222 22 24567899999999999999999999
Q ss_pred eeEee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCc-c-chHHHH-HHHHHHHH
Q psy1086 301 IILLV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS-T-DVNDAK-LKIRSILD 373 (654)
Q Consensus 301 ~ilvl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~-~-~i~~L~-~~i~~~l~ 373 (654)
.++++ +.+|.....+..+.+.+..+. ...+....+....... -...++.+..-.-. . ..++.. ..+...+.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~-~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 238 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKA-VCDTICVIRDGQHVATKDMSTMSEDDIITMMV 238 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHH-hCCEEEEEeCCeEeeecCcccCCHHHHHHHHh
Confidence 99999 889988777776666554321 1111111111110000 00122222210000 0 000000 00000000
Q ss_pred HhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccC-----CCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 374 LLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGR-----KGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
. ..... ..+......+...+...+..+.+ .....+++|++..+..++++|+||+|||||++.+++.
T Consensus 239 ~---~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 239 G---REITS-----LYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred C---ccccc-----cccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 0 00000 00000000112233444454443 1235589999999999999999999999999999986
No 241
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.58 E-value=1.5e-13 Score=155.28 Aligned_cols=141 Identities=21% Similarity=0.209 Sum_probs=84.6
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE-EEEecCccccc--ccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM-SVADLPGLIEG--AHRNL 242 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~-~i~D~PGl~~~--~~~~~ 242 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.++....+ .+.+.|.+... ..++.
T Consensus 21 l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i 89 (552)
T TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENV 89 (552)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHH
Confidence 3567777777778999999999999999999995 4455666665432222 22222332211 11111
Q ss_pred cchHHHHH----HH-----------H----------HH-------------HHHHHhhcccCcccCCCCCccChHHHHHH
Q psy1086 243 GMGHQFLR----HV-----------E----------RT-------------KLIAMIVDVNGFQLGLKHPKRSCVETVLL 284 (654)
Q Consensus 243 ~l~~~~l~----~i-----------~----------~~-------------~~il~vvd~~~~~l~~~~~~~~~~~~l~~ 284 (654)
.++..... .+ . +. ..+..+++..+ +. ..+.++..+|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----l~-~~~~~~~~LSg 164 (552)
T TIGR03719 90 EEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR----CP-PWDADVTKLSG 164 (552)
T ss_pred HHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC----CC-cccCchhhcCH
Confidence 11000000 00 0 00 00111122211 11 23567889999
Q ss_pred HHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHH
Q psy1086 285 LNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 285 ~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~ 322 (654)
+++++..++..+...|.++++ |.+|.....+..+.+.+
T Consensus 165 Gqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence 999999999999999999999 89998877766665544
No 242
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.7e-13 Score=154.25 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=82.1
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE-EEEecCccccccc--cccc
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM-SVADLPGLIEGAH--RNLG 243 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~-~i~D~PGl~~~~~--~~~~ 243 (654)
.+++|++..|+.++|+|+||||||||+++|+|. +.|..|.+.+++...+ .+.+.|.+..... ++..
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 86 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGD-----------LEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVI 86 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHH
Confidence 467777777778999999999999999999994 3455666666542222 1112121211100 0000
Q ss_pred chH-HHHH------------------------------H---HHHHHHHHHhhcccCcccCCCC-CccChHHHHHHHHHH
Q psy1086 244 MGH-QFLR------------------------------H---VERTKLIAMIVDVNGFQLGLKH-PKRSCVETVLLLNKE 288 (654)
Q Consensus 244 l~~-~~l~------------------------------~---i~~~~~il~vvd~~~~~l~~~~-~~~~~~~~l~~~~~e 288 (654)
+.. .+.. . .+....+..+++..+ +.+ ..+.++..+|+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----l~~~~~~~~~~~LSgGq~q 162 (530)
T PRK15064 87 MGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG----IPEEQHYGLMSEVAPGWKL 162 (530)
T ss_pred HhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC----CChhHhcCchhhcCHHHHH
Confidence 000 0000 0 000011112222222 111 123567899999999
Q ss_pred HHHHhHhhcCcceeEee----cccCccchHhHHHHHH
Q psy1086 289 LELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIR 321 (654)
Q Consensus 289 l~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~ 321 (654)
+..++..+..+|.++++ |.+|.....+..+.+.
T Consensus 163 rv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 199 (530)
T PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN 199 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 99999999999999999 8999887776655554
No 243
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.57 E-value=5.2e-14 Score=158.88 Aligned_cols=161 Identities=19% Similarity=0.243 Sum_probs=106.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCC---CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARP---KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~---~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
-|+++|+.++|||||+++|++... ......++|.+.....+...++..+.+|||||+ +.+...+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-------e~fi~~m~~g~~~ 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-------EKFLSNMLAGVGG 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-------HHHHHHHHHHhhc
Confidence 478999999999999999997432 223346788777666665555457899999995 4455666788899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
+|++++|+|++. ++. .++.+.+. .+. ..+.| +|||+||+|+.+...+.. ..+ ++.+.+..
T Consensus 75 ~D~~lLVVda~e---g~~---~qT~ehl~----il~-----~lgi~~iIVVlNKiDlv~~~~~~~-v~~---ei~~~l~~ 135 (614)
T PRK10512 75 IDHALLVVACDD---GVM---AQTREHLA----ILQ-----LTGNPMLTVALTKADRVDEARIAE-VRR---QVKAVLRE 135 (614)
T ss_pred CCEEEEEEECCC---CCc---HHHHHHHH----HHH-----HcCCCeEEEEEECCccCCHHHHHH-HHH---HHHHHHHh
Confidence 999999999983 222 22223321 111 12455 579999999976432221 111 22222211
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
. .....++|++||++|+ |+++|++.|.+...
T Consensus 136 ~--------~~~~~~ii~VSA~tG~-gI~~L~~~L~~~~~ 166 (614)
T PRK10512 136 Y--------GFAEAKLFVTAATEGR-GIDALREHLLQLPE 166 (614)
T ss_pred c--------CCCCCcEEEEeCCCCC-CCHHHHHHHHHhhc
Confidence 1 1123579999999999 99999999987543
No 244
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.57 E-value=8e-14 Score=149.27 Aligned_cols=89 Identities=45% Similarity=0.733 Sum_probs=77.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC---------------------C--ceEEEEecCC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD---------------------F--RKMSVADLPG 481 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~---------------------~--~~~~i~DTpG 481 (654)
.+|+++|.+|+|||||+|+|++......++|++|+++..+.+.+.. . -.+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4799999999999999999999888778899999999988765311 1 2578999999
Q ss_pred CCCCCccccchhHHHHHHhhcccEEEEEEeCC
Q psy1086 482 LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVN 513 (654)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~ 513 (654)
+.+..+...+++..++..++.||++++|+|++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 99888777789999999999999999999997
No 245
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.57 E-value=3.5e-15 Score=156.81 Aligned_cols=163 Identities=23% Similarity=0.277 Sum_probs=121.0
Q ss_pred EeecCcEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecCcccccccccccch-HHHHH
Q psy1086 173 LKLIADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLR 250 (654)
Q Consensus 173 lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~-~~~l~ 250 (654)
|+.|-+++|+|+||||||||||+|++....| .+.|+||++-....+..++ ..+.+.||+|+-+....-+..| .+...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G-~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG-IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC-EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 5678899999999999999999999987764 6999999999999999988 4899999999986554333333 34567
Q ss_pred HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccc
Q psy1086 251 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 330 (654)
Q Consensus 251 ~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~ 330 (654)
.++.+|++++|+|.+.. . +..+... +...-..+|.++|+||.|+........ + +...
T Consensus 293 ~i~~ADlvL~v~D~~~~-------~--~~~d~~~-------~~~~~~~~~~i~v~NK~DL~~~~~~~~-~-~~~~----- 349 (454)
T COG0486 293 AIEEADLVLFVLDASQP-------L--DKEDLAL-------IELLPKKKPIIVVLNKADLVSKIELES-E-KLAN----- 349 (454)
T ss_pred HHHhCCEEEEEEeCCCC-------C--chhhHHH-------HHhcccCCCEEEEEechhcccccccch-h-hccC-----
Confidence 78899999999999841 0 0111111 111225689999999999986543111 1 0000
Q ss_pred cccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
-...+.+|++++ +|++.|.+.|.+.+...
T Consensus 350 ---------------~~~~i~iSa~t~-~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 ---------------GDAIISISAKTG-EGLDALREAIKQLFGKG 378 (454)
T ss_pred ---------------CCceEEEEecCc-cCHHHHHHHHHHHHhhc
Confidence 015899999999 99999999998877654
No 246
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=161.53 Aligned_cols=248 Identities=15% Similarity=0.119 Sum_probs=128.1
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC------------ccE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF------------RKM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~------------~~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|..+ |..|.+.+++. ..+ .+.+.|
T Consensus 20 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----------p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----------PDAGSILIDGQEMRFASTTAALAAGVAIIYQEL 88 (501)
T ss_pred EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----------CCCCEEEECCEECCCCCHHHHHhCCEEEEEech
Confidence 468888888888999999999999999999999633 34444444321 001 111222
Q ss_pred cccccc--cccccchH-----H---HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCccee
Q psy1086 233 GLIEGA--HRNLGMGH-----Q---FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 302 (654)
Q Consensus 233 Gl~~~~--~~~~~l~~-----~---~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~i 302 (654)
.+.... .++..+.. . .....++..-++..+++ .+..+.....+|++++++..+++.+..+|.+
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 89 HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV-------DIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC-------CCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 222110 01100000 0 00001122222222222 2233567789999999999999999999999
Q ss_pred Eee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeeccc----C----ccchHHHHHHHHH
Q psy1086 303 LLV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT----N----STDVNDAKLKIRS 370 (654)
Q Consensus 303 lvl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~----~----~~~i~~L~~~i~~ 370 (654)
+++ +.+|.....+..+.+.+..+. ...+....++....... ...++.+..-. . ...-+++.+.+
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~-- 237 (501)
T PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFAL-CDAITVFKDGRYVATFDDMAQVDRDQLVQAM-- 237 (501)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeecCccccCCHHHHHHHh--
Confidence 999 889988777766666554321 11111111111100000 01222221100 0 00001111100
Q ss_pred HHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 371 ILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
.. .... . .....+ ...+...+...+.+. .....+++|++..|..++++|+||+|||||++.+++.
T Consensus 238 --~~---~~~~--~-~~~~~~--~~~~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 238 --VG---REIG--D-IYGYRP--RPLGEVRLRLDGLKG--PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred --cC---CCcc--c-cccccc--cCCCCcEEEEecccc--CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 00 0000 0 000000 000111222223332 2355689999999999999999999999999999986
No 247
>KOG0927|consensus
Probab=99.56 E-value=3.2e-14 Score=150.42 Aligned_cols=146 Identities=23% Similarity=0.222 Sum_probs=84.1
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecC--ccccccccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLP--GLIEGAHRNLG 243 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~P--Gl~~~~~~~~~ 243 (654)
.+++.|||..+.++||+|+||+||||+|++|.+..+++. ++.+..............+. .+....++...
T Consensus 91 ~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p--------~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~r 162 (614)
T KOG0927|consen 91 IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIP--------EHIDFYLLSREIEPSEKQAVQAVVMETDHERKR 162 (614)
T ss_pred eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCC--------cccchhhhcccCCCchHHHHHHHhhhhHHHHHH
Confidence 468899999999999999999999999999999765432 22222111110000000000 00000000000
Q ss_pred ch---------------HHHHHHHHHH----------HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcC
Q psy1086 244 MG---------------HQFLRHVERT----------KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 298 (654)
Q Consensus 244 l~---------------~~~l~~i~~~----------~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~ 298 (654)
+. ..+....++. .+.-.+... + ..++..+..+.++|++++.+..+++.|+.
T Consensus 163 le~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl-g---f~~~m~~k~~~~~SgGwrmR~aLAr~Lf~ 238 (614)
T KOG0927|consen 163 LEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL-G---FLSEMQDKKVKDLSGGWRMRAALARALFQ 238 (614)
T ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc-C---CCHhHHHHHhhccCchHHHHHHHHHHHhc
Confidence 00 0000000110 011111111 1 12455577788999999999999999999
Q ss_pred cceeEee----cccCccchHhHHHHHHHH
Q psy1086 299 KPIILLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 299 ~P~ilvl----NK~D~~~~~~~~~~l~~~ 323 (654)
+|.++++ |++|+....|+.+++.++
T Consensus 239 kP~LLLLDEPtnhLDleA~~wLee~L~k~ 267 (614)
T KOG0927|consen 239 KPDLLLLDEPTNHLDLEAIVWLEEYLAKY 267 (614)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHHHhc
Confidence 9999999 999998877766665544
No 248
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.55 E-value=3e-14 Score=155.90 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=102.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCcc-------------------------------CCCcccccceeEEEEeCCCc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIA-------------------------------SYPFTTIKPNVGVITFDDFR 472 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~v~~~~~~ 472 (654)
..+|+++|+.++|||||+++|+.....+. -.+++|++.....+.+++ .
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-~ 84 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-Y 84 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-e
Confidence 35899999999999999999985433221 157899999888888876 4
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
++.+|||||+.+ +...+...++.||++++|+|+++. .++..++ .+.+. .+. .....|++||
T Consensus 85 ~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~~-~~~~~~~---~~~~~----~~~----~~~~~~iivv 145 (425)
T PRK12317 85 YFTIVDCPGHRD-------FVKNMITGASQADAAVLVVAADDA-GGVMPQT---REHVF----LAR----TLGINQLIVA 145 (425)
T ss_pred EEEEEECCCccc-------chhhHhhchhcCCEEEEEEEcccC-CCCCcch---HHHHH----HHH----HcCCCeEEEE
Confidence 899999999644 333344557899999999999831 1222221 11111 111 1112468999
Q ss_pred EeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHH
Q psy1086 553 VNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 614 (654)
Q Consensus 553 ~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~ 614 (654)
+||+|+.+. .+......+.+. +.+..++.. ....++|++||++|. ||+++++
T Consensus 146 iNK~Dl~~~~~~~~~~~~~~i~---~~l~~~g~~------~~~~~ii~iSA~~g~-gi~~~~~ 198 (425)
T PRK12317 146 INKMDAVNYDEKRYEEVKEEVS---KLLKMVGYK------PDDIPFIPVSAFEGD-NVVKKSE 198 (425)
T ss_pred EEccccccccHHHHHHHHHHHH---HHHHhhCCC------cCcceEEEeecccCC-Ccccccc
Confidence 999999752 222222222222 222111100 113579999999999 9998764
No 249
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.55 E-value=1.4e-13 Score=154.57 Aligned_cols=174 Identities=20% Similarity=0.293 Sum_probs=103.9
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC------C-------C----ceEEEEecCCCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD------D-------F----RKMSVADLPGLIEG 485 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~------~-------~----~~~~i~DTpG~~~~ 485 (654)
+.+.|+++|+.++|||||+++|.+.........++|.+.....+.++ + . ..+.+|||||+.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~- 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA- 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH-
Confidence 44689999999999999999998764332222222221111000000 0 0 1278999999644
Q ss_pred CccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh----
Q psy1086 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA---- 561 (654)
Q Consensus 486 ~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~---- 561 (654)
+...+.+.++.+|++++|+|+++ ++ ..++++.+..+ . ..+.|+++++||+|+...
T Consensus 84 ------f~~~~~~~~~~aD~~IlVvDa~~---g~---~~qt~e~i~~~----~-----~~~vpiIvviNK~D~~~~~~~~ 142 (586)
T PRK04004 84 ------FTNLRKRGGALADIAILVVDINE---GF---QPQTIEAINIL----K-----RRKTPFVVAANKIDRIPGWKST 142 (586)
T ss_pred ------HHHHHHHhHhhCCEEEEEEECCC---CC---CHhHHHHHHHH----H-----HcCCCEEEEEECcCCchhhhhh
Confidence 44455577889999999999983 22 23344433221 1 146899999999998521
Q ss_pred -------------HHHHHHHHHHHHhhHhhhccCCCCCCc------cccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 562 -------------QEIYDGIRDTLHNLKDHIHKYPEEFQP------EKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 562 -------------~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+...+.+.+.++...+... .+.+ ..+....+++++||++|+ |+++|++.+....+
T Consensus 143 ~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~--g~~~e~~~~~~~~~~~v~ivpiSA~tGe-Gi~dLl~~i~~~~~ 218 (586)
T PRK04004 143 EDAPFLESIEKQSQRVQQELEEKLYELIGQLSEL--GFSADRFDRVKDFTKTVAIVPVSAKTGE-GIPDLLMVLAGLAQ 218 (586)
T ss_pred cCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc--CCChhhhhhhhccCCCceEeeccCCCCC-ChHHHHHHHHHHHH
Confidence 111222222233333333222 1111 123456789999999999 99999998765443
No 250
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=1.1e-13 Score=156.01 Aligned_cols=160 Identities=18% Similarity=0.238 Sum_probs=106.7
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCcc---------------CCCcccccceeEEEEeC---C-CceEEEEecCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIA---------------SYPFTTIKPNVGVITFD---D-FRKMSVADLPGLI 483 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~---------------~~~~~t~~~~~~~v~~~---~-~~~~~i~DTpG~~ 483 (654)
+..+++++|+.++|||||+.+|+.....+. ...++|.......+.|. + ...+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 446899999999999999999987422110 13466666666666663 1 2378999999965
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE 563 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~ 563 (654)
+ +...+.++++.||++++|+|++.. ...++...|.... ..+.|+|+|+||+|+.+...
T Consensus 86 d-------F~~~v~~sl~~aD~aILVVDas~g---------v~~qt~~~~~~~~------~~~lpiIvViNKiDl~~a~~ 143 (600)
T PRK05433 86 D-------FSYEVSRSLAACEGALLVVDASQG---------VEAQTLANVYLAL------ENDLEIIPVLNKIDLPAADP 143 (600)
T ss_pred H-------HHHHHHHHHHHCCEEEEEEECCCC---------CCHHHHHHHHHHH------HCCCCEEEEEECCCCCcccH
Confidence 4 556677899999999999999832 1223333333222 13689999999999865321
Q ss_pred HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 564 IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+.+. +.+. + ....++++||++|. ||++|++.|.+.+-
T Consensus 144 --~~v~~ei~---~~lg-----~------~~~~vi~iSAktG~-GI~~Ll~~I~~~lp 184 (600)
T PRK05433 144 --ERVKQEIE---DVIG-----I------DASDAVLVSAKTGI-GIEEVLEAIVERIP 184 (600)
T ss_pred --HHHHHHHH---HHhC-----C------CcceEEEEecCCCC-CHHHHHHHHHHhCc
Confidence 11111121 1110 0 11247999999999 99999999987663
No 251
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.55 E-value=1.9e-14 Score=141.46 Aligned_cols=162 Identities=27% Similarity=0.369 Sum_probs=108.4
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccc-cchHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHVER 254 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~-~l~~~~l~~i~~ 254 (654)
..+|+|+|++|||||||++.|++....+.+++++|..+..+.+.+.+...+.++|+||+.+...... ......+.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 120 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAE 120 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhc
Confidence 3589999999999999999999987677788899999999888887655799999999864322110 001112233456
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
+|.+++|+|++.. ............+..+. ....|.++|+||+|+....... .....
T Consensus 121 ~d~ii~v~D~~~~---------~~~~~~~~~~~~l~~~~--~~~~~viiV~NK~Dl~~~~~~~----~~~~~-------- 177 (204)
T cd01878 121 ADLLLHVVDASDP---------DYEEQIETVEKVLKELG--AEDIPMILVLNKIDLLDDEELE----ERLEA-------- 177 (204)
T ss_pred CCeEEEEEECCCC---------ChhhHHHHHHHHHHHcC--cCCCCEEEEEEccccCChHHHH----HHhhc--------
Confidence 7788888888631 11122222222222221 2357999999999997654322 11110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
...+++.+||+++ .|++++++.|.+.
T Consensus 178 ----------~~~~~~~~Sa~~~-~gi~~l~~~L~~~ 203 (204)
T cd01878 178 ----------GRPDAVFISAKTG-EGLDELLEAIEEL 203 (204)
T ss_pred ----------CCCceEEEEcCCC-CCHHHHHHHHHhh
Confidence 0136899999999 9999999888653
No 252
>KOG1532|consensus
Probab=99.55 E-value=1.2e-13 Score=134.16 Aligned_cols=164 Identities=14% Similarity=0.153 Sum_probs=108.7
Q ss_pred eEEEEecCCCCCC-Cccccchh-HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEE
Q psy1086 473 KMSVADLPGLIEG-AHRNLGMG-HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 550 (654)
Q Consensus 473 ~~~i~DTpG~~~~-~~~~~~~~-~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~i 550 (654)
++.++||||+++- .+...+.. ..+ ..-...-++++|+|..... +.-.|= . ..............|+|
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~-lass~ptvv~YvvDt~rs~------~p~tFM--S--NMlYAcSilyktklp~i 185 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITET-LASSFPTVVVYVVDTPRST------SPTTFM--S--NMLYACSILYKTKLPFI 185 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhh-HhhcCCeEEEEEecCCcCC------CchhHH--H--HHHHHHHHHHhccCCeE
Confidence 5899999999754 23333211 111 1123567889999975321 111111 1 11122222344679999
Q ss_pred EEEeCCCccChHHHHHHHHHHHHhhHhhhccC----------CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 551 LLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY----------PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 551 iv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+|+||+|+.+..-..+|+. .++++++.+... .+++..++||.....+.|||.||. |.+++|..|.+.+
T Consensus 186 vvfNK~Dv~d~~fa~eWm~-DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~-G~ddf~~av~~~v 263 (366)
T KOG1532|consen 186 VVFNKTDVSDSEFALEWMT-DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE-GFDDFFTAVDESV 263 (366)
T ss_pred EEEecccccccHHHHHHHH-HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC-cHHHHHHHHHHHH
Confidence 9999999987665555544 466666665532 222334778999999999999999 9999999999999
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHhhh
Q psy1086 621 DLLAEEEQEMVDRELELVKKLKSSLREHQ 649 (654)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (654)
++-..++.++-++.++.-++++++.++.+
T Consensus 264 dEy~~~ykp~~Ek~k~~k~~~ee~~k~k~ 292 (366)
T KOG1532|consen 264 DEYEEEYKPEYEKKKAEKRLAEEERKKKQ 292 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 99999999988888877666666654443
No 253
>KOG0393|consensus
Probab=99.55 E-value=1.1e-14 Score=138.22 Aligned_cols=171 Identities=17% Similarity=0.105 Sum_probs=119.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC-CCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD-DFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~-~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.|++++|+..+|||+++..+..+.+.....|+.. +.....+.++ +.. .+.+|||+|++++....+ ..|+.
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRp-------lsY~~ 76 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRP-------LSYPQ 76 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccc-------cCCCC
Confidence 5899999999999999999998866666666554 7777788885 432 578999999988865333 36889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
+|+++++|++. ++.+++.+. .|..|+..+- .+.|+|||++|.||-++....+.+...-.+ ..+
T Consensus 77 tdvfl~cfsv~---------~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~----~Vt 140 (198)
T KOG0393|consen 77 TDVFLLCFSVV---------SPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDDPSTLEKLQRQGLE----PVT 140 (198)
T ss_pred CCEEEEEEEcC---------ChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhCHHHHHHHHhccCC----ccc
Confidence 99999999998 677888744 5777776554 579999999999997543332222210000 000
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+......+....-..|+++||++.. |+.+.|+...+..
T Consensus 141 ~~~g~~lA~~iga~~y~EcSa~tq~-~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 141 YEQGLELAKEIGAVKYLECSALTQK-GVKEVFDEAIRAA 178 (198)
T ss_pred HHHHHHHHHHhCcceeeeehhhhhC-CcHHHHHHHHHHH
Confidence 0000000112233468999999999 9999999877655
No 254
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.55 E-value=1.4e-13 Score=126.61 Aligned_cols=154 Identities=21% Similarity=0.160 Sum_probs=99.8
Q ss_pred EEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC-CceEEEEecCCCCCCCccccchhHHHHHHhhcccEEE
Q psy1086 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIA 507 (654)
Q Consensus 429 ~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~-~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~i 507 (654)
++|++|+|||||++++.+.........++..+.......... ...+.+|||||+.... .....+++.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-------SLRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHH-------hHHHHHhcCCCEEE
Confidence 479999999999999998766322222233444444444321 2478999999965432 22346788999999
Q ss_pred EEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHH-HHHHHhhHhhhccCCCCC
Q psy1086 508 MIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGI-RDTLHNLKDHIHKYPEEF 586 (654)
Q Consensus 508 lV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~-~~~~~~~~~~~~~~~~~~ 586 (654)
+|+|++ +....+....|.... .......+.|+++|+||+|+.......... .....
T Consensus 74 ~v~d~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~------------- 130 (157)
T cd00882 74 LVYDVT---------DRESFENVKEWLLLI-LINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA------------- 130 (157)
T ss_pred EEEECc---------CHHHHHHHHHHHHHH-HHhhccCCCcEEEEEeccccccccchHHHHHHHHHH-------------
Confidence 999998 334444444442111 112234579999999999987553322211 11111
Q ss_pred CccccccccceEEEeeecCCCChHHHHHHHH
Q psy1086 587 QPEKVIKFQSILPISAKTNSTDVNDAKLKIR 617 (654)
Q Consensus 587 ~~~~~~~~~~~~~vSAktg~~gv~el~~~i~ 617 (654)
.....+++++||+++. |+.++++.|.
T Consensus 131 ----~~~~~~~~~~s~~~~~-~i~~~~~~l~ 156 (157)
T cd00882 131 ----KELGVPYFETSAKTGE-NVEELFEELA 156 (157)
T ss_pred ----hhcCCcEEEEecCCCC-ChHHHHHHHh
Confidence 1234579999999999 9999999875
No 255
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.54 E-value=9e-15 Score=152.78 Aligned_cols=120 Identities=33% Similarity=0.500 Sum_probs=102.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCc----------------cEEEEecCcccccccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGAHR 240 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~----------------~~~i~D~PGl~~~~~~ 240 (654)
.+||||.||+|||||+++|++..+ .+++|||||..|+.|++.+.+.+ .+.+.|+||++.+++.
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~ 83 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASK 83 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhc
Confidence 689999999999999999999999 99999999999999999987632 5789999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHhhcccCcccCCCC--CccChHHHHHHHHHHHHHHhHhhcC
Q psy1086 241 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH--PKRSCVETVLLLNKELELYKMNLLE 298 (654)
Q Consensus 241 ~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~--~~~~~~~~l~~~~~el~~~~~~l~~ 298 (654)
+.+++.+|+.|++.+|++++|+++.... .+.| ...+|..++..++.|+..+...+..
T Consensus 84 g~Glgn~fL~~ir~~d~l~hVvr~f~d~-~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~e 142 (368)
T TIGR00092 84 GEGLGNQFLANIREVDIIQHVVRCFEDD-IIHHVGNVDDPRDDFEIIDEELLKADEFLVE 142 (368)
T ss_pred ccCcchHHHHHHHhCCEEEEEEeCCCCc-ccCccCCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999986421 1222 2256889999999998887765433
No 256
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.54 E-value=3.4e-14 Score=140.35 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=118.3
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccC--CCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHH----H
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIAS--YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLR----H 499 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~--~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~----~ 499 (654)
+|+++|.+|+||||++|.+++...+.+. ....|..+......+++ +.+.++||||+.+.............+ +
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g-~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG-RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT-EEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc-eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 7899999999999999999999887654 45667777777777777 689999999997765544444444444 3
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHH-HhhHhh
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTL-HNLKDH 578 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~-~~~~~~ 578 (654)
..+.|++++|++++.+ ++.++..++.+..++. ......+|||++.+|......+.+.+.+.. ..++++
T Consensus 81 ~~g~ha~llVi~~~r~----t~~~~~~l~~l~~~FG-------~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~l 149 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRF----TEEDREVLELLQEIFG-------EEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQEL 149 (212)
T ss_dssp TT-ESEEEEEEETTB-----SHHHHHHHHHHHHHHC-------GGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEecCcc----hHHHHHHHHHHHHHcc-------HHHHhHhhHHhhhccccccccHHHHHhccCchhHhHH
Confidence 4578999999998743 3333333333332222 123467999999999877666666665443 357888
Q ss_pred hccCCCCCCccccccccceEEEe----eecCCCChHHHHHHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPIS----AKTNSTDVNDAKLKIRSILDLLAE 625 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vS----Aktg~~gv~el~~~i~~~~~~~~~ 625 (654)
++.|+.+| .+|... ++... ++.+|++.|.+++++...
T Consensus 150 i~~c~~R~---------~~f~n~~~~~~~~~~-qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 150 IEKCGGRY---------HVFNNKTKDKEKDES-QVSELLEKIEEMVQENGG 190 (212)
T ss_dssp HHHTTTCE---------EECCTTHHHHHHHHH-HHHHHHHHHHHHHHHTTT
T ss_pred hhhcCCEE---------EEEeccccchhhhHH-HHHHHHHHHHHHHHHcCC
Confidence 88899888 234433 23344 899999999999987643
No 257
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.54 E-value=2e-14 Score=160.37 Aligned_cols=260 Identities=14% Similarity=0.074 Sum_probs=130.5
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCcc-----------E-EEEecCcc
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRK-----------M-SVADLPGL 234 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~-----------~-~i~D~PGl 234 (654)
.+++|++..|+.++|+|+||||||||+++|+|.. .|..|.+.+++... + .+.+.|..
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-----------~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-----------PLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNT 88 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-----------CCCCceEEECCcccccCCHHHHHHHhceeccCcch
Confidence 4667777777789999999999999999999953 34445444432100 0 01111110
Q ss_pred --cccccccccc-hHHHH----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee--
Q psy1086 235 --IEGAHRNLGM-GHQFL----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV-- 305 (654)
Q Consensus 235 --~~~~~~~~~l-~~~~l----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl-- 305 (654)
.........+ ..+.+ ...+++..++..+++. +..+.+...+|++++++..++..+...|.++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 89 DMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGIT-------ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred hhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCH-------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 0000000000 00100 0112222222223322 234567789999999999999999999999999
Q ss_pred --cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeeccc--CccchHHHHH-HHHHHHHHhHh-HH
Q psy1086 306 --NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT--NSTDVNDAKL-KIRSILDLLAE-EE 379 (654)
Q Consensus 306 --NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~--~~~~i~~L~~-~i~~~l~~~~~-~~ 379 (654)
+.+|.....+..+.+.+..+. ...+....+....-.. -...++.+..-. .....+++.. ...+.+..... ..
T Consensus 162 Pt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (490)
T PRK10938 162 PFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPD-FVQFAGVLADCTLAETGEREEILQQALVAQLAHSEQLEG 239 (490)
T ss_pred CcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHh-hCCEEEEEECCEEEEeCCHHHHhcchhhhhhhhhhccCc
Confidence 889988877777766655332 1111111121111000 001222222100 0001122111 00000000000 00
Q ss_pred H-hhhhhhhhhhHHHHhhCCCccccCCCcccCCC--cceeeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 380 Q-EMVDRELELDSIIIAHGGAGGNAQNGWLGRKG--EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 380 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
. .........+ .........+...+.++.+.. ...+++|++..|..++++|+||+|||||++.+++.
T Consensus 240 ~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 240 VQLPEPDEPSAR-HALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred cccCcccccccc-cccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 0 0000000000 000012223444555554432 34589999999999999999999999999999984
No 258
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.54 E-value=1.1e-13 Score=137.46 Aligned_cols=158 Identities=22% Similarity=0.261 Sum_probs=97.5
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCC-------------------------c------cCCCcccccceeEEEEeCCCceE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPK-------------------------I------ASYPFTTIKPNVGVITFDDFRKM 474 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~-------------------------~------~~~~~~t~~~~~~~v~~~~~~~~ 474 (654)
.|+++|+.++|||||+.+|+..... . ....++|++.....+.+++ .++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~-~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK-YRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC-eEE
Confidence 3789999999999999998643110 0 1156788888888888877 589
Q ss_pred EEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCccc--CCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 475 SVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQL--GLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 475 ~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~--~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
.+|||||+.+ +...+..+++.+|++++|+|+++... .+. ...+ ....+. ... ....+|+|+|
T Consensus 80 ~liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~-~~~~---~~~~~~-~~~----~~~~~~iiiv 143 (219)
T cd01883 80 TILDAPGHRD-------FVPNMITGASQADVAVLVVDARKGEFEAGFE-KGGQ---TREHAL-LAR----TLGVKQLIVA 143 (219)
T ss_pred EEEECCChHH-------HHHHHHHHhhhCCEEEEEEECCCCccccccc-cccc---hHHHHH-HHH----HcCCCeEEEE
Confidence 9999999533 44556677888999999999984210 000 0111 111111 111 1123689999
Q ss_pred EeCCCccCh---HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChH
Q psy1086 553 VNKMDVEGA---QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVN 610 (654)
Q Consensus 553 ~NK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~ 610 (654)
+||+|+... ......+.+.+.+ .+...+ + .....+++++||++|. ||+
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~l~~---~l~~~~--~----~~~~~~ii~iSA~tg~-gi~ 194 (219)
T cd01883 144 VNKMDDVTVNWSEERYDEIKKELSP---FLKKVG--Y----NPKDVPFIPISGLTGD-NLI 194 (219)
T ss_pred EEccccccccccHHHHHHHHHHHHH---HHHHcC--C----CcCCceEEEeecCcCC-CCC
Confidence 999999732 2222223322222 221110 0 0123579999999999 987
No 259
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.53 E-value=5.9e-14 Score=160.50 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=84.7
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC---------------------
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--------------------- 223 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~--------------------- 223 (654)
-..+|+|++..|+.+||||+||||||||+++|+|..+ |..|.+.+++.
T Consensus 31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----------p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 99 (623)
T PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----------QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMR 99 (623)
T ss_pred EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----------CCCeEEEECCEEeccccccccccccCCHHHHH
Confidence 3568999999999999999999999999999999633 33344333210
Q ss_pred ----ccE-EEEecC--cccccc--cccccchHHH------HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHH
Q psy1086 224 ----RKM-SVADLP--GLIEGA--HRNLGMGHQF------LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKE 288 (654)
Q Consensus 224 ----~~~-~i~D~P--Gl~~~~--~~~~~l~~~~------l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~e 288 (654)
..+ .+...| .+.... .++..+.... ....+++.-++..+++... .+..+....++|+++++
T Consensus 100 ~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----~~~~~~~~~~LSgGq~Q 175 (623)
T PRK10261 100 HVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA----QTILSRYPHQLSGGMRQ 175 (623)
T ss_pred HHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh----hhHHhCCCccCCHHHHH
Confidence 001 011111 111100 0111000000 0011122222222333110 01234566889999999
Q ss_pred HHHHhHhhcCcceeEee----cccCccchHhHHHHHHHHH
Q psy1086 289 LELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 289 l~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
+..++.++...|.++++ +.+|.....+..+.+++..
T Consensus 176 Rv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~ 215 (623)
T PRK10261 176 RVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ 215 (623)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHH
Confidence 99999999999999999 8899887766666655543
No 260
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.52 E-value=3.2e-13 Score=127.54 Aligned_cols=161 Identities=19% Similarity=0.253 Sum_probs=94.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCc--cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc---ccchhHHHHHHh
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKI--ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR---NLGMGHQFLRHV 500 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~--~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~---~~~~~~~~~~~~ 500 (654)
.|+++|.+|+|||||++.+++..... +..++.|... ..+..+. .+.+|||||+...... ...+...+..++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI--NFFNVND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE--EEEEccC--eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 37899999999999999999544432 2333333322 2233333 7899999997554221 111222233344
Q ss_pred h---cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHh
Q psy1086 501 E---RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKD 577 (654)
Q Consensus 501 ~---~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~ 577 (654)
. .++.+++|+|++... ...... +..++.. .+.|+++|+||+|+............ . ..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~-------~~~~~~---~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~-~---~~ 137 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGP-------TEIDLE---MLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKE-I---KK 137 (170)
T ss_pred HhChhhhEEEEEEEcCcCC-------CHhHHH---HHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHH-H---HH
Confidence 3 467899999987310 011111 2222321 25899999999998654332221111 1 11
Q ss_pred hhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.+.. .....+++++||+++. ++.++++.|.+.
T Consensus 138 ~l~~---------~~~~~~~~~~Sa~~~~-~~~~l~~~l~~~ 169 (170)
T cd01876 138 ELKL---------FEIDPPIILFSSLKGQ-GIDELRALIEKW 169 (170)
T ss_pred HHHh---------ccCCCceEEEecCCCC-CHHHHHHHHHHh
Confidence 1100 1223468999999999 999999999875
No 261
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.52 E-value=1.2e-13 Score=150.95 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=101.4
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc-------------------------------cCCCcccccceeEEEEeCCCc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI-------------------------------ASYPFTTIKPNVGVITFDDFR 472 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~v~~~~~~ 472 (654)
..+|+++|+.++|||||+.+|+.....+ ....++|.+.....+.+++ .
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~-~ 85 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK-Y 85 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC-e
Confidence 3579999999999999999998632111 0145778888877777776 4
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
.+.+|||||+. .+...+..+++.+|++++|+|+++.. .....+..+.+ . +. . .....|+|||
T Consensus 86 ~i~iiDtpGh~-------~f~~~~~~~~~~aD~~ilVvDa~~~~---~~~~~~t~~~~----~-~~--~-~~~~~~iIVv 147 (426)
T TIGR00483 86 EVTIVDCPGHR-------DFIKNMITGASQADAAVLVVAVGDGE---FEVQPQTREHA----F-LA--R-TLGINQLIVA 147 (426)
T ss_pred EEEEEECCCHH-------HHHHHHHhhhhhCCEEEEEEECCCCC---cccCCchHHHH----H-HH--H-HcCCCeEEEE
Confidence 89999999953 34455566788999999999998431 00011111111 0 11 1 1123579999
Q ss_pred EeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHH
Q psy1086 553 VNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 614 (654)
Q Consensus 553 ~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~ 614 (654)
+||+|+.+. ++..+...+.+.+ .+...+ + .....+++++||++|. ||++++.
T Consensus 148 iNK~Dl~~~~~~~~~~~~~ei~~---~~~~~g--~----~~~~~~~i~iSA~~g~-ni~~~~~ 200 (426)
T TIGR00483 148 INKMDSVNYDEEEFEAIKKEVSN---LIKKVG--Y----NPDTVPFIPISAWNGD-NVIKKSE 200 (426)
T ss_pred EEChhccCccHHHHHHHHHHHHH---HHHHcC--C----CcccceEEEeeccccc-ccccccc
Confidence 999999742 2222222222222 222111 0 0123579999999999 9998664
No 262
>PRK00089 era GTPase Era; Reviewed
Probab=99.52 E-value=3.6e-14 Score=147.62 Aligned_cols=163 Identities=26% Similarity=0.388 Sum_probs=109.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCcccccccc-cccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~-~~~l~~~~l~~i~~~ 255 (654)
.|+|+|+||||||||+|.|+|.+.. +.+.|.||.....|....++ .+++++||||+...... +..+.......+..+
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999998764 45678888888777776544 58999999998654321 122233445566778
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccc-hHhHHHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG-AQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~-~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
|++++|+|+... ... . ..++..... ....|.++|+||+|+.. .......+ +.+...
T Consensus 86 D~il~vvd~~~~-------~~~---~----~~~i~~~l~-~~~~pvilVlNKiDl~~~~~~l~~~~-~~l~~~------- 142 (292)
T PRK00089 86 DLVLFVVDADEK-------IGP---G----DEFILEKLK-KVKTPVILVLNKIDLVKDKEELLPLL-EELSEL------- 142 (292)
T ss_pred CEEEEEEeCCCC-------CCh---h----HHHHHHHHh-hcCCCEEEEEECCcCCCCHHHHHHHH-HHHHhh-------
Confidence 888999988631 011 1 111111111 13679999999999973 33333222 222210
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+..++++||+++ .+++++++.+.+.++.
T Consensus 143 ---------~~~~~i~~iSA~~~-~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 143 ---------MDFAEIVPISALKG-DNVDELLDVIAKYLPE 172 (292)
T ss_pred ---------CCCCeEEEecCCCC-CCHHHHHHHHHHhCCC
Confidence 11247899999999 9999999999877643
No 263
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.2e-13 Score=138.70 Aligned_cols=93 Identities=41% Similarity=0.756 Sum_probs=85.1
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-----------------eEEEEecCCCCCCC
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------------KMSVADLPGLIEGA 486 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-----------------~~~i~DTpG~~~~~ 486 (654)
..+++++|.||||||||+|.++.......++|++|++|..+.+.+.+.+ .+.++|.||+.++.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3589999999999999999999998777899999999999999887643 58899999999999
Q ss_pred ccccchhHHHHHHhhcccEEEEEEeCCCcc
Q psy1086 487 HRNLGMGHQFLRHVERTKLIAMIVDVNGFQ 516 (654)
Q Consensus 487 ~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~ 516 (654)
+..++++++|+..+|.+|++++|+|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d~ 111 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGDT 111 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCCC
Confidence 999999999999999999999999998544
No 264
>PRK09866 hypothetical protein; Provisional
Probab=99.51 E-value=1.3e-12 Score=142.45 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=72.6
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
++.++||||+.+.... .+.....+.+..||++++|+|++.. ++..++ .+.+.+.. ...+.|+++|
T Consensus 231 QIIFVDTPGIhk~~~~--~L~k~M~eqL~eADvVLFVVDat~~---~s~~De-------eIlk~Lkk---~~K~~PVILV 295 (741)
T PRK09866 231 QLTLLDTPGPNEAGQP--HLQKMLNQQLARASAVLAVLDYTQL---KSISDE-------EVREAILA---VGQSVPLYVL 295 (741)
T ss_pred CEEEEECCCCCCccch--HHHHHHHHHHhhCCEEEEEEeCCCC---CChhHH-------HHHHHHHh---cCCCCCEEEE
Confidence 6899999998654321 2344445689999999999999731 111111 12222221 1112599999
Q ss_pred EeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 553 VNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 553 ~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
+||+|+.+. ....+.+.+.+.. .+.. ....+..+|||||++|. |+++|++.|..
T Consensus 296 VNKIDl~dreeddkE~Lle~V~~---~L~q--------~~i~f~eIfPVSAlkG~-nid~LLdeI~~ 350 (741)
T PRK09866 296 VNKFDQQDRNSDDADQVRALISG---TLMK--------GCITPQQIFPVSSMWGY-LANRARHELAN 350 (741)
T ss_pred EEcccCCCcccchHHHHHHHHHH---HHHh--------cCCCCceEEEEeCCCCC-CHHHHHHHHHh
Confidence 999998642 1112222222211 1100 11345679999999999 99999999987
No 265
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=4.5e-13 Score=126.52 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=109.8
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcC--CCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc---cccchhHHHHH
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRAR--PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH---RNLGMGHQFLR 498 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~---~~~~~~~~~~~ 498 (654)
.+-|+++|.+||||||++|+|++.. ...+..||.|..... +.+++ .+.++|.||+--..- ..+........
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--f~~~~--~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--FEVDD--ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE--EEecC--cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 4579999999999999999999976 455778988877654 45555 488999999742211 11223344456
Q ss_pred Hhh---cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhh
Q psy1086 499 HVE---RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 575 (654)
Q Consensus 499 ~~~---~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~ 575 (654)
|+. .-.++++++|+.++. .+.|+ ++.+++.. .++|++||+||+|..+..+..+.+.....+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~---~~~D~-------em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~- 163 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPP---KDLDR-------EMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEE- 163 (200)
T ss_pred HHhhchhheEEEEEEECCCCC---cHHHH-------HHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHH-
Confidence 664 357889999998532 22222 23333332 479999999999998765544333322222
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+.... .....++..|+.+++ |+++|...|.+.+.+
T Consensus 164 ---l~~~~--------~~~~~~~~~ss~~k~-Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 164 ---LKKPP--------PDDQWVVLFSSLKKK-GIDELKAKILEWLKE 198 (200)
T ss_pred ---hcCCC--------CccceEEEEeccccc-CHHHHHHHHHHHhhc
Confidence 11100 111127788999998 999999999887653
No 266
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.2e-13 Score=144.05 Aligned_cols=165 Identities=19% Similarity=0.261 Sum_probs=122.5
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC--CCceEEEEecCCCCCCCccccchhHHHHHHh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD--DFRKMSVADLPGLIEGAHRNLGMGHQFLRHV 500 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~--~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~ 500 (654)
+.+-|.++|+-.-|||||+..+.+........-++|.+--..++.++ +...+.++|||| ++.|..+..+-.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG-------HeAFt~mRaRGa 76 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG-------HEAFTAMRARGA 76 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCc-------HHHHHHHHhcCC
Confidence 34678999999999999999999988877777888888877788876 335899999999 555666655666
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH--HHHHHHHHHHHhhHhh
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EIYDGIRDTLHNLKDH 578 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~--~v~~~~~~~~~~~~~~ 578 (654)
.-+|+++||+|+.+ ++..| +.|.+... ...+.|+||+.||+|.++.. .+..++. + +
T Consensus 77 ~vtDIaILVVa~dD---Gv~pQ---TiEAI~ha---------k~a~vP~iVAiNKiDk~~~np~~v~~el~----~---~ 134 (509)
T COG0532 77 SVTDIAILVVAADD---GVMPQ---TIEAINHA---------KAAGVPIVVAINKIDKPEANPDKVKQELQ----E---Y 134 (509)
T ss_pred ccccEEEEEEEccC---Ccchh---HHHHHHHH---------HHCCCCEEEEEecccCCCCCHHHHHHHHH----H---c
Confidence 78899999999983 44433 23333211 22579999999999998542 2222211 1 1
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.+.++.+.....++|+||++|+ |+++|++.+.-+.+..
T Consensus 135 ------gl~~E~~gg~v~~VpvSA~tg~-Gi~eLL~~ill~aev~ 172 (509)
T COG0532 135 ------GLVPEEWGGDVIFVPVSAKTGE-GIDELLELILLLAEVL 172 (509)
T ss_pred ------CCCHhhcCCceEEEEeeccCCC-CHHHHHHHHHHHHHHH
Confidence 3455666777889999999999 9999999987665543
No 267
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.51 E-value=5.8e-13 Score=133.62 Aligned_cols=112 Identities=23% Similarity=0.338 Sum_probs=78.5
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc------------------CCCcccccceeEEEEeCCCceEEEEecCCCCCCCc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA------------------SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~------------------~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~ 487 (654)
+|+++|+.|+|||||+++|+.....+. ...++|.......+.+++ .++.+|||||+.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~-~~i~liDTPG~~~--- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED-TKVNLIDTPGHMD--- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC-EEEEEEeCCCccc---
Confidence 378999999999999999987532211 122344445556677776 4899999999644
Q ss_pred cccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccC
Q psy1086 488 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG 560 (654)
Q Consensus 488 ~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~ 560 (654)
+...+..+++.+|++++|+|+++. + .. ....+...+. ..++|+++++||+|+..
T Consensus 77 ----f~~~~~~~l~~aD~~IlVvd~~~g---~------~~-~~~~~~~~~~-----~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 77 ----FIAEVERSLSVLDGAILVISAVEG---V------QA-QTRILWRLLR-----KLNIPTIIFVNKIDRAG 130 (237)
T ss_pred ----hHHHHHHHHHHhCeEEEEEeCCCC---C------CH-HHHHHHHHHH-----HcCCCEEEEEECccccC
Confidence 555677899999999999999832 1 11 1222333232 24689999999999874
No 268
>KOG0070|consensus
Probab=99.51 E-value=1.7e-13 Score=126.72 Aligned_cols=157 Identities=24% Similarity=0.342 Sum_probs=114.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|-.++||||++..+.-.+.... .| |+.+....+.+.+. .+.+||..|+.+ ++..|..|++..+
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt-vP--TiGfnVE~v~ykn~-~f~vWDvGGq~k-------~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-VP--TIGFNVETVEYKNI-SFTVWDVGGQEK-------LRPLWKHYFQNTQ 86 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC-CC--ccccceeEEEEcce-EEEEEecCCCcc-------cccchhhhccCCc
Confidence 5899999999999999999877655443 44 56778888888874 899999999644 4556778999999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcc--cCCCCEEEEEeCCCccChHH---HHHHHHHHHHhhHhhh
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQE---IYDGIRDTLHNLKDHI 579 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~--~~~~p~iiv~NK~Dl~~~~~---v~~~~~~~~~~~~~~~ 579 (654)
++|+|+|.++ + +.+.+..+++...... ..+.|+++.+||.|++++-. +.+.+. +..++.
T Consensus 87 ~lIfVvDS~D---------r---~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~--l~~l~~-- 150 (181)
T KOG0070|consen 87 GLIFVVDSSD---------R---ERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG--LHSLRS-- 150 (181)
T ss_pred EEEEEEeCCc---------H---HHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhh--hhccCC--
Confidence 9999999983 3 3444455555544322 35799999999999986532 222222 222211
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+ .+-.++|.+|+ |+.|-++.+.+.++.
T Consensus 151 ----~~w---------~iq~~~a~~G~-GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 151 ----RNW---------HIQSTCAISGE-GLYEGLDWLSNNLKK 179 (181)
T ss_pred ----CCc---------EEeeccccccc-cHHHHHHHHHHHHhc
Confidence 111 36789999999 999999999887653
No 269
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.51 E-value=1.8e-13 Score=154.13 Aligned_cols=261 Identities=16% Similarity=0.088 Sum_probs=132.0
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------------cE-EEE
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------------KM-SVA 229 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------------~~-~i~ 229 (654)
..+++|++..|+.++|+|+||||||||+++|+|..+... ..|..|.+.+++.. .+ .+.
T Consensus 25 l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 98 (529)
T PRK15134 25 VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPP------VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIF 98 (529)
T ss_pred eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc------CCccceEEEECCEecccCCHHHHHHHhcCceEEEe
Confidence 468899999999999999999999999999999643200 01234555543310 00 001
Q ss_pred ecCc--ccccc--cccccchHHH------HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCc
Q psy1086 230 DLPG--LIEGA--HRNLGMGHQF------LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEK 299 (654)
Q Consensus 230 D~PG--l~~~~--~~~~~l~~~~------l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~ 299 (654)
+-|. +.... .++..+.... ....+++..++..+++... .+..+.....+|++++++..+++++..+
T Consensus 99 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----~~~~~~~~~~LSgGe~qrv~iAraL~~~ 174 (529)
T PRK15134 99 QEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA----AKRLTDYPHQLSGGERQRVMIAMALLTR 174 (529)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh----HHHHhhCCcccCHHHHHHHHHHHHHhcC
Confidence 1110 00000 0000000000 0001122222222222210 0012456689999999999999999999
Q ss_pred ceeEee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeeccc--CccchHHHHHH-----H
Q psy1086 300 PIILLV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT--NSTDVNDAKLK-----I 368 (654)
Q Consensus 300 P~ilvl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~--~~~~i~~L~~~-----i 368 (654)
|.++++ +.+|.....+..+.+.+...+....+....+....... -..+++.+..-. .....++++.. .
T Consensus 175 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~ 253 (529)
T PRK15134 175 PELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK-LADRVAVMQNGRCVEQNRAATLFSAPTHPYT 253 (529)
T ss_pred CCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH-hcCEEEEEECCEEEEeCCHHHHhhCCCCHHH
Confidence 999999 88998877777666665432211111111111111000 011233322100 00011122110 0
Q ss_pred HHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCC-------------CcceeeeeeecccceEEEEcCCCC
Q psy1086 369 RSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRK-------------GEELAVRLELKLIADIGLVGFPNA 435 (654)
Q Consensus 369 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~v~~~G~~~~ 435 (654)
..++... ....... ....+...+...+.++.|. ....+++|++..|..++++|+||+
T Consensus 254 ~~~~~~~---------~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGs 323 (529)
T PRK15134 254 QKLLNSE---------PSGDPVP-LPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGS 323 (529)
T ss_pred HHHHHhC---------ccccccc-cCCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCC
Confidence 0010000 0000000 0011222344555555442 234589999999999999999999
Q ss_pred ChhhHHHHHHhc
Q psy1086 436 GKSTFLKAISRA 447 (654)
Q Consensus 436 GKstl~~~l~~~ 447 (654)
|||||++.+++.
T Consensus 324 GKSTLlk~l~Gl 335 (529)
T PRK15134 324 GKSTTGLALLRL 335 (529)
T ss_pred CHHHHHHHHhCc
Confidence 999999999985
No 270
>KOG1423|consensus
Probab=99.50 E-value=1.5e-14 Score=142.62 Aligned_cols=180 Identities=20% Similarity=0.265 Sum_probs=120.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecCcccccccc-----cccchHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-----NLGMGHQFLRH 251 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~-----~~~l~~~~l~~ 251 (654)
.|++||.||+|||||.|-+.|.+... +.-+-||+....|.+.-+. .++++.||||++...+. ...+....++.
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHHHhhhCHHHH
Confidence 68999999999999999999987754 4567788888899887665 68999999999864322 11223345667
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccc---
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLK--- 328 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~--- 328 (654)
++.+|+++.|+|++.. +.++ ..++......+...|.++|+||+|.......+-.+.+.+.+-.
T Consensus 153 ~q~AD~vvVv~Das~t--------r~~l------~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~ 218 (379)
T KOG1423|consen 153 AQNADCVVVVVDASAT--------RTPL------HPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK 218 (379)
T ss_pred HhhCCEEEEEEeccCC--------cCcc------ChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccch
Confidence 7888999999999731 1111 1112222234578999999999999877655544444332100
Q ss_pred ---ccccc---CCCccc---hhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 329 ---DHIHK---YPEEFQ---PEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 329 ---~~i~~---~~~~~~---~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+.... .+.... ...|..|+++|++||..+ +|++++.+++....+
T Consensus 219 ~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G-~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 219 LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG-EGIKDLKQYLMSQAP 271 (379)
T ss_pred hhhhHHHHhccCCcccccccccCcccceeEEEEecccc-cCHHHHHHHHHhcCC
Confidence 00000 010000 112455778999999999 999999999875443
No 271
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.50 E-value=4.2e-13 Score=121.34 Aligned_cols=141 Identities=19% Similarity=0.304 Sum_probs=90.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.||+++|+.++|||||+++|.+.... -..+..+.+.+ .++||||= +. .++.+..........||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~---------~~KTq~i~~~~----~~IDTPGE--yi-E~~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR---------YKKTQAIEYYD----NTIDTPGE--YI-ENPRFYHALIVTAQDAD 65 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC---------cCccceeEecc----cEEECChh--he-eCHHHHHHHHHHHhhCC
Confidence 48999999999999999999996441 12233355554 36999992 21 12234444445567999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|.|++.....+ +. .+. ..-++|+|=|+||+|+..+..-.+...+.+.. .
T Consensus 66 ~V~ll~dat~~~~~~------pP--------~fa----~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~---a------ 118 (143)
T PF10662_consen 66 VVLLLQDATEPRSVF------PP--------GFA----SMFNKPVIGVITKIDLPSDDANIERAKKWLKN---A------ 118 (143)
T ss_pred EEEEEecCCCCCccC------Cc--------hhh----cccCCCEEEEEECccCccchhhHHHHHHHHHH---c------
Confidence 999999999532111 11 010 12368999999999998332222222222221 1
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 617 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~ 617 (654)
....+|+|||.+|+ ||++|.+.|.
T Consensus 119 --------G~~~if~vS~~~~e-Gi~eL~~~L~ 142 (143)
T PF10662_consen 119 --------GVKEIFEVSAVTGE-GIEELKDYLE 142 (143)
T ss_pred --------CCCCeEEEECCCCc-CHHHHHHHHh
Confidence 11247999999999 9999999875
No 272
>PLN03073 ABC transporter F family; Provisional
Probab=99.50 E-value=6.9e-13 Score=152.58 Aligned_cols=49 Identities=14% Similarity=0.037 Sum_probs=41.9
Q ss_pred ccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHH
Q psy1086 275 KRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 275 ~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~ 323 (654)
.+.++.++|++++++..++..+...|.++++ |.+|.....++.+.+.++
T Consensus 338 ~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 390 (718)
T PLN03073 338 QVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW 390 (718)
T ss_pred HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 3567789999999999999999999999999 999998877766666543
No 273
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.50 E-value=8.2e-13 Score=131.29 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=97.2
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccC--------------CCcccccce------------------------eEEEE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIAS--------------YPFTTIKPN------------------------VGVIT 467 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~--------------~~~~t~~~~------------------------~~~v~ 467 (654)
||+++|+.++|||||++++....+.... ..+.|.... ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5889999999999999999864332110 112221100 01122
Q ss_pred eCCCceEEEEecCCCCCCCccccchhHHHHHHhh--cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccC
Q psy1086 468 FDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE--RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545 (654)
Q Consensus 468 ~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~--~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~ 545 (654)
..+ +.+.++||||.. .+...+...+. .+|++++|+|+.. ++.. ....+..++. ..
T Consensus 81 ~~~-~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~---g~~~-------~d~~~l~~l~-----~~ 137 (224)
T cd04165 81 KSS-KLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANA---GIIG-------MTKEHLGLAL-----AL 137 (224)
T ss_pred eCC-cEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCC---CCcH-------HHHHHHHHHH-----Hc
Confidence 223 479999999953 34445555554 6899999999973 2211 1122222222 24
Q ss_pred CCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCC---------------CccccccccceEEEeeecCCCChH
Q psy1086 546 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEF---------------QPEKVIKFQSILPISAKTNSTDVN 610 (654)
Q Consensus 546 ~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~vSAktg~~gv~ 610 (654)
++|+++|+||+|+.+...+..... ++.+.+..-+..- ....+....|+|++||.+|+ |++
T Consensus 138 ~ip~ivvvNK~D~~~~~~~~~~~~----~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~-Gi~ 212 (224)
T cd04165 138 NIPVFVVVTKIDLAPANILQETLK----DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE-GLD 212 (224)
T ss_pred CCCEEEEEECccccCHHHHHHHHH----HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc-CHH
Confidence 689999999999876543332222 2222221100000 00122455689999999999 999
Q ss_pred HHHHHHHH
Q psy1086 611 DAKLKIRS 618 (654)
Q Consensus 611 el~~~i~~ 618 (654)
+|.+.|..
T Consensus 213 ~L~~~L~~ 220 (224)
T cd04165 213 LLHAFLNL 220 (224)
T ss_pred HHHHHHHh
Confidence 99988754
No 274
>PRK12736 elongation factor Tu; Reviewed
Probab=99.50 E-value=5.8e-13 Score=143.83 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=95.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCC------C-----c-----cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARP------K-----I-----ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~------~-----~-----~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|++... + . .-..++|.+.....+..++ ..+.+|||||..
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~-~~i~~iDtPGh~----- 86 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEK-RHYAHVDCPGHA----- 86 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCC-cEEEEEECCCHH-----
Confidence 5799999999999999999986311 0 0 1156777776554444444 479999999943
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~ 567 (654)
.+...+...+..+|++++|+|++. ++.. ++.+.+. .+. ..++| +|||+||+|+.+..+..+.
T Consensus 87 --~f~~~~~~~~~~~d~~llVvd~~~---g~~~---~t~~~~~----~~~-----~~g~~~~IvviNK~D~~~~~~~~~~ 149 (394)
T PRK12736 87 --DYVKNMITGAAQMDGAILVVAATD---GPMP---QTREHIL----LAR-----QVGVPYLVVFLNKVDLVDDEELLEL 149 (394)
T ss_pred --HHHHHHHHHHhhCCEEEEEEECCC---CCch---hHHHHHH----HHH-----HcCCCEEEEEEEecCCcchHHHHHH
Confidence 455556677789999999999973 2222 2222221 111 13577 6788999999865544443
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCC
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS 606 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~ 606 (654)
+.+.+.+ .+...+ |. ....+++++||++|.
T Consensus 150 i~~~i~~---~l~~~~--~~----~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 150 VEMEVRE---LLSEYD--FP----GDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHHHH---HHHHhC--CC----cCCccEEEeeccccc
Confidence 3333332 222211 10 124689999999983
No 275
>PRK13409 putative ATPase RIL; Provisional
Probab=99.49 E-value=3.4e-13 Score=152.27 Aligned_cols=274 Identities=15% Similarity=0.140 Sum_probs=134.0
Q ss_pred EEEEeccCcC-CCCCCCCcccccceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEE--
Q psy1086 143 SIIIAHGGAG-GNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVIT-- 219 (654)
Q Consensus 143 ~~~~a~Gg~g-g~gn~~f~g~~Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~-- 219 (654)
.+...+|+.+ -+.+.+ ...+|+ .+||+|+||||||||+++|+|. +.|+.|.+.
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Ge------------v~gLvG~NGaGKSTLlkiL~G~-----------l~p~~G~i~~~ 133 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGK------------VTGILGPNGIGKTTAVKILSGE-----------LIPNLGDYEEE 133 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCC------------EEEEECCCCCCHHHHHHHHhCC-----------ccCCCccccCC
Confidence 3666777532 233344 455665 6999999999999999999995 445555553
Q ss_pred ---------eCCC-----------ccEEEEecCcccccccc-cccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccCh
Q psy1086 220 ---------FDDF-----------RKMSVADLPGLIEGAHR-NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSC 278 (654)
Q Consensus 220 ---------~~~~-----------~~~~i~D~PGl~~~~~~-~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~ 278 (654)
+++. ....+...|+....... -.+-..+.+...+....+..+++..+ +.+..+..
T Consensus 134 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~----l~~~~~~~ 209 (590)
T PRK13409 134 PSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLG----LENILDRD 209 (590)
T ss_pred CcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcC----CchhhcCC
Confidence 2210 00112222322111000 00011111111111111222222222 22344678
Q ss_pred HHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeec
Q psy1086 279 VETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISA 354 (654)
Q Consensus 279 ~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA 354 (654)
+..+|++++++..++..+...|.++++ +.+|.....+..+.+.+..+ ...+....+....-... ...++.+..
T Consensus 210 ~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~-~D~v~vl~~ 286 (590)
T PRK13409 210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYL-ADNVHIAYG 286 (590)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHh-CCEEEEEeC
Confidence 899999999999999999999999999 78998877776666655432 22221122221110000 012222211
Q ss_pred ccCccch----HHHHHHHHHHHHHhHh-HHHhhhhhhhhhh---HHHHhhCCCccccCCCcccCCC-cceeeeeeecccc
Q psy1086 355 KTNSTDV----NDAKLKIRSILDLLAE-EEQEMVDRELELD---SIIIAHGGAGGNAQNGWLGRKG-EELAVRLELKLIA 425 (654)
Q Consensus 355 ~~~~~~i----~~L~~~i~~~l~~~~~-~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 425 (654)
..+..++ ......+..++..... +..........+. ......+...+...+.++.+.. ...++++++..|.
T Consensus 287 ~~g~~g~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~l~~~s~~i~~Ge 366 (590)
T PRK13409 287 EPGAYGVVSKPKGVRVGINEYLKGYLPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEGE 366 (590)
T ss_pred CccccceecchhHHHHhHHHHHHhcchhhhhhccccCcceecCCCccccCCceEEEEcceEEEECCEEEEecceEECCCC
Confidence 0000000 0000111111111000 0000000000000 0000011222334444444432 2447889999999
Q ss_pred eEEEEcCCCCChhhHHHHHHhc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~ 447 (654)
.++++|+||+|||||++.+.+.
T Consensus 367 iv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 367 VIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 9999999999999999999986
No 276
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.49 E-value=5.8e-14 Score=131.60 Aligned_cols=153 Identities=25% Similarity=0.437 Sum_probs=104.2
Q ss_pred EEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccc--cccchHHHHHHHHHHHHH
Q psy1086 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR--NLGMGHQFLRHVERTKLI 258 (654)
Q Consensus 181 LVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~--~~~l~~~~l~~i~~~~~i 258 (654)
|+|.+|+|||||+++|++....+..+|++|..+..+.+.+++ ..+.++||||+...... ...+...++.+ ..++.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG-KEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC-eEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 589999999999999999877778899999999999888876 57999999998654321 11222333332 467888
Q ss_pred HHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCcc
Q psy1086 259 AMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEF 338 (654)
Q Consensus 259 l~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~ 338 (654)
++|+|.... .. .. ....++.. ..+|.++++||+|+................+
T Consensus 79 i~v~d~~~~--------~~---~~-~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----------- 130 (158)
T cd01879 79 VNVVDATNL--------ER---NL-YLTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELL----------- 130 (158)
T ss_pred EEEeeCCcc--------hh---HH-HHHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhh-----------
Confidence 889888631 11 11 11112211 4689999999999975433222221111110
Q ss_pred chhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 339 QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 339 ~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
+ .+++++||.++ .++.++++.+.+.
T Consensus 131 ------~-~~~~~iSa~~~-~~~~~l~~~l~~~ 155 (158)
T cd01879 131 ------G-VPVVPTSARKG-EGIDELKDAIAEL 155 (158)
T ss_pred ------C-CCeEEEEccCC-CCHHHHHHHHHHH
Confidence 1 25899999999 9999999888764
No 277
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.49 E-value=6.7e-13 Score=149.18 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=110.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc----------------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI----------------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~----------------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+.+|+...... ....++|.......+.|++ .++.+|||||+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~-~kinlIDTPGh~----- 75 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG-TKINIVDTPGHA----- 75 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC-EEEEEEECCCHH-----
Confidence 469999999999999999998642211 1134677777777888887 589999999953
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh--HHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA--QEIYD 566 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~--~~v~~ 566 (654)
.|...+.++++.+|++++|+|++.. . ......|...+. ..+.|.|||+||+|+.+. ..+.+
T Consensus 76 --DF~~ev~~~l~~aD~alLVVDa~~G---~-------~~qT~~~l~~a~-----~~~ip~IVviNKiD~~~a~~~~v~~ 138 (594)
T TIGR01394 76 --DFGGEVERVLGMVDGVLLLVDASEG---P-------MPQTRFVLKKAL-----ELGLKPIVVINKIDRPSARPDEVVD 138 (594)
T ss_pred --HHHHHHHHHHHhCCEEEEEEeCCCC---C-------cHHHHHHHHHHH-----HCCCCEEEEEECCCCCCcCHHHHHH
Confidence 4666777899999999999999732 1 122223333322 246899999999998754 23444
Q ss_pred HHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCC---------CChHHHHHHHHHHH
Q psy1086 567 GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS---------TDVNDAKLKIRSIL 620 (654)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~---------~gv~el~~~i~~~~ 620 (654)
++.+.+..+... .....+|++++||++|. .|+..||+.|.+.+
T Consensus 139 ei~~l~~~~g~~-----------~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 139 EVFDLFAELGAD-----------DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred HHHHHHHhhccc-----------cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 444333321100 00112479999999994 26889988887665
No 278
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.49 E-value=9.4e-14 Score=123.99 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=77.4
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCc--cCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKI--ASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~--~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
||+++|..|+|||||+++|++..... ...+..+.........+... ..+.+||++|......... ..+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------~~~~~ 73 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ-------FFLKK 73 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH-------HHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc-------chhhc
Confidence 68999999999999999999987651 11111111122222333321 2578999999744322221 33789
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMD 557 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~D 557 (654)
+|++++|||++ +..+++.+..+..++........+.|+|||+||.|
T Consensus 74 ~d~~ilv~D~s---------~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 74 ADAVILVYDLS---------DPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SCEEEEEEECC---------GHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred CcEEEEEEcCC---------ChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999 77788888777777765543345699999999998
No 279
>KOG0075|consensus
Probab=99.48 E-value=1.9e-13 Score=120.15 Aligned_cols=158 Identities=22% Similarity=0.290 Sum_probs=110.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
..+.++|--++||||++|.+....+...- ..|+.+....++-.. ..+.+||.|| ++.++.+|.+|+|.++
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edm--iptvGfnmrk~tkgn-vtiklwD~gG-------q~rfrsmWerycR~v~ 90 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDM--IPTVGFNMRKVTKGN-VTIKLWDLGG-------QPRFRSMWERYCRGVS 90 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhh--cccccceeEEeccCc-eEEEEEecCC-------CccHHHHHHHHhhcCc
Confidence 36788999999999999988775553332 335666666666554 4899999999 5668889999999999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHh--hcccCCCCEEEEEeCCCccChH---HHHHHHHHHHHhhHhhh
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY--KMNLLEKPIILLVNKMDVEGAQ---EIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~--~~~~~~~p~iiv~NK~Dl~~~~---~v~~~~~~~~~~~~~~~ 579 (654)
++++++|++++ +. +....+|++.. .+...++|+++++||.|++++- ++.+++. +..+.+
T Consensus 91 aivY~VDaad~-------~k-----~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmg--L~sitd-- 154 (186)
T KOG0075|consen 91 AIVYVVDAADP-------DK-----LEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMG--LSSITD-- 154 (186)
T ss_pred EEEEEeecCCc-------cc-----chhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhC--cccccc--
Confidence 99999999842 11 11222333322 3455689999999999998752 2222222 222222
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+-+..|.+|+|... |++-+.+.+.+..+.
T Consensus 155 -------------REvcC~siScke~~-Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 155 -------------REVCCFSISCKEKV-NIDITLDWLIEHSKS 183 (186)
T ss_pred -------------ceEEEEEEEEcCCc-cHHHHHHHHHHHhhh
Confidence 22457999999998 999999998876543
No 280
>PRK10218 GTP-binding protein; Provisional
Probab=99.48 E-value=8.7e-13 Score=148.05 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=104.9
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc----------------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI----------------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~----------------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~ 486 (654)
...+|+++|+.++|||||+++|+...... ....++|.......+.+++ .++.+|||||+.+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~-~~inliDTPG~~d-- 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND-YRINIVDTPGHAD-- 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC-EEEEEEECCCcch--
Confidence 34689999999999999999999732111 1134566666666777776 5899999999544
Q ss_pred ccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH--HH
Q psy1086 487 HRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EI 564 (654)
Q Consensus 487 ~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~--~v 564 (654)
+...+..+++.+|++++|+|++.. .. .++ ..+...+. ..+.|.|+|+||+|+.+.+ .+
T Consensus 81 -----f~~~v~~~l~~aDg~ILVVDa~~G---~~------~qt-~~~l~~a~-----~~gip~IVviNKiD~~~a~~~~v 140 (607)
T PRK10218 81 -----FGGEVERVMSMVDSVLLVVDAFDG---PM------PQT-RFVTKKAF-----AYGLKPIVVINKVDRPGARPDWV 140 (607)
T ss_pred -----hHHHHHHHHHhCCEEEEEEecccC---cc------HHH-HHHHHHHH-----HcCCCEEEEEECcCCCCCchhHH
Confidence 555677899999999999999832 11 111 12212211 2468999999999987542 23
Q ss_pred HHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCC---------ChHHHHHHHHHH
Q psy1086 565 YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNST---------DVNDAKLKIRSI 619 (654)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~---------gv~el~~~i~~~ 619 (654)
.+++.+.+..+ ... ......|++++||++|.. ++..|++.|.+.
T Consensus 141 l~ei~~l~~~l----~~~-------~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 141 VDQVFDLFVNL----DAT-------DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred HHHHHHHHhcc----Ccc-------ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 33333332211 000 011235899999999972 256666655543
No 281
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.48 E-value=1.1e-12 Score=137.13 Aligned_cols=89 Identities=40% Similarity=0.761 Sum_probs=80.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc----------------eEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~----------------~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|.+|+|||||+|++++....+.++|++|+++..+.+.+.+.+ ++.++||||+.+..+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 589999999999999999999988777889999999999998887632 4899999999988777
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCC
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVN 513 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~ 513 (654)
..+++..++..++.||++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 7788899999999999999999986
No 282
>KOG3883|consensus
Probab=99.48 E-value=1.1e-12 Score=116.13 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=126.1
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcccccceeEEEEeCCCc--eEEEEecCCCCCCCccccchhHHHHH
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNVGVITFDDFR--KMSVADLPGLIEGAHRNLGMGHQFLR 498 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~t~~~~~~~v~~~~~~--~~~i~DTpG~~~~~~~~~~~~~~~~~ 498 (654)
-+.-||+++|.-++|||+++..++..+.... ...+|..+.....+..+.+- .+.+.||+|+..+.. ++ -..
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~---eL---prh 80 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ---EL---PRH 80 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh---hh---hHh
Confidence 3456899999999999999999887655443 34445556666666665432 789999999866511 11 125
Q ss_pred HhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhh
Q psy1086 499 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 499 ~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 578 (654)
|+..+|++++||+.. +.+||+.+..+..|+.... +...+|+++++||+|+.+.+++..+.++.|+.-.+
T Consensus 81 y~q~aDafVLVYs~~---------d~eSf~rv~llKk~Idk~K-dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk- 149 (198)
T KOG3883|consen 81 YFQFADAFVLVYSPM---------DPESFQRVELLKKEIDKHK-DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREK- 149 (198)
T ss_pred HhccCceEEEEecCC---------CHHHHHHHHHHHHHHhhcc-ccccccEEEEechhhcccchhcCHHHHHHHHhhhh-
Confidence 778999999999998 8899999999999987643 44578999999999998777776667776665221
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+..++++|+.-. -+-|-|..++..+-.
T Consensus 150 ----------------vkl~eVta~dR~-sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 150 ----------------VKLWEVTAMDRP-SLYEPFTYLASRLHQ 176 (198)
T ss_pred ----------------eeEEEEEeccch-hhhhHHHHHHHhccC
Confidence 247899999987 899999998876643
No 283
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.48 E-value=1.5e-12 Score=128.99 Aligned_cols=158 Identities=19% Similarity=0.261 Sum_probs=96.4
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc-------------------CCCcccccceeEEEEeCC----CceEEEEecCCC
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA-------------------SYPFTTIKPNVGVITFDD----FRKMSVADLPGL 482 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~-------------------~~~~~t~~~~~~~v~~~~----~~~~~i~DTpG~ 482 (654)
+|+++|+.++|||||+++|+....... ...+++.......+.+.+ ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987543321 012334433333443332 237899999996
Q ss_pred CCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccC--
Q psy1086 483 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG-- 560 (654)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~-- 560 (654)
.+ +...+..+++.+|++++|+|++.. .+.+. ..+..... ..+.|+++|+||+|+..
T Consensus 82 ~~-------f~~~~~~~~~~aD~~llVvD~~~~---------~~~~~-~~~~~~~~-----~~~~p~iiviNK~D~~~~~ 139 (213)
T cd04167 82 VN-------FMDEVAAALRLSDGVVLVVDVVEG---------VTSNT-ERLIRHAI-----LEGLPIVLVINKIDRLILE 139 (213)
T ss_pred cc-------hHHHHHHHHHhCCEEEEEEECCCC---------CCHHH-HHHHHHHH-----HcCCCEEEEEECcccCccc
Confidence 54 445566889999999999999832 22222 12222221 13589999999999751
Q ss_pred ----hHHHHHHHHHHHHhhHhhhccCCC----CCCccccccccceEEEeeecCCCChH
Q psy1086 561 ----AQEIYDGIRDTLHNLKDHIHKYPE----EFQPEKVIKFQSILPISAKTNSTDVN 610 (654)
Q Consensus 561 ----~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~vSAktg~~gv~ 610 (654)
..+....+.+...+++..+..+.. .|.|. .-++++.||+.++ ++.
T Consensus 140 ~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~----~~nv~~~s~~~~w-~~~ 192 (213)
T cd04167 140 LKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPE----NGNVCFASSKFGF-CFT 192 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccC----CCeEEEEecCCCe-EEe
Confidence 223334444444455444433321 01111 1248889999988 664
No 284
>CHL00071 tufA elongation factor Tu
Probab=99.47 E-value=6.4e-13 Score=144.23 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc----------------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI----------------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~----------------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|++....+ .-.+++|.+.....+.+++ .++.++||||+
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~-~~~~~iDtPGh------ 85 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN-RHYAHVDCPGH------ 85 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC-eEEEEEECCCh------
Confidence 579999999999999999999752211 1146777777665655555 47899999994
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~ 567 (654)
..+...+...+..+|++++|+|+.. ++..++ .+.+ ..+ ...++| +|+|+||||+.+..+..+.
T Consensus 86 -~~~~~~~~~~~~~~D~~ilVvda~~---g~~~qt---~~~~----~~~-----~~~g~~~iIvvvNK~D~~~~~~~~~~ 149 (409)
T CHL00071 86 -ADYVKNMITGAAQMDGAILVVSAAD---GPMPQT---KEHI----LLA-----KQVGVPNIVVFLNKEDQVDDEELLEL 149 (409)
T ss_pred -HHHHHHHHHHHHhCCEEEEEEECCC---CCcHHH---HHHH----HHH-----HHcCCCEEEEEEEccCCCCHHHHHHH
Confidence 3455666778889999999999973 222221 1111 111 123578 6788999999876555444
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCCh
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDV 609 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv 609 (654)
+.+.+.. .+..++ |. ...++++++||++|. |+
T Consensus 150 ~~~~l~~---~l~~~~--~~----~~~~~ii~~Sa~~g~-n~ 181 (409)
T CHL00071 150 VELEVRE---LLSKYD--FP----GDDIPIVSGSALLAL-EA 181 (409)
T ss_pred HHHHHHH---HHHHhC--CC----CCcceEEEcchhhcc-cc
Confidence 4433333 332211 10 124689999999997 54
No 285
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.47 E-value=2.4e-12 Score=126.32 Aligned_cols=173 Identities=20% Similarity=0.302 Sum_probs=102.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC---CCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD---DFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~---~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+|+++|++++|||||+++|....+.. ..+.+ .+....+... ....+.+|||||+. .++..+..+++.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~-t~~s~--~~~~~~~~~~~~~~~~~~~l~D~pG~~-------~~~~~~~~~~~~ 71 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS-TVTSI--EPNVATFILNSEGKGKKFRLVDVPGHP-------KLRDKLLETLKN 71 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-ccCcE--eecceEEEeecCCCCceEEEEECCCCH-------HHHHHHHHHHhc
Confidence 68999999999999999999875422 22222 2233333332 12479999999954 456677788999
Q ss_pred c-cEEEEEEeCCCcccCCCCCccchHHHHHHHH-HHHHHhhcccCCCCEEEEEeCCCccCh---HHHHHHHHHHHHhhHh
Q psy1086 503 T-KLIAMIVDVNGFQLGLKHPKRSCVETVLLLN-KELELYKMNLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKD 577 (654)
Q Consensus 503 a-~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~-~~l~~~~~~~~~~p~iiv~NK~Dl~~~---~~v~~~~~~~~~~~~~ 577 (654)
+ +++++|+|+++. ...+.....+. ..+........++|++||+||+|+..+ ..+.+.+.+.+..++.
T Consensus 72 ~~~~vV~VvD~~~~--------~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~ 143 (203)
T cd04105 72 SAKGIVFVVDSATF--------QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRE 143 (203)
T ss_pred cCCEEEEEEECccc--------hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHH
Confidence 8 999999999832 02233332222 222211111247999999999998654 2344444444443322
Q ss_pred hhcc----C----------------CCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 578 HIHK----Y----------------PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 578 ~~~~----~----------------~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.... . ...|. -....+.+++.|++.+..+++.+.+.|.+
T Consensus 144 ~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~--~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 144 SRSKSLSSLDGDEGSKESLGDKGGKSFEFD--QLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HHhccccccccccccccccccccCcceeec--cCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 2111 0 00110 01234567889998765348887777654
No 286
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.47 E-value=9.6e-14 Score=152.01 Aligned_cols=155 Identities=25% Similarity=0.445 Sum_probs=113.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccc--ccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG--AHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~--~~~~~~l~~~~l~~i~~~ 255 (654)
+|+|+|.||+|||||+|+|+|.+.++++||++|.+...|.+.+.++ ++.++|+||...- .+.++...++|+. -++.
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~-~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~~ 82 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH-EIEIVDLPGTYSLTAYSEDEKVARDFLL-EGKP 82 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc-eEEEEeCCCcCCCCCCCchHHHHHHHHh-cCCC
Confidence 5999999999999999999999999999999999999999999885 7999999998753 2333334444433 2445
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l~~~i~ 332 (654)
|+++.|+|++... ..+..- -|+.. ...|+++++|++|....... .+.+.+.+.
T Consensus 83 D~ivnVvDAtnLe-----------RnLylt-lQLlE-----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG------- 138 (653)
T COG0370 83 DLIVNVVDATNLE-----------RNLYLT-LQLLE-----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG------- 138 (653)
T ss_pred CEEEEEcccchHH-----------HHHHHH-HHHHH-----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-------
Confidence 8888888887321 111111 11111 68899999999998765322 223333222
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+++++||+++ .|++++++++.+..+
T Consensus 139 --------------vPVv~tvA~~g-~G~~~l~~~i~~~~~ 164 (653)
T COG0370 139 --------------VPVVPTVAKRG-EGLEELKRAIIELAE 164 (653)
T ss_pred --------------CCEEEEEeecC-CCHHHHHHHHHHhcc
Confidence 37999999999 999999998875443
No 287
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.47 E-value=7e-13 Score=143.76 Aligned_cols=163 Identities=21% Similarity=0.318 Sum_probs=99.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc---cCCCcccccceeEEE--------------Ee----C-------CCceEEE
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI---ASYPFTTIKPNVGVI--------------TF----D-------DFRKMSV 476 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~---~~~~~~t~~~~~~~v--------------~~----~-------~~~~~~i 476 (654)
.+|+++|+.++|||||++.|.+..... .-..++|.+.....+ +. + ....+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 479999999999999999997642211 112223322211100 00 0 1247999
Q ss_pred EecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Q psy1086 477 ADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKM 556 (654)
Q Consensus 477 ~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~ 556 (654)
|||||+ +.+...+...+..+|++++|+|++.. + +..++.+.+..+ .. ....|+|+|+||+
T Consensus 85 iDtPGh-------~~f~~~~~~g~~~aD~aIlVVDa~~g---~--~~~qt~e~l~~l----~~----~gi~~iIVvvNK~ 144 (406)
T TIGR03680 85 VDAPGH-------ETLMATMLSGAALMDGALLVIAANEP---C--PQPQTKEHLMAL----EI----IGIKNIVIVQNKI 144 (406)
T ss_pred EECCCH-------HHHHHHHHHHHHHCCEEEEEEECCCC---c--cccchHHHHHHH----HH----cCCCeEEEEEEcc
Confidence 999994 44666677888899999999999832 1 012223333211 11 1135789999999
Q ss_pred CccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 557 DVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 557 Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
|+.+.....+.. .++.+.+... .....++|++||++|. |+++|++.+...+
T Consensus 145 Dl~~~~~~~~~~----~~i~~~l~~~--------~~~~~~ii~vSA~~g~-gi~~L~e~L~~~l 195 (406)
T TIGR03680 145 DLVSKEKALENY----EEIKEFVKGT--------VAENAPIIPVSALHNA-NIDALLEAIEKFI 195 (406)
T ss_pred ccCCHHHHHHHH----HHHHhhhhhc--------ccCCCeEEEEECCCCC-ChHHHHHHHHHhC
Confidence 998653322211 1222222110 0123579999999999 9999999998754
No 288
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=9.5e-14 Score=129.82 Aligned_cols=154 Identities=25% Similarity=0.325 Sum_probs=104.5
Q ss_pred EEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCccccccc-ccccchHHHHHHHHHHHH
Q psy1086 180 GLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 180 gLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~-~~~~l~~~~l~~i~~~~~ 257 (654)
+|+|.+|+|||||++.|++... .+..++.+|.......+.+.+ ..+.++||||+.+... ....+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-REFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999998753 456788889888888887766 4799999999865433 112233344556777888
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCc
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 337 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~ 337 (654)
+++|+|.... ... .. .++..+... ...|.++++||+|+....... ..+..+
T Consensus 80 ii~v~d~~~~-------~~~--~~-----~~~~~~~~~-~~~piiiv~nK~D~~~~~~~~----~~~~~~---------- 130 (157)
T cd01894 80 ILFVVDGREG-------LTP--AD-----EEIAKYLRK-SKKPVILVVNKVDNIKEEDEA----AEFYSL---------- 130 (157)
T ss_pred EEEEEecccc-------CCc--cH-----HHHHHHHHh-cCCCEEEEEECcccCChHHHH----HHHHhc----------
Confidence 8999887531 000 11 111111111 358999999999997654331 111110
Q ss_pred cchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 338 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 338 ~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
+..+++++|++++ .+++++++.+.+.
T Consensus 131 -------~~~~~~~~Sa~~~-~gv~~l~~~l~~~ 156 (157)
T cd01894 131 -------GFGEPIPISAEHG-RGIGDLLDAILEL 156 (157)
T ss_pred -------CCCCeEEEecccC-CCHHHHHHHHHhh
Confidence 1125789999999 9999999988754
No 289
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.47 E-value=5.8e-13 Score=118.48 Aligned_cols=113 Identities=31% Similarity=0.562 Sum_probs=84.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc--chhHHHHHHhhc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL--GMGHQFLRHVER 502 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~--~~~~~~~~~~~~ 502 (654)
+|+++|.+|+|||||+|.|++... ..+..+++|..+....+.+++ ..+.++||||+.+...... .....+.+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN-KKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT-EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece-eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 689999999999999999998644 446678899988777778877 4789999999977654332 134457778899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNK 555 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK 555 (654)
+|++++|+|++. ..-+....+.+++. .++|+++|+||
T Consensus 80 ~d~ii~vv~~~~----------~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASN----------PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTS----------HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred CCEEEEEEECCC----------CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 999999999762 11123334444442 46899999998
No 290
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.47 E-value=8.8e-13 Score=145.14 Aligned_cols=157 Identities=21% Similarity=0.258 Sum_probs=100.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccC---------------------------------CCcccccceeEEEEeCCC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIAS---------------------------------YPFTTIKPNVGVITFDDF 471 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~---------------------------------~~~~t~~~~~~~v~~~~~ 471 (654)
.+|+++|+.++|||||+.+|+.....+.. ..++|.+.....+.+++
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~- 106 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK- 106 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC-
Confidence 58999999999999999999865432211 23455666656666665
Q ss_pred ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEE
Q psy1086 472 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 551 (654)
Q Consensus 472 ~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~ii 551 (654)
.++.+|||||+. .+...+...++.+|++++|+|++. ++.+++++... +...+ ...|+||
T Consensus 107 ~~i~~iDTPGh~-------~f~~~~~~~l~~aD~allVVDa~~---G~~~qt~~~~~----l~~~l-------g~~~iIv 165 (474)
T PRK05124 107 RKFIIADTPGHE-------QYTRNMATGASTCDLAILLIDARK---GVLDQTRRHSF----IATLL-------GIKHLVV 165 (474)
T ss_pred cEEEEEECCCcH-------HHHHHHHHHHhhCCEEEEEEECCC---CccccchHHHH----HHHHh-------CCCceEE
Confidence 489999999943 354455566799999999999983 44444332111 11111 1257899
Q ss_pred EEeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHH
Q psy1086 552 LVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 614 (654)
Q Consensus 552 v~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~ 614 (654)
|+||+|+.+. .....++.+.+..+ +...+ +..+.+++|+||++|. ||+++-.
T Consensus 166 vvNKiD~~~~~~~~~~~i~~~l~~~---~~~~~-------~~~~~~iipvSA~~g~-ni~~~~~ 218 (474)
T PRK05124 166 AVNKMDLVDYSEEVFERIREDYLTF---AEQLP-------GNLDIRFVPLSALEGD-NVVSQSE 218 (474)
T ss_pred EEEeeccccchhHHHHHHHHHHHHH---HHhcC-------CCCCceEEEEEeecCC-Ccccccc
Confidence 9999999743 22333333333222 21111 0124679999999999 9987643
No 291
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.46 E-value=6.6e-13 Score=143.88 Aligned_cols=163 Identities=20% Similarity=0.298 Sum_probs=99.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc---cCCCcccccceeEEEEe------------------C--C-----CceEEE
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI---ASYPFTTIKPNVGVITF------------------D--D-----FRKMSV 476 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~---~~~~~~t~~~~~~~v~~------------------~--~-----~~~~~i 476 (654)
.+|+++|+.++|||||+.+|.+..... .-..++|.+.......+ + + ...+.+
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 579999999999999999996631111 11334444432211111 1 1 147899
Q ss_pred EecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Q psy1086 477 ADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKM 556 (654)
Q Consensus 477 ~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~ 556 (654)
|||||. +.+...+......+|++++|+|++.. +. ..++.+.+..+ .. ....|+++|+||+
T Consensus 90 iDtPG~-------~~f~~~~~~~~~~~D~~llVVDa~~~---~~--~~~t~~~l~~l----~~----~~i~~iiVVlNK~ 149 (411)
T PRK04000 90 VDAPGH-------ETLMATMLSGAALMDGAILVIAANEP---CP--QPQTKEHLMAL----DI----IGIKNIVIVQNKI 149 (411)
T ss_pred EECCCH-------HHHHHHHHHHHhhCCEEEEEEECCCC---CC--ChhHHHHHHHH----HH----cCCCcEEEEEEee
Confidence 999994 44555666777788999999999832 10 12222222211 11 1124789999999
Q ss_pred CccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 557 DVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 557 Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
|+.+....... ++++++.+... .....++|++||++|. |+++|++.|.+.+
T Consensus 150 Dl~~~~~~~~~----~~~i~~~l~~~--------~~~~~~ii~vSA~~g~-gI~~L~~~L~~~l 200 (411)
T PRK04000 150 DLVSKERALEN----YEQIKEFVKGT--------VAENAPIIPVSALHKV-NIDALIEAIEEEI 200 (411)
T ss_pred ccccchhHHHH----HHHHHHHhccc--------cCCCCeEEEEECCCCc-CHHHHHHHHHHhC
Confidence 99764332211 12222222110 0224579999999999 9999999998765
No 292
>KOG4423|consensus
Probab=99.46 E-value=4.7e-15 Score=135.49 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=128.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc--eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR--KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~--~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.++.++|..++|||+++.+++...+......++..++....+.|++.. ++++||.+|+++ ++.++.-|++.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQer-------fg~mtrVyyke 98 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQER-------FGNMTRVYYKE 98 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhh-------hcceEEEEecC
Confidence 578899999999999999999988877777888888888888888743 678999999664 55555678999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhh--cccCCCCEEEEEeCCCccChHHHH--HHHHHHHHhhHhh
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIY--DGIRDTLHNLKDH 578 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~~~~p~iiv~NK~Dl~~~~~v~--~~~~~~~~~~~~~ 578 (654)
|+++++|||++ +...|+-+..|.+++.... +.....|+|+++||||+.+..... ..+.+..++
T Consensus 99 a~~~~iVfdvt---------~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ke---- 165 (229)
T KOG4423|consen 99 AHGAFIVFDVT---------RSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKE---- 165 (229)
T ss_pred CcceEEEEEcc---------ccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhc----
Confidence 99999999999 4556888888988876442 334567999999999987543221 222222111
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
..|...++||||.+. |++|+.+.+++++--.+
T Consensus 166 -------------ngf~gwtets~Kenk-ni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 166 -------------NGFEGWTETSAKENK-NIPEAQRELVEKILVND 197 (229)
T ss_pred -------------cCccceeeecccccc-ChhHHHHHHHHHHHhhc
Confidence 345568999999999 99999999988775443
No 293
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.46 E-value=9.4e-13 Score=142.68 Aligned_cols=154 Identities=22% Similarity=0.297 Sum_probs=99.4
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc---------------------------------CCCcccccceeEEEEeCCCc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA---------------------------------SYPFTTIKPNVGVITFDDFR 472 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~---------------------------------~~~~~t~~~~~~~v~~~~~~ 472 (654)
+|+++|+.++|||||+.+|+.....+. -..++|.+.....+.+++ .
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-R 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-e
Confidence 789999999999999999975432111 134566777777777766 4
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
++.+|||||+ +.+...+...+..+|++++|+|++. ++..++++. +. +... ....++|+|
T Consensus 81 ~~~liDtPGh-------~~f~~~~~~~~~~aD~allVVda~~---G~~~qt~~~---~~-~~~~-------~~~~~iivv 139 (406)
T TIGR02034 81 KFIVADTPGH-------EQYTRNMATGASTADLAVLLVDARK---GVLEQTRRH---SY-IASL-------LGIRHVVLA 139 (406)
T ss_pred EEEEEeCCCH-------HHHHHHHHHHHhhCCEEEEEEECCC---CCccccHHH---HH-HHHH-------cCCCcEEEE
Confidence 8999999994 3355555677889999999999983 343333221 11 1111 113468899
Q ss_pred EeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHH
Q psy1086 553 VNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 613 (654)
Q Consensus 553 ~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~ 613 (654)
+||+|+.+. ....+++.+.+..+ +...+ ....+++++||++|. |++++-
T Consensus 140 iNK~D~~~~~~~~~~~i~~~~~~~---~~~~~--------~~~~~iipiSA~~g~-ni~~~~ 189 (406)
T TIGR02034 140 VNKMDLVDYDEEVFENIKKDYLAF---AEQLG--------FRDVTFIPLSALKGD-NVVSRS 189 (406)
T ss_pred EEecccccchHHHHHHHHHHHHHH---HHHcC--------CCCccEEEeecccCC-CCcccc
Confidence 999999753 22333333333322 21111 123579999999999 998753
No 294
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.46 E-value=2.6e-12 Score=127.19 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=99.8
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc----------------CCCcccccceeEEEEeCC---------CceEEEEecC
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA----------------SYPFTTIKPNVGVITFDD---------FRKMSVADLP 480 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~----------------~~~~~t~~~~~~~v~~~~---------~~~~~i~DTp 480 (654)
+|+++|+.++|||||+.+|+.....+. ...++|.......+.+.. ...+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999986532211 123445544444444441 2378999999
Q ss_pred CCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc-
Q psy1086 481 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE- 559 (654)
Q Consensus 481 G~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~- 559 (654)
|+.+ +...+..+++.||++++|+|++.. .+.++...+.. . ...+.|+|+|+||+|+.
T Consensus 82 G~~~-------f~~~~~~~l~~aD~~ilVvD~~~g---------~~~~t~~~l~~-~-----~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 82 GHVD-------FSSEVTAALRLCDGALVVVDAVEG---------VCVQTETVLRQ-A-----LKERVKPVLVINKIDRLI 139 (222)
T ss_pred Cccc-------cHHHHHHHHHhcCeeEEEEECCCC---------CCHHHHHHHHH-H-----HHcCCCEEEEEECCCcch
Confidence 9654 555677899999999999999832 12222211211 1 11358999999999986
Q ss_pred -----ChHHHHHHHHHHHHhhHhhhccCCCC-CC--ccccccccc----eEEEeeecCCCCh
Q psy1086 560 -----GAQEIYDGIRDTLHNLKDHIHKYPEE-FQ--PEKVIKFQS----ILPISAKTNSTDV 609 (654)
Q Consensus 560 -----~~~~v~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~----~~~vSAktg~~gv 609 (654)
...+.+..+.+...++...+.++... +. .+....+.| +.+-||+.|+ ..
T Consensus 140 ~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw-~f 200 (222)
T cd01885 140 LELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGW-GF 200 (222)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCE-Ee
Confidence 33445555555555555554443211 10 001123334 8899999988 54
No 295
>KOG1487|consensus
Probab=99.46 E-value=1.6e-14 Score=138.81 Aligned_cols=117 Identities=35% Similarity=0.592 Sum_probs=96.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
++++++|+|.+|||||+.-++|....++.|.|||+....|.+.+.+. .+.+.|+||+++++..+++.+++.......|.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga-Kiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA-KIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc-ceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 38999999999999999999999999999999999999999999874 79999999999999999999999888888888
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
+++.|+|+. .|+..-..++.|++-|.-.|...|--+..
T Consensus 139 li~~vld~~-----------kp~~hk~~ie~eleg~girlnk~pp~i~~ 176 (358)
T KOG1487|consen 139 LIFIVLDVL-----------KPLSHKKIIEKELEGFGIRLNKQPPNIGT 176 (358)
T ss_pred EEEEEeecc-----------CcccHHHHHHHhhhcceeeccCCCCCccc
Confidence 888888875 34444455666666666555554443333
No 296
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.45 E-value=1.6e-12 Score=140.72 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=100.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhc------CCC----c------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRA------RPK----I------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~------~~~----~------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|++. ... . .-..++|.+.....+..++ .++.+|||||+.+
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~-~~~~liDtpGh~~---- 87 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETEN-RHYAHVDCPGHAD---- 87 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCC-EEEEEEECCchHH----
Confidence 57999999999999999999742 111 0 1146788777655554443 4799999999643
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEE-EEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII-LLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~i-iv~NK~Dl~~~~~v~~~ 567 (654)
+...+...+..+|++++|+|++.. + ..++.+.+. .+. ..++|.+ +|+||||+.+..+..+.
T Consensus 88 ---f~~~~~~~~~~~D~~ilVvda~~g---~---~~qt~e~l~----~~~-----~~gi~~iIvvvNK~Dl~~~~~~~~~ 149 (394)
T TIGR00485 88 ---YVKNMITGAAQMDGAILVVSATDG---P---MPQTREHIL----LAR-----QVGVPYIVVFLNKCDMVDDEELLEL 149 (394)
T ss_pred ---HHHHHHHHHhhCCEEEEEEECCCC---C---cHHHHHHHH----HHH-----HcCCCEEEEEEEecccCCHHHHHHH
Confidence 445556677889999999999832 1 122222221 111 1356765 68999999865544433
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+.+.+.+ .+.... + ....++++++||++|..+..++.+.+..+++.
T Consensus 150 ~~~~i~~---~l~~~~--~----~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~ 195 (394)
T TIGR00485 150 VEMEVRE---LLSEYD--F----PGDDTPIIRGSALKALEGDAEWEAKILELMDA 195 (394)
T ss_pred HHHHHHH---HHHhcC--C----CccCccEEECccccccccCCchhHhHHHHHHH
Confidence 3323322 222211 0 01236899999999863554444444444443
No 297
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.45 E-value=1.6e-13 Score=129.16 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcc
Q psy1086 248 FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 327 (654)
Q Consensus 248 ~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l 327 (654)
.++.++.+|++++|+|+.... .. ....+.+.+.. ....+|.++|+||+|+...+.. ..+.+.+...
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~------~~----~~~~i~~~l~~---~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~ 67 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM------GT----RCKHVEEYLKK---EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKE 67 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc------cc----cCHHHHHHHHh---ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcC
Confidence 456788899999999987321 00 01111222211 1124899999999999755432 2222222210
Q ss_pred ccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCc
Q psy1086 328 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGW 407 (654)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 407 (654)
..+ .++++||+++ .+++++++.+.+++.... .
T Consensus 68 ----------------~~~-~~~~iSa~~~-~~~~~L~~~l~~~~~~~~--------------------~---------- 99 (157)
T cd01858 68 ----------------YPT-IAFHASINNP-FGKGSLIQLLRQFSKLHS--------------------D---------- 99 (157)
T ss_pred ----------------CcE-EEEEeecccc-ccHHHHHHHHHHHHhhhc--------------------c----------
Confidence 011 3688999999 999999998876543100 0
Q ss_pred ccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCC
Q psy1086 408 LGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482 (654)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~ 482 (654)
....+|+++|.+|+|||||+|++.+... ..+..+++|+.... +..+. .+.++||||+
T Consensus 100 --------------~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~~~--~~~liDtPGi 157 (157)
T cd01858 100 --------------KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITLMK--RIYLIDCPGV 157 (157)
T ss_pred --------------ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEcCC--CEEEEECcCC
Confidence 0113688999999999999999998765 34567888876543 33333 5899999995
No 298
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.45 E-value=4.2e-13 Score=137.73 Aligned_cols=185 Identities=23% Similarity=0.249 Sum_probs=107.8
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccC------------------CCcccccceeEEEEeCCCceEEEEecCCCCCCCc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIAS------------------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~------------------~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~ 487 (654)
+|+++|++|+|||||+++++........ ..+.+.......+.+++ .++.+|||||..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~-~~i~liDtPG~~---- 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG-HKINLIDTPGYA---- 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC-EEEEEEECcCHH----
Confidence 4789999999999999999764321110 12344455556677776 489999999953
Q ss_pred cccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHH
Q psy1086 488 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 488 ~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~ 567 (654)
.+...+..+++.||++++|+|++.. ........|. .+. ..+.|.++|+||+|+.... .
T Consensus 76 ---~f~~~~~~~l~~aD~~i~Vvd~~~g---------~~~~~~~~~~-~~~-----~~~~p~iivvNK~D~~~~~-~--- 133 (268)
T cd04170 76 ---DFVGETRAALRAADAALVVVSAQSG---------VEVGTEKLWE-FAD-----EAGIPRIIFINKMDRERAD-F--- 133 (268)
T ss_pred ---HHHHHHHHHHHHCCEEEEEEeCCCC---------CCHHHHHHHH-HHH-----HcCCCEEEEEECCccCCCC-H---
Confidence 3455677889999999999999842 1222222222 221 2468999999999987542 1
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH---HHHH-HHhhHhHHHHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL---DLLA-EEEQEMVDRELELVKKLKS 643 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~---~~~~-~~~~~~~~~~~~~~~~~~~ 643 (654)
.+.++++++.+.. .+ -.+.+++++|. ++..+.+.+.... +... ....+.+....+.++.+|+
T Consensus 134 -~~~~~~l~~~~~~---~~---------~~~~ip~~~~~-~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 199 (268)
T cd04170 134 -DKTLAALQEAFGR---PV---------VPLQLPIGEGD-DFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEARE 199 (268)
T ss_pred -HHHHHHHHHHhCC---Ce---------EEEEecccCCC-ceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHH
Confidence 1112222222211 00 11334455655 5544444443211 1100 1123445566667777777
Q ss_pred HHHhhhcC
Q psy1086 644 SLREHQGE 651 (654)
Q Consensus 644 ~~~~~~~~ 651 (654)
.|.|.++|
T Consensus 200 ~l~e~~a~ 207 (268)
T cd04170 200 ELLEAVAE 207 (268)
T ss_pred HHHHHHhh
Confidence 77776665
No 299
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.44 E-value=3.3e-13 Score=126.07 Aligned_cols=154 Identities=23% Similarity=0.260 Sum_probs=106.6
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCccccccccc-ccchHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN-LGMGHQFLRHVE 253 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~-~~l~~~~l~~i~ 253 (654)
|.+|+++|++|||||||+++|++... .+.+++.+|..+..+.+.+.+ ..+.++|+||+.+....- .........+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC-EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 34799999999999999999998654 356788888888887777765 479999999986543210 011123445667
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
+++++++|+|+... ........... ....|.++++||+|+...... ...
T Consensus 80 ~~~~~v~v~d~~~~---------~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~-------~~~------- 128 (157)
T cd04164 80 EADLVLFVIDASRG---------LDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL-------LSL------- 128 (157)
T ss_pred hCCEEEEEEECCCC---------CCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc-------ccc-------
Confidence 78888999988731 11111111111 367999999999998754432 000
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
....+++.+||.++ .+++++++.|.+.+
T Consensus 129 ----------~~~~~~~~~Sa~~~-~~v~~l~~~l~~~~ 156 (157)
T cd04164 129 ----------LAGKPIIAISAKTG-EGLDELKEALLELA 156 (157)
T ss_pred ----------cCCCceEEEECCCC-CCHHHHHHHHHHhh
Confidence 00136899999999 99999999987653
No 300
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.44 E-value=2.7e-13 Score=148.46 Aligned_cols=157 Identities=22% Similarity=0.308 Sum_probs=111.3
Q ss_pred eecCcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccch-HHHHHH
Q psy1086 174 KLIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLRH 251 (654)
Q Consensus 174 k~~~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~-~~~l~~ 251 (654)
+.+.+|+++|.||||||||+|+|++... .+.++|+||.++....+.+++ ..+.++||||+.+....-...+ ...+..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG-IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC-eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4456899999999999999999999765 467899999999988888876 4799999999864221111111 224556
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccc
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 331 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i 331 (654)
+..+|++++|+|++.. ...+....+ .. ....|.++|+||+|+....... ..
T Consensus 292 ~~~aD~il~VvD~s~~---------~s~~~~~~l-------~~-~~~~piiiV~NK~DL~~~~~~~-------~~----- 342 (449)
T PRK05291 292 IEEADLVLLVLDASEP---------LTEEDDEIL-------EE-LKDKPVIVVLNKADLTGEIDLE-------EE----- 342 (449)
T ss_pred HHhCCEEEEEecCCCC---------CChhHHHHH-------Hh-cCCCCcEEEEEhhhccccchhh-------hc-----
Confidence 7788999999998732 011111111 11 3578999999999986533211 00
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
....++++||+++ .|++++++.+.+.+..
T Consensus 343 -------------~~~~~i~iSAktg-~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 343 -------------NGKPVIRISAKTG-EGIDELREAIKELAFG 371 (449)
T ss_pred -------------cCCceEEEEeeCC-CCHHHHHHHHHHHHhh
Confidence 0025889999999 9999999999887653
No 301
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.44 E-value=4.9e-13 Score=126.76 Aligned_cols=160 Identities=23% Similarity=0.296 Sum_probs=101.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCC----CCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIA----SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 253 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~----~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~ 253 (654)
+|+++|++|||||||++.|++...... ....+|.....+.+.+++ ..+.++|+||... +...+..++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~-------~~~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-ARLKFWDLGGQES-------LRSLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-EEEEEEECCCChh-------hHHHHHHHhC
Confidence 478999999999999999987543321 223456666777788765 5899999999643 2223344566
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhcccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 331 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i 331 (654)
.++.+++|+|.... ..+......+..+.. .....|.++++||+|+..... .+.+.+.+.......
T Consensus 73 ~~~~~v~vvd~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~ 139 (167)
T cd04160 73 ECHAIIYVIDSTDR------------ERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEI 139 (167)
T ss_pred CCCEEEEEEECchH------------HHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC-HHHHHHHhccccccc
Confidence 77888889888631 122222222222222 235689999999999865432 233333333211100
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
.....+++++||+++ .|+++++++|.+
T Consensus 140 -----------~~~~~~~~~~Sa~~g-~gv~e~~~~l~~ 166 (167)
T cd04160 140 -----------GRRDCLVLPVSALEG-TGVREGIEWLVE 166 (167)
T ss_pred -----------cCCceEEEEeeCCCC-cCHHHHHHHHhc
Confidence 001136899999999 999999988753
No 302
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.44 E-value=3.1e-13 Score=137.87 Aligned_cols=114 Identities=21% Similarity=0.294 Sum_probs=76.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccC----------------------CCcccccceeEEEEeCCCceEEEEecCCC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIAS----------------------YPFTTIKPNVGVITFDDFRKMSVADLPGL 482 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~----------------------~~~~t~~~~~~~v~~~~~~~~~i~DTpG~ 482 (654)
.+|+++|+.|+|||||+++|+.....+.. ..+.+.......+.+.+ .++.+|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~-~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD-CVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC-EEEEEEECCCc
Confidence 47999999999999999999864322111 11223333444677776 48999999996
Q ss_pred CCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh
Q psy1086 483 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 561 (654)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~ 561 (654)
.+ +...+..+++.+|++++|+|++.. + . .....+.... ...++|+++++||+|+...
T Consensus 82 ~d-------f~~~~~~~l~~aD~~IlVvda~~g---~------~-~~~~~i~~~~-----~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 ED-------FSEDTYRTLTAVDSAVMVIDAAKG---V------E-PQTRKLFEVC-----RLRGIPIITFINKLDREGR 138 (267)
T ss_pred hH-------HHHHHHHHHHHCCEEEEEEECCCC---c------c-HHHHHHHHHH-----HhcCCCEEEEEECCccCCC
Confidence 43 445566889999999999999832 1 1 1112222222 1247899999999998654
No 303
>PRK12735 elongation factor Tu; Reviewed
Probab=99.44 E-value=1.8e-12 Score=140.15 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhc------CCC----c------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRA------RPK----I------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~------~~~----~------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|++. ... . .-..++|.+.....+..++ .++.++||||+.
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~-~~i~~iDtPGh~----- 86 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN-RHYAHVDCPGHA----- 86 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC-cEEEEEECCCHH-----
Confidence 57999999999999999999862 110 0 1156777776555555554 479999999953
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEE-EEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII-LLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~i-iv~NK~Dl~~~~~v~~~ 567 (654)
.+...+...+..+|++++|+|++. ++..+ ..+.+ ..+ ...++|.+ +|+||+|+.+..+..+.
T Consensus 87 --~f~~~~~~~~~~aD~~llVvda~~---g~~~q---t~e~l----~~~-----~~~gi~~iivvvNK~Dl~~~~~~~~~ 149 (396)
T PRK12735 87 --DYVKNMITGAAQMDGAILVVSAAD---GPMPQ---TREHI----LLA-----RQVGVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred --HHHHHHHhhhccCCEEEEEEECCC---CCchh---HHHHH----HHH-----HHcCCCeEEEEEEecCCcchHHHHHH
Confidence 455566677889999999999983 22111 11111 111 12357865 57999999764444443
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCC---------CChHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS---------TDVNDAKLKIRSI 619 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~---------~gv~el~~~i~~~ 619 (654)
+.+.+.+ .+..++ | ....++++++||++|. .++.+|++.+...
T Consensus 150 ~~~ei~~---~l~~~~--~----~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 150 VEMEVRE---LLSKYD--F----PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHH---HHHHcC--C----CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 3333332 222211 0 0123679999999985 1455566555543
No 304
>KOG0076|consensus
Probab=99.44 E-value=6.8e-13 Score=120.42 Aligned_cols=166 Identities=22% Similarity=0.247 Sum_probs=118.1
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCC-----CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARP-----KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV 500 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~-----~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~ 500 (654)
.++++|..++||||++-..-.... ...+.-.+|.....+.+.+.. ..+.+||.-| ++.++..|..||
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~-~~l~fwdlgG-------Qe~lrSlw~~yY 90 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN-APLSFWDLGG-------QESLRSLWKKYY 90 (197)
T ss_pred hheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc-ceeEEEEcCC-------hHHHHHHHHHHH
Confidence 578999999999999988654321 111345567778888888885 4899999999 566888899999
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
..||++|+|+|++ +++-++.....++.+... ....+.|+++++||.|+.+...+.+ +...+.. .+.+
T Consensus 91 ~~~H~ii~viDa~---------~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~~~~~~E-l~~~~~~-~e~~- 157 (197)
T KOG0076|consen 91 WLAHGIIYVIDAT---------DRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQNAMEAAE-LDGVFGL-AELI- 157 (197)
T ss_pred HHhceeEEeecCC---------CHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhhhhhHHH-HHHHhhh-hhhc-
Confidence 9999999999999 555555555544444322 2235899999999999977643321 2222221 1111
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
..+..++.||||.+|+ ||+|-.+.+.+.+...
T Consensus 158 ----------~~rd~~~~pvSal~ge-gv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 158 ----------PRRDNPFQPVSALTGE-GVKEGIEWLVKKLEKN 189 (197)
T ss_pred ----------CCccCccccchhhhcc-cHHHHHHHHHHHHhhc
Confidence 1233478999999999 9999999888776544
No 305
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.43 E-value=4.4e-13 Score=126.34 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=96.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCC---CCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIA---SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~---~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.|+++|.+|||||||+++|++...... ..+.+|..+....+.+.+...+.++||||... +.......+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhhhc
Confidence 489999999999999999997542211 23456666666666665335799999999632 22334445667
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh---HHHHHHHHHhcccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE---IYDGIRDTLHNLKDHI 331 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~---~~~~l~~~~~~l~~~i 331 (654)
+|.+++|+|+... ........+. +......+|.++++||+|+..... ..+.+.+.+....
T Consensus 75 ad~ii~V~d~~~~------~~~~~~~~~~--------~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--- 137 (164)
T cd04171 75 IDLVLLVVAADEG------IMPQTREHLE--------ILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--- 137 (164)
T ss_pred CCEEEEEEECCCC------ccHhHHHHHH--------HHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC---
Confidence 8889999998631 0011111111 111112348999999999976432 1222333222100
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
....+++++||+++ .+++++++.+.+
T Consensus 138 ------------~~~~~~~~~Sa~~~-~~v~~l~~~l~~ 163 (164)
T cd04171 138 ------------LADAPIFPVSAVTG-EGIEELKEYLDE 163 (164)
T ss_pred ------------cCCCcEEEEeCCCC-cCHHHHHHHHhh
Confidence 00136899999999 999999887753
No 306
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.43 E-value=7.9e-13 Score=124.44 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=102.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||++++.+........|.++.+.....+.+++. ..+.+||+||.... .......+..++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF-------RSLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhccCC
Confidence 6899999999999999999998777777777777777777766542 25889999995321 112233455677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh-cCcceeEeecccCccchHh-HHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL-LEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l-~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~~ 334 (654)
++++|+|++.. .++......+..+.... ...|.++++||+|+..... ..++........
T Consensus 75 ~ii~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~------- 135 (161)
T cd01861 75 VAVVVYDITNR------------QSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL------- 135 (161)
T ss_pred EEEEEEECcCH------------HHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHh-------
Confidence 88888888631 22333333333333221 2589999999999953322 122222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
+ ..++.+||+++ .+++++++.+.+.
T Consensus 136 ----------~-~~~~~~Sa~~~-~~v~~l~~~i~~~ 160 (161)
T cd01861 136 ----------N-AMFIETSAKAG-HNVKELFRKIASA 160 (161)
T ss_pred ----------C-CEEEEEeCCCC-CCHHHHHHHHHHh
Confidence 1 25889999999 9999999988754
No 307
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.43 E-value=1e-12 Score=124.73 Aligned_cols=163 Identities=19% Similarity=0.291 Sum_probs=105.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccch----HHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG----HQFLRHV 252 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~----~~~l~~i 252 (654)
+|+++|.+|+|||||+++|++... ...+++.+|.......+...+ ..+.++|+||+....+....+. ...+.+.
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC-eeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 689999999999999999998753 345678888888777777765 4689999999865433222221 2234456
Q ss_pred HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH-hHHHHHHHHHhcccccc
Q psy1086 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNLKDHI 331 (654)
Q Consensus 253 ~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~-~~~~~l~~~~~~l~~~i 331 (654)
..++++++|+|..... ..... ++..+... ...|.++++||+|+.... ...+.+.+.+.....
T Consensus 83 ~~~d~vi~v~d~~~~~---------~~~~~-----~~~~~~~~-~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 145 (174)
T cd01895 83 ERADVVLLVIDATEGI---------TEQDL-----RIAGLILE-EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP-- 145 (174)
T ss_pred hhcCeEEEEEeCCCCc---------chhHH-----HHHHHHHh-cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc--
Confidence 6778889999886320 11111 11111111 468999999999987542 222332333222100
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
. ....+++++||+++ .+++++++.+.+
T Consensus 146 -~----------~~~~~~~~~Sa~~~-~~i~~~~~~l~~ 172 (174)
T cd01895 146 -F----------LDYAPIVFISALTG-QGVDKLFDAIDE 172 (174)
T ss_pred -c----------ccCCceEEEeccCC-CCHHHHHHHHHH
Confidence 0 01136899999999 999999988765
No 308
>KOG0462|consensus
Probab=99.43 E-value=1.5e-12 Score=137.61 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=113.5
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCcc---------------CCCcccccceeEEEEeCCCc--eEEEEecCCCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIA---------------SYPFTTIKPNVGVITFDDFR--KMSVADLPGLIEG 485 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~---------------~~~~~t~~~~~~~v~~~~~~--~~~i~DTpG~~~~ 485 (654)
+..+++++-+-.-|||||..+|+...-++. -+.++|+..++..+.|.+++ .+.++||||..++
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 445788999999999999999987544321 26799999999888887632 6899999996665
Q ss_pred CccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh--HH
Q psy1086 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA--QE 563 (654)
Q Consensus 486 ~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~--~~ 563 (654)
. .++.+.+..|+++++|+|++.. +. .+++-....-+ ..+..+|.|.||+|++.+ ..
T Consensus 139 s-------~EVsRslaac~G~lLvVDA~qG---vq------AQT~anf~lAf------e~~L~iIpVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 139 S-------GEVSRSLAACDGALLVVDASQG---VQ------AQTVANFYLAF------EAGLAIIPVLNKIDLPSADPER 196 (650)
T ss_pred c-------ceehehhhhcCceEEEEEcCcC---ch------HHHHHHHHHHH------HcCCeEEEeeeccCCCCCCHHH
Confidence 4 4445788999999999999943 22 12222222222 257889999999999865 33
Q ss_pred HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 564 IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+..++.+.+. .+ ..+++.+|||+|. |++++++.|.+.+.
T Consensus 197 V~~q~~~lF~-------~~-----------~~~~i~vSAK~G~-~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 197 VENQLFELFD-------IP-----------PAEVIYVSAKTGL-NVEELLEAIIRRVP 235 (650)
T ss_pred HHHHHHHHhc-------CC-----------ccceEEEEeccCc-cHHHHHHHHHhhCC
Confidence 4444333322 21 2357999999999 99999999987663
No 309
>PLN03127 Elongation factor Tu; Provisional
Probab=99.42 E-value=3.5e-12 Score=139.13 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhc------CCC----------ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRA------RPK----------IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~------~~~----------~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|.+. ... ....+++|++.....+..++ .++.++||||+.+
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~~iDtPGh~~---- 136 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK-RHYAHVDCPGHAD---- 136 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC-eEEEEEECCCccc----
Confidence 57999999999999999999732 111 01247888887766666655 4799999999643
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~ 567 (654)
+...+...+..+|++++|+|++. ++..+++ +.+ ..+ ...++| +|+|+||||+.+..+..+.
T Consensus 137 ---f~~~~~~g~~~aD~allVVda~~---g~~~qt~---e~l----~~~-----~~~gip~iIvviNKiDlv~~~~~~~~ 198 (447)
T PLN03127 137 ---YVKNMITGAAQMDGGILVVSAPD---GPMPQTK---EHI----LLA-----RQVGVPSLVVFLNKVDVVDDEELLEL 198 (447)
T ss_pred ---hHHHHHHHHhhCCEEEEEEECCC---CCchhHH---HHH----HHH-----HHcCCCeEEEEEEeeccCCHHHHHHH
Confidence 44455566678999999999973 2222221 111 111 123678 5788999999865544444
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeee---cCCCC-------hHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK---TNSTD-------VNDAKLKIRSI 619 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAk---tg~~g-------v~el~~~i~~~ 619 (654)
+.+.+.++.... .|. ...+|++++||. +|. | +.+|++.+.+.
T Consensus 199 i~~~i~~~l~~~-----~~~----~~~vpiip~Sa~sa~~g~-n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 199 VEMELRELLSFY-----KFP----GDEIPIIRGSALSALQGT-NDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHHHHHHHHh-----CCC----CCcceEEEeccceeecCC-CcccccchHHHHHHHHHHh
Confidence 433333322111 010 123678898876 454 4 55666655544
No 310
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.42 E-value=5.3e-12 Score=123.39 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=92.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccc---cceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTI---KPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~---~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
.+|+++|.+|+|||||+|.+++..........+.. ......+.......+.+|||||+.+.......+.. ...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~--~~~~~ 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLE--EMKFS 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHH--HhCcc
Confidence 47999999999999999999986543222111110 01111122222236899999998754322221111 11256
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH------------HHHHHHH
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ------------EIYDGIR 569 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~------------~v~~~~~ 569 (654)
.+|++++|.|.. + ++ .-..|.+++.. .+.|+++|+||+|+.... ++.+++.
T Consensus 80 ~~d~~l~v~~~~-~----~~-------~d~~~~~~l~~-----~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~ 142 (197)
T cd04104 80 EYDFFIIISSTR-F----SS-------NDVKLAKAIQC-----MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIR 142 (197)
T ss_pred CcCEEEEEeCCC-C----CH-------HHHHHHHHHHH-----hCCCEEEEEecccchhhhhhccccccccHHHHHHHHH
Confidence 789988885432 1 11 11123333322 258999999999985321 1122222
Q ss_pred HHHHhhHhhhccCCCCCCccccccccceEEEeee--cCCCChHHHHHHHHHHHH
Q psy1086 570 DTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK--TNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAk--tg~~gv~el~~~i~~~~~ 621 (654)
+... +.+... .....++|.+||. .+. ++..|.+.+...+-
T Consensus 143 ~~~~---~~~~~~--------~~~~p~v~~vS~~~~~~~-~~~~l~~~~~~~l~ 184 (197)
T cd04104 143 DNCL---ENLQEA--------GVSEPPVFLVSNFDPSDY-DFPKLRETLLKDLP 184 (197)
T ss_pred HHHH---HHHHHc--------CCCCCCEEEEeCCChhhc-ChHHHHHHHHHHhh
Confidence 2221 111111 1233569999998 577 99999998877654
No 311
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.42 E-value=2.1e-12 Score=139.91 Aligned_cols=145 Identities=24% Similarity=0.274 Sum_probs=88.8
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------------cEEE
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------------KMSV 228 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------------~~~i 228 (654)
.++|+|++..|+.+||||.+||||||+.++|.|..|.-. ....|.+.+++.. .+.+
T Consensus 25 v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-------~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-------RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred eecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-------cccceEEEECCcchhcCCHHHHHHhccccEEEEe
Confidence 467888888888999999999999999999999644211 2235777665520 0112
Q ss_pred EecCcccccccccc--cchHHHH----HHH-----HHHHHHHHhhcccCcccCCCCCcc--ChHHHHHHHHHHHHHHhHh
Q psy1086 229 ADLPGLIEGAHRNL--GMGHQFL----RHV-----ERTKLIAMIVDVNGFQLGLKHPKR--SCVETVLLLNKELELYKMN 295 (654)
Q Consensus 229 ~D~PGl~~~~~~~~--~l~~~~l----~~i-----~~~~~il~vvd~~~~~l~~~~~~~--~~~~~l~~~~~el~~~~~~ 295 (654)
.|... +.|. .++.++. .|- +....++.+++..+ +.++.. ..-..+|++++|+..++.+
T Consensus 98 Q~p~~-----slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vg----l~~~~~~~~yPheLSGG~rQRv~iAmA 168 (539)
T COG1123 98 QDPMT-----SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVG----LPDPERRDRYPHQLSGGMRQRVMIAMA 168 (539)
T ss_pred cCchh-----hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcC----CCChhhhccCCcccCchHHHHHHHHHH
Confidence 22111 1111 1222221 111 11122233333322 122222 3557899999999999999
Q ss_pred hcCcceeEee----cccCccchHhHHHHHHHHHhc
Q psy1086 296 LLEKPIILLV----NKMDVEGAQEIYDGIRDTLHN 326 (654)
Q Consensus 296 l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~~~ 326 (654)
++.+|.++++ +-+|...+.+.++.+++..++
T Consensus 169 La~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e 203 (539)
T COG1123 169 LALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE 203 (539)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH
Confidence 9999999998 778877777777666665543
No 312
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.42 E-value=6.5e-13 Score=153.13 Aligned_cols=158 Identities=24% Similarity=0.406 Sum_probs=109.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc--ccchHHHHHH---H
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN--LGMGHQFLRH---V 252 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~--~~l~~~~l~~---i 252 (654)
+|+|+|.||||||||+|+|+|.+..+.++|++|.++..|.+.+++ ..+.++||||..+..... ....+...+. .
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~-~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc-eEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 699999999999999999999999999999999999999998766 479999999987643221 1222222221 1
Q ss_pred HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccc
Q psy1086 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 253 ~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~ 332 (654)
+.+|++++|+|.+.. + ..+. +..++.. ...|.++++||+|..........+.+..+.+
T Consensus 84 ~~aD~vI~VvDat~l--------e---r~l~-l~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L----- 141 (772)
T PRK09554 84 GDADLLINVVDASNL--------E---RNLY-LTLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARL----- 141 (772)
T ss_pred cCCCEEEEEecCCcc--------h---hhHH-HHHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh-----
Confidence 356788888888632 1 1111 2222221 4789999999999864433222222221111
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||.++ +|++++.+.+.+..
T Consensus 142 ------------G-~pVvpiSA~~g-~GIdeL~~~I~~~~ 167 (772)
T PRK09554 142 ------------G-CPVIPLVSTRG-RGIEALKLAIDRHQ 167 (772)
T ss_pred ------------C-CCEEEEEeecC-CCHHHHHHHHHHhh
Confidence 1 26899999999 99999999987654
No 313
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=7.7e-13 Score=124.98 Aligned_cols=165 Identities=22% Similarity=0.312 Sum_probs=104.5
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccC--CCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHH----H
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRAR--PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQF----L 249 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~--~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~----l 249 (654)
..-|+++|++|+|||||+|+|++.+ .+.+..|+.|..++.-.+ ++ .+.++|+||+.- +.-.......+ .
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~--~~~lVDlPGYGy-Akv~k~~~e~w~~~i~ 98 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD--ELRLVDLPGYGY-AKVPKEVKEKWKKLIE 98 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC--cEEEEeCCCccc-ccCCHHHHHHHHHHHH
Confidence 3459999999999999999999977 678899999998886544 33 489999999742 11111111122 2
Q ss_pred HHH---HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhc
Q psy1086 250 RHV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHN 326 (654)
Q Consensus 250 ~~i---~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~ 326 (654)
..+ .....+++++|+... .. ..+++...|... ...|.++++||+|.....+....+....+.
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~-----------~~---~~D~em~~~l~~-~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~ 163 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHP-----------PK---DLDREMIEFLLE-LGIPVIVVLTKADKLKKSERNKQLNKVAEE 163 (200)
T ss_pred HHHhhchhheEEEEEEECCCC-----------Cc---HHHHHHHHHHHH-cCCCeEEEEEccccCChhHHHHHHHHHHHH
Confidence 222 223344556676531 11 223355555443 688999999999998865544333332222
Q ss_pred cccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 327 l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+... .+ +. ..++..|+..+ .|++++...|.+.+.
T Consensus 164 l~~~---~~-------~~--~~~~~~ss~~k-~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 164 LKKP---PP-------DD--QWVVLFSSLKK-KGIDELKAKILEWLK 197 (200)
T ss_pred hcCC---CC-------cc--ceEEEEecccc-cCHHHHHHHHHHHhh
Confidence 1100 00 00 12788899999 999999999887764
No 314
>KOG0071|consensus
Probab=99.41 E-value=2.3e-12 Score=112.54 Aligned_cols=158 Identities=22% Similarity=0.317 Sum_probs=111.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.++.++|-.++||||++..+.-... ....| |+.+....+.+.+. ++.+||..|+ ..++..|..|+.+..
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ip--TvGFnvetVtykN~-kfNvwdvGGq-------d~iRplWrhYy~gtq 86 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQS-VTTIP--TVGFNVETVTYKNV-KFNVWDVGGQ-------DKIRPLWRHYYTGTQ 86 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCC-ccccc--ccceeEEEEEeeee-EEeeeeccCc-------hhhhHHHHhhccCCc
Confidence 5899999999999999998876532 22233 56677788888874 8999999994 447788899999999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhh--cccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
++|+|+|+++ + ..+.+..+|++... .+..+.|++|++||.|++++... .++.+.+ ++.. ..
T Consensus 87 glIFV~Dsa~---------~---dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p-qei~d~l-eLe~---~r 149 (180)
T KOG0071|consen 87 GLIFVVDSAD---------R---DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP-QEIQDKL-ELER---IR 149 (180)
T ss_pred eEEEEEeccc---------h---hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH-HHHHHHh-cccc---cc
Confidence 9999999883 2 34445555665442 34457899999999999876422 1122222 1111 11
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...| .+.|+||.+|. ++.|=|..+....
T Consensus 150 ~~~W---------~vqp~~a~~gd-gL~eglswlsnn~ 177 (180)
T KOG0071|consen 150 DRNW---------YVQPSCALSGD-GLKEGLSWLSNNL 177 (180)
T ss_pred CCcc---------Eeeccccccch-hHHHHHHHHHhhc
Confidence 1122 37899999999 9999888776544
No 315
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.41 E-value=9.3e-13 Score=152.15 Aligned_cols=117 Identities=24% Similarity=0.350 Sum_probs=84.6
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCc------c------------CCCcccccceeEEEEeCCCceEEEEecCCCC
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKI------A------------SYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~------~------------~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~ 483 (654)
.+..+|+++|+.++|||||+++|+.....+ . ...++|++.....+.|++ .++.+|||||+.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~-~~i~liDTPG~~ 86 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG-HRINIIDTPGHV 86 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC-eEEEEEECCCCc
Confidence 345689999999999999999997532211 0 145788888888899987 489999999975
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 561 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~ 561 (654)
+ +...+..+++.+|++++|+|+++ ++.. ++...| ..+ ...++|+++|+||+|+...
T Consensus 87 ~-------~~~~~~~~l~~~D~~ilVvda~~---g~~~------~~~~~~-~~~-----~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 D-------FTVEVERSLRVLDGAVAVLDAVG---GVQP------QSETVW-RQA-----NRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred c-------hhHHHHHHHHHhCEEEEEEeCCC---CCCh------hHHHHH-HHH-----HHcCCCEEEEEECCCCCCC
Confidence 5 33356688999999999999983 2222 222222 122 1246899999999999854
No 316
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.41 E-value=2.7e-12 Score=147.03 Aligned_cols=154 Identities=25% Similarity=0.284 Sum_probs=97.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccC---------------------------------CCcccccceeEEEEeCCC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIAS---------------------------------YPFTTIKPNVGVITFDDF 471 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~---------------------------------~~~~t~~~~~~~v~~~~~ 471 (654)
.+|+++|+.++|||||+++|+.....+.. ..++|++.....+.+++
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~- 103 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK- 103 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC-
Confidence 47999999999999999999875433221 23455566666666666
Q ss_pred ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEE
Q psy1086 472 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 551 (654)
Q Consensus 472 ~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~ii 551 (654)
.++.++||||+. .+...+...+..+|++++|+|++. ++..++++ .+. .+.. ...+|+||
T Consensus 104 ~~~~liDtPG~~-------~f~~~~~~~~~~aD~~llVvda~~---g~~~~t~e---~~~----~~~~----~~~~~iiv 162 (632)
T PRK05506 104 RKFIVADTPGHE-------QYTRNMVTGASTADLAIILVDARK---GVLTQTRR---HSF----IASL----LGIRHVVL 162 (632)
T ss_pred ceEEEEECCChH-------HHHHHHHHHHHhCCEEEEEEECCC---CccccCHH---HHH----HHHH----hCCCeEEE
Confidence 479999999953 344445567889999999999973 33333222 111 1111 11357889
Q ss_pred EEeCCCccC-hHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHH
Q psy1086 552 LVNKMDVEG-AQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDA 612 (654)
Q Consensus 552 v~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el 612 (654)
|+||+|+.+ .++..+++.+.+.++ ....+ ....+++|+||++|. |++++
T Consensus 163 vvNK~D~~~~~~~~~~~i~~~i~~~---~~~~~--------~~~~~iipiSA~~g~-ni~~~ 212 (632)
T PRK05506 163 AVNKMDLVDYDQEVFDEIVADYRAF---AAKLG--------LHDVTFIPISALKGD-NVVTR 212 (632)
T ss_pred EEEecccccchhHHHHHHHHHHHHH---HHHcC--------CCCccEEEEecccCC-Ccccc
Confidence 999999975 223233333222222 11111 123568999999999 99854
No 317
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.41 E-value=1.5e-13 Score=122.31 Aligned_cols=113 Identities=31% Similarity=0.562 Sum_probs=83.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC-CCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccc--cchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRAR-PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL--GMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~-~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~--~l~~~~l~~i~~ 254 (654)
+|+|+|++|||||||+|+|++.. ..+++++++|..+..+.+.+++ ..+.++||||+.+...... .....+++.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN-KKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT-EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece-eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 58999999999999999999964 3678899999999888888876 5789999999987544322 133457777778
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNK 307 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK 307 (654)
+|++++|+|... ...+....+.+++ . ..+|.++|+||
T Consensus 80 ~d~ii~vv~~~~----------~~~~~~~~~~~~l----~--~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASN----------PITEDDKNILREL----K--NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTS----------HSHHHHHHHHHHH----H--TTSEEEEEEES
T ss_pred CCEEEEEEECCC----------CCCHHHHHHHHHH----h--cCCCEEEEEcC
Confidence 888999999652 0012222232333 2 67899999998
No 318
>PLN03126 Elongation factor Tu; Provisional
Probab=99.40 E-value=7.7e-12 Score=137.14 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=98.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC----------------ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK----------------IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~----------------~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+++++|+.++|||||+++|++.... .....++|.+.....+.+++ .++.+|||||+
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-~~i~liDtPGh------ 154 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGH------ 154 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC-cEEEEEECCCH------
Confidence 57999999999999999999863111 11245677766666666665 48999999995
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~ 567 (654)
+.+...+...+..+|++++|+|+... +..+ +.+ +...+ ...++| +|+++||||+.+..+..+.
T Consensus 155 -~~f~~~~~~g~~~aD~ailVVda~~G---~~~q---t~e----~~~~~-----~~~gi~~iIvvvNK~Dl~~~~~~~~~ 218 (478)
T PLN03126 155 -ADYVKNMITGAAQMDGAILVVSGADG---PMPQ---TKE----HILLA-----KQVGVPNMVVFLNKQDQVDDEELLEL 218 (478)
T ss_pred -HHHHHHHHHHHhhCCEEEEEEECCCC---CcHH---HHH----HHHHH-----HHcCCCeEEEEEecccccCHHHHHHH
Confidence 34555667778899999999999832 2222 111 11111 123677 7789999999875544444
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCC
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS 606 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~ 606 (654)
+.+++ ++.+..++ |. ....+++++||.+|.
T Consensus 219 i~~~i---~~~l~~~g--~~----~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 219 VELEV---RELLSSYE--FP----GDDIPIISGSALLAL 248 (478)
T ss_pred HHHHH---HHHHHhcC--CC----cCcceEEEEEccccc
Confidence 44333 33333221 10 135789999999986
No 319
>KOG1145|consensus
Probab=99.40 E-value=4.8e-12 Score=133.62 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=120.0
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
++.+-|-++|+-.-|||||+..|.+........-++|.+.-...+.++.++.++++|||| +..|..+.-+-..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPG-------HaAF~aMRaRGA~ 223 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPG-------HAAFSAMRARGAN 223 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCc-------HHHHHHHHhccCc
Confidence 456789999999999999999999987777778888888877788888778999999999 5556666656667
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH--HHHHHHHHHHHhhHhhh
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~--~v~~~~~~~~~~~~~~~ 579 (654)
-+|++++|+-+.+ ++-.| +.|.++.. ...+.|+||+.||||.+... .+..++.+.
T Consensus 224 vtDIvVLVVAadD---GVmpQ---T~EaIkhA---------k~A~VpiVvAinKiDkp~a~pekv~~eL~~~-------- 280 (683)
T KOG1145|consen 224 VTDIVVLVVAADD---GVMPQ---TLEAIKHA---------KSANVPIVVAINKIDKPGANPEKVKRELLSQ-------- 280 (683)
T ss_pred cccEEEEEEEccC---CccHh---HHHHHHHH---------HhcCCCEEEEEeccCCCCCCHHHHHHHHHHc--------
Confidence 7899999999984 33333 33333322 22589999999999988542 233222210
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+......+++|+||++|. |+++|-+.+.-+..
T Consensus 281 -----gi~~E~~GGdVQvipiSAl~g~-nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 281 -----GIVVEDLGGDVQVIPISALTGE-NLDLLEEAILLLAE 316 (683)
T ss_pred -----CccHHHcCCceeEEEeecccCC-ChHHHHHHHHHHHH
Confidence 1111222455679999999999 99999998865543
No 320
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.40 E-value=1.9e-12 Score=121.63 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=95.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++++++.. ....|+.|+.......+.+++. ..+.+||+||.... .......+..++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~l~~~~~~~~~ 74 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAMRDQYMRTGE 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch-------HHHHHHHHhcCC
Confidence 68999999999999999999754 2344544443333333444432 23678999995321 112223444567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++++|+.+ ...+..+.....++..+. .....|.++|+||+|+...........+.....
T Consensus 75 ~~i~v~~~~~---------~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--------- 135 (162)
T cd04138 75 GFLCVFAINS---------RKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY--------- 135 (162)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccceecHHHHHHHHHHh---------
Confidence 7777777753 123333333333333332 124679999999999875332222222222211
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
+ ..++++||+++ .|++++++.+.+.
T Consensus 136 --------~-~~~~~~Sa~~~-~gi~~l~~~l~~~ 160 (162)
T cd04138 136 --------G-IPYIETSAKTR-QGVEEAFYTLVRE 160 (162)
T ss_pred --------C-CeEEEecCCCC-CCHHHHHHHHHHH
Confidence 1 25889999999 9999999888654
No 321
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.40 E-value=3.9e-13 Score=130.67 Aligned_cols=156 Identities=23% Similarity=0.264 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHh
Q psy1086 246 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 246 ~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~ 325 (654)
..+...+++++++++|+|+.... ... ..++ ......+|.++|+||+|+.........+..+..
T Consensus 26 ~~l~~~~~~ad~il~VvD~~~~~-------~~~-------~~~l---~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~ 88 (190)
T cd01855 26 NLLSSISPKKALVVHVVDIFDFP-------GSL-------IPRL---RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLR 88 (190)
T ss_pred HHHHhcccCCcEEEEEEECccCC-------Ccc-------chhH---HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHH
Confidence 34445567889999999987421 000 0111 112256899999999998654322222222220
Q ss_pred ccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCC
Q psy1086 326 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQN 405 (654)
Q Consensus 326 ~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 405 (654)
... ... ....+..++++||+++ ++++++++.+.+.++.
T Consensus 89 ~~~--~~~--------~~~~~~~i~~vSA~~~-~gi~eL~~~l~~~l~~------------------------------- 126 (190)
T cd01855 89 AKA--AAG--------LGLKPKDVILISAKKG-WGVEELINAIKKLAKK------------------------------- 126 (190)
T ss_pred HHH--Hhh--------cCCCcccEEEEECCCC-CCHHHHHHHHHHHhhc-------------------------------
Confidence 000 000 0001125899999999 9999999988765430
Q ss_pred CcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC---------CccCCCcccccceeEEEEeCCCceEEE
Q psy1086 406 GWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP---------KIASYPFTTIKPNVGVITFDDFRKMSV 476 (654)
Q Consensus 406 ~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~---------~~~~~~~~t~~~~~~~v~~~~~~~~~i 476 (654)
..+++++|.+|+|||||+|.|++... ..+..|++|+++....+ +. .+.+
T Consensus 127 ------------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~--~~~~ 184 (190)
T cd01855 127 ------------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--GN--GKKL 184 (190)
T ss_pred ------------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--CC--CCEE
Confidence 13689999999999999999998542 44567889988765444 32 4799
Q ss_pred EecCCC
Q psy1086 477 ADLPGL 482 (654)
Q Consensus 477 ~DTpG~ 482 (654)
+||||+
T Consensus 185 ~DtPG~ 190 (190)
T cd01855 185 YDTPGI 190 (190)
T ss_pred EeCcCC
Confidence 999995
No 322
>PRK00007 elongation factor G; Reviewed
Probab=99.39 E-value=9.9e-13 Score=151.72 Aligned_cols=160 Identities=24% Similarity=0.315 Sum_probs=105.1
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCC---Cc---c------------CCCcccccceeEEEEeCCCceEEEEecCCCC
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARP---KI---A------------SYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~---~~---~------------~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~ 483 (654)
.+..+|+++|+.++|||||+++|+.... .. . ...++|++.....+.|.+ .++.++||||+.
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~-~~~~liDTPG~~ 86 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD-HRINIIDTPGHV 86 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC-eEEEEEeCCCcH
Confidence 3456899999999999999999974211 11 1 256788888888888987 589999999954
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE 563 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~ 563 (654)
+ +...+...++.+|++++|+|++. ++..+++ ..|. .+ ...++|.|+++||||+.+..
T Consensus 87 ~-------f~~ev~~al~~~D~~vlVvda~~---g~~~qt~------~~~~-~~-----~~~~~p~iv~vNK~D~~~~~- 143 (693)
T PRK00007 87 D-------FTIEVERSLRVLDGAVAVFDAVG---GVEPQSE------TVWR-QA-----DKYKVPRIAFVNKMDRTGAD- 143 (693)
T ss_pred H-------HHHHHHHHHHHcCEEEEEEECCC---CcchhhH------HHHH-HH-----HHcCCCEEEEEECCCCCCCC-
Confidence 3 44557788999999999999873 3333322 1121 11 12468999999999998543
Q ss_pred HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 564 IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.. +.+..+++.+.. ......+|+||.++..|+.+++......
T Consensus 144 ~~----~~~~~i~~~l~~----------~~~~~~ipisa~~~f~g~~d~~~~~~~~ 185 (693)
T PRK00007 144 FY----RVVEQIKDRLGA----------NPVPIQLPIGAEDDFKGVVDLVKMKAII 185 (693)
T ss_pred HH----HHHHHHHHHhCC----------CeeeEEecCccCCcceEEEEcceeeeee
Confidence 11 122233332211 1223568889988754666666544333
No 323
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.39 E-value=2.2e-12 Score=121.37 Aligned_cols=161 Identities=27% Similarity=0.351 Sum_probs=100.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCccccccccc-ccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN-LGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~-~~l~~~~l~~i~~~ 255 (654)
+|+++|++|||||||++.|++.... +.+.+.++.....+...... ..+.++|+||+....... ..+.......+..+
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-AQIIFVDTPGIHKPKKKLGERMVKAAWSALKDV 83 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-eEEEEEECCCCCcchHHHHHHHHHHHHHHHHhC
Confidence 6999999999999999999987543 34455666666665554433 478999999986543221 11222334445666
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++++|.... ...... .....+.. ...|.++++||+|+.........+.+.+...
T Consensus 84 d~i~~v~d~~~~-------~~~~~~---~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------- 140 (168)
T cd04163 84 DLVLFVVDASEP-------IGEGDE---FILELLKK-----SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL-------- 140 (168)
T ss_pred CEEEEEEECCCc-------cCchHH---HHHHHHHH-----hCCCEEEEEEchhccccHHHHHHHHHHHHhc--------
Confidence 777888888631 111111 11111111 2589999999999974333333333333221
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
....+++.+|++++ .+++++.+.+.+.
T Consensus 141 --------~~~~~~~~~s~~~~-~~~~~l~~~l~~~ 167 (168)
T cd04163 141 --------GPFAEIFPISALKG-ENVDELLEEIVKY 167 (168)
T ss_pred --------cCCCceEEEEeccC-CChHHHHHHHHhh
Confidence 11236899999999 9999999988754
No 324
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=8.3e-12 Score=122.58 Aligned_cols=169 Identities=16% Similarity=0.243 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEE-EeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVI-TFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v-~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.++.+.|.+|+||||++|+|........+.-+++.++..... .+++ ..+.+|||||+.+........+..+..++...
T Consensus 40 vnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~ 118 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKL 118 (296)
T ss_pred eeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhhHHHHHHHHHHhhhc
Confidence 467899999999999999999766655554444444444333 3444 57999999999988766666788888999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh------------HHHHHHHHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA------------QEIYDGIRDT 571 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~------------~~v~~~~~~~ 571 (654)
|+++.++|+.+ +..--....|.+-+. .....+++++.|.+|.... ..+.+++.+.
T Consensus 119 DLvL~l~~~~d---------raL~~d~~f~~dVi~----~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 119 DLVLWLIKADD---------RALGTDEDFLRDVII----LGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred cEEEEeccCCC---------ccccCCHHHHHHHHH----hccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 99999999983 332222333433322 2245899999999997532 2344445444
Q ss_pred HHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 572 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+.+.++++ .-.|++.+|+..+. |+++|...+...+
T Consensus 186 ~~~~~~~~q------------~V~pV~~~~~r~~w-gl~~l~~ali~~l 221 (296)
T COG3596 186 AEALGRLFQ------------EVKPVVAVSGRLPW-GLKELVRALITAL 221 (296)
T ss_pred HHHHHHHHh------------hcCCeEEeccccCc-cHHHHHHHHHHhC
Confidence 444444442 23478889999999 9999999988655
No 325
>PRK12739 elongation factor G; Reviewed
Probab=99.38 E-value=3.1e-12 Score=147.70 Aligned_cols=160 Identities=21% Similarity=0.259 Sum_probs=104.2
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCc------c------------CCCcccccceeEEEEeCCCceEEEEecCCCC
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKI------A------------SYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~------~------------~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~ 483 (654)
.+..+|+++|+.++|||||+++|+.....+ . ...++|.+.....+.|++ .++.+|||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~-~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG-HRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC-EEEEEEcCCCHH
Confidence 345689999999999999999997531110 1 256788888888899977 589999999964
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE 563 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~ 563 (654)
+ +...+..+++.+|++++|+|++. ++..++ ...| ..+ ...++|.|+++||||+....
T Consensus 85 ~-------f~~e~~~al~~~D~~ilVvDa~~---g~~~qt------~~i~-~~~-----~~~~~p~iv~iNK~D~~~~~- 141 (691)
T PRK12739 85 D-------FTIEVERSLRVLDGAVAVFDAVS---GVEPQS------ETVW-RQA-----DKYGVPRIVFVNKMDRIGAD- 141 (691)
T ss_pred H-------HHHHHHHHHHHhCeEEEEEeCCC---CCCHHH------HHHH-HHH-----HHcCCCEEEEEECCCCCCCC-
Confidence 3 55567889999999999999983 222221 1111 111 12468999999999998542
Q ss_pred HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 564 IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
. .+.++++++.+.. ......+|+||..+..++-+++..-...
T Consensus 142 ~----~~~~~~i~~~l~~----------~~~~~~iPis~~~~f~g~vd~~~~~~~~ 183 (691)
T PRK12739 142 F----FRSVEQIKDRLGA----------NAVPIQLPIGAEDDFKGVIDLIKMKAII 183 (691)
T ss_pred H----HHHHHHHHHHhCC----------CceeEEecccccccceEEEEcchhhhhh
Confidence 1 1122223332211 1112357888887765555555444333
No 326
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.38 E-value=2.2e-12 Score=126.17 Aligned_cols=169 Identities=14% Similarity=0.131 Sum_probs=98.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccc-cccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHR-NLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~-~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|||||||++.+.+........|.++.....-.+.+++. ..+.++||||....... ...........+..+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999875433222333322323334445442 24679999997543211 001111123445678
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH-hhcCcceeEeecccCccchHhHH-HHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-NLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~-~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~ 333 (654)
|++++|+|++. ...++.+..+..++..+.. .....|.+++.||+|+...+... +.+.++....
T Consensus 82 d~iilv~D~~~---------~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~------ 146 (198)
T cd04142 82 RAFILVYDICS---------PDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKS------ 146 (198)
T ss_pred CEEEEEEECCC---------HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHh------
Confidence 88999999863 2233333333333333221 12457999999999996532211 1121111110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+ ..++++||+++ .|++++++.+.+.+-
T Consensus 147 ----------~~-~~~~e~Sak~g-~~v~~lf~~i~~~~~ 174 (198)
T cd04142 147 ----------WK-CGYLECSAKYN-WHILLLFKELLISAT 174 (198)
T ss_pred ----------cC-CcEEEecCCCC-CCHHHHHHHHHHHhh
Confidence 01 25899999999 999999988875543
No 327
>PRK00049 elongation factor Tu; Reviewed
Probab=99.37 E-value=1.4e-11 Score=133.25 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=95.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC----------------ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK----------------IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~----------------~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|++.... ..-..++|.+.....+.+++ .++.++||||+.
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~-~~i~~iDtPG~~----- 86 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK-RHYAHVDCPGHA----- 86 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC-eEEEEEECCCHH-----
Confidence 57999999999999999999873110 01156778777655555544 479999999953
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEE-EEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII-LLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~i-iv~NK~Dl~~~~~v~~~ 567 (654)
.+...+...+..||++++|+|++. ++..++ .+ +...+. ..+.|.+ +++||+|+.+..+..+.
T Consensus 87 --~f~~~~~~~~~~aD~~llVVDa~~---g~~~qt---~~----~~~~~~-----~~g~p~iiVvvNK~D~~~~~~~~~~ 149 (396)
T PRK00049 87 --DYVKNMITGAAQMDGAILVVSAAD---GPMPQT---RE----HILLAR-----QVGVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred --HHHHHHHhhhccCCEEEEEEECCC---CCchHH---HH----HHHHHH-----HcCCCEEEEEEeecCCcchHHHHHH
Confidence 355556677889999999999973 222221 11 111111 2357876 57999999864444433
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCC
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS 606 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~ 606 (654)
+.+.+ .+.+..++ | .....+++++||++|.
T Consensus 150 ~~~~i---~~~l~~~~--~----~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 150 VEMEV---RELLSKYD--F----PGDDTPIIRGSALKAL 179 (396)
T ss_pred HHHHH---HHHHHhcC--C----CccCCcEEEeeccccc
Confidence 33333 22332211 1 0134689999999975
No 328
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.37 E-value=2.9e-12 Score=121.28 Aligned_cols=157 Identities=18% Similarity=0.124 Sum_probs=97.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|++|||||||++.+++........|..+.......+..++. ..+.++|+||..... ......+..+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR-------AITSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHHCCC
Confidence 37999999999999999999987655555565555555555555542 257899999964211 1122334456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh-cCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL-LEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l-~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|++.. ..+..+...+..+.... ...|.+++.||+|+...... .+.........
T Consensus 77 ~~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~------ 138 (165)
T cd01868 77 VGALLVYDITKK------------QTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN------ 138 (165)
T ss_pred CEEEEEEECcCH------------HHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHc------
Confidence 667788887631 22333333333332222 24788999999998653221 22222222110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
+ ..++++||+++ .+++++++.+.+.
T Consensus 139 -----------~-~~~~~~Sa~~~-~~v~~l~~~l~~~ 163 (165)
T cd01868 139 -----------G-LSFIETSALDG-TNVEEAFKQLLTE 163 (165)
T ss_pred -----------C-CEEEEEECCCC-CCHHHHHHHHHHH
Confidence 0 25899999999 9999999988654
No 329
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.37 E-value=1e-12 Score=128.34 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=102.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCC--CCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHH--
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIAS--YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE-- 253 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~--~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~-- 253 (654)
+|+|+|.+|||||||+|+|+|....... .+..|..++.+...+.+ .++.++||||+.+.......+...+.+.+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~-~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG-RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC-eEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 5899999999999999999998766554 35778888888877766 589999999998654322223333333222
Q ss_pred --HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccc
Q psy1086 254 --RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 331 (654)
Q Consensus 254 --~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i 331 (654)
..+++++|+++..+ ...+...+..-...|... ..++.++|+++.|........+.+...-..+...+
T Consensus 81 ~~g~~~illVi~~~~~----------t~~d~~~l~~l~~~fg~~-~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~ 149 (196)
T cd01852 81 APGPHAFLLVVPLGRF----------TEEEEQAVETLQELFGEK-VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL 149 (196)
T ss_pred CCCCEEEEEEEECCCc----------CHHHHHHHHHHHHHhChH-hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHH
Confidence 23566777766521 111222222222223322 34678889999987654332222222111111222
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+..++. .|..... ++..+ .++.+|++.+.+++..
T Consensus 150 ~~c~~r~~-----~f~~~~~-~~~~~-~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 150 EKCGGRYV-----AFNNKAK-GEEQE-QQVKELLAKVESMVKE 185 (196)
T ss_pred HHhCCeEE-----EEeCCCC-cchhH-HHHHHHHHHHHHHHHh
Confidence 22211110 0011112 35667 8899999999888765
No 330
>KOG0066|consensus
Probab=99.37 E-value=1.1e-11 Score=127.60 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=86.6
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccc---ccccccc
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIE---GAHRNLG 243 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~---~~~~~~~ 243 (654)
-+.+|.+-.|.|.|||||||-||||||+-|+..... +.|++-.+.... .++.-+++.+.. .......
T Consensus 281 vnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala--------IPpnIDvLlCEQ--Evvad~t~Ai~tvl~aD~kRl~ 350 (807)
T KOG0066|consen 281 VNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA--------IPPNIDVLLCEQ--EVVADSTSAIDTVLKADKKRLA 350 (807)
T ss_pred eccceEEEecceecccCCCCCchHHHHHHHHhhhcc--------CCCCCceEeeee--eeeecCcHHHHHHHHhhHHHHH
Confidence 356788889999999999999999999999875443 334444444332 244444444311 0000000
Q ss_pred -------chHHH-----------------HHHH------HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh
Q psy1086 244 -------MGHQF-----------------LRHV------ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK 293 (654)
Q Consensus 244 -------l~~~~-----------------l~~i------~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~ 293 (654)
+..++ ++.+ .++..++--+.++ ...++.|...++++++.+..++
T Consensus 351 lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFs------kEMQ~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 351 LLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFS------KEMQERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCC------hhHhcCCccccCCceeeehhHH
Confidence 00000 0000 1111222111111 2344678889999999999999
Q ss_pred HhhcCcceeEee----cccCccchHhHHHHHHHHH
Q psy1086 294 MNLLEKPIILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 294 ~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
++|.-.|.++.+ |++|+...-|+-.++.-|.
T Consensus 425 RALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk 459 (807)
T KOG0066|consen 425 RALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK 459 (807)
T ss_pred HHHhcCceeeeecCCccccccceeeehhhHHhhhh
Confidence 999999999988 9999977777666665543
No 331
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.37 E-value=2.2e-12 Score=140.45 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=107.4
Q ss_pred EeecCcEEEEcCCCCcHHHHHHHHHccC-CCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccch-HHHHH
Q psy1086 173 LKLIADIGLVGFPNAGKSTFLKAISRAR-PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLR 250 (654)
Q Consensus 173 lk~~~~VgLVG~~gaGKSTLl~~Lsg~~-~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~-~~~l~ 250 (654)
++.+.+|+|+|+||||||||+|+|++.. ..+.++|+||.++..+.+.+++ ..+.++||||+.+........+ .....
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g-~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG-ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC-EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 4567789999999999999999999865 3578999999999999998876 5789999999864322111111 22345
Q ss_pred HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccc
Q psy1086 251 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 330 (654)
Q Consensus 251 ~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~ 330 (654)
.+..+|++++|+|++.. ...+.+ +..++ . ....|.++|+||+|+... . .+.+.+..
T Consensus 279 ~~~~aD~il~V~D~s~~---------~s~~~~--~l~~~---~--~~~~piIlV~NK~Dl~~~-~-~~~~~~~~------ 334 (442)
T TIGR00450 279 AIKQADLVIYVLDASQP---------LTKDDF--LIIDL---N--KSKKPFILVLNKIDLKIN-S-LEFFVSSK------ 334 (442)
T ss_pred HHhhCCEEEEEEECCCC---------CChhHH--HHHHH---h--hCCCCEEEEEECccCCCc-c-hhhhhhhc------
Confidence 67788999999998631 111111 11111 1 136799999999998643 1 11111100
Q ss_pred cccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||++ .|++++++.+.+.+..
T Consensus 335 --------------~-~~~~~vSak~--~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 335 --------------V-LNSSNLSAKQ--LKIKALVDLLTQKINA 361 (442)
T ss_pred --------------C-CceEEEEEec--CCHHHHHHHHHHHHHH
Confidence 0 1467899986 4888888777765543
No 332
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.37 E-value=2.8e-12 Score=121.92 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=98.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|++||.+|||||||++.+++........+..+.......+..+.. ..+.+||+||... +..........+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccC
Confidence 47999999999999999999987654444443344444444544432 2688999999432 222233445567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+++++|+|+.+ ...+..+..+..++..+. ....|.+++.||+|+...... .+.........
T Consensus 78 d~il~v~d~~~---------~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~------- 139 (168)
T cd01866 78 AGALLVYDITR---------RETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEH------- 139 (168)
T ss_pred CEEEEEEECCC---------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-------
Confidence 88889999863 123333333333332221 135789999999998743221 22222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++++||..+ .++++++..+.+.+
T Consensus 140 ----------~-~~~~e~Sa~~~-~~i~~~~~~~~~~~ 165 (168)
T cd01866 140 ----------G-LIFMETSAKTA-SNVEEAFINTAKEI 165 (168)
T ss_pred ----------C-CEEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 1 25899999999 99999998887654
No 333
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.36 E-value=4e-12 Score=119.92 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=96.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+.+... ...++.|+.......+.+++. ..+.++|+||..+. .......+..++
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~ 75 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF-------SAMREQYMRTGE 75 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-------hHHHHHHHhhCC
Confidence 799999999999999999987543 445555544333333444432 25788999996432 112233455678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+++. ..+..+.....++..... ....|.++++||+|+....... +...+....
T Consensus 76 ~~ilv~d~~~~---------~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~--------- 136 (164)
T cd04145 76 GFLLVFSVTDR---------GSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQRKVSREEGQELARK--------- 136 (164)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccceecHHHHHHHHHH---------
Confidence 88888888631 223333333333332211 1467999999999986543211 122222111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ ..++++||+++ .|++++++.+.+.+
T Consensus 137 --------~~-~~~~~~Sa~~~-~~i~~l~~~l~~~~ 163 (164)
T cd04145 137 --------LK-IPYIETSAKDR-LNVDKAFHDLVRVI 163 (164)
T ss_pred --------cC-CcEEEeeCCCC-CCHHHHHHHHHHhh
Confidence 01 25799999999 99999998887543
No 334
>KOG1490|consensus
Probab=99.36 E-value=1.7e-12 Score=135.74 Aligned_cols=167 Identities=23% Similarity=0.350 Sum_probs=120.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhH-H---HHHHh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGH-Q---FLRHV 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~-~---~~~~~ 500 (654)
..+.++|.++|||||++|.+......+.++++||.....+.+.+.-. .++++||||+.+......+... + .+.++
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYl-rwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYL-RWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhee-eeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999988764 7999999999886544433221 1 23445
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+. +++++.|+| +.|-.++....+.++...+-..|+|+|||+||+|+.....+.++-.+.+..+.+
T Consensus 248 ra--aVLYfmDLS----------e~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~--- 312 (620)
T KOG1490|consen 248 RS--AVLYFMDLS----------EMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIID--- 312 (620)
T ss_pred hh--hheeeeech----------hhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHh---
Confidence 54 478999997 233334444444444445566799999999999987654444333333333322
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
...++++.+|-.+.+ ||-++....++.
T Consensus 313 -----------~~~v~v~~tS~~~ee-gVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 313 -----------DGNVKVVQTSCVQEE-GVMDVRTTACEA 339 (620)
T ss_pred -----------ccCceEEEecccchh-ceeeHHHHHHHH
Confidence 123578999999998 999887776653
No 335
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.36 E-value=1.5e-12 Score=125.29 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=89.7
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccC--CCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc------ccchHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRAR--PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN------LGMGHQ 247 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~--~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~------~~l~~~ 247 (654)
..+|+++|.+|+|||||++.|.+.. +.+.+.+++|..+....+ + ..+.++|+||+....... ..+...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N--DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C--CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 4579999999999999999999864 445667777776654333 3 269999999975432111 011122
Q ss_pred HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH---HHHHHHH
Q psy1086 248 FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY---DGIRDTL 324 (654)
Q Consensus 248 ~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~---~~l~~~~ 324 (654)
+++....++.+++|+|.... ...... ++..+... ...|.++++||+|+....+.. +++++.+
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~---------~~~~~~-----~~~~~~~~-~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l 158 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHP---------LKELDL-----EMLEWLRE-RGIPVLIVLTKADKLKKSELNKQLKKIKKAL 158 (179)
T ss_pred HHHhChhhcEEEEEecCCCC---------CCHHHH-----HHHHHHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 33333445678888887631 011111 11111111 468999999999997543322 2233332
Q ss_pred hccccccccCCCccchhhhcccceEEEeecccCccch
Q psy1086 325 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDV 361 (654)
Q Consensus 325 ~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i 361 (654)
... .....++++||+++ +|+
T Consensus 159 ~~~----------------~~~~~v~~~Sa~~g-~gi 178 (179)
T TIGR03598 159 KKD----------------ADDPSVQLFSSLKK-TGI 178 (179)
T ss_pred hhc----------------cCCCceEEEECCCC-CCC
Confidence 210 00026899999999 886
No 336
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.36 E-value=4.1e-12 Score=123.35 Aligned_cols=168 Identities=22% Similarity=0.249 Sum_probs=101.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|++|||||||++.+++..+. . ...|..+..+.+.+++ ..+.++|+||.... ...+..++..++
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~--~-~~~T~~~~~~~i~~~~-~~~~l~D~~G~~~~-------~~~~~~~~~~ad 88 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA--Q-HVPTLHPTSEELTIGN-IKFKTFDLGGHEQA-------RRLWKDYFPEVD 88 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccCcceEEEEECC-EEEEEEECCCCHHH-------HHHHHHHhccCC
Confidence 46899999999999999999986542 2 2336677888888876 57899999995321 122334456677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|..+. ..+......+..+.. .....|.++++||+|+.... ..+.+.+.+..........
T Consensus 89 ~iilV~D~~~~------------~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 155 (190)
T cd00879 89 GIVFLVDAADP------------ERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV-SEEELRQALGLYGTTTGKG 155 (190)
T ss_pred EEEEEEECCcH------------HHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc-CHHHHHHHhCccccccccc
Confidence 78888888631 112212222222211 23568999999999986422 2234444433211000000
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
...... ......++++||+++ +|++++++++.+.
T Consensus 156 -~~~~~~-~~~~~~~~~~Sa~~~-~gv~e~~~~l~~~ 189 (190)
T cd00879 156 -VSLKVS-GIRPIEVFMCSVVKR-QGYGEAFRWLSQY 189 (190)
T ss_pred -cccccc-CceeEEEEEeEecCC-CChHHHHHHHHhh
Confidence 000000 011125899999999 9999999998754
No 337
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.36 E-value=4.2e-12 Score=119.57 Aligned_cols=156 Identities=20% Similarity=0.232 Sum_probs=93.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|.+|||||||++.+++.......|.. |.......+...+ ..+.++|+||..... ..+..++..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~-t~g~~~~~~~~~~-~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~ 71 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVP-TVGFNVESFEKGN-LSFTAFDMSGQGKYR-------GLWEHYYKNIQG 71 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecC-ccccceEEEEECC-EEEEEEECCCCHhhH-------HHHHHHHccCCE
Confidence 4899999999999999999986443333332 2223333344333 478999999964321 122334567888
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hh--cCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NL--LEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l--~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
+++|+|.+.. ..+.....++..+.. .+ ...|.++++||+|+..... .+.+.+.+.. ..
T Consensus 72 ii~v~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~-~~---- 133 (162)
T cd04157 72 IIFVIDSSDR------------LRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGL-EN---- 133 (162)
T ss_pred EEEEEeCCcH------------HHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCC-cc----
Confidence 8999998631 122222222222211 11 3689999999999865422 2222222211 00
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
.. . ....++++||+++ .|+++++++|.
T Consensus 134 ~~-------~-~~~~~~~~Sa~~g-~gv~~~~~~l~ 160 (162)
T cd04157 134 IK-------D-KPWHIFASNALTG-EGLDEGVQWLQ 160 (162)
T ss_pred cc-------C-ceEEEEEeeCCCC-CchHHHHHHHh
Confidence 00 0 0025789999999 99999998875
No 338
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=5e-12 Score=125.12 Aligned_cols=143 Identities=23% Similarity=0.250 Sum_probs=97.8
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------cEEEEecCcccccc
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------KMSVADLPGLIEGA 238 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------~~~i~D~PGl~~~~ 238 (654)
-..+|+|++..|+-++||||||||||||+++|.| -+.|..|.+.+.+.. ...+..+|+.....
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG-----------ll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d 87 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILG-----------LLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD 87 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC-----------CCcCCcceEEEccccccccccCCeEEEcCcccccC
Confidence 3457777777777899999999999999999999 477888888765421 24677777743211
Q ss_pred cccccchHH-----------HHH-----HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCccee
Q psy1086 239 HRNLGMGHQ-----------FLR-----HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 302 (654)
Q Consensus 239 ~~~~~l~~~-----------~l~-----~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~i 302 (654)
..-.-...+ +++ ..+..+-++.-+.+. +...+++..+|+++.++..++++|+.+|.+
T Consensus 88 ~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-------~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 88 RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-------DLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-------hhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 100000001 111 112333444444443 345788899999999999999999999999
Q ss_pred Eee----cccCccchHhHHHHHHHHHh
Q psy1086 303 LLV----NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 303 lvl----NK~D~~~~~~~~~~l~~~~~ 325 (654)
+++ +-+|.......++.+.+..+
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 78898777776666655544
No 339
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.36 E-value=2.4e-12 Score=133.12 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHh
Q psy1086 246 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 246 ~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~ 325 (654)
+++.+.++.+|++++|+|+.... ..+. .++..+ +..+|.++|+||+|+..... .+.+.+.++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~-----~~~~---------~~l~~~---~~~kp~iiVlNK~DL~~~~~-~~~~~~~~~ 77 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPL-----SSEN---------PMIDKI---IGNKPRLLILNKSDLADPEV-TKKWIEYFE 77 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCC-----CCCC---------hhHHHH---hCCCCEEEEEEchhcCCHHH-HHHHHHHHH
Confidence 45677888999999999986321 0011 111111 13689999999999864422 222222222
Q ss_pred ccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCC
Q psy1086 326 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQN 405 (654)
Q Consensus 326 ~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 405 (654)
.. + ..++.+||.++ .+++++.+.+.+.++....... ..+ .
T Consensus 78 ~~-----------------~-~~vi~vSa~~~-~gi~~L~~~l~~~l~~~~~~~~--------------~~~-~------ 117 (287)
T PRK09563 78 EQ-----------------G-IKALAINAKKG-QGVKKILKAAKKLLKEKNERRK--------------AKG-M------ 117 (287)
T ss_pred Hc-----------------C-CeEEEEECCCc-ccHHHHHHHHHHHHHHHHhhhh--------------hcc-c------
Confidence 10 0 25789999999 9999999988877643211100 000 0
Q ss_pred CcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCC
Q psy1086 406 GWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIE 484 (654)
Q Consensus 406 ~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~ 484 (654)
.....+++++|.+|+||||++|.+.+... ..+..|++|...+ .+.++. .+.++||||+..
T Consensus 118 ---------------~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~--~~~l~DtPGi~~ 178 (287)
T PRK09563 118 ---------------RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLGK--GLELLDTPGILW 178 (287)
T ss_pred ---------------CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeCC--cEEEEECCCcCC
Confidence 01235899999999999999999999775 4567899988875 344443 589999999976
Q ss_pred CCc
Q psy1086 485 GAH 487 (654)
Q Consensus 485 ~~~ 487 (654)
...
T Consensus 179 ~~~ 181 (287)
T PRK09563 179 PKL 181 (287)
T ss_pred CCC
Confidence 543
No 340
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.35 E-value=7e-12 Score=119.39 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=99.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|.+|||||||++++++... .. +.+|..+....+.+.+ ..+.++|+||.... ...+..+...++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~-~~i~l~Dt~G~~~~-------~~~~~~~~~~ad~ 69 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKN-LKFTIWDVGGKHKL-------RPLWKHYYLNTQA 69 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECC-EEEEEEECCCChhc-------chHHHHHhccCCE
Confidence 589999999999999999998532 22 3345555555666654 47899999996432 1223345567888
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|.+.. ..+.....++..+.. .+...|.+++.||+|+.... ..+.+.+.+.. ....
T Consensus 70 ii~V~D~s~~------------~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~-~~~~---- 131 (169)
T cd04158 70 VVFVVDSSHR------------DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL-SVEEMTELLSL-HKLC---- 131 (169)
T ss_pred EEEEEeCCcH------------HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC-CHHHHHHHhCC-cccc----
Confidence 9999998731 122223333333322 23457899999999986431 12233333211 1000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
......++++||+++ .|++++++++.+.+.
T Consensus 132 -------~~~~~~~~~~Sa~~g-~gv~~~f~~l~~~~~ 161 (169)
T cd04158 132 -------CGRSWYIQGCDARSG-MGLYEGLDWLSRQLV 161 (169)
T ss_pred -------CCCcEEEEeCcCCCC-CCHHHHHHHHHHHHh
Confidence 000125778999999 999999999876544
No 341
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.35 E-value=4.7e-12 Score=119.02 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=95.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+|+|.+|+|||||++.++.... . .+ ..|.......+.+.+ ..+.++|+||... +...+..++..+++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-~-~~-~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~ 69 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-V-TT-IPTIGFNVETVTYKN-LKFQVWDLGGQTS-------IRPYWRCYYSNTDA 69 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-c-Cc-CCccCcCeEEEEECC-EEEEEEECCCCHH-------HHHHHHHHhcCCCE
Confidence 589999999999999999976432 1 22 234445555565544 5789999999643 22233455677889
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|++.. ..+.....++..+. ..+...|.++++||+|+..... ..++.+.+.. .. ..
T Consensus 70 ii~v~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~-~~----~~ 131 (158)
T cd04151 70 IIYVVDSTDR------------DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS-EAEISEKLGL-SE----LK 131 (158)
T ss_pred EEEEEECCCH------------HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCc-cc----cC
Confidence 9999998631 11221222222221 1235789999999999864321 2222222211 00 00
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
. ...+++++||+++ .|++++++++.
T Consensus 132 -------~-~~~~~~~~Sa~~~-~gi~~l~~~l~ 156 (158)
T cd04151 132 -------D-RTWSIFKTSAIKG-EGLDEGMDWLV 156 (158)
T ss_pred -------C-CcEEEEEeeccCC-CCHHHHHHHHh
Confidence 0 0126899999999 99999998875
No 342
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.35 E-value=7.7e-12 Score=118.49 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=99.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeC--CCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD--DFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~--~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.|+++|.+|||||||+++|++........+.+|.......+... ....+.++||||.... ..........+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~ 74 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGASLT 74 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHHhhc
Confidence 58999999999999999999876655555666666655566554 2357999999996421 11223345678
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
|++++|+|.+.. ... ..+... . +.. ....|.++++||+|+..... +.+...+........
T Consensus 75 d~il~v~d~~~~------~~~---~~~~~~-~----~~~-~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~--- 134 (168)
T cd01887 75 DIAILVVAADDG------VMP---QTIEAI-K----LAK-AANVPFIVALNKIDKPNANP--ERVKNELSELGLQGE--- 134 (168)
T ss_pred CEEEEEEECCCC------ccH---HHHHHH-H----HHH-HcCCCEEEEEEceecccccH--HHHHHHHHHhhcccc---
Confidence 888999998631 001 111111 1 111 15789999999999864321 111111111100000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
. ......+++++||.++ .+++++++++.+..
T Consensus 135 ~-----~~~~~~~~~~~Sa~~~-~gi~~l~~~l~~~~ 165 (168)
T cd01887 135 D-----EWGGDVQIVPTSAKTG-EGIDDLLEAILLLA 165 (168)
T ss_pred c-----cccCcCcEEEeecccC-CCHHHHHHHHHHhh
Confidence 0 0001136899999999 99999999987653
No 343
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.35 E-value=1.3e-11 Score=134.89 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=99.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-------------------------------cCCCcccccceeEEEEeCCCce
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-------------------------------ASYPFTTIKPNVGVITFDDFRK 473 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~v~~~~~~~ 473 (654)
.+|+++|+.++|||||+.+|+.....+ .-..++|.+.....+.+++ ..
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~-~~ 86 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-YY 86 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC-eE
Confidence 479999999999999999987621110 0145677777666777766 48
Q ss_pred EEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcc--cCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EE
Q psy1086 474 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQ--LGLKHPKRSCVETVLLLNKELELYKMNLLEKP-II 550 (654)
Q Consensus 474 ~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~i 550 (654)
+.++|||| +..|...+...+..||++++|+|++... -++.. ..++.+.+.. + ...++| +|
T Consensus 87 i~lIDtPG-------h~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~-~~qT~eh~~~----~-----~~~gi~~ii 149 (446)
T PTZ00141 87 FTIIDAPG-------HRDFIKNMITGTSQADVAILVVASTAGEFEAGISK-DGQTREHALL----A-----FTLGVKQMI 149 (446)
T ss_pred EEEEECCC-------hHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCC-CccHHHHHHH----H-----HHcCCCeEE
Confidence 99999999 4446667778889999999999998431 11111 1122222211 1 123565 67
Q ss_pred EEEeCCCccC---hHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHH
Q psy1086 551 LLVNKMDVEG---AQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVND 611 (654)
Q Consensus 551 iv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~e 611 (654)
++.||||... ++...+++.+ ++.+.+...+ |. ...++++|+||.+|. |+.+
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~---~i~~~l~~~g--~~----~~~~~~ipiSa~~g~-ni~~ 203 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKK---EVSAYLKKVG--YN----PEKVPFIPISGWQGD-NMIE 203 (446)
T ss_pred EEEEccccccchhhHHHHHHHHH---HHHHHHHhcC--CC----cccceEEEeecccCC-Cccc
Confidence 8999999532 2222333332 2333332211 10 124689999999999 9975
No 344
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.34 E-value=5e-12 Score=119.17 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=96.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+.... ....|+.|+.......+..++. ..+.+||+||...... + .......++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~~ 74 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----M---RDLYIKNGQ 74 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch----H---HHHHhhcCC
Confidence 68999999999999999998643 2344555544333344555442 2467899999643221 1 122345577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++|+|.+. ...++.+..+..++..+.. ....|.++++||+|+.............+..
T Consensus 75 ~~ilv~d~~~---------~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------- 134 (163)
T cd04136 75 GFVLVYSITS---------QSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREEGQALAR---------- 134 (163)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHHHHHHHH----------
Confidence 7788888763 1233444444444433321 2468999999999986432211111111111
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
..+ .+++++||+++ .++.++++.+.+.
T Consensus 135 ------~~~-~~~~~~Sa~~~-~~v~~l~~~l~~~ 161 (163)
T cd04136 135 ------QWG-CPFYETSAKSK-INVDEVFADLVRQ 161 (163)
T ss_pred ------HcC-CeEEEecCCCC-CCHHHHHHHHHHh
Confidence 001 26899999999 9999999988654
No 345
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.34 E-value=6.6e-12 Score=121.35 Aligned_cols=163 Identities=20% Similarity=0.202 Sum_probs=103.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|++|||||||++.+++.... .+ .+|..+..+.+.+.+ ..+.++|+||.... ...+..++..++
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~-------~~~~~~~~~~ad 86 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIGN-IKFTTFDLGGHQQA-------RRLWKDYFPEVN 86 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEECC-EEEEEEECCCCHHH-------HHHHHHHhCCCC
Confidence 57999999999999999999986432 22 346677777777765 57899999996421 122344566788
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|+++. ..+.....++..+. ..+...|.++++||+|+.... ..+++.+.+.... .....
T Consensus 87 ~ii~vvD~~~~------------~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~l~l~~-~~~~~ 152 (184)
T smart00178 87 GIVYLVDAYDK------------ERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA-SEDELRYALGLTN-TTGSK 152 (184)
T ss_pred EEEEEEECCcH------------HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC-CHHHHHHHcCCCc-ccccc
Confidence 89999998631 11222222222222 234678999999999986432 2334444443111 00000
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
. ....+...++++||+++ .|+++++++|.+
T Consensus 153 ~-----~~~~~~~~i~~~Sa~~~-~g~~~~~~wl~~ 182 (184)
T smart00178 153 G-----KVGVRPLEVFMCSVVRR-MGYGEGFKWLSQ 182 (184)
T ss_pred c-----ccCCceeEEEEeecccC-CChHHHHHHHHh
Confidence 0 00112247999999999 999999999864
No 346
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.34 E-value=1.6e-11 Score=134.08 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=99.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC-------------------------c------cCCCcccccceeEEEEeCCCce
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK-------------------------I------ASYPFTTIKPNVGVITFDDFRK 473 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~-------------------------~------~~~~~~t~~~~~~~v~~~~~~~ 473 (654)
.+++++|+.++|||||+-+|+..... . .-..++|.+.....+.+++ ..
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~-~~ 86 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK-YY 86 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC-EE
Confidence 57999999999999999888642110 0 0144667776666666665 58
Q ss_pred EEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcc--cCCCCCccchHHHHHHHHHHHHHhhcccCCC-CEE
Q psy1086 474 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQ--LGLKHPKRSCVETVLLLNKELELYKMNLLEK-PII 550 (654)
Q Consensus 474 ~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~-p~i 550 (654)
+.++|||| ++.|...+...++.||++++|+|++... .++.. ..++.+.+ ... ...++ ++|
T Consensus 87 i~liDtPG-------h~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~-~~qT~eh~----~~~-----~~~gi~~iI 149 (447)
T PLN00043 87 CTVIDAPG-------HRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK-DGQTREHA----LLA-----FTLGVKQMI 149 (447)
T ss_pred EEEEECCC-------HHHHHHHHHhhhhhccEEEEEEEcccCceecccCC-CchHHHHH----HHH-----HHcCCCcEE
Confidence 99999999 5557777778899999999999998421 01110 01111111 111 12356 568
Q ss_pred EEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHH
Q psy1086 551 LLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVND 611 (654)
Q Consensus 551 iv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~e 611 (654)
|++||+|+.+.......+.+..+++++.+.+.+ |. ...++++|+||++|. ||.+
T Consensus 150 V~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g--~~----~~~~~~ipiSa~~G~-ni~~ 203 (447)
T PLN00043 150 CCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG--YN----PDKIPFVPISGFEGD-NMIE 203 (447)
T ss_pred EEEEcccCCchhhhHHHHHHHHHHHHHHHHHcC--CC----cccceEEEEeccccc-cccc
Confidence 889999986321111222222333433333221 10 123579999999999 9865
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.34 E-value=4.4e-12 Score=121.09 Aligned_cols=159 Identities=20% Similarity=0.228 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHh
Q psy1086 246 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 246 ~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~ 325 (654)
.+....++.+|++++|+|++... ..... + +...+..+|.++|+||+|+...... ..+.+.+.
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~-------~~~~~-------~---i~~~~~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~ 72 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPL-------SSRNP-------L---LEKILGNKPRIIVLNKADLADPKKT-KKWLKYFE 72 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCcc-------CcCCh-------h---hHhHhcCCCEEEEEehhhcCChHHH-HHHHHHHH
Confidence 45677788899999999986311 00000 0 1112246899999999999654322 22222221
Q ss_pred ccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCC
Q psy1086 326 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQN 405 (654)
Q Consensus 326 ~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 405 (654)
.. ...++.+||+++ .+++++.+.+.+.+....... ...
T Consensus 73 ~~------------------~~~vi~iSa~~~-~gi~~L~~~l~~~l~~~~~~~----------------~~~------- 110 (171)
T cd01856 73 SK------------------GEKVLFVNAKSG-KGVKKLLKAAKKLLKDIEKLK----------------AKG------- 110 (171)
T ss_pred hc------------------CCeEEEEECCCc-ccHHHHHHHHHHHHHHHhhhh----------------hcc-------
Confidence 10 125789999999 999999999887764311000 000
Q ss_pred CcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCC
Q psy1086 406 GWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482 (654)
Q Consensus 406 ~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~ 482 (654)
......+++++|.+|+||||++|++.+..+. .+..+++|..... +.++ ..+.+|||||+
T Consensus 111 --------------~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~~--~~~~~iDtpG~ 170 (171)
T cd01856 111 --------------LLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKIS--PGIYLLDTPGI 170 (171)
T ss_pred --------------cCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEec--CCEEEEECCCC
Confidence 0012247999999999999999999987653 3456777776654 3343 36899999996
No 348
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.34 E-value=7.1e-12 Score=116.93 Aligned_cols=156 Identities=24% Similarity=0.283 Sum_probs=95.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+|+|++|||||||+++|++........| |.......+..+. ..+.++|+||... +.......+..++.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 70 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGN-VTLKVWDLGGQPR-------FRSMWERYCRGVNA 70 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECC-EEEEEEECCCCHh-------HHHHHHHHHhcCCE
Confidence 489999999999999999998644332223 3334444555544 5789999999632 12233445667788
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|+... ..+......+..+. ..+...|.++|+||.|+...... ..+.+.... ...
T Consensus 71 ii~v~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~-~~~----- 131 (159)
T cd04159 71 IVYVVDAADR------------TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV-DELIEQMNL-KSI----- 131 (159)
T ss_pred EEEEEECCCH------------HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH-HHHHHHhCc-ccc-----
Confidence 8888888631 12222222222221 12356799999999998754322 222222110 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
.....+++.+|++++ .+++++++++.+
T Consensus 132 -------~~~~~~~~~~Sa~~~-~gi~~l~~~l~~ 158 (159)
T cd04159 132 -------TDREVSCYSISCKEK-TNIDIVLDWLIK 158 (159)
T ss_pred -------cCCceEEEEEEeccC-CChHHHHHHHhh
Confidence 000125789999999 999999988764
No 349
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.34 E-value=5.6e-12 Score=118.86 Aligned_cols=158 Identities=20% Similarity=0.157 Sum_probs=96.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||++.+.+........+..+.....-.+.+++. ..+.++|+||..... ......+..+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR-------SITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhCCCC
Confidence 6899999999999999999987654444444444444444555442 257899999953211 11222334577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh-HHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~~~ 335 (654)
++++++|.... ...+.+..+..++..+.. ...|.+++.||+|+..... ..+...+....
T Consensus 75 ~~ilv~d~~~~---------~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~--------- 134 (164)
T smart00175 75 GALLVYDITNR---------ESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEE--------- 134 (164)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHH---------
Confidence 88888887631 122222222222222221 3689999999999865321 12222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ .+++++||.++ .+++++++.+.+.+
T Consensus 135 --------~~-~~~~e~Sa~~~-~~i~~l~~~i~~~~ 161 (164)
T smart00175 135 --------HG-LPFFETSAKTN-TNVEEAFEELAREI 161 (164)
T ss_pred --------cC-CeEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 11 25899999999 99999999988765
No 350
>PRK04213 GTP-binding protein; Provisional
Probab=99.34 E-value=5.9e-12 Score=123.46 Aligned_cols=175 Identities=26% Similarity=0.356 Sum_probs=97.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccc--cc--cccchHHHHH--
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA--HR--NLGMGHQFLR-- 250 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~--~~--~~~l~~~~l~-- 250 (654)
.+|+++|.+|||||||+++|++........|++|..+.. +.+. .+.+|||||+.... .. ...+...+..
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG---DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec---ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 479999999999999999999987777778888877653 3332 58999999963211 10 0111111111
Q ss_pred --HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH-hHHHHHHHHHhcc
Q psy1086 251 --HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNL 327 (654)
Q Consensus 251 --~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~-~~~~~l~~~~~~l 327 (654)
....++++++|+|...+. .....+... .. .....++..+... ...|.++|+||+|+.... +..+++.+.+...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~-~~-~~~~~~l~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFI-EIIERWEGR-GE-IPIDVEMFDFLRE-LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HhhhhhheEEEEEEeCcccc-ccccccccC-CC-cHHHHHHHHHHHH-cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 223345666677765321 000000000 00 0011122222222 478999999999986543 2223333222110
Q ss_pred ccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 328 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
. .+ .. + ...++++||+++ |+++++++|.+.+..
T Consensus 161 ~----~~----~~--~--~~~~~~~SA~~g--gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 161 P----PW----RQ--W--QDIIAPISAKKG--GIEELKEAIRKRLHE 193 (201)
T ss_pred c----cc----cc--c--CCcEEEEecccC--CHHHHHHHHHHhhcC
Confidence 0 00 00 0 024799999998 999999998776543
No 351
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.34 E-value=2.9e-12 Score=124.90 Aligned_cols=160 Identities=18% Similarity=0.237 Sum_probs=94.7
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccC--CCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc------ccchHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRAR--PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN------LGMGHQ 247 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~--~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~------~~l~~~ 247 (654)
..+|+++|.+|||||||+++|++.. +.+.+.+++|....... ++ ..+.++||||+....... ..+...
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VN--DKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cC--CeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4579999999999999999999853 45566777776554432 22 479999999965321110 011122
Q ss_pred HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH---HHHHHHH
Q psy1086 248 FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY---DGIRDTL 324 (654)
Q Consensus 248 ~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~---~~l~~~~ 324 (654)
++++.+..+.+++++|.... . .. ... ++..+.. ....|.++++||+|+....+.. +.+.+.+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~-------~-~~-~~~-----~i~~~l~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l 164 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHP-------L-KE-LDL-----QMIEWLK-EYGIPVLIVLTKADKLKKGERKKQLKKVRKAL 164 (196)
T ss_pred HHHhCccceEEEEEEecCCC-------C-CH-HHH-----HHHHHHH-HcCCcEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 22322233445555555421 0 11 111 1111111 2468889999999987543322 1122222
Q ss_pred hccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 325 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 325 ~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
... ...++++||+++ ++++++.+.|.+++.
T Consensus 165 ~~~------------------~~~~~~~Sa~~~-~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 165 KFG------------------DDEVILFSSLKK-QGIDELRAAIAKWLA 194 (196)
T ss_pred Hhc------------------CCceEEEEcCCC-CCHHHHHHHHHHHhc
Confidence 110 126889999999 999999999887664
No 352
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.34 E-value=6.4e-12 Score=120.29 Aligned_cols=155 Identities=22% Similarity=0.225 Sum_probs=98.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|++|+|||||++.|++.... .. ..|..+....+.+++ ..+.++|+||... +...+..++..++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~l~D~~G~~~-------~~~~~~~~~~~~d 84 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-HT--SPTIGSNVEEIVYKN-IRFLMWDIGGQES-------LRSSWNTYYTNTD 84 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-Cc--CCccccceEEEEECC-eEEEEEECCCCHH-------HHHHHHHHhhcCC
Confidence 47999999999999999999764322 22 235555666666665 5799999999642 2233445667889
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|.+.. ..+.....++..+. ..+...|.++++||+|+..... .+++.+.+... . .
T Consensus 85 ~vi~V~D~s~~------------~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~-~~~i~~~l~~~-~----~ 146 (174)
T cd04153 85 AVILVIDSTDR------------ERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT-PAEISESLGLT-S----I 146 (174)
T ss_pred EEEEEEECCCH------------HHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC-HHHHHHHhCcc-c----c
Confidence 99999998731 12222233333332 1235689999999999865321 22222222110 0 0
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
. ... .+++++||+++ .|+++++++|.
T Consensus 147 ~-------~~~-~~~~~~SA~~g-~gi~e~~~~l~ 172 (174)
T cd04153 147 R-------DHT-WHIQGCCALTG-EGLPEGLDWIA 172 (174)
T ss_pred c-------CCc-eEEEecccCCC-CCHHHHHHHHh
Confidence 0 001 25889999999 99999998875
No 353
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.34 E-value=5e-12 Score=122.10 Aligned_cols=167 Identities=22% Similarity=0.271 Sum_probs=100.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCC----------------CCccccccceEEEEeCCCccEEEEecCccccccccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIAS----------------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN 241 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~----------------~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~ 241 (654)
+|+++|.+|||||||+++|++....... ...+|.......+.+.. ..+.++|+||...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD-RRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC-EEEEEEeCCCcHH-----
Confidence 4899999999999999999986544321 12344555555555554 4789999999643
Q ss_pred ccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HH
Q psy1086 242 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YD 318 (654)
Q Consensus 242 ~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~ 318 (654)
+...+...+..++.+++|+|.... . .. . ..+...+... ...|.++++||+|+...... .+
T Consensus 75 --~~~~~~~~~~~~d~~i~v~d~~~~-------~-~~-~-----~~~~~~~~~~-~~~~i~iv~nK~D~~~~~~~~~~~~ 137 (189)
T cd00881 75 --FSSEVIRGLSVSDGAILVVDANEG-------V-QP-Q-----TREHLRIARE-GGLPIIVAINKIDRVGEEDLEEVLR 137 (189)
T ss_pred --HHHHHHHHHHhcCEEEEEEECCCC-------C-cH-H-----HHHHHHHHHH-CCCCeEEEEECCCCcchhcHHHHHH
Confidence 223345556678888999998631 0 00 1 1111112221 57899999999999763322 22
Q ss_pred HHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 319 GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 319 ~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+.+.+....... .+..........+++++||+++ .|++++++.+...+
T Consensus 138 ~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~Sa~~g-~gi~~l~~~l~~~l 186 (189)
T cd00881 138 EIKELLGLIGFIS----TKEEGTRNGLLVPIVPGSALTG-IGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHccccccc----hhhhhcccCCcceEEEEecccC-cCHHHHHHHHHhhC
Confidence 2333322211000 0000000011247899999999 99999999987665
No 354
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.34 E-value=4e-12 Score=126.45 Aligned_cols=163 Identities=19% Similarity=0.188 Sum_probs=100.2
Q ss_pred EEEEeccCcCCCCCCCCcccccceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCC-----------CCCCCcccc
Q psy1086 143 SIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-----------IASYPFTTI 211 (654)
Q Consensus 143 ~~~~a~Gg~gg~gn~~f~g~~Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~-----------i~~~~~tTl 211 (654)
.+.+.+|++--..|.+| ++..|+-++|+|||||||||||++|+|..+. +.+++...+
T Consensus 7 ~ls~~y~~~~il~~ls~------------~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 7 NLSFGYGGKPILDDLSF------------SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred EEEEEECCeeEEecceE------------EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHH
Confidence 45666666555555554 4444556999999999999999999994321 223344444
Q ss_pred ccceEEEEeCCC--ccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHH
Q psy1086 212 KPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL 289 (654)
Q Consensus 212 ~p~~G~v~~~~~--~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el 289 (654)
....+++.+... ..+++.|.--+-..++.+. +...-.+..+..+..+..++.. +...+.+.++|++++++
T Consensus 75 Ak~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~-~~~~~~~D~~~v~~aL~~~~~~-------~la~r~~~~LSGGerQr 146 (258)
T COG1120 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL-FGRPSKEDEEIVEEALELLGLE-------HLADRPVDELSGGERQR 146 (258)
T ss_pred hhhEEEeccCCCCCCCcEEeehHhhcCCccccc-ccCCCHhHHHHHHHHHHHhCcH-------HHhcCcccccChhHHHH
Confidence 445555554321 1345555543333332221 1100001111222233444433 33466789999999999
Q ss_pred HHHhHhhcCcceeEee----cccCccchHhHHHHHHHHHh
Q psy1086 290 ELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 290 ~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~~ 325 (654)
..++++|++.|.++++ |.+|+.+..+.++.+++...
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 89999888877777766553
No 355
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.33 E-value=5.4e-12 Score=119.60 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=93.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+++........|..+.....-.+..++ ...+.+||+||.... ..........++
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~-------~~~~~~~~~~~~ 75 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY-------RTITTAYYRGAM 75 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHccCCc
Confidence 689999999999999999998654332222111111111232222 135889999996422 112234455677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|.+.. ..++.+..+..++..+. ....|.+++.||+|+...... .+...+....
T Consensus 76 ~~l~v~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--------- 135 (165)
T cd01865 76 GFILMYDITNE---------ESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDERVVSSERGRQLADQ--------- 135 (165)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCcccccCHHHHHHHHHH---------
Confidence 88888888631 22333333333332221 135789999999998653321 1222221111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ .+++.+||+++ .|++++++.+.+.+
T Consensus 136 --------~~-~~~~~~Sa~~~-~gv~~l~~~l~~~~ 162 (165)
T cd01865 136 --------LG-FEFFEASAKEN-INVKQVFERLVDII 162 (165)
T ss_pred --------cC-CEEEEEECCCC-CCHHHHHHHHHHHH
Confidence 01 15899999999 99999999987654
No 356
>KOG0062|consensus
Probab=99.33 E-value=2.6e-12 Score=135.33 Aligned_cols=146 Identities=21% Similarity=0.178 Sum_probs=89.6
Q ss_pred cEEEEeccCcCCCCCCCCcccccceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeC
Q psy1086 142 DSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 221 (654)
Q Consensus 142 ~~~~~a~Gg~gg~gn~~f~g~~Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~ 221 (654)
..+.+|+||+-.+.++ +|.|..|.|.||||+||+||||||++|+..... ..| ..
T Consensus 84 ~~fdLa~G~k~LL~~a------------~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~--~f~------ve------ 137 (582)
T KOG0062|consen 84 DNFDLAYGGKILLNKA------------NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVS--GFH------VE------ 137 (582)
T ss_pred eeeeeeecchhhhcCC------------ceeeecccccceeCCCCCcHHHHHHHHHhcCcC--ccC------ch------
Confidence 3677888888777543 467777889999999999999999999973221 111 00
Q ss_pred CCccEEEEecCcccccccccccchHHHH-------H--HHHHHHH-HHHhhcccCcccCCCCCccChHHHHHHHHHHHHH
Q psy1086 222 DFRKMSVADLPGLIEGAHRNLGMGHQFL-------R--HVERTKL-IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELEL 291 (654)
Q Consensus 222 ~~~~~~i~D~PGl~~~~~~~~~l~~~~l-------~--~i~~~~~-il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~ 291 (654)
..+.-.|+|-+......+. ....|+ . ..+.... +++=+..+ .+.+..|+.++|++++.+..
T Consensus 138 --qE~~g~~t~~~~~~l~~D~-~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt------~emq~~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 138 --QEVRGDDTEALQSVLESDT-ERLDFLAEEKELLAGLTLEEIYDKILAGLGFT------PEMQLQPTKSLSGGWRMRLA 208 (582)
T ss_pred --hheeccchHHHhhhhhccH-HHHHHHHhhhhhhccchHHHHHHHHHHhCCCC------HHHHhccccccCcchhhHHH
Confidence 0111222222211110000 000111 0 0111111 22222222 23346788999999999999
Q ss_pred HhHhhcCcceeEee----cccCccchHhHHHHHHH
Q psy1086 292 YKMNLLEKPIILLV----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 292 ~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~ 322 (654)
++++++.+|+++++ |++|.....|+...+..
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t 243 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT 243 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh
Confidence 99999999999999 99999888776666544
No 357
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.33 E-value=5.6e-12 Score=125.06 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=97.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCC-CccccccceEEEEeCC--CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASY-PFTTIKPNVGVITFDD--FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~-~~tTl~p~~G~v~~~~--~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|++||.+|||||||++.+.+... ...| |..+.+...-.+.+++ ...+.+||+||...+. ......+..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~ 73 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYIYG 73 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHhhc
Confidence 589999999999999999987543 2333 3333344344455543 2357899999953211 112233567
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccchHhHH-HHHHHHHhccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIH 332 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~ 332 (654)
+|.+++|+|++.. ..++.+..+..++..+... ....|.++|.||+|+....... +...+.....
T Consensus 74 ad~iilV~D~t~~---------~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~----- 139 (215)
T cd04109 74 AHAVFLVYDVTNS---------QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN----- 139 (215)
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc-----
Confidence 8899999998742 2334443333444333221 1234678899999996432211 1222221110
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ...+.+||+++ .+++++++.+.+.+..
T Consensus 140 ------------~-~~~~~iSAktg-~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 140 ------------G-MESCLVSAKTG-DRVNLLFQQLAAELLG 167 (215)
T ss_pred ------------C-CEEEEEECCCC-CCHHHHHHHHHHHHHh
Confidence 1 15788999999 9999999998876543
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.33 E-value=4.3e-12 Score=130.56 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHh
Q psy1086 246 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 246 ~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~ 325 (654)
+++.+.++.+|++++|+|+.... ..+. .++..+ +..+|.++|+||+|+..... ...+.+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~-----~~~~---------~~i~~~---l~~kp~IiVlNK~DL~~~~~-~~~~~~~~~ 74 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPL-----SSRN---------PMIDEI---RGNKPRLIVLNKADLADPAV-TKQWLKYFE 74 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCC-----CCCC---------hhHHHH---HCCCCEEEEEEccccCCHHH-HHHHHHHHH
Confidence 45677788899999999986311 0011 011111 13689999999999864432 222222222
Q ss_pred ccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCC
Q psy1086 326 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQN 405 (654)
Q Consensus 326 ~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 405 (654)
.. + ..++.+||.++ .++++|.+.+.+.++....... ..+.
T Consensus 75 ~~-----------------~-~~vi~iSa~~~-~gi~~L~~~i~~~~~~~~~~~~--------------~~~~------- 114 (276)
T TIGR03596 75 EK-----------------G-IKALAINAKKG-KGVKKIIKAAKKLLKEKNEKLK--------------AKGL------- 114 (276)
T ss_pred Hc-----------------C-CeEEEEECCCc-ccHHHHHHHHHHHHHHhhhhhh--------------hccC-------
Confidence 10 0 25789999999 9999999988877643211000 0000
Q ss_pred CcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCC
Q psy1086 406 GWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIE 484 (654)
Q Consensus 406 ~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~ 484 (654)
.....+++++|.+|+||||++|++.+... ..+..|++|...+ .+.++. .+.++||||+..
T Consensus 115 ---------------~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~--~~~l~DtPG~~~ 175 (276)
T TIGR03596 115 ---------------KNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLSD--GLELLDTPGILW 175 (276)
T ss_pred ---------------CCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeCC--CEEEEECCCccc
Confidence 01235899999999999999999998764 4466888888765 344543 589999999865
Q ss_pred CC
Q psy1086 485 GA 486 (654)
Q Consensus 485 ~~ 486 (654)
..
T Consensus 176 ~~ 177 (276)
T TIGR03596 176 PK 177 (276)
T ss_pred CC
Confidence 54
No 359
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.33 E-value=6.2e-12 Score=118.27 Aligned_cols=157 Identities=27% Similarity=0.336 Sum_probs=94.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|++|||||||++.+.+.... ..+| |.......+.......+.++|+||... +...+..++..++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEK-------MRTVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHh-------HHHHHHHHhccCCE
Confidence 5899999999999999999986432 2222 333334455554445789999999632 22233445667888
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|.+.. ..+.....++..+. ..+...|.++++||+|+..... .+++...+.. . .+.
T Consensus 71 iv~v~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~-~----~~~ 132 (160)
T cd04156 71 LVYVVDSSDE------------ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT-AEEITRRFKL-K----KYC 132 (160)
T ss_pred EEEEEECCcH------------HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC-HHHHHHHcCC-c----ccC
Confidence 8999998631 12222222222221 1235789999999999864321 1222222210 0 010
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
.. .+ .+++++||+++ +|+++++++|.+
T Consensus 133 ~~------~~-~~~~~~Sa~~~-~gv~~~~~~i~~ 159 (160)
T cd04156 133 SD------RD-WYVQPCSAVTG-EGLAEAFRKLAS 159 (160)
T ss_pred CC------Cc-EEEEecccccC-CChHHHHHHHhc
Confidence 00 01 25889999999 999999988753
No 360
>KOG1490|consensus
Probab=99.33 E-value=3.2e-12 Score=133.64 Aligned_cols=168 Identities=22% Similarity=0.326 Sum_probs=117.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchH----HHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGH----QFLRHV 252 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~----~~l~~i 252 (654)
..+.|+|.||+||||++|.++.+.+.+.+|+|||..-.+|.+.+.- .++.+.||||+.+...++..... ..+.|+
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY-lrwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY-LRWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe-eeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 3688999999999999999999999999999999999999998865 57999999999887665543322 234444
Q ss_pred HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccc
Q psy1086 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 253 ~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~ 332 (654)
. .+++|++|+++.. -.++..-.+-...+.+.+.++|.++|+||+|+...+.+-++-++.++.+...
T Consensus 248 r--aaVLYfmDLSe~C----------GySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-- 313 (620)
T KOG1490|consen 248 R--SAVLYFMDLSEMC----------GYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-- 313 (620)
T ss_pred h--hhheeeeechhhh----------CCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc--
Confidence 3 3678899998531 1111111122233445678999999999999987665444433333332111
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+..+++.+|..+. +|+-++...-.+.+
T Consensus 314 ------------~~v~v~~tS~~~e-egVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 314 ------------GNVKVVQTSCVQE-EGVMDVRTTACEAL 340 (620)
T ss_pred ------------cCceEEEecccch-hceeeHHHHHHHHH
Confidence 1136889999998 88887766554433
No 361
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=4.7e-12 Score=120.23 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=96.9
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHH
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 253 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~ 253 (654)
...+|+++|++|||||||++.+++........+..+.......+.+.+. ..+.++|+||.... .......+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~ 78 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF-------RSITQSYYR 78 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhc
Confidence 4568999999999999999999864332222232233344444555542 24788999995322 112233455
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
.++.+++++|.+.. .....+.....++..+.. ...|.+++.||+|+.........+.+.+....
T Consensus 79 ~~d~~i~v~d~~~~---------~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~----- 142 (169)
T cd04114 79 SANALILTYDITCE---------ESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQ----- 142 (169)
T ss_pred CCCEEEEEEECcCH---------HHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHc-----
Confidence 57788888887631 122233333333332221 25778999999998654433333322222110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
...++.+||+++ .+++++++.+.+.
T Consensus 143 ------------~~~~~~~Sa~~~-~gv~~l~~~i~~~ 167 (169)
T cd04114 143 ------------DMYYLETSAKES-DNVEKLFLDLACR 167 (169)
T ss_pred ------------CCeEEEeeCCCC-CCHHHHHHHHHHH
Confidence 025889999999 9999999998754
No 362
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.33 E-value=7.3e-12 Score=116.76 Aligned_cols=154 Identities=20% Similarity=0.140 Sum_probs=96.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||++.+.+........+.+......-.+..+. ...+.++|+||..... ......+..++
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR-------SITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH-------HHHHHHhcCCC
Confidence 689999999999999999998766555444333333333444332 2357899999963211 12333445578
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh-cCcceeEeecccCcc-chHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL-LEKPIILLVNKMDVE-GAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l-~~~P~ilvlNK~D~~-~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++++|+... +.+......+..+.... ...|.++++||+|+. ......+...+.....
T Consensus 75 ~ii~v~d~~~~------------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------- 135 (159)
T cd00154 75 GAILVYDITNR------------ESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKEN------- 135 (159)
T ss_pred EEEEEEECCCH------------HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHc-------
Confidence 88888888631 22333333333332221 468999999999996 2222333333333220
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
..+++.+||.++ .+++++++.+.
T Consensus 136 -----------~~~~~~~sa~~~-~~i~~~~~~i~ 158 (159)
T cd00154 136 -----------GLLFFETSAKTG-ENVEELFQSLA 158 (159)
T ss_pred -----------CCeEEEEecCCC-CCHHHHHHHHh
Confidence 126899999999 99999998864
No 363
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.33 E-value=2.4e-12 Score=121.12 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=93.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|++|+|||||+++|+|... .....+.+.+... .++|+||...... .+...+...+..+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---------~~~~~~~v~~~~~---~~iDtpG~~~~~~---~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---------LARKTQAVEFNDK---GDIDTPGEYFSHP---RWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---------cCccceEEEECCC---CcccCCccccCCH---HHHHHHHHHHhcCCE
Confidence 699999999999999999998532 1123345555442 2699999753221 123344455678899
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCc
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 337 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~ 337 (654)
+++|+|++... .... .++..+ ...+|.++++||+|+.... .+.+.+++.....
T Consensus 68 il~v~d~~~~~--------s~~~------~~~~~~---~~~~~ii~v~nK~Dl~~~~--~~~~~~~~~~~~~-------- 120 (158)
T PRK15467 68 LIYVHGANDPE--------SRLP------AGLLDI---GVSKRQIAVISKTDMPDAD--VAATRKLLLETGF-------- 120 (158)
T ss_pred EEEEEeCCCcc--------cccC------HHHHhc---cCCCCeEEEEEccccCccc--HHHHHHHHHHcCC--------
Confidence 99999987321 0000 111111 1357889999999986532 2333333332110
Q ss_pred cchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 338 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 338 ~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+++++||+++ ++++++++.+.+.+..
T Consensus 121 --------~~p~~~~Sa~~g-~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 121 --------EEPIFELNSHDP-QSVQQLVDYLASLTKQ 148 (158)
T ss_pred --------CCCEEEEECCCc-cCHHHHHHHHHHhchh
Confidence 026899999999 9999999999877644
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.33 E-value=4.3e-12 Score=117.10 Aligned_cols=135 Identities=28% Similarity=0.410 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh-cCcceeEeecccCccchHhHHHHHHHHH
Q psy1086 246 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL-LEKPIILLVNKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 246 ~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l-~~~P~ilvlNK~D~~~~~~~~~~l~~~~ 324 (654)
.+++++++++|++++|+|+.... .. ...++..+.... ..+|.++|+||+|+..... ...+.+.+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~-----------~~---~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~-~~~~~~~~ 67 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL-----------LF---RPPDLERYVKEVDPRKKNILLLNKADLLTEEQ-RKAWAEYF 67 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc-----------cc---CCHHHHHHHHhccCCCcEEEEEechhcCCHHH-HHHHHHHH
Confidence 56789999999999999986311 00 011222222211 4689999999999865432 22233333
Q ss_pred hccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccC
Q psy1086 325 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQ 404 (654)
Q Consensus 325 ~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 404 (654)
+.. . ..++++||.++ .+
T Consensus 68 ~~~-----------------~-~~ii~iSa~~~-~~-------------------------------------------- 84 (141)
T cd01857 68 KKE-----------------G-IVVVFFSALKE-NA-------------------------------------------- 84 (141)
T ss_pred Hhc-----------------C-CeEEEEEecCC-Cc--------------------------------------------
Confidence 211 0 25788998876 32
Q ss_pred CCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCC
Q psy1086 405 NGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483 (654)
Q Consensus 405 ~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~ 483 (654)
+++++|.+|+||||++|++++.... .+..+++|.+.. .+.+++ .+.+|||||+.
T Consensus 85 ---------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~i~DtpG~~ 139 (141)
T cd01857 85 ---------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFLTP--TITLCDCPGLV 139 (141)
T ss_pred ---------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceE--EEEeCC--CEEEEECCCcC
Confidence 4789999999999999999987663 345677776654 355554 58999999975
No 365
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.33 E-value=9.9e-12 Score=117.39 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=93.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++++.+... ...++.|+.....-.+..++. ..+.++|+||..... .........++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~~ 73 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-------AMRDQYMRTGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-------HHHHHHHhhCC
Confidence 689999999999999999987542 334444443332223334332 246789999964321 11223445667
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~~~ 335 (654)
.+++++|+.. ...++.+......+.... .....|.+++.||+|+....... +...+.....
T Consensus 74 ~~i~v~d~~~---------~~s~~~~~~~~~~i~~~~-~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~-------- 135 (164)
T smart00173 74 GFLLVYSITD---------RQSFEEIKKFREQILRVK-DRDDVPIVLVGNKCDLESERVVSTEEGKELARQW-------- 135 (164)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceEcHHHHHHHHHHc--------
Confidence 7778888763 122233322222222221 11367999999999986532211 1111111111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ .+++++++.+.+.+
T Consensus 136 ---------~-~~~~~~Sa~~~-~~i~~l~~~l~~~~ 161 (164)
T smart00173 136 ---------G-CPFLETSAKER-VNVDEAFYDLVREI 161 (164)
T ss_pred ---------C-CEEEEeecCCC-CCHHHHHHHHHHHH
Confidence 0 26899999999 99999999987654
No 366
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.33 E-value=8.9e-12 Score=118.07 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=96.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|++|+|||||++.+.+........|..+.......+...+. ..+.++|+||.... ..........+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHhCcC
Confidence 36899999999999999999976544332232232333334444431 25789999995321 11222334567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+++. ..+..+..+..++..+. ....|.+++.||.|+...... .+.........
T Consensus 76 ~~ii~v~d~~~~---------~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------- 137 (166)
T cd01869 76 HGIIIVYDVTDQ---------ESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL------- 137 (166)
T ss_pred CEEEEEEECcCH---------HHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHc-------
Confidence 888899988631 23333333333333222 135789999999998654321 12222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ .++++++..+.+.+
T Consensus 138 ----------~-~~~~~~Sa~~~-~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 ----------G-IPFLETSAKNA-TNVEQAFMTMAREI 163 (166)
T ss_pred ----------C-CeEEEEECCCC-cCHHHHHHHHHHHH
Confidence 1 26899999999 99999999887654
No 367
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.32 E-value=1.2e-11 Score=115.07 Aligned_cols=161 Identities=24% Similarity=0.250 Sum_probs=106.7
Q ss_pred EEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHHHH
Q psy1086 181 LVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIA 259 (654)
Q Consensus 181 LVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il 259 (654)
|+|++|||||||++.|++.... +..++.+|..+............+.++|+||+.+...........+......++.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987665 667888888888877776644579999999987665544333344555666778888
Q ss_pred HhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCccc
Q psy1086 260 MIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQ 339 (654)
Q Consensus 260 ~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~ 339 (654)
+++|..... .. .... +... ......|.++++||+|+................ ..
T Consensus 81 ~v~~~~~~~--------~~-~~~~-----~~~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~---------- 134 (163)
T cd00880 81 FVVDADLRA--------DE-EEEK-----LLEL-LRERGKPVLLVLNKIDLLPEEEEEELLELRLLI-LL---------- 134 (163)
T ss_pred EEEeCCCCC--------CH-HHHH-----HHHH-HHhcCCeEEEEEEccccCChhhHHHHHHHHHhh-cc----------
Confidence 888887421 11 1111 1111 112578999999999997654333221100000 00
Q ss_pred hhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 340 PEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 340 ~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.....+++++||.++ .+++++++.+.+.
T Consensus 135 ---~~~~~~~~~~sa~~~-~~v~~l~~~l~~~ 162 (163)
T cd00880 135 ---LLLGLPVIAVSALTG-EGIDELREALIEA 162 (163)
T ss_pred ---cccCCceEEEeeecc-CCHHHHHHHHHhh
Confidence 011136899999999 9999999988653
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.32 E-value=6e-12 Score=118.11 Aligned_cols=127 Identities=23% Similarity=0.315 Sum_probs=84.3
Q ss_pred cCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhH
Q psy1086 297 LEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 376 (654)
Q Consensus 297 ~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~ 376 (654)
..+|.++|+||+|+...+...+.+ ..+... .+..++++||.++ .++++|.+.+.+......
T Consensus 28 ~~~p~IiVlNK~Dl~~~~~~~~~~-~~~~~~-----------------~~~~ii~vSa~~~-~gi~~L~~~i~~~~~~~~ 88 (155)
T cd01849 28 KGKKLILVLNKADLVPKEVLRKWL-AYLRHS-----------------YPTIPFKISATNG-QGIEKKESAFTKQTNSNL 88 (155)
T ss_pred CCCCEEEEEechhcCCHHHHHHHH-HHHHhh-----------------CCceEEEEeccCC-cChhhHHHHHHHHhHHHH
Confidence 468999999999996543322211 111110 0136899999999 999999998876543211
Q ss_pred hHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC-CccCCC
Q psy1086 377 EEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP-KIASYP 455 (654)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~ 455 (654)
.... ... ......+++++|.+|+||||++|.+++... ..+..+
T Consensus 89 ~~~~----------------~~~--------------------~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~ 132 (155)
T cd01849 89 KSYA----------------KDG--------------------KLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP 132 (155)
T ss_pred HHHH----------------hcc--------------------ccccCcEEEEEccCCCCHHHHHHHHHccccccccCCC
Confidence 0000 000 001235899999999999999999998764 345678
Q ss_pred cccccceeEEEEeCCCceEEEEecCCC
Q psy1086 456 FTTIKPNVGVITFDDFRKMSVADLPGL 482 (654)
Q Consensus 456 ~~t~~~~~~~v~~~~~~~~~i~DTpG~ 482 (654)
++|.+..... ++ ..+.++||||+
T Consensus 133 ~~t~~~~~~~--~~--~~~~liDtPG~ 155 (155)
T cd01849 133 GTTTSQQEVK--LD--NKIKLLDTPGI 155 (155)
T ss_pred CcccceEEEE--ec--CCEEEEECCCC
Confidence 8888876543 33 25899999995
No 369
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.32 E-value=8.5e-12 Score=117.97 Aligned_cols=159 Identities=20% Similarity=0.139 Sum_probs=93.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCcc-ccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFT-TIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~t-Tl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|||||||++++++..... .|..| ......-.+..++ ...+.++|+||..... .........+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL-------EVRNEFYKDT 73 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH-------HHHHHHhccC
Confidence 68999999999999999999865322 22221 2222222343332 1357899999963221 1122234567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh---hcCcceeEeecccCccchHh-HHHHHHHHHhcccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN---LLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHI 331 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~---l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i 331 (654)
+.+++|+|.+. ...+..+..+..++..+... ....|.++|.||+|+..... ..+....+....
T Consensus 74 d~~ilv~D~~~---------~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---- 140 (168)
T cd04119 74 QGVLLVYDVTD---------RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK---- 140 (168)
T ss_pred CEEEEEEECCC---------HHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc----
Confidence 78888888863 12233333333333333221 24578999999999863211 122222222110
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++.+||+++ .+++++++.+.+.+
T Consensus 141 -------------~-~~~~~~Sa~~~-~gi~~l~~~l~~~l 166 (168)
T cd04119 141 -------------G-FKYFETSACTG-EGVNEMFQTLFSSI 166 (168)
T ss_pred -------------C-CeEEEEECCCC-CCHHHHHHHHHHHH
Confidence 1 25899999999 99999999987543
No 370
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.32 E-value=6.9e-12 Score=121.98 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=97.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceE-EEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVG-VITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G-~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|||||||++.+.+.......++.|+...... .+.+++. ..+.+||+||..... ......+..+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR-------SVTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH-------HhhHHHccCC
Confidence 689999999999999999988766555565554433333 3344331 257899999953211 1122234456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+++++|+|++. ...++.+..+..++..+.. ...|.++++||.|+...... .++........
T Consensus 75 d~~i~v~D~~~---------~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~------- 136 (191)
T cd04112 75 HALLLLYDITN---------KASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEY------- 136 (191)
T ss_pred CEEEEEEECCC---------HHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHHc-------
Confidence 78888888863 1223333333333332221 35789999999998642211 11111111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++++||+++ .++++++..+.+.+..
T Consensus 137 ----------~-~~~~e~Sa~~~-~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 137 ----------G-VPFMETSAKTG-LNVELAFTAVAKELKH 164 (191)
T ss_pred ----------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 25899999999 9999999999876644
No 371
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.32 E-value=3.4e-12 Score=118.61 Aligned_cols=158 Identities=24% Similarity=0.224 Sum_probs=94.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|||||||++.|.+.......++.++.......+..++. ..+.++|+||...... +.. .....+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~~~---~~~~~~ 74 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA----IRR---LYYRAV 74 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH----HHH---HHHhhh
Confidence 37999999999999999999998755556677777776666666541 3578999999543211 111 112233
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+..+.+.|...... +..... ......+..+.. ...|.++++||+|+.... ........+...
T Consensus 75 ~~~i~~~d~~~~v~----~~~~~~---~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~-------- 136 (161)
T TIGR00231 75 ESSLRVFDIVILVL----DVEEIL---EKQTKEIIHHAE--SNVPIILVGNKIDLRDAK-LKTHVAFLFAKL-------- 136 (161)
T ss_pred hEEEEEEEEeeeeh----hhhhHh---HHHHHHHHHhcc--cCCcEEEEEEcccCCcch-hhHHHHHHHhhc--------
Confidence 44444455432100 001111 112222222222 177999999999997643 222222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
....++++||.++ .++.++++.|.
T Consensus 137 ---------~~~~~~~~sa~~~-~gv~~~~~~l~ 160 (161)
T TIGR00231 137 ---------NGEPIIPLSAETG-KNIDSAFKIVE 160 (161)
T ss_pred ---------cCCceEEeecCCC-CCHHHHHHHhh
Confidence 1135899999999 99999988764
No 372
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.32 E-value=6.9e-12 Score=119.09 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=96.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|++|+|||||++.+++........|..........+.+++. ..+.++|+||.... ......++..+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF-------RTITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHhCCC
Confidence 47999999999999999999986443322232222223334444442 25789999995322 11223445667
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh-HHHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++++|+.. ...+..+..+..++..+. -...|.+++.||.|+..... ..+...+.....
T Consensus 77 d~~i~v~d~~~---------~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------- 138 (167)
T cd01867 77 MGIILVYDITD---------EKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEKRVVSKEEGEALADEY------- 138 (167)
T ss_pred CEEEEEEECcC---------HHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-------
Confidence 88888888863 122233333333332221 13578899999999975322 112222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ .+++++++.+.+.+
T Consensus 139 ----------~-~~~~~~Sa~~~-~~v~~~~~~i~~~~ 164 (167)
T cd01867 139 ----------G-IKFLETSAKAN-INVEEAFFTLAKDI 164 (167)
T ss_pred ----------C-CEEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 1 25799999999 99999999887654
No 373
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.32 E-value=1.2e-11 Score=125.67 Aligned_cols=112 Identities=38% Similarity=0.702 Sum_probs=89.4
Q ss_pred EEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc----------------eEEEEecCCCCCCCcccc
Q psy1086 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGAHRNL 490 (654)
Q Consensus 427 v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~----------------~~~i~DTpG~~~~~~~~~ 490 (654)
|+++|.+|+|||||+|++++......++|++|+++..+.+.+.+.+ .+.++||||+.+..+...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5789999999999999999998878889999999999999988742 489999999998888777
Q ss_pred chhHHHHHHhhcccEEEEEEeCCCcccCCCCC--ccchHHHHHHHHHHHHH
Q psy1086 491 GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHP--KRSCVETVLLLNKELEL 539 (654)
Q Consensus 491 ~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~--~~~~~e~~~~~~~~l~~ 539 (654)
+++..++..++.||++++|+|+.... .+.+. +-++.+.+..+..|+..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~-~~~~~~~~~dp~~d~~~i~~El~~ 130 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDD-DITHVEGSVDPVRDIEIINTELIL 130 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCC-CccCCCCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999999986422 12111 12355555555555543
No 374
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.32 E-value=2.6e-11 Score=131.99 Aligned_cols=164 Identities=22% Similarity=0.273 Sum_probs=100.4
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc---cCCCcccccceeEEE---------------EeCC---------------
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI---ASYPFTTIKPNVGVI---------------TFDD--------------- 470 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~---~~~~~~t~~~~~~~v---------------~~~~--------------- 470 (654)
..+|+++|+-..|||||+..|++..... .-..++|.+.-.... .++.
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 3579999999999999999999753311 123333432211110 0110
Q ss_pred --CceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC
Q psy1086 471 --FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP 548 (654)
Q Consensus 471 --~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p 548 (654)
.+.+.++|||| ++.+...+...+..+|++++|+|++.. ++..+ +.+.+. .+. ...-.|
T Consensus 114 ~~~~~i~~IDtPG-------H~~fi~~m~~g~~~~D~alLVVda~~g--~~~~q---T~ehl~----i~~----~lgi~~ 173 (460)
T PTZ00327 114 TLKRHVSFVDCPG-------HDILMATMLNGAAVMDAALLLIAANES--CPQPQ---TSEHLA----AVE----IMKLKH 173 (460)
T ss_pred cccceEeeeeCCC-------HHHHHHHHHHHHhhCCEEEEEEECCCC--ccchh---hHHHHH----HHH----HcCCCc
Confidence 12689999999 455666777888899999999999831 01111 111111 111 011246
Q ss_pred EEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 549 IILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 549 ~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+|||+||+|+.+.....+. +.++++++..+ ...+.++|++||++|. |+++|++.|.+.+
T Consensus 174 iIVvlNKiDlv~~~~~~~~----~~ei~~~l~~~--------~~~~~~iipVSA~~G~-nI~~Ll~~L~~~l 232 (460)
T PTZ00327 174 IIILQNKIDLVKEAQAQDQ----YEEIRNFVKGT--------IADNAPIIPISAQLKY-NIDVVLEYICTQI 232 (460)
T ss_pred EEEEEecccccCHHHHHHH----HHHHHHHHHhh--------ccCCCeEEEeeCCCCC-CHHHHHHHHHhhC
Confidence 8999999999864332222 22222222111 1235689999999999 9999999888644
No 375
>PRK13351 elongation factor G; Reviewed
Probab=99.32 E-value=3.1e-11 Score=139.80 Aligned_cols=116 Identities=23% Similarity=0.306 Sum_probs=82.4
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc------------cC------CCcccccceeEEEEeCCCceEEEEecCCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI------------AS------YPFTTIKPNVGVITFDDFRKMSVADLPGLIE 484 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~------------~~------~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~ 484 (654)
...+|+++|+.++|||||+++|+.....+ .+ ..++|.......+.|++ .++.+|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~-~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN-HRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC-EEEEEEECCCcHH
Confidence 34689999999999999999998642111 00 23456666666778876 5899999999643
Q ss_pred CCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh
Q psy1086 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 561 (654)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~ 561 (654)
+...+..+++.+|++++|+|++.. ...+....|. .+. ..++|+++|+||+|+...
T Consensus 86 -------f~~~~~~~l~~aD~~ilVvd~~~~---------~~~~~~~~~~-~~~-----~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 -------FTGEVERSLRVLDGAVVVFDAVTG---------VQPQTETVWR-QAD-----RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred -------HHHHHHHHHHhCCEEEEEEeCCCC---------CCHHHHHHHH-HHH-----hcCCCEEEEEECCCCCCC
Confidence 555677889999999999999832 2223333332 221 246899999999998754
No 376
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.32 E-value=2.7e-11 Score=134.58 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=79.5
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCc----------------cC------CCcccccceeEEEEeCCCceEEEEec
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKI----------------AS------YPFTTIKPNVGVITFDDFRKMSVADL 479 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~----------------~~------~~~~t~~~~~~~v~~~~~~~~~i~DT 479 (654)
.+..+|+++|+.++|||||+.+|+.....+ ++ ..+++.......+.+++ .++.+|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~-~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD-CLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC-EEEEEEEC
Confidence 345689999999999999999997422111 00 12344444555677776 48999999
Q ss_pred CCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc
Q psy1086 480 PGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 559 (654)
Q Consensus 480 pG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~ 559 (654)
||+.+ +...+..+++.+|++++|+|++.. +. .....+.... ...++|+++++||+|+.
T Consensus 87 PG~~d-------f~~~~~~~l~~aD~aIlVvDa~~g---v~-------~~t~~l~~~~-----~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 87 PGHED-------FSEDTYRTLTAVDSALMVIDAAKG---VE-------PQTRKLMEVC-----RLRDTPIFTFINKLDRD 144 (526)
T ss_pred CCchh-------hHHHHHHHHHHCCEEEEEEecCCC---CC-------HHHHHHHHHH-----HhcCCCEEEEEECCccc
Confidence 99543 555667889999999999999832 11 1112222222 12479999999999987
Q ss_pred Ch
Q psy1086 560 GA 561 (654)
Q Consensus 560 ~~ 561 (654)
..
T Consensus 145 ~a 146 (526)
T PRK00741 145 GR 146 (526)
T ss_pred cc
Confidence 53
No 377
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.31 E-value=6.3e-12 Score=119.04 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=92.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|++|||||||++.+.+........+..+.....-.+.+++. ..+.++|+||.... .......+..+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF-------RTITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHhccC
Confidence 47999999999999999999764322111121112233334444442 25789999995321 11122334457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++++|++.. ..+..+.....++... .....|.++|.||+|+...... .+...+..+.
T Consensus 77 d~~llv~d~~~~---------~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------- 137 (165)
T cd01864 77 NGAIIAYDITRR---------SSFESVPHWIEEVEKY--GASNVVLLLIGNKCDLEEQREVLFEEACTLAEK-------- 137 (165)
T ss_pred CEEEEEEECcCH---------HHHHhHHHHHHHHHHh--CCCCCcEEEEEECcccccccccCHHHHHHHHHH--------
Confidence 788888888631 1223332222322221 1245788999999998654321 1222222111
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.....++++||+++ .+++++++.+.+.
T Consensus 138 ---------~~~~~~~e~Sa~~~-~~v~~~~~~l~~~ 164 (165)
T cd01864 138 ---------NGMLAVLETSAKES-QNVEEAFLLMATE 164 (165)
T ss_pred ---------cCCcEEEEEECCCC-CCHHHHHHHHHHh
Confidence 01125799999999 9999999988653
No 378
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.31 E-value=8.3e-12 Score=117.25 Aligned_cols=153 Identities=19% Similarity=0.352 Sum_probs=96.5
Q ss_pred hHHHHHHHHH-HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHH
Q psy1086 245 GHQFLRHVER-TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 245 ~~~~l~~i~~-~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~ 323 (654)
+.+.++|+.+ +|++++|+|+.... ... ..++..+.. ...+|.++|+||+|+...... ..+...
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~------~~~--------~~~l~~~~~-~~~~p~iiv~NK~Dl~~~~~~-~~~~~~ 65 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPE------LTR--------SRKLERYVL-ELGKKLLIVLNKADLVPKEVL-EKWKSI 65 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCc------ccC--------CHHHHHHHH-hCCCcEEEEEEhHHhCCHHHH-HHHHHH
Confidence 3456777766 99999999986311 000 011222221 146899999999998643221 221111
Q ss_pred HhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCcccc
Q psy1086 324 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNA 403 (654)
Q Consensus 324 ~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 403 (654)
... ...+++++||+++ .++++|.+.+.+.++..
T Consensus 66 ~~~------------------~~~~~~~iSa~~~-~gi~~L~~~l~~~~~~~---------------------------- 98 (156)
T cd01859 66 KES------------------EGIPVVYVSAKER-LGTKILRRTIKELAKID---------------------------- 98 (156)
T ss_pred HHh------------------CCCcEEEEEcccc-ccHHHHHHHHHHHHhhc----------------------------
Confidence 110 0025899999999 99999999887665310
Q ss_pred CCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCC
Q psy1086 404 QNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482 (654)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~ 482 (654)
....+++++|.+++||||++|++.+..... +..+++|.+.. .+..++ .+.+|||||+
T Consensus 99 ------------------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~DtpGi 156 (156)
T cd01859 99 ------------------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKITS--KIYLLDTPGV 156 (156)
T ss_pred ------------------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEcCC--CEEEEECcCC
Confidence 012478999999999999999999754322 34555554332 233333 6899999995
No 379
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.31 E-value=9e-12 Score=117.28 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=95.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||++++++........|..+.+.....+.+++. ..+.++|+||...... .....+..++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-------LTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHhCCCC
Confidence 6899999999999999999986554333332222222333444432 3578999999643211 1123345678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++++|.... ...+.+..+..++..+.. ....|.+++.||+|+.......+...+.....
T Consensus 75 ~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~--------- 135 (161)
T cd01863 75 GVILVYDVTRR---------DTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKH--------- 135 (161)
T ss_pred EEEEEEECCCH---------HHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHc---------
Confidence 88888887631 122333333333333322 24678899999999974332223332222211
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
+ ..++++||+++ +|++++++.+.+.
T Consensus 136 --------~-~~~~~~Sa~~~-~gi~~~~~~~~~~ 160 (161)
T cd01863 136 --------N-MLFIETSAKTR-DGVQQAFEELVEK 160 (161)
T ss_pred --------C-CEEEEEecCCC-CCHHHHHHHHHHh
Confidence 1 25899999999 9999999887653
No 380
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.31 E-value=8.6e-12 Score=119.20 Aligned_cols=157 Identities=23% Similarity=0.238 Sum_probs=94.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|++|||||||++.|++... ..+.. |.......+.++. ..+.++|+||... +...+...+..++
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~~-t~g~~~~~~~~~~-~~l~l~D~~G~~~-------~~~~~~~~~~~~d 83 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI--DTISP-TLGFQIKTLEYEG-YKLNIWDVGGQKT-------LRPYWRNYFESTD 83 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCcCC-ccccceEEEEECC-EEEEEEECCCCHH-------HHHHHHHHhCCCC
Confidence 3689999999999999999998622 22211 2223334455554 5789999999642 1122334456678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++|+|+... ..+........++.. .......|.++++||+|+.... ..+++.+.+.... .
T Consensus 84 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~-----~-- 145 (173)
T cd04154 84 ALIWVVDSSDR---------LRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGAL-SEEEIREALELDK-----I-- 145 (173)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcccccCC-CHHHHHHHhCccc-----c--
Confidence 88899998631 112222111122111 1123578999999999986532 2233333332110 0
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
.....+++.+||+++ +|++++++++.
T Consensus 146 ------~~~~~~~~~~Sa~~g-~gi~~l~~~l~ 171 (173)
T cd04154 146 ------SSHHWRIQPCSAVTG-EGLLQGIDWLV 171 (173)
T ss_pred ------CCCceEEEeccCCCC-cCHHHHHHHHh
Confidence 001136899999999 99999998874
No 381
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.31 E-value=1.2e-11 Score=117.61 Aligned_cols=161 Identities=15% Similarity=0.097 Sum_probs=93.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||++++.+........+..........+.+++. ..+.++|+||..... ......+..++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHhcCCC
Confidence 6899999999999999999886432211111111222233444442 246799999953211 12233455678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHh-HHHHHHHHHhcccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~ 333 (654)
.+++++|+... ..++.+..+..++..... .....|.++++||+|+..... ..+......+..
T Consensus 75 ~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------ 139 (172)
T cd01862 75 CCVLVYDVTNP---------KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN------ 139 (172)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc------
Confidence 88888888631 122333222222211110 123689999999999973221 122222222211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+...++++|+.++ .|++++++.+.+.+
T Consensus 140 -----------~~~~~~~~Sa~~~-~gv~~l~~~i~~~~ 166 (172)
T cd01862 140 -----------GNIPYFETSAKEA-INVEQAFETIARKA 166 (172)
T ss_pred -----------CCceEEEEECCCC-CCHHHHHHHHHHHH
Confidence 1136899999999 99999999987654
No 382
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.31 E-value=1.6e-11 Score=115.68 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=93.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||+++++.... ..++.+++.......+..++ ...+.++|+||...... .....+..++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA-------IRDNYHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH-------HHHHHhhcCC
Confidence 689999999999999999987432 34555554433333334442 13588999999643211 1112233445
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchH-hHHHHHHHHHhcccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~-~~~~~l~~~~~~l~~~i~~ 333 (654)
.+++++|... . ..+.........+... ....|.++|+||+|+.... .......+.....
T Consensus 74 ~~i~v~d~~~---------~---~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~------ 135 (164)
T cd04139 74 GFLLVFSITD---------M---ESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW------ 135 (164)
T ss_pred EEEEEEECCC---------H---HHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh------
Confidence 5666666642 1 2222233333333322 2578999999999987521 1122222222111
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++.+||+++ .|++++++.+.+.+
T Consensus 136 -----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~ 161 (164)
T cd04139 136 -----------G-VPYVETSAKTR-QNVEKAFYDLVREI 161 (164)
T ss_pred -----------C-CeEEEeeCCCC-CCHHHHHHHHHHHH
Confidence 1 26899999999 99999999987655
No 383
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.31 E-value=1.2e-11 Score=117.02 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=94.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+... ..+..|+.|+.....-.+..++. ..+.++||||...... ........++
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d 74 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG-IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-------MRDLYMKNGQ 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC-CCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh-------HHHHHHhhCC
Confidence 6899999999999999998753 23345555554433334555432 2457899999643211 1222345567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~~~ 335 (654)
.+++++|.+. ...++.+.....++.... .....|.+++.||+|+....... +...+..+..
T Consensus 75 ~~ilv~d~~~---------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------- 136 (164)
T cd04175 75 GFVLVYSITA---------QSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-------- 136 (164)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh--------
Confidence 7788888753 122233333333332221 23567999999999986432211 1111111110
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ .++++++.++.+.+
T Consensus 137 ---------~-~~~~~~Sa~~~-~~v~~~~~~l~~~l 162 (164)
T cd04175 137 ---------G-CAFLETSAKAK-INVNEIFYDLVRQI 162 (164)
T ss_pred ---------C-CEEEEeeCCCC-CCHHHHHHHHHHHh
Confidence 1 26899999999 99999999987654
No 384
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.31 E-value=5.7e-12 Score=118.91 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=90.5
Q ss_pred cEEEEcCCCCcHHHHHHHHH--ccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccc------cccchHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAIS--RARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR------NLGMGHQFL 249 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Ls--g~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~------~~~l~~~~l 249 (654)
+|+|+|.+|||||||++.|+ +..+...+.+++|..... +..+ ..+.++|+||+...... ...+...++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN--DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc--CeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 58999999999999999999 445555666666554432 2222 27999999997543110 001112222
Q ss_pred HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccc
Q psy1086 250 RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKD 329 (654)
Q Consensus 250 ~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~ 329 (654)
...+..+.+++++|.... ... ...++..+... ...|.++++||+|+....+...........+..
T Consensus 77 ~~~~~~~~~~~v~d~~~~--------~~~------~~~~~~~~l~~-~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~ 141 (170)
T cd01876 77 ENRENLKGVVLLIDSRHG--------PTE------IDLEMLDWLEE-LGIPFLVVLTKADKLKKSELAKALKEIKKELKL 141 (170)
T ss_pred HhChhhhEEEEEEEcCcC--------CCH------hHHHHHHHHHH-cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh
Confidence 322334445556655421 001 11111122222 357889999999986443322111111111100
Q ss_pred ccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 330 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 330 ~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.....+++++||+++ .++.++++.|.++
T Consensus 142 -------------~~~~~~~~~~Sa~~~-~~~~~l~~~l~~~ 169 (170)
T cd01876 142 -------------FEIDPPIILFSSLKG-QGIDELRALIEKW 169 (170)
T ss_pred -------------ccCCCceEEEecCCC-CCHHHHHHHHHHh
Confidence 001136889999999 9999999988764
No 385
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.30 E-value=1.6e-11 Score=115.66 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=93.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|.+|||||||++.+..... . .|.. |.......+.... ..+.+||+||... +...+..+...++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~-~-~~~p-t~g~~~~~~~~~~-~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 70 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI-V-TTIP-TIGFNVETVEYKN-ISFTVWDVGGQDK-------IRPLWRHYFQNTQG 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-c-ccCC-CCCcceEEEEECC-EEEEEEECCCCHh-------HHHHHHHHhcCCCE
Confidence 689999999999999999964322 1 2322 3334444455543 5789999999632 22223345677889
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|.+.. ..+.. ...++..+. ..+...|.+++.||.|+..... .+++.+.+.. .. +.
T Consensus 71 ~i~v~D~~~~---------~s~~~---~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~-~~----~~ 132 (159)
T cd04150 71 LIFVVDSNDR---------ERIGE---AREELQRMLNEDELRDAVLLVFANKQDLPNAMS-AAEVTDKLGL-HS----LR 132 (159)
T ss_pred EEEEEeCCCH---------HHHHH---HHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCc-cc----cC
Confidence 9999998731 12222 222222221 1234689999999999864322 1222222211 00 00
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
. ....++++||+++ +|+++++++|.
T Consensus 133 ~--------~~~~~~~~Sak~g-~gv~~~~~~l~ 157 (159)
T cd04150 133 N--------RNWYIQATCATSG-DGLYEGLDWLS 157 (159)
T ss_pred C--------CCEEEEEeeCCCC-CCHHHHHHHHh
Confidence 0 0125778999999 99999998874
No 386
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.30 E-value=1.5e-11 Score=115.20 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=100.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||++++.+.. ....++.++.......+..++. ..+.++|+||... +.......+..++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-------FSAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHHhcCC
Confidence 58999999999999999999765 5566777776666666665531 3578999999643 1122234455677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh-HHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~~~ 335 (654)
++++|+|.... .....+......+..... ....|.++++||+|+..... ..+..........
T Consensus 73 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------- 135 (160)
T cd00876 73 GFILVYSITDR---------ESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG------- 135 (160)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHHHHHHHHHHcC-------
Confidence 78888887531 223333333333332221 13689999999999876322 1122222222110
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.+++.+|++++ .+++++++.|.+.
T Consensus 136 -----------~~~~~~S~~~~-~~i~~l~~~l~~~ 159 (160)
T cd00876 136 -----------CPFIETSAKDN-INIDEVFKLLVRE 159 (160)
T ss_pred -----------CcEEEeccCCC-CCHHHHHHHHHhh
Confidence 25899999999 9999999988653
No 387
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.30 E-value=5.3e-12 Score=122.93 Aligned_cols=161 Identities=20% Similarity=0.322 Sum_probs=96.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC-------CCCCCCCccccccceEEEEeC-------------CCccEEEEecCccccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRAR-------PKIASYPFTTIKPNVGVITFD-------------DFRKMSVADLPGLIEG 237 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~-------~~i~~~~~tTl~p~~G~v~~~-------------~~~~~~i~D~PGl~~~ 237 (654)
+|+++|.+|+|||||+++|++.. ......+.+|.......+.+. ....+.++||||..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 58999999999999999998731 111223445666665555543 13478999999963
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-
Q psy1086 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI- 316 (654)
Q Consensus 238 ~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~- 316 (654)
.+...+.+....+|.+++|+|+... . . ....... .+.. ....|.++++||+|+....+.
T Consensus 80 -----~~~~~~~~~~~~~d~vi~VvD~~~~------~--~-~~~~~~~-----~~~~-~~~~~~iiv~NK~Dl~~~~~~~ 139 (192)
T cd01889 80 -----SLIRTIIGGAQIIDLMLLVVDATKG------I--Q-TQTAECL-----VIGE-ILCKKLIVVLNKIDLIPEEERE 139 (192)
T ss_pred -----HHHHHHHHHHhhCCEEEEEEECCCC------c--c-HHHHHHH-----HHHH-HcCCCEEEEEECcccCCHHHHH
Confidence 1334444555566788889998631 0 0 0111111 1111 246799999999998754322
Q ss_pred --HHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 317 --YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 317 --~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+.+.+.+... ...+ .....+++++||+++ .|+++|++.+...+
T Consensus 140 ~~~~~~~~~l~~~---~~~~--------~~~~~~vi~iSa~~g-~gi~~L~~~l~~~~ 185 (192)
T cd01889 140 RKIEKMKKKLQKT---LEKT--------RFKNSPIIPVSAKPG-GGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHH---HHhc--------CcCCCCEEEEeccCC-CCHHHHHHHHHhcc
Confidence 22222222110 0000 001136899999999 99999999987654
No 388
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.30 E-value=8.7e-11 Score=137.69 Aligned_cols=165 Identities=20% Similarity=0.278 Sum_probs=102.6
Q ss_pred CChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-----------------eEEEEecCCCCCCCccccchhHHHH
Q psy1086 435 AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------------KMSVADLPGLIEGAHRNLGMGHQFL 497 (654)
Q Consensus 435 ~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-----------------~~~i~DTpG~~~~~~~~~~~~~~~~ 497 (654)
++||||+..+.+........-++|.+.-...+.++... .+.+|||||+.. +.....
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-------F~~lr~ 544 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-------FTSLRK 544 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-------HHHHHH
Confidence 34999999999988866667777776665555554211 389999999533 444444
Q ss_pred HHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh----------------
Q psy1086 498 RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA---------------- 561 (654)
Q Consensus 498 ~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~---------------- 561 (654)
..++.+|++++|+|+++ ++. .++++.+.. +. ..++|+|+|+||+|+...
T Consensus 545 ~g~~~aDivlLVVDa~~---Gi~---~qT~e~I~~----lk-----~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q 609 (1049)
T PRK14845 545 RGGSLADLAVLVVDINE---GFK---PQTIEAINI----LR-----QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQ 609 (1049)
T ss_pred hhcccCCEEEEEEECcc---cCC---HhHHHHHHH----HH-----HcCCCEEEEEECCCCccccccccchhhhhhhhhh
Confidence 56788999999999983 232 233333322 11 136899999999998632
Q ss_pred -HHHHHHHHHHHHhhHhhhccCCC---CC-CccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 562 -QEIYDGIRDTLHNLKDHIHKYPE---EF-QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 562 -~~v~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+.+..++...+.++...+...+. .| ..+.+...++++||||+||+ ||++|+..+..+.+.
T Consensus 610 ~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe-GId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 610 DQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE-GIPELLMMVAGLAQK 674 (1049)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC-CHHHHHHHHHHhhHH
Confidence 11122222222222111111110 11 11234567899999999999 999999887655443
No 389
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.30 E-value=1.8e-11 Score=118.97 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=97.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+..... ...|+.|+.....-.+.+++. ..+.+||+||..... .....++..++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT-------ALRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHHHhCC
Confidence 489999999999999999986432 334555544333333444432 247889999963322 11223456678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccchHhHHH-HHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEIYD-GIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~~~~~~~-~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|++. ...++.+.....++...... ....|.++|.||+|+........ ...+....
T Consensus 73 ~~ilv~d~~~---------~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-------- 135 (190)
T cd04144 73 GFILVYSITS---------RSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARR-------- 135 (190)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHH--------
Confidence 8888888863 12333343333333332211 24578999999999864322111 11111111
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.+ ..++.+||+++ .|++++++.+.+.+..
T Consensus 136 ---------~~-~~~~e~SAk~~-~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 136 ---------LG-CEFIEASAKTN-VNVERAFYTLVRALRQ 164 (190)
T ss_pred ---------hC-CEEEEecCCCC-CCHHHHHHHHHHHHHH
Confidence 11 25799999999 9999999999876543
No 390
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.30 E-value=1.6e-11 Score=120.48 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=96.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCcc-ccccceEEEEeC-C-CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFT-TIKPNVGVITFD-D-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~t-Tl~p~~G~v~~~-~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|+++|.+|||||||++.+.+.... ..|..| ..+...-.+.++ + ...+.+||+||.... .......+..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~ 73 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-------GGMTRVYYRG 73 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-------hhhHHHHhCC
Confidence 6899999999999999999875322 222221 222223345554 2 224789999996321 1122334456
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchH-hHHHHHHHHHhcccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNLKDHI 331 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~-~~~~~l~~~~~~l~~~i 331 (654)
++.+++|+|++. ...++.+..+..++..... .....|.++|.||+|+.... ...+++.++....
T Consensus 74 a~~~ilv~D~t~---------~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~---- 140 (201)
T cd04107 74 AVGAIIVFDVTR---------PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN---- 140 (201)
T ss_pred CCEEEEEEECCC---------HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----
Confidence 788888888863 1223333323333322211 12457999999999986321 1222333332211
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
++..++.+||+++ .+++++++++.+.+..
T Consensus 141 -------------~~~~~~e~Sak~~-~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 141 -------------GFIGWFETSAKEG-INIEEAMRFLVKNILA 169 (201)
T ss_pred -------------CCceEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1126899999999 9999999999876644
No 391
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=6.8e-11 Score=109.29 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=109.7
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc-------cCCC---cccccceeEEEEeCCCceEEEEecCCCCCCCccccchh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI-------ASYP---FTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG 493 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~-------~~~~---~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~ 493 (654)
..+|+++|+-++||||+++.++...... .+.. .+|+....+.+.+++...+.++|||| +++|.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG-------q~RF~ 82 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG-------QERFK 82 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC-------cHHHH
Confidence 3589999999999999999999875311 1233 37777888888888766899999999 55577
Q ss_pred HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHH
Q psy1086 494 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 573 (654)
Q Consensus 494 ~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~ 573 (654)
.++.-+.+++.++++++|.+... .++.. .+.+.+. ....+|++|++||.|+.+..- .+.+.+.++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~---------~~~a~-~ii~f~~----~~~~ip~vVa~NK~DL~~a~p-pe~i~e~l~ 147 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPI---------TFHAE-EIIDFLT----SRNPIPVVVAINKQDLFDALP-PEKIREALK 147 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCc---------chHHH-HHHHHHh----hccCCCEEEEeeccccCCCCC-HHHHHHHHH
Confidence 77888899999999999998532 22211 2222221 112389999999999986532 122333332
Q ss_pred hhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 574 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.- ....|+|+++|..++ ++.+.++.+...
T Consensus 148 ~~----------------~~~~~vi~~~a~e~~-~~~~~L~~ll~~ 176 (187)
T COG2229 148 LE----------------LLSVPVIEIDATEGE-GARDQLDVLLLK 176 (187)
T ss_pred hc----------------cCCCceeeeecccch-hHHHHHHHHHhh
Confidence 10 013579999999998 888888776543
No 392
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.29 E-value=1.7e-11 Score=115.15 Aligned_cols=156 Identities=22% Similarity=0.216 Sum_probs=95.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|.+|||||||++++++..+. . ...|.......+.+.+ ..+.++|+||.... ...+...+..++.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ 69 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-TIPTIGFNVETVEYKN-VSFTVWDVGGQDKI-------RPLWKHYYENTNG 69 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-CCCCcCcceEEEEECC-EEEEEEECCCChhh-------HHHHHHHhccCCE
Confidence 5899999999999999999987521 1 2234444455566654 47999999996532 1223344556788
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCc
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 337 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~ 337 (654)
+++|+|+... ..+.........+.... .....|.++++||+|+..... .+++.+.+.....
T Consensus 70 ~i~v~D~~~~---------~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~~-------- 130 (158)
T cd00878 70 IIFVVDSSDR---------ERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGALS-VSELIEKLGLEKI-------- 130 (158)
T ss_pred EEEEEECCCH---------HHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCccccC-HHHHHHhhChhhc--------
Confidence 8899998731 11222211212111111 135789999999999875431 2233333221100
Q ss_pred cchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 338 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 338 ~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
.....+++.+||+++ .|++++++.|.
T Consensus 131 -----~~~~~~~~~~Sa~~~-~gv~~~~~~l~ 156 (158)
T cd00878 131 -----LGRRWHIQPCSAVTG-DGLDEGLDWLL 156 (158)
T ss_pred -----cCCcEEEEEeeCCCC-CCHHHHHHHHh
Confidence 001136899999999 99999988875
No 393
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.29 E-value=1.2e-11 Score=116.25 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=93.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|+|||||++.+.+........+.++.......+..... ..+.++|+||...... +. ...+..++
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~---~~~~~~~~ 74 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA----LG---PIYYRDAD 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH----hh---HHHhccCC
Confidence 6899999999999999999876443322222222222333443331 2578999999542211 11 11234567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|.++. ..++.+.....++..+.. ...|.++++||+|+...... .+.+.+.....
T Consensus 75 ~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-------- 135 (162)
T cd04123 75 GAILVYDITDA---------DSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLERQRVVSKSEAEEYAKSV-------- 135 (162)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHc--------
Confidence 88888887631 233334334444443332 26799999999998743221 12222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
+ ..++++|++++ .+++++++++.+.
T Consensus 136 ---------~-~~~~~~s~~~~-~gi~~~~~~l~~~ 160 (162)
T cd04123 136 ---------G-AKHFETSAKTG-KGIEELFLSLAKR 160 (162)
T ss_pred ---------C-CEEEEEeCCCC-CCHHHHHHHHHHH
Confidence 0 25789999999 9999999998754
No 394
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.29 E-value=1.3e-11 Score=117.79 Aligned_cols=156 Identities=22% Similarity=0.239 Sum_probs=93.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|++|||||||++.|++..... + ..|.......+.+.+ ..+.++|+||... +...+...+..++
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~--~-~~t~g~~~~~i~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~~ 83 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH--I-TPTQGFNIKTVQSDG-FKLNVWDIGGQRA-------IRPYWRNYFENTD 83 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc--c-CCCCCcceEEEEECC-EEEEEEECCCCHH-------HHHHHHHHhcCCC
Confidence 479999999999999999999863311 1 112222233666655 5789999999532 2223344456677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|+... ..+......+..+.. .....|.++++||+|+..... .+.+.+.+.. .. +
T Consensus 84 ~ii~v~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~-~~----~ 145 (173)
T cd04155 84 CLIYVIDSADK------------KRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP-AEEIAEALNL-HD----L 145 (173)
T ss_pred EEEEEEeCCCH------------HHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC-HHHHHHHcCC-cc----c
Confidence 88888888631 122222222222111 124689999999999865332 2223332221 00 0
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
. .....++++||+++ +|+++++++|.+
T Consensus 146 ~--------~~~~~~~~~Sa~~~-~gi~~~~~~l~~ 172 (173)
T cd04155 146 R--------DRTWHIQACSAKTG-EGLQEGMNWVCK 172 (173)
T ss_pred C--------CCeEEEEEeECCCC-CCHHHHHHHHhc
Confidence 0 01125789999999 999999998753
No 395
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.29 E-value=1.8e-11 Score=116.48 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=94.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
-+|+++|.+|||||||++.+..... . .+.. |.......+.... ..+.+||+||.... ...+...+..++
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~-~-~~~~-t~g~~~~~~~~~~-~~~~l~Dt~G~~~~-------~~~~~~~~~~a~ 78 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQS-V-TTIP-TVGFNVETVTYKN-VKFNVWDVGGQDKI-------RPLWRHYYTGTQ 78 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCC-c-cccC-CcccceEEEEECC-EEEEEEECCCCHHH-------HHHHHHHhccCC
Confidence 3799999999999999999976432 1 2222 2233333444443 57999999996421 122233456788
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|++.. ..+.....++..+.. .+...|.+|+.||+|+.... ..+++.+.+... . .
T Consensus 79 ~ii~v~D~t~~------------~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~-~----~ 140 (168)
T cd04149 79 GLIFVVDSADR------------DRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM-KPHEIQEKLGLT-R----I 140 (168)
T ss_pred EEEEEEeCCch------------hhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC-CHHHHHHHcCCC-c----c
Confidence 99999998731 122223333333321 23567999999999986431 123333332210 0 0
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
. . ....++++||+++ .|+++++++|.
T Consensus 141 ~-------~-~~~~~~~~SAk~g-~gv~~~~~~l~ 166 (168)
T cd04149 141 R-------D-RNWYVQPSCATSG-DGLYEGLTWLS 166 (168)
T ss_pred C-------C-CcEEEEEeeCCCC-CChHHHHHHHh
Confidence 0 0 0125789999999 99999998875
No 396
>KOG0410|consensus
Probab=99.29 E-value=5.1e-12 Score=125.68 Aligned_cols=162 Identities=23% Similarity=0.251 Sum_probs=118.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc-chhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~-~~~~~~~~~~~~a 503 (654)
+-|+++|.+|+|||||++.|.+....-.+.-+.|.|+......++.+..+.+.||-|+....+.+. ..+..++..+..|
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaea 258 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEA 258 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhc
Confidence 568999999999999999999877766778899999999999998888899999999988776554 3557788999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|+|++. -+...+++....+++..- +......+|=|-||+|..... ..+
T Consensus 259 dlllHvvDiShP~------ae~q~e~Vl~vL~~igv~-~~pkl~~mieVdnkiD~e~~~---------~e~--------- 313 (410)
T KOG0410|consen 259 DLLLHVVDISHPN------AEEQRETVLHVLNQIGVP-SEPKLQNMIEVDNKIDYEEDE---------VEE--------- 313 (410)
T ss_pred ceEEEEeecCCcc------HHHHHHHHHHHHHhcCCC-cHHHHhHHHhhcccccccccc---------Ccc---------
Confidence 9999999999653 233334444444433210 011123456778888875431 000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+ ..+++||+||. |.+++...+...+.
T Consensus 314 --------E~n-~~v~isaltgd-gl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 --------EKN-LDVGISALTGD-GLEELLKAEETKVA 341 (410)
T ss_pred --------ccC-CccccccccCc-cHHHHHHHHHHHhh
Confidence 000 15899999999 99999998876553
No 397
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.28 E-value=2.6e-11 Score=117.13 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=94.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeC--CCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD--DFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~--~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|||||||++.+..... +..+|........-.+... ....+.++||||... +...+...+..+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 76 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-------LRPLWKSYTRCT 76 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh-------HHHHHHHHhccC
Confidence 689999999999999999987432 2223322222211122221 224689999999532 122233345568
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++|+|+++. ..+..+.....++..+.. ....|.++++||+|+..... .+.+.+.+. +....
T Consensus 77 d~ii~v~D~~~~---------~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~-~~~~~~~~~-~~~~~---- 140 (183)
T cd04152 77 DGIVFVVDSVDV---------ERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALS-VSEVEKLLA-LHELS---- 140 (183)
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCC-HHHHHHHhC-ccccC----
Confidence 889999998631 122222222223333222 25789999999999864211 122222221 11000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
......++++||+++ +|++++++.+.+.+.
T Consensus 141 -------~~~~~~~~~~SA~~~-~gi~~l~~~l~~~l~ 170 (183)
T cd04152 141 -------ASTPWHVQPACAIIG-EGLQEGLEKLYEMIL 170 (183)
T ss_pred -------CCCceEEEEeecccC-CCHHHHHHHHHHHHH
Confidence 000125789999999 999999999887664
No 398
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.28 E-value=3.3e-11 Score=113.76 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=89.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceE--EEEeCC-CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVG--VITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G--~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|+++|.+|||||||++.+.+.... ..+.. |..+... .+..++ ...+.+||+||..... ......+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYE-PQQLS-TYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------TMHASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCcCC-ceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhCC
Confidence 5899999999999999999864321 11211 2222221 222332 1247799999964321 122334556
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++.+++|+|.+.. .....+..+..++ .......|.++++||+|+.... ..+..+..+.
T Consensus 73 ~d~~i~v~d~~~~---------~s~~~~~~~~~~i---~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~-------- 130 (161)
T cd04124 73 AHACILVFDVTRK---------ITYKNLSKWYEEL---REYRPEIPCIVVANKIDLDPSV--TQKKFNFAEK-------- 130 (161)
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHH---HHhCCCCcEEEEEECccCchhH--HHHHHHHHHH--------
Confidence 7888999988631 1222232222222 2223468999999999985321 1111111111
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ .+++.+||+++ .|++++++.+.+..
T Consensus 131 ---------~~-~~~~~~Sa~~~-~gv~~l~~~l~~~~ 157 (161)
T cd04124 131 ---------HN-LPLYYVSAADG-TNVVKLFQDAIKLA 157 (161)
T ss_pred ---------cC-CeEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 01 25889999999 99999999887654
No 399
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.28 E-value=2e-11 Score=115.23 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=93.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc-CCCCCCCCcccc-ccceEEEEeC--CCccEEEEecCcccccccccccchHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRA-RPKIASYPFTTI-KPNVGVITFD--DFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 253 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~-~~~i~~~~~tTl-~p~~G~v~~~--~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~ 253 (654)
+|+++|.+|||||||++++... ......|.+|+- ....-.+..+ ....+.+||+||.... ......++.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 74 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY-------SDMVSNYWE 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH-------HHHHHHHhC
Confidence 6899999999999999999753 233445554431 1111123332 2246899999995321 112234556
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
++|++++|+|++.. .....+ ...+..+.......|.++|.||.|+....+......+.+...
T Consensus 75 ~~d~ii~v~d~~~~---------~s~~~~---~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------ 136 (164)
T cd04101 75 SPSVFILVYDVSNK---------ASFENC---SRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA------ 136 (164)
T ss_pred CCCEEEEEEECcCH---------HHHHHH---HHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH------
Confidence 78899999998631 122222 223333222224689999999999865432221111111110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.+ ..++.+||.++ .+++++++.+.+.
T Consensus 137 ----------~~-~~~~~~Sa~~~-~gi~~l~~~l~~~ 162 (164)
T cd04101 137 ----------NQ-LKFFKTSALRG-VGYEEPFESLARA 162 (164)
T ss_pred ----------cC-CeEEEEeCCCC-CChHHHHHHHHHH
Confidence 01 25789999999 9999999888754
No 400
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=2.5e-11 Score=118.65 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=91.7
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-------cEEEEecCcccc--c
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------KMSVADLPGLIE--G 237 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-------~~~i~D~PGl~~--~ 237 (654)
.+|+|++..|+-|.|||++|||||||||+|+|. ..|..|.|.+++.. .-.+..-+-++. .
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-----------~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-----------EKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCcccCCCCCCEEEEeccCcccchhh
Confidence 467777777778999999999999999999996 44555555443310 011111122221 1
Q ss_pred ccccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----ccc
Q psy1086 238 AHRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKM 308 (654)
Q Consensus 238 ~~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~ 308 (654)
..+|..++.... ...+++...+..+.+.++. +..-..+|++++++..++++|...|.++++ ..+
T Consensus 89 v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-------~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 89 VLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-------DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred HHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-------hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 123333332221 1223555666667766542 344478999999999999999999999998 678
Q ss_pred CccchHhHHHHHHHHHhc
Q psy1086 309 DVEGAQEIYDGIRDTLHN 326 (654)
Q Consensus 309 D~~~~~~~~~~l~~~~~~ 326 (654)
|........+++.+..++
T Consensus 162 DalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 162 DALTREELQDELLRLWEE 179 (248)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 877776666666665544
No 401
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.27 E-value=2e-11 Score=115.66 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=90.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+.+.... ..|..|.-....-.+..+. ...+.++|+||...... ........++
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~~ 74 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA-------MQRLSISKGH 74 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH-------HHHHHhhcCC
Confidence 6899999999999999999875432 2222222111111222222 12578999999753221 1122344567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH-hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~-~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++. ....+.+..+...+..+.. .....|.++|.||+|+....+...........
T Consensus 75 ~~ilv~d~~~---------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--------- 136 (165)
T cd04140 75 AFILVYSVTS---------KQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT--------- 136 (165)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH---------
Confidence 7788888763 1233333333333332221 12467999999999986532221111111110
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
... ..++.+||+++ .+++++++.|.+
T Consensus 137 -------~~~-~~~~e~SA~~g-~~v~~~f~~l~~ 162 (165)
T cd04140 137 -------EWN-CAFMETSAKTN-HNVQELFQELLN 162 (165)
T ss_pred -------HhC-CcEEEeecCCC-CCHHHHHHHHHh
Confidence 001 25789999999 999999998864
No 402
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.27 E-value=1e-10 Score=130.08 Aligned_cols=126 Identities=19% Similarity=0.267 Sum_probs=82.8
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCcc----------------------CCCcccccceeEEEEeCCCceEEEEec
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKIA----------------------SYPFTTIKPNVGVITFDDFRKMSVADL 479 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~----------------------~~~~~t~~~~~~~v~~~~~~~~~i~DT 479 (654)
.+..+++++|+.++|||||+.+|+.....+. ...+++.......+.+++ .++.+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~-~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD-CLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC-eEEEEEEC
Confidence 4456899999999999999999864222110 022344445555677776 48999999
Q ss_pred CCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc
Q psy1086 480 PGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 559 (654)
Q Consensus 480 pG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~ 559 (654)
||+. .+...+..+++.+|++++|+|++.. +. .....+.+... ..+.|+++++||+|+.
T Consensus 88 PG~~-------df~~~~~~~l~~aD~aIlVvDa~~g---v~-------~~t~~l~~~~~-----~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHE-------DFSEDTYRTLTAVDNCLMVIDAAKG---VE-------TRTRKLMEVTR-----LRDTPIFTFMNKLDRD 145 (527)
T ss_pred CChh-------hHHHHHHHHHHhCCEEEEEEECCCC---CC-------HHHHHHHHHHH-----hcCCCEEEEEECcccc
Confidence 9963 3555667889999999999999832 11 11122222221 2468999999999986
Q ss_pred C--hHHHHHHHHH
Q psy1086 560 G--AQEIYDGIRD 570 (654)
Q Consensus 560 ~--~~~v~~~~~~ 570 (654)
. ..++.+++.+
T Consensus 146 ~~~~~~ll~~i~~ 158 (527)
T TIGR00503 146 IRDPLELLDEVEN 158 (527)
T ss_pred CCCHHHHHHHHHH
Confidence 3 2334444443
No 403
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.27 E-value=2e-11 Score=115.04 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=91.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCcc-ccccceEEEEeC--C-CccEEEEecCcccccccccccchHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFT-TIKPNVGVITFD--D-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 253 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~t-Tl~p~~G~v~~~--~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~ 253 (654)
+|+++|.+|+|||||++.+++.... ..+..| ........+.+. + ...+.++|+||..... .....++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~ 73 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD-------AITKAYYR 73 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH-------HhHHHHhc
Confidence 5899999999999999999975432 222222 122212223333 1 2358899999953221 11233445
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~ 332 (654)
.++.+++|+|+... +.+..+...+..+.......|.++++||+|+...... .++..+.....
T Consensus 74 ~~~~~v~v~d~~~~------------~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~----- 136 (162)
T cd04106 74 GAQACILVFSTTDR------------ESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL----- 136 (162)
T ss_pred CCCEEEEEEECCCH------------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHc-----
Confidence 66777788777531 2233333333333333457899999999998653221 11222222111
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
+ .+++++||+++ .+++++++.+..
T Consensus 137 ------------~-~~~~~~Sa~~~-~~v~~l~~~l~~ 160 (162)
T cd04106 137 ------------Q-LPLFRTSVKDD-FNVTELFEYLAE 160 (162)
T ss_pred ------------C-CeEEEEECCCC-CCHHHHHHHHHH
Confidence 1 15899999999 999999988754
No 404
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.27 E-value=4.9e-11 Score=112.92 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=77.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEe--CCCceEEEEecCCCCCCCccccchhHHHHH---H
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF--DDFRKMSVADLPGLIEGAHRNLGMGHQFLR---H 499 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~--~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~---~ 499 (654)
..|.++|++|+|||+|+.+|..+.... +.|--.......+ .....+.++|+||. ..++..+.. +
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n~~~~~~~~~~~~~~lvD~PGH-------~rlr~~~~~~~~~ 72 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENNIAYNVNNSKGKKLRLVDIPGH-------PRLRSKLLDELKY 72 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEECCGSSTCGTCECEEEETT--------HCCCHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCCceEEeecCCCCEEEEEECCCc-------HHHHHHHHHhhhc
Confidence 568999999999999999999973311 1111111111122 12347999999994 445544444 4
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh---HHHHHHHHHHHHhhH
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLK 576 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~---~~v~~~~~~~~~~~~ 576 (654)
.+.+.++|+|+|++.+ .++.-+.-+.++.-+..........|++|++||.|+..+ ..+...++.++..++
T Consensus 73 ~~~~k~IIfvvDSs~~-------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~lr 145 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTD-------QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDKLR 145 (181)
T ss_dssp HGGEEEEEEEEETTTH-------HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHHHH
T ss_pred hhhCCEEEEEEeCccc-------hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHHHH
Confidence 8899999999999732 122233333334433332223356899999999999764 345555555555543
No 405
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.27 E-value=2.3e-11 Score=115.14 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=96.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++++.... ....|+.++.......+.+++. ..+.+||+||..... .......+..++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD------TEQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc------cchHHHHHHhCC
Confidence 48999999999999998887632 3445666654333344444432 247899999975311 112334456688
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~~~ 335 (654)
++++++|++.. ..++.+..+...+..+.......|.++|.||+|+....... +...+.....
T Consensus 74 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------- 136 (165)
T cd04146 74 GFVLVYSITDR---------SSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL-------- 136 (165)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc--------
Confidence 88999998631 22333333333333322112368999999999985432111 1111111110
Q ss_pred CccchhhhcccceEEEeecccCcc-chHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNST-DVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~-~i~~L~~~i~~~l 372 (654)
+ ..++.+||+++ . ++++++..+.+.+
T Consensus 137 ---------~-~~~~e~Sa~~~-~~~v~~~f~~l~~~~ 163 (165)
T cd04146 137 ---------G-CLFFEVSAAED-YDGVHSVFHELCREV 163 (165)
T ss_pred ---------C-CEEEEeCCCCC-chhHHHHHHHHHHHH
Confidence 1 25789999998 6 8999998887543
No 406
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.27 E-value=3.4e-11 Score=117.94 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=94.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccc-cccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTT-IKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tT-l~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
-+|++||++|||||||++.+.+.... ..|..|. .....-.+.+++. ..+.+||+||.... ......++..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~~ 78 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF-------RTITSTYYRG 78 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH-------HHHHHHHhCC
Confidence 37999999999999999999875432 2222221 1122223333332 25789999995321 1222334455
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhcccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHK 333 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~ 333 (654)
++.+++|+|++.. ..++.+ ...+..+.......|.++|.||+|+....... ++..+.....
T Consensus 79 a~~iilv~D~~~~---------~s~~~~---~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~------ 140 (199)
T cd04110 79 THGVIVVYDVTNG---------ESFVNV---KRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQM------ 140 (199)
T ss_pred CcEEEEEEECCCH---------HHHHHH---HHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHc------
Confidence 6778888888631 222333 33333332223457889999999986543221 2222222110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+...+..
T Consensus 141 -----------~-~~~~e~Sa~~~-~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 141 -----------G-ISLFETSAKEN-INVEEMFNCITELVLR 168 (199)
T ss_pred -----------C-CEEEEEECCCC-cCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999998876543
No 407
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=2.7e-11 Score=126.13 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=109.0
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc---------------cCCCcccccceeEEEEeCC--C--ceEEEEecCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI---------------ASYPFTTIKPNVGVITFDD--F--RKMSVADLPGLI 483 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~---------------~~~~~~t~~~~~~~v~~~~--~--~~~~i~DTpG~~ 483 (654)
+..+..++-+..-|||||..+++.....+ .-+.++|+..+...+.|.. + ..+.++||||..
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 33567788899999999999998654322 1267899999888877642 2 268899999977
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh--
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA-- 561 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~-- 561 (654)
++. .++.+.+..|.++++|+|++... . .+++-..+.-+ ..+.-+|-|.||+||+.+
T Consensus 88 DFs-------YEVSRSLAACEGalLvVDAsQGv---e------AQTlAN~YlAl------e~~LeIiPViNKIDLP~Adp 145 (603)
T COG0481 88 DFS-------YEVSRSLAACEGALLVVDASQGV---E------AQTLANVYLAL------ENNLEIIPVLNKIDLPAADP 145 (603)
T ss_pred ceE-------EEehhhHhhCCCcEEEEECccch---H------HHHHHHHHHHH------HcCcEEEEeeecccCCCCCH
Confidence 654 33448899999999999999432 1 22332222222 245678889999999865
Q ss_pred HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 562 QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 562 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+..++++.+. ..-...+.+|||||. ||+++++.|...+
T Consensus 146 ervk~eIe~~iG------------------id~~dav~~SAKtG~-gI~~iLe~Iv~~i 185 (603)
T COG0481 146 ERVKQEIEDIIG------------------IDASDAVLVSAKTGI-GIEDVLEAIVEKI 185 (603)
T ss_pred HHHHHHHHHHhC------------------CCcchheeEecccCC-CHHHHHHHHHhhC
Confidence 234444333221 111247899999999 9999999998765
No 408
>KOG1491|consensus
Probab=99.26 E-value=1.4e-10 Score=116.61 Aligned_cols=92 Identities=37% Similarity=0.676 Sum_probs=85.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc----------------eEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~----------------~~~i~DTpG~~~~~~~ 488 (654)
.+++++|.+++||||++|.+........++|++|+++...++.+.+.+ .+.++|+||+.++++.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 589999999999999999999998888899999999999999887644 6899999999999999
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcc
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQ 516 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~ 516 (654)
..++++.|+.++|.+|++++|+++..-+
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d~ 128 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFEDT 128 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCcc
Confidence 9999999999999999999999987543
No 409
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.26 E-value=1.8e-11 Score=115.28 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=93.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|.++|++|||||||++.+.+........+..+.....-.+.+++. ..+.++|+||..... ......+..++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~~~ 74 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR-------SVTRSYYRGAA 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHH-------HhHHHHhcCCC
Confidence 6899999999999999999876543333332222222233444432 257899999963221 12233445667
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++.. .....+..+..++..+. ....|.+++.||+|+...... .+.........
T Consensus 75 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-------- 135 (161)
T cd04113 75 GALLVYDITNR---------TSFEALPTWLSDARALA--SPNIVVILVGNKSDLADQREVTFLEASRFAQEN-------- 135 (161)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcchhccCCHHHHHHHHHHc--------
Confidence 78888888631 22233333322222221 146789999999998653221 22222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
+ ..++.+||+++ .+++++++.+.+
T Consensus 136 ---------~-~~~~~~Sa~~~-~~i~~~~~~~~~ 159 (161)
T cd04113 136 ---------G-LLFLETSALTG-ENVEEAFLKCAR 159 (161)
T ss_pred ---------C-CEEEEEECCCC-CCHHHHHHHHHH
Confidence 1 26899999999 999999998865
No 410
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.26 E-value=4e-11 Score=113.05 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=92.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||++++.+........|-.......-.+.++.. ..+.++|+||..... ......+..++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~ 75 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR-------SLAPMYYRGAA 75 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHhccCC
Confidence 6899999999999999999986543212221111112223444432 257899999953211 11112344567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh-cCcceeEeecccCccchHh-HHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL-LEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l-~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++++|+... +.+......+..+.... ...|.++++||+|+..... ..+...+.....
T Consensus 76 ~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~------- 136 (163)
T cd01860 76 AAIVVYDITSE------------ESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN------- 136 (163)
T ss_pred EEEEEEECcCH------------HHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc-------
Confidence 78888887631 23333344444333322 3567889999999874221 122222222211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++++||+++ .++.++++.+.+.+
T Consensus 137 ----------~-~~~~~~Sa~~~-~~v~~l~~~l~~~l 162 (163)
T cd01860 137 ----------G-LLFFETSAKTG-ENVNELFTEIAKKL 162 (163)
T ss_pred ----------C-CEEEEEECCCC-CCHHHHHHHHHHHh
Confidence 1 25899999999 99999999987654
No 411
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.26 E-value=2.6e-11 Score=115.40 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=91.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|+|||||++.+.+.......++..+.....-.+.+++. ..+.+||+||..... ......+..+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~ 78 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR-------SLRTPFYRGS 78 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH-------HhHHHHhcCC
Confidence 47999999999999999999875432222221111211223334332 246789999953211 1122233445
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
+.++++.|+.. ......+..+..++..+... ....|.+++.||.|+.......++..+.....
T Consensus 79 d~~i~v~d~~~---------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------ 143 (170)
T cd04116 79 DCCLLTFAVDD---------SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN------ 143 (170)
T ss_pred CEEEEEEECCC---------HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC------
Confidence 66666777653 12233333333333333211 13468999999999864332233333333221
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
+...++.+||+++ .++.++++.+.+
T Consensus 144 -----------~~~~~~e~Sa~~~-~~v~~~~~~~~~ 168 (170)
T cd04116 144 -----------GDYPYFETSAKDA-TNVAAAFEEAVR 168 (170)
T ss_pred -----------CCCeEEEEECCCC-CCHHHHHHHHHh
Confidence 1125789999999 999999988764
No 412
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.25 E-value=4.7e-11 Score=115.09 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=97.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|.++|.+|||||||++.+..... ..+. .|...+...+.+.+ ..+.++|+||... +...+...+..++.
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~~--~~~~-pt~g~~~~~~~~~~-~~~~i~D~~Gq~~-------~~~~~~~~~~~a~~ 87 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGEI--VTTI-PTIGFNVETVEYKN-ISFTVWDVGGQDK-------IRPLWRHYFQNTQG 87 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCCC--cccc-CCcceeEEEEEECC-EEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 799999999999999999975321 1222 23333333455544 4789999999532 22223444677889
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|.+.. ..+.....++..+. ..+...|.+|++||+|+..... .+++.+.+.. .. +
T Consensus 88 iI~V~D~s~~------------~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l-~~----~- 148 (181)
T PLN00223 88 LIFVVDSNDR------------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGL-HS----L- 148 (181)
T ss_pred EEEEEeCCcH------------HHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCc-cc----c-
Confidence 9999998742 12222333333332 1335689999999999875432 3334333321 00 0
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+ ....++++||+++ +|+.+++++|.+.+.
T Consensus 149 ---~~----~~~~~~~~Sa~~g-~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 149 ---RQ----RHWYIQSTCATSG-EGLYEGLDWLSNNIA 178 (181)
T ss_pred ---CC----CceEEEeccCCCC-CCHHHHHHHHHHHHh
Confidence 00 0013567999999 999999999876553
No 413
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.25 E-value=5.3e-11 Score=114.84 Aligned_cols=159 Identities=20% Similarity=0.209 Sum_probs=97.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
-+|+|+|++|+|||||++.+..... . .+.. |.......+...+ ..+.++|+||... +.......+..++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~-~-~~~~-T~~~~~~~~~~~~-~~~~l~D~~G~~~-------~~~~~~~~~~~ad 86 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV-V-TTIP-TIGFNVETVEYKN-LKFTMWDVGGQDK-------LRPLWRHYYQNTN 86 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-c-ccCC-ccccceEEEEECC-EEEEEEECCCCHh-------HHHHHHHHhcCCC
Confidence 3799999999999999999964322 1 2322 3344445555544 5789999999632 2222334466788
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|+++. ..+.....++..+. ..+...|.+++.||.|+..... .+++.+.+.. . .+
T Consensus 87 ~iI~v~D~t~~------------~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~-~----~~ 148 (182)
T PTZ00133 87 GLIFVVDSNDR------------ERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS-TTEVTEKLGL-H----SV 148 (182)
T ss_pred EEEEEEeCCCH------------HHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCC-C----cc
Confidence 99999998631 12222333333332 1345688999999999865322 2233332221 0 00
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.. ....++.+||+++ .|+++++++|.+.+.
T Consensus 149 ~~--------~~~~~~~~Sa~tg-~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 149 RQ--------RNWYIQGCCATTA-QGLYEGLDWLSANIK 178 (182)
T ss_pred cC--------CcEEEEeeeCCCC-CCHHHHHHHHHHHHH
Confidence 00 0124668999999 999999999886554
No 414
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.25 E-value=1.5e-11 Score=138.87 Aligned_cols=152 Identities=25% Similarity=0.405 Sum_probs=102.1
Q ss_pred cCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc--ccchHHHHHHHHHHHHHHH
Q psy1086 183 GFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN--LGMGHQFLRHVERTKLIAM 260 (654)
Q Consensus 183 G~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~--~~l~~~~l~~i~~~~~il~ 260 (654)
|.||+|||||+|+|+|....+.++|++|.+...+.+.+++ ..+.++||||..+..... ..+.+.+.. .+.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~-~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG-EDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC-eEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEE
Confidence 8999999999999999988899999999999999998876 479999999987543221 111122211 134677888
Q ss_pred hhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCccch
Q psy1086 261 IVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQP 340 (654)
Q Consensus 261 vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~ 340 (654)
|+|.+.. + ..+... .++. + ...|.++++||+|+...........+..+.+
T Consensus 79 VvDat~l--------e---r~l~l~-~ql~---~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l------------- 128 (591)
T TIGR00437 79 VVDASNL--------E---RNLYLT-LQLL---E--LGIPMILALNLVDEAEKKGIRIDEEKLEERL------------- 128 (591)
T ss_pred EecCCcc--------h---hhHHHH-HHHH---h--cCCCEEEEEehhHHHHhCCChhhHHHHHHHc-------------
Confidence 8887632 1 111111 1111 1 4689999999999864432221111111110
Q ss_pred hhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 341 EKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 341 ~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ +|++++++.+.+..
T Consensus 129 ----g-~pvv~tSA~tg-~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 129 ----G-VPVVPTSATEG-RGIERLKDAIRKAI 154 (591)
T ss_pred ----C-CCEEEEECCCC-CCHHHHHHHHHHHh
Confidence 1 26899999999 99999999987653
No 415
>KOG1191|consensus
Probab=99.25 E-value=4.8e-12 Score=132.75 Aligned_cols=182 Identities=24% Similarity=0.299 Sum_probs=116.8
Q ss_pred EeecCcEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecCccccc-ccccccch-HHHH
Q psy1086 173 LKLIADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG-AHRNLGMG-HQFL 249 (654)
Q Consensus 173 lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~-~~~~~~l~-~~~l 249 (654)
++.+..|+|+|+||+|||||+|+|++....| .+.|+||++.....+.+++ ..+.+.||+|+.+. ...-..++ .+..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G-~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG-VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC-eEEEEEeccccccccCChhHHHhHHHHH
Confidence 5677899999999999999999999987654 6889999999999999877 58999999999872 11111222 3455
Q ss_pred HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHH---HHhHhhcCcceeEeecccCccchHhHHHHHHHHHhc
Q psy1086 250 RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE---LYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHN 326 (654)
Q Consensus 250 ~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~---~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~ 326 (654)
+.++++|++++|+|+... ...........++.+-. .+......+|.++++||.|+...-.....
T Consensus 344 k~~~~advi~~vvda~~~------~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~------- 410 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEES------DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK------- 410 (531)
T ss_pred HHHhhcCEEEEEeccccc------ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-------
Confidence 678899999999999421 11111121122222111 11112245899999999998754111110
Q ss_pred cccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 327 l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
....++... -...+..+..+|+.++ ++++.|.+.+.+.+...
T Consensus 411 ---~~~~~~~~~---~~~~~~i~~~vs~~tk-eg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 411 ---IPVVYPSAE---GRSVFPIVVEVSCTTK-EGCERLSTALLNIVERL 452 (531)
T ss_pred ---Cceeccccc---cCcccceEEEeeechh-hhHHHHHHHHHHHHHHh
Confidence 000111100 0001123455999999 99999999988776554
No 416
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.25 E-value=5.2e-11 Score=114.13 Aligned_cols=158 Identities=22% Similarity=0.228 Sum_probs=94.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
-+|+++|.+|||||||++.+..... .++. .|.......+.+.. ..+.++|+||... +...+...+..++
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~-~t~~~~~~~~~~~~-~~l~l~D~~G~~~-------~~~~~~~~~~~ad 82 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES--VTTI-PTIGFNVETVTYKN-ISFTVWDVGGQDK-------IRPLWRHYYTNTQ 82 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC--CCcC-CccccceEEEEECC-EEEEEEECCCChh-------hHHHHHHHhCCCC
Confidence 3799999999999999999953221 1222 23333333455544 5789999999642 1122334457788
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|.+.. ..+......+..+. ..+...|.++++||.|+..... .+++.+.+... . .
T Consensus 83 ~ii~v~D~t~~------------~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~-~----~ 144 (175)
T smart00177 83 GLIFVVDSNDR------------DRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-AAEITEKLGLH-S----I 144 (175)
T ss_pred EEEEEEECCCH------------HHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCcc-c----c
Confidence 99999998731 12222222322221 1234579999999999865321 22333322210 0 0
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
. . ....++++||+++ .|+++++++|.+.+
T Consensus 145 ~-------~-~~~~~~~~Sa~~g-~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 R-------D-RNWYIQPTCATSG-DGLYEGLTWLSNNL 173 (175)
T ss_pred C-------C-CcEEEEEeeCCCC-CCHHHHHHHHHHHh
Confidence 0 0 0124678999999 99999999987653
No 417
>KOG0096|consensus
Probab=99.25 E-value=1.5e-11 Score=113.26 Aligned_cols=158 Identities=20% Similarity=0.151 Sum_probs=118.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
-+++++|..|.||||+.++.+...+.....+++......-...-+.+ -++..|||+|++...-... .|+-.+
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd-------gyyI~~ 83 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD-------GYYIQG 83 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc-------ccEEec
Confidence 47899999999999999999998887777776666655544443333 3789999999876554333 567788
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
.++++.||++ .+-....+..|..++...- .|+|+++++||.|..+.+...+-+
T Consensus 84 qcAiimFdVt---------sr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~r~~k~k~v--------------- 136 (216)
T KOG0096|consen 84 QCAIIMFDVT---------SRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKARKVKAKPV--------------- 136 (216)
T ss_pred ceeEEEeeee---------ehhhhhcchHHHHHHHHHh---cCCCeeeeccceeccccccccccc---------------
Confidence 9999999999 6677788888988886542 469999999999976543111100
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.| ...+++.++++||+++. |...=|..+++.+.
T Consensus 137 -~~---~rkknl~y~~iSaksn~-NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 137 -SF---HRKKNLQYYEISAKSNY-NFERPFLWLARKLT 169 (216)
T ss_pred -ee---eecccceeEEeeccccc-ccccchHHHhhhhc
Confidence 11 22445578999999998 99999999998774
No 418
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.24 E-value=3.5e-11 Score=114.06 Aligned_cols=158 Identities=20% Similarity=0.167 Sum_probs=93.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccc-eEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN-VGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~-~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
-+|+++|.+|+|||||++.+.+.. ....++.|+-... .-.+..++. ..+.+||+||.... .......+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 74 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF-------RAVTRSYYRG 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhcC
Confidence 368999999999999999998753 2344444332111 112333331 25789999995322 1122334556
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
++.+++|+|+++. ..++.+..+..++..+. ....|.++|.||+|+...... .++..+.....
T Consensus 75 ~~~~ilv~d~~~~---------~s~~~~~~~~~~~~~~~--~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~------ 137 (166)
T cd04122 75 AAGALMVYDITRR---------STYNHLSSWLTDARNLT--NPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN------ 137 (166)
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCcCHHHHHHHHHHc------
Confidence 7888889888731 22333333333222221 135688999999998654322 22222222210
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++.+||+++ +|+++++..+...+
T Consensus 138 -----------~-~~~~e~Sa~~~-~~i~e~f~~l~~~~ 163 (166)
T cd04122 138 -----------G-LLFLECSAKTG-ENVEDAFLETAKKI 163 (166)
T ss_pred -----------C-CEEEEEECCCC-CCHHHHHHHHHHHH
Confidence 1 26889999999 99999988776543
No 419
>KOG0074|consensus
Probab=99.24 E-value=5.1e-11 Score=104.30 Aligned_cols=160 Identities=24% Similarity=0.237 Sum_probs=111.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..|+.++|-.++||||+++.|.+.+. ..-+.|..+....+.+++.-++.+||..| +.+++..|..||.+.
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~---~hltpT~GFn~k~v~~~g~f~LnvwDiGG-------qr~IRpyWsNYyenv 86 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDP---RHLTPTNGFNTKKVEYDGTFHLNVWDIGG-------QRGIRPYWSNYYENV 86 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCCh---hhccccCCcceEEEeecCcEEEEEEecCC-------ccccchhhhhhhhcc
Confidence 36899999999999999999988754 23344667888889988866899999999 455777888999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHH-HHHHhhHhhhccC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIR-DTLHNLKDHIHKY 582 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~-~~~~~~~~~~~~~ 582 (654)
|++|+|+|.+ |+.-|+.+..-.-|+..- ......|+.|.+||.|++.+..+.+.-. -.++-+++.
T Consensus 87 d~lIyVIDS~---------D~krfeE~~~el~ELlee-eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdR---- 152 (185)
T KOG0074|consen 87 DGLIYVIDST---------DEKRFEEISEELVELLEE-EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDR---- 152 (185)
T ss_pred ceEEEEEeCC---------chHhHHHHHHHHHHHhhh-hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhc----
Confidence 9999999977 555566444333332211 1235689999999999976533322111 011112221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
...+=++||.+++ ++.+=.+.+++.
T Consensus 153 -----------swhIq~csals~e-g~~dg~~wv~sn 177 (185)
T KOG0074|consen 153 -----------SWHIQECSALSLE-GSTDGSDWVQSN 177 (185)
T ss_pred -----------eEEeeeCcccccc-CccCcchhhhcC
Confidence 1235678999998 888776666553
No 420
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.24 E-value=1.5e-11 Score=111.24 Aligned_cols=141 Identities=20% Similarity=0.332 Sum_probs=96.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|.|||+.|||||||+++|.+.... |. ..-.+.+.+ .++||||.+ .++..+.+.+.....++|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~---~~------KTq~i~~~~----~~IDTPGEy---iE~~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR---YK------KTQAIEYYD----NTIDTPGEY---IENPRFYHALIVTAQDAD 65 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC---cC------ccceeEecc----cEEECChhh---eeCHHHHHHHHHHHhhCC
Confidence 47999999999999999999985321 11 111244443 249999964 345556666667777888
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
++++|.|++... ..++. .|+. ...+|.+=|++|+|+...+...+..++++...
T Consensus 66 ~V~ll~dat~~~-----------~~~pP------~fa~-~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a--------- 118 (143)
T PF10662_consen 66 VVLLLQDATEPR-----------SVFPP------GFAS-MFNKPVIGVITKIDLPSDDANIERAKKWLKNA--------- 118 (143)
T ss_pred EEEEEecCCCCC-----------ccCCc------hhhc-ccCCCEEEEEECccCccchhhHHHHHHHHHHc---------
Confidence 999999987421 00111 1222 35799999999999985444555555555431
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
++.++|.+|+.++ +|+++|.+.|.
T Consensus 119 --------G~~~if~vS~~~~-eGi~eL~~~L~ 142 (143)
T PF10662_consen 119 --------GVKEIFEVSAVTG-EGIEELKDYLE 142 (143)
T ss_pred --------CCCCeEEEECCCC-cCHHHHHHHHh
Confidence 2347899999999 99999998875
No 421
>PLN03110 Rab GTPase; Provisional
Probab=99.24 E-value=3.4e-11 Score=119.48 Aligned_cols=162 Identities=19% Similarity=0.101 Sum_probs=97.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|++||.+|+|||||++.+.+........|....+.....+.+++. ..+.+||+||... +......++..+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 85 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYYRGA 85 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhCCC
Confidence 37999999999999999999886544333343333333445555442 2578999999542 112223344556
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++|+|... ...++.+..+...+.... -...|.+++.||+|+........+....+...
T Consensus 86 ~~~ilv~d~~~---------~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-------- 146 (216)
T PLN03110 86 VGALLVYDITK---------RQTFDNVQRWLRELRDHA--DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-------- 146 (216)
T ss_pred CEEEEEEECCC---------hHHHHHHHHHHHHHHHhC--CCCCeEEEEEEChhcccccCCCHHHHHHHHHH--------
Confidence 77788888763 122333332222222211 13578899999999864332222222222110
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.+ ..++.+||+++ .+++++++.+...+..
T Consensus 147 --------~~-~~~~e~SA~~g-~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 147 --------EG-LSFLETSALEA-TNVEKAFQTILLEIYH 175 (216)
T ss_pred --------cC-CEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 01 26899999999 9999999998776644
No 422
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.24 E-value=4.5e-11 Score=112.83 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=93.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+...... ..++.|........+..++. ..+.+||+||...... + .......++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ad 74 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS----M---RDLYIKNGQ 74 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccc----h---HHHHHhhCC
Confidence 6899999999999999888764332 23333333333344555432 2467899999643321 1 222345678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++|+|+++ ...+..+.....++.... .....|.++|.||+|+.............+..
T Consensus 75 ~~i~v~d~~~---------~~s~~~~~~~~~~~~~~~-~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~---------- 134 (163)
T cd04176 75 GFIVVYSLVN---------QQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAE---------- 134 (163)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcCccCHHHHHHHHH----------
Confidence 8888888863 123333333333333221 12578999999999985422111111111110
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
..+ .+++++||+++ .++.+++..+.+.
T Consensus 135 ------~~~-~~~~~~Sa~~~-~~v~~l~~~l~~~ 161 (163)
T cd04176 135 ------EWG-CPFMETSAKSK-TMVNELFAEIVRQ 161 (163)
T ss_pred ------HhC-CEEEEecCCCC-CCHHHHHHHHHHh
Confidence 001 25789999999 9999999887653
No 423
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.23 E-value=4.4e-11 Score=117.06 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=96.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccc-cccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTT-IKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tT-l~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.|+++|.+|+|||||++.+..... ...|+.|. .....-.+.+++. ..+.+||++|...+. ......+..+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~-------~l~~~y~~~a 73 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYYRSA 73 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH-------HHHHHHhcCC
Confidence 488999999999999999986432 23343322 2222334555442 357899999964321 1223345567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++|+|+++ ...++.+..+...+..+. ....|.++|.||+|+....+......+.+...
T Consensus 74 d~iIlVfDvtd---------~~Sf~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~-------- 134 (202)
T cd04120 74 KGIILVYDITK---------KETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREISRQQGEKFAQQ-------- 134 (202)
T ss_pred CEEEEEEECcC---------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHh--------
Confidence 88899999874 234444443333333321 24578899999999864332222211111110
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
..+ ..++.+||+++ .|+++++.++.+.+
T Consensus 135 -------~~~-~~~~etSAktg-~gV~e~F~~l~~~~ 162 (202)
T cd04120 135 -------ITG-MRFCEASAKDN-FNVDEIFLKLVDDI 162 (202)
T ss_pred -------cCC-CEEEEecCCCC-CCHHHHHHHHHHHH
Confidence 001 25789999999 99999999987655
No 424
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.23 E-value=2e-10 Score=119.53 Aligned_cols=138 Identities=17% Similarity=0.113 Sum_probs=82.1
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
.+.++||||.... ....+..+|.++++.+.. +.+.+......+ ..+|.++|
T Consensus 128 D~viidT~G~~~~----------e~~i~~~aD~i~vv~~~~------------~~~el~~~~~~l-------~~~~~ivv 178 (300)
T TIGR00750 128 DVIIVETVGVGQS----------EVDIANMADTFVVVTIPG------------TGDDLQGIKAGL-------MEIADIYV 178 (300)
T ss_pred CEEEEeCCCCchh----------hhHHHHhhceEEEEecCC------------ccHHHHHHHHHH-------hhhccEEE
Confidence 6899999995321 113456678888775433 112222222222 35788999
Q ss_pred EeCCCccChHHHHHHHHHHH-HhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHhhHhH
Q psy1086 553 VNKMDVEGAQEIYDGIRDTL-HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMV 631 (654)
Q Consensus 553 ~NK~Dl~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~~~~~ 631 (654)
+||+|+........ ....+ ..+....... ..+..+++++||++|+ ||++|++.+.+..........-..
T Consensus 179 ~NK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~--------~~~~~~v~~iSA~~g~-Gi~~L~~~i~~~~~~~~~~~~l~~ 248 (300)
T TIGR00750 179 VNKADGEGATNVTI-ARLMLALALEEIRRRE--------DGWRPPVLTTSAVEGR-GIDELWDAIEEHKTFLTASGLLQE 248 (300)
T ss_pred EEcccccchhHHHH-HHHHHHHHHhhccccc--------cCCCCCEEEEEccCCC-CHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999986543111 11111 1111111100 0112368999999999 999999999998765543333345
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy1086 632 DRELELVKKLKSSLREHQ 649 (654)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~ 649 (654)
.|++..+++.++.+++..
T Consensus 249 ~R~~~~l~~a~~~l~~~l 266 (300)
T TIGR00750 249 KRRQRSVEWLKKLVEEEV 266 (300)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888888877776644
No 425
>KOG1486|consensus
Probab=99.23 E-value=3e-10 Score=109.13 Aligned_cols=92 Identities=38% Similarity=0.624 Sum_probs=83.8
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
...||+++|.+.+|||||+..+....-...++.+||..+..+.+.+++. .++++|.||++++.+...+-++++....|.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga-~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA-NIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc-eEEEecCcccccccccCCCCCceEEEEeec
Confidence 3469999999999999999999998777788999999999999999985 899999999999999988888888788899
Q ss_pred ccEEEEEEeCCCc
Q psy1086 503 TKLIAMIVDVNGF 515 (654)
Q Consensus 503 a~~~ilV~D~~~~ 515 (654)
||.++.|+|++..
T Consensus 140 aDlilMvLDatk~ 152 (364)
T KOG1486|consen 140 ADLILMVLDATKS 152 (364)
T ss_pred ccEEEEEecCCcc
Confidence 9999999999843
No 426
>KOG1144|consensus
Probab=99.22 E-value=1.1e-10 Score=126.84 Aligned_cols=178 Identities=19% Similarity=0.243 Sum_probs=116.0
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCccccccee--------------------EEEEeCCCceEEEEecCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV--------------------GVITFDDFRKMSVADLPGL 482 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~--------------------~~v~~~~~~~~~i~DTpG~ 482 (654)
+.+-|+++|+...|||-|+..+.+.++......++|.-.-. ..+.++ -+.++||||.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP---g~lvIdtpgh 550 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP---GLLVIDTPGH 550 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC---eeEEecCCCc
Confidence 44678999999999999999999877766554444422111 112222 3789999995
Q ss_pred CCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh-
Q psy1086 483 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA- 561 (654)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~- 561 (654)
+. |.+...+....||.+|+|+|+.+ |+..| ..+++..+. ..+.|+||++||+|.+-.
T Consensus 551 Es-------FtnlRsrgsslC~~aIlvvdImh---Glepq---tiESi~lLR---------~rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 551 ES-------FTNLRSRGSSLCDLAILVVDIMH---GLEPQ---TIESINLLR---------MRKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred hh-------hhhhhhccccccceEEEEeehhc---cCCcc---hhHHHHHHH---------hcCCCeEEeehhhhhhccc
Confidence 44 44444456678999999999985 44444 344443221 246899999999997521
Q ss_pred ----------------HHHHHHHHHHHHhhHhhhccC----CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 562 ----------------QEIYDGIRDTLHNLKDHIHKY----PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 562 ----------------~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+.+..++...+..+.-.+... .-.|.+.....+++++|+||.+|+ ||.+|+-.|.++-+
T Consensus 609 k~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe-GipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 609 KSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE-GIPDLLLLLVQLTQ 687 (1064)
T ss_pred ccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC-CcHHHHHHHHHHHH
Confidence 112222222222221111111 113566777888999999999999 99999999988877
Q ss_pred HHHHH
Q psy1086 622 LLAEE 626 (654)
Q Consensus 622 ~~~~~ 626 (654)
....+
T Consensus 688 k~m~~ 692 (1064)
T KOG1144|consen 688 KTMVE 692 (1064)
T ss_pred HHHHH
Confidence 65443
No 427
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.22 E-value=5.6e-11 Score=116.28 Aligned_cols=135 Identities=24% Similarity=0.310 Sum_probs=95.9
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-------------------c
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------------K 225 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-------------------~ 225 (654)
...+|+|++..|+.+|++|+|||||||+|++|+|. +.|..|.+.+++.. .
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-----------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ 107 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-----------LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKL 107 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-----------cccCCCeEEecCcCcchhHHHHHHHHHHHhhhhh
Confidence 45799999999999999999999999999999994 66777777765432 2
Q ss_pred EEEEecCcccccccccccchHH-----HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcc
Q psy1086 226 MSVADLPGLIEGAHRNLGMGHQ-----FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP 300 (654)
Q Consensus 226 ~~i~D~PGl~~~~~~~~~l~~~-----~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P 300 (654)
=..||+|-+. . ..+... .....++.+.+..++|+.++ .+.++..+|.+++.+..++..|+.+|
T Consensus 108 ql~Wdlp~~d-s----~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~-------lk~~vr~LSlGqRmraeLaaaLLh~p 175 (325)
T COG4586 108 QLWWDLPALD-S----LEVLKLIYEIPDDEFAERLDFLTEILDLEGF-------LKWPVRKLSLGQRMRAELAAALLHPP 175 (325)
T ss_pred eeeeechhhh-h----HHHHHHHHhCCHHHHHHHHHHHHHHhcchhh-------hhhhhhhccchHHHHHHHHHHhcCCC
Confidence 2578888321 1 111111 11223556677778888654 26788999999999999999999999
Q ss_pred eeEeec----ccCccchHhHHHHHHH
Q psy1086 301 IILLVN----KMDVEGAQEIYDGIRD 322 (654)
Q Consensus 301 ~ilvlN----K~D~~~~~~~~~~l~~ 322 (654)
.++.+. -+|........+.+++
T Consensus 176 ~VLfLDEpTvgLDV~aq~~ir~Flke 201 (325)
T COG4586 176 KVLFLDEPTVGLDVNAQANIREFLKE 201 (325)
T ss_pred cEEEecCCccCcchhHHHHHHHHHHH
Confidence 999983 3554444443333333
No 428
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.22 E-value=7e-11 Score=112.28 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=92.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+|+|.||||||||++++.+.. ....|+.|+.....-.+.+++. ..+.+||+||...... +.+ ..+..++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~---~~~~~~~ 74 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV-FIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA----MRE---LYIKSGQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh----hhH---HHHhhCC
Confidence 58999999999999999998643 3344444443332233444432 2568999999653321 112 2233455
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|..+ ...++.......++.... .....|.+++.||.|+....... +...+....
T Consensus 75 ~~vlv~~~~~---------~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--------- 135 (168)
T cd04177 75 GFLLVYSVTS---------EASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ--------- 135 (168)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHH---------
Confidence 6666777653 223333333333332221 12468999999999986433211 111111111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.+..+++.+||+++ .+++++++.+...
T Consensus 136 --------~~~~~~~~~SA~~~-~~i~~~f~~i~~~ 162 (168)
T cd04177 136 --------WGNVPFYETSARKR-TNVDEVFIDLVRQ 162 (168)
T ss_pred --------cCCceEEEeeCCCC-CCHHHHHHHHHHH
Confidence 01125899999999 9999999988754
No 429
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.22 E-value=4.8e-11 Score=114.69 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=94.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+|+|.+|||||||++.+++... +..++.|+.......+.+... ..+.++|+||..+.. .........++
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~ 74 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS-------ILPQKYSIGIH 74 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH-------HHHHHHHhhCC
Confidence 689999999999999999997543 333444444433444554431 246899999964321 11122334455
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++++|.+. ...+..+......+.... .....|.+++.||+|+...... .+.........
T Consensus 75 ~~i~v~d~~~---------~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-------- 136 (180)
T cd04137 75 GYILVYSVTS---------RKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESW-------- 136 (180)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHc--------
Confidence 6667777653 122333333333322221 1245799999999998643211 11112111110
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++++||+++ .++.+++.++.+.+..
T Consensus 137 ---------~-~~~~~~Sa~~~-~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 137 ---------G-AAFLESSAREN-ENVEEAFELLIEEIEK 164 (180)
T ss_pred ---------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 0 25889999999 9999999999876543
No 430
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.22 E-value=7.1e-11 Score=114.96 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=92.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccc-eEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN-VGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~-~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|+|||||++.+.+.......|..|.-... .-.+..++. ..+.+||+||...... +. ......+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~~~~ 74 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA----MS---RIYYRGA 74 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh----hh---HhhcCCC
Confidence 6899999999999999999986554334443332211 123444432 1356999999643211 11 1223457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-----HHHHHHHHhccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-----YDGIRDTLHNLKDH 330 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-----~~~l~~~~~~l~~~ 330 (654)
+.+++|+|.+.. ..++.+. ..+..+.......|.++|.||.|+...... .+++.+.....
T Consensus 75 d~iilv~d~~~~---------~s~~~~~---~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~--- 139 (193)
T cd04118 75 KAAIVCYDLTDS---------SSFERAK---FWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI--- 139 (193)
T ss_pred CEEEEEEECCCH---------HHHHHHH---HHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc---
Confidence 788888888631 2222222 222222222235799999999998543210 11111111110
Q ss_pred cccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++.+||+++ .+++++++.+.+.+.
T Consensus 140 --------------~-~~~~~~Sa~~~-~gv~~l~~~i~~~~~ 166 (193)
T cd04118 140 --------------K-AQHFETSSKTG-QNVDELFQKVAEDFV 166 (193)
T ss_pred --------------C-CeEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 0 25789999999 999999999887653
No 431
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.22 E-value=9.8e-11 Score=112.30 Aligned_cols=154 Identities=20% Similarity=0.215 Sum_probs=92.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCC------CC---------CccccccceEEEEe---C-CCccEEEEecCcccccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIA------SY---------PFTTIKPNVGVITF---D-DFRKMSVADLPGLIEGA 238 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~------~~---------~~tTl~p~~G~v~~---~-~~~~~~i~D~PGl~~~~ 238 (654)
.|++||.+|+|||||++++.+....+. .| ..+|..+..-.+.+ + ....+.++||||..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 589999999999999999987532221 11 12233333323333 1 2235789999997542
Q ss_pred cccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh--H
Q psy1086 239 HRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE--I 316 (654)
Q Consensus 239 ~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~--~ 316 (654)
.....+.+..+|.+++|+|+... ....++..+. .+ . -...|.++++||+|+..... .
T Consensus 81 ------~~~~~~~~~~ad~~i~v~D~~~~---------~~~~~~~~~~-~~---~--~~~~~iiiv~NK~Dl~~~~~~~~ 139 (179)
T cd01890 81 ------SYEVSRSLAACEGALLLVDATQG---------VEAQTLANFY-LA---L--ENNLEIIPVINKIDLPSADPERV 139 (179)
T ss_pred ------HHHHHHHHHhcCeEEEEEECCCC---------ccHhhHHHHH-HH---H--HcCCCEEEEEECCCCCcCCHHHH
Confidence 33445567788999999998631 0111221111 11 1 14678999999999864321 1
Q ss_pred HHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 317 YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 317 ~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+.+.+.+. + ....++++||+++ .+++++++.+.+.+
T Consensus 140 ~~~~~~~~~--------~----------~~~~~~~~Sa~~g-~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 KQQIEDVLG--------L----------DPSEAILVSAKTG-LGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHhC--------C----------CcccEEEeeccCC-CCHHHHHHHHHhhC
Confidence 122221111 0 0124899999999 99999999887654
No 432
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.22 E-value=5e-11 Score=112.53 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=91.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccce--EEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV--GVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~--G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|+++|++|+|||||++.+.+.... ..| ..|..+.. -.+..++. ..+.+||+||...... ........
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~~~ 72 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSH-ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYYRR 72 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCC-CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHhcC
Confidence 5899999999999999988764332 111 22333222 23444431 2468999999532211 12223445
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++.++++.|+.+ +..++.+..+..++..+. ....|.++|.||.|+.............+...
T Consensus 73 ~~~~i~v~d~~~---------~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~------- 134 (161)
T cd04117 73 AQGIFLVYDISS---------ERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQKRQVGDEQGNKLAKE------- 134 (161)
T ss_pred CcEEEEEEECCC---------HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCCCHHHHHHHHHH-------
Confidence 678888888763 223344433333333222 13568899999999865432211111111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.+ .+++++||+++ .++++++..|.+.
T Consensus 135 ---------~~-~~~~e~Sa~~~-~~v~~~f~~l~~~ 160 (161)
T cd04117 135 ---------YG-MDFFETSACTN-SNIKESFTRLTEL 160 (161)
T ss_pred ---------cC-CEEEEEeCCCC-CCHHHHHHHHHhh
Confidence 00 25799999999 9999999988653
No 433
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.22 E-value=5.5e-11 Score=114.21 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=90.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-----------CccEEEEecCcccccccccccch
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-----------FRKMSVADLPGLIEGAHRNLGMG 245 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-----------~~~~~i~D~PGl~~~~~~~~~l~ 245 (654)
-+|+++|.+|||||||++.+.+....-...|....+.....+.+.. ...+.+||+||.... .
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~ 77 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF-------R 77 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------H
Confidence 3689999999999999999987533211112111112222233321 135789999995321 1
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchHhH-HHHHHH
Q psy1086 246 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQEI-YDGIRD 322 (654)
Q Consensus 246 ~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~~~-~~~l~~ 322 (654)
......+..++.+++|.|+.. . .++..+...+..+... ....|.++|.||+|+...... .+...+
T Consensus 78 ~~~~~~~~~~~~~i~v~d~~~---------~---~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~ 145 (180)
T cd04127 78 SLTTAFFRDAMGFLLIFDLTN---------E---QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA 145 (180)
T ss_pred HHHHHHhCCCCEEEEEEECCC---------H---HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence 112233455777888888763 1 2233333333222221 135678999999998643221 122222
Q ss_pred HHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 323 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 323 ~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+.... + .+++.+||+++ .+++++++.+.+.+
T Consensus 146 ~~~~~-----------------~-~~~~e~Sak~~-~~v~~l~~~l~~~~ 176 (180)
T cd04127 146 LADKY-----------------G-IPYFETSAATG-TNVEKAVERLLDLV 176 (180)
T ss_pred HHHHc-----------------C-CeEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 22211 1 15799999999 99999999987644
No 434
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.22 E-value=9.6e-11 Score=111.70 Aligned_cols=157 Identities=11% Similarity=0.083 Sum_probs=92.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccc-cccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTT-IKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tT-l~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|++||.+|||||||++.+.+... ...|..|. .....-.+.+++ ...+.+||+||..... .....++..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a 73 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK-------CIASTYYRGA 73 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------hhHHHHhcCC
Confidence 689999999999999999998533 23343222 222223343433 2358899999964321 1223345567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh--cCcceeEeecccCccchHhH--HH-HHHHHHhccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL--LEKPIILLVNKMDVEGAQEI--YD-GIRDTLHNLKDH 330 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l--~~~P~ilvlNK~D~~~~~~~--~~-~l~~~~~~l~~~ 330 (654)
+++++|+|+.+. ..+......+..+.... ...|.++|.||.|+...... .+ ...+....+
T Consensus 74 d~~ilv~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~--- 138 (170)
T cd04108 74 QAIIIVFDLTDV------------ASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM--- 138 (170)
T ss_pred CEEEEEEECcCH------------HHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc---
Confidence 888888888631 22333333333222211 12467889999998543221 11 111111110
Q ss_pred cccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ .+++.+||+++ .+++++++.+.+.+.
T Consensus 139 --------------~-~~~~e~Sa~~g-~~v~~lf~~l~~~~~ 165 (170)
T cd04108 139 --------------Q-AEYWSVSALSG-ENVREFFFRVAALTF 165 (170)
T ss_pred --------------C-CeEEEEECCCC-CCHHHHHHHHHHHHH
Confidence 1 25789999999 999999999877654
No 435
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.22 E-value=2.8e-11 Score=118.85 Aligned_cols=160 Identities=22% Similarity=0.217 Sum_probs=90.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCC-CC--CCccccccceEEEEeC---------------------------C-----
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKI-AS--YPFTTIKPNVGVITFD---------------------------D----- 222 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~--~~~tTl~p~~G~v~~~---------------------------~----- 222 (654)
.||++|.+|+|||||+.+|++..... .. .-..|.........+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 48999999999999999998862210 00 0000111111111110 1
Q ss_pred CccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCccee
Q psy1086 223 FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 302 (654)
Q Consensus 223 ~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~i 302 (654)
..++.++|+||.. .+...++..+..+|.+++|+|+.... ........+. ....+..+|.+
T Consensus 82 ~~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~-----~~~~t~~~l~--------~~~~~~~~~ii 141 (203)
T cd01888 82 VRHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPC-----PQPQTSEHLA--------ALEIMGLKHII 141 (203)
T ss_pred ccEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCC-----CCcchHHHHH--------HHHHcCCCcEE
Confidence 1468999999942 24445566666678889999986310 0011111111 11112235788
Q ss_pred EeecccCccchHhHH---HHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 303 LLVNKMDVEGAQEIY---DGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 303 lvlNK~D~~~~~~~~---~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+++||+|+....+.. +.+.+.+.... ....+++++||+++ .|+++|++.+.+.++
T Consensus 142 ivvNK~Dl~~~~~~~~~~~~i~~~~~~~~---------------~~~~~i~~vSA~~g-~gi~~L~~~l~~~l~ 199 (203)
T cd01888 142 IVQNKIDLVKEEQALENYEQIKKFVKGTI---------------AENAPIIPISAQLK-YNIDVLLEYIVKKIP 199 (203)
T ss_pred EEEEchhccCHHHHHHHHHHHHHHHhccc---------------cCCCcEEEEeCCCC-CCHHHHHHHHHHhCC
Confidence 899999997643322 22222221100 00136899999999 999999999876553
No 436
>KOG0072|consensus
Probab=99.22 E-value=7.8e-11 Score=103.53 Aligned_cols=156 Identities=25% Similarity=0.331 Sum_probs=106.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.++.++|-.|+||||++-++--.+. +...|+ ..+....+.+.+- ++++||..|+. .++.-|+-|+...+
T Consensus 19 ~rililgldGaGkttIlyrlqvgev-vttkPt--igfnve~v~yKNL-k~~vwdLggqt-------SirPyWRcYy~dt~ 87 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEV-VTTKPT--IGFNVETVPYKNL-KFQVWDLGGQT-------SIRPYWRCYYADTD 87 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCcc-cccCCC--CCcCccccccccc-cceeeEccCcc-------cccHHHHHHhcccc
Confidence 5899999999999999876643322 223343 4456667777774 89999999953 35667778899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHH--HHHHHHHHhhcccCCCCEEEEEeCCCccChH---HHHHHHHHHHHhhHhhh
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVL--LLNKELELYKMNLLEKPIILLVNKMDVEGAQ---EIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~--~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~---~v~~~~~~~~~~~~~~~ 579 (654)
.+|+|+|.++ .++-+..... .+..|- ...+..+++++||+|..... ++...+. +.++++..
T Consensus 88 avIyVVDssd-------~dris~a~~el~~mL~E~-----eLq~a~llv~anKqD~~~~~t~~E~~~~L~--l~~Lk~r~ 153 (182)
T KOG0072|consen 88 AVIYVVDSSD-------RDRISIAGVELYSMLQEE-----ELQHAKLLVFANKQDYSGALTRSEVLKMLG--LQKLKDRI 153 (182)
T ss_pred eEEEEEeccc-------hhhhhhhHHHHHHHhccH-----hhcCceEEEEeccccchhhhhHHHHHHHhC--hHHHhhhe
Confidence 9999999983 2444333322 122211 22357788999999986543 2222222 33444443
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+|.+||.+|+ |+++..+.+.+.++
T Consensus 154 ---------------~~Iv~tSA~kg~-Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 154 ---------------WQIVKTSAVKGE-GLDPAMDWLQRPLK 179 (182)
T ss_pred ---------------eEEEeecccccc-CCcHHHHHHHHHHh
Confidence 248999999999 99999999988765
No 437
>PTZ00369 Ras-like protein; Provisional
Probab=99.21 E-value=8.2e-11 Score=114.20 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=95.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|||||||++.+.+... ...|..|.-......+.+++. ..+.+|||||..+... ........+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------l~~~~~~~~ 77 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF-IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA-------MRDQYMRTG 77 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh-------hHHHHhhcC
Confidence 3799999999999999999987532 223333332222223334432 2467899999643221 122344567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHH-HHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYD-GIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~-~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|.++ ...++.+.....++..+.. ....|.+++.||+|+........ +..+.....
T Consensus 78 d~iilv~D~s~---------~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~------- 140 (189)
T PTZ00369 78 QGFLCVYSITS---------RSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSF------- 140 (189)
T ss_pred CEEEEEEECCC---------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHh-------
Confidence 88888888874 1233444444444433221 13568899999999854321111 111111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++.+||+++ .|+++++.++.+.+..
T Consensus 141 ----------~-~~~~e~Sak~~-~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 141 ----------G-IPFLETSAKQR-VNVDEAFYELVREIRK 168 (189)
T ss_pred ----------C-CEEEEeeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 25899999999 9999999998766543
No 438
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.21 E-value=4.5e-10 Score=121.10 Aligned_cols=120 Identities=19% Similarity=0.223 Sum_probs=75.2
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE--------------EEEecC
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM--------------SVADLP 232 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~--------------~i~D~P 232 (654)
++++|+++.|+..+|+|.||||||||+++|+| ...|+.|.+.+++. .+ ++..-+
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsG-----------v~~p~~G~I~~~G~-~~~~~sp~~A~~~GI~~V~QEl 92 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSG-----------VYPPDSGEILIDGK-PVAFSSPRDALAAGIATVHQEL 92 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhC-----------cccCCCceEEECCE-EccCCCHHHHHhCCcEEEeech
Confidence 35556666666799999999999999999999 46688888888752 11 111111
Q ss_pred ccccc--ccccccchHHH---------HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcce
Q psy1086 233 GLIEG--AHRNLGMGHQF---------LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPI 301 (654)
Q Consensus 233 Gl~~~--~~~~~~l~~~~---------l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ 301 (654)
.+... ..+|..++++. ....+++..++--+... .+.+.++.+++..++|+..+++++...+.
T Consensus 93 ~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v~~LsiaqrQ~VeIArAl~~~ar 165 (500)
T COG1129 93 SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLVGDLSIAQRQMVEIARALSFDAR 165 (500)
T ss_pred hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhhhhCCHHHHHHHHHHHHHhcCCC
Confidence 12211 11222222111 11223333333322221 22477889999999999999999999999
Q ss_pred eEee
Q psy1086 302 ILLV 305 (654)
Q Consensus 302 ilvl 305 (654)
++++
T Consensus 166 llIl 169 (500)
T COG1129 166 VLIL 169 (500)
T ss_pred EEEE
Confidence 9986
No 439
>PLN03108 Rab family protein; Provisional
Probab=99.21 E-value=7.3e-11 Score=116.57 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=94.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+|+|++|||||||++.+++........|........+.+.+++. ..+.+||+||..... ......+..+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~-------~~~~~~~~~a 79 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRGA 79 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhccC
Confidence 36899999999999999999986443333332233333445555542 247899999954211 1122334456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|.... ..+..+..+..++..+. ....|.+++.||+|+...... .++..+....
T Consensus 80 d~~vlv~D~~~~---------~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-------- 140 (210)
T PLN03108 80 AGALLVYDITRR---------ETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-------- 140 (210)
T ss_pred CEEEEEEECCcH---------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccCCCHHHHHHHHHH--------
Confidence 677888888631 12222222222222211 135788999999998653221 1222222211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ ..++.+||+++ .++++++.++.+.+
T Consensus 141 ---------~~-~~~~e~Sa~~~-~~v~e~f~~l~~~~ 167 (210)
T PLN03108 141 ---------HG-LIFMEASAKTA-QNVEEAFIKTAAKI 167 (210)
T ss_pred ---------cC-CEEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 01 25899999999 99999988876554
No 440
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.21 E-value=7.6e-11 Score=111.71 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=92.6
Q ss_pred EEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHHH
Q psy1086 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLI 258 (654)
Q Consensus 179 VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~i 258 (654)
|+++|.+|||||||++.+.+.... ..|..| .....-.+...+ ..+.+||+||... +...+..++..++.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~pt-~g~~~~~i~~~~-~~l~i~Dt~G~~~-------~~~~~~~~~~~ad~i 71 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESVVPT-TGFNSVAIPTQD-AIMELLEIGGSQN-------LRKYWKRYLSGSQGL 71 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-cccccc-CCcceEEEeeCC-eEEEEEECCCCcc-------hhHHHHHHHhhCCEE
Confidence 789999999999999999975432 333322 222222343333 4789999999642 223344567888999
Q ss_pred HHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCcc
Q psy1086 259 AMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEF 338 (654)
Q Consensus 259 l~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~ 338 (654)
++|+|.++. ..+.....++..+.......|.++|.||.|+..... .+.+.+.++. .. +..+
T Consensus 72 i~V~D~t~~------------~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~-~~----~~~~- 132 (164)
T cd04162 72 IFVVDSADS------------ERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS-VQEIHKELEL-EP----IARG- 132 (164)
T ss_pred EEEEECCCH------------HHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC-HHHHHHHhCC-hh----hcCC-
Confidence 999998731 123333333333332225789999999999865432 2233222211 11 1000
Q ss_pred chhhhcccceEEEeeccc------CccchHHHHHHHH
Q psy1086 339 QPEKVIKFQSILPISAKT------NSTDVNDAKLKIR 369 (654)
Q Consensus 339 ~~~~~~~~~~v~~iSA~~------~~~~i~~L~~~i~ 369 (654)
.+ ..++.+||++ + +++.++++.+.
T Consensus 133 -----~~-~~~~~~Sa~~~~s~~~~-~~v~~~~~~~~ 162 (164)
T cd04162 133 -----RR-WILQGTSLDDDGSPSRM-EAVKDLLSQLI 162 (164)
T ss_pred -----Cc-eEEEEeeecCCCChhHH-HHHHHHHHHHh
Confidence 01 2467777776 8 88888887664
No 441
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.21 E-value=8.5e-11 Score=118.73 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=99.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+.+... ...|..|+.+.....+.+++. ..+.+|||+|...... + ....+..++
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~----~---~~~~~~~ad 73 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA----M---RRLSILTGD 73 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH----H---HHHHhccCC
Confidence 689999999999999999976432 235555554444444555442 2467999999643211 1 111234567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH-------hhcCcceeEeecccCccchH-hHHHHHHHHHhccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-------NLLEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNLK 328 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~-------~l~~~P~ilvlNK~D~~~~~-~~~~~l~~~~~~l~ 328 (654)
++++|+|++. ...++.+..+..++..... .....|.+++.||+|+.... ...+++.+.+...
T Consensus 74 ~iIlVfdv~~---------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~- 143 (247)
T cd04143 74 VFILVFSLDN---------RESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD- 143 (247)
T ss_pred EEEEEEeCCC---------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc-
Confidence 7888888863 2344555555555543321 23468999999999986421 1223333332210
Q ss_pred cccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 329 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 329 ~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
....++.+||+++ .+++++++.+.+..
T Consensus 144 ----------------~~~~~~evSAktg-~gI~elf~~L~~~~ 170 (247)
T cd04143 144 ----------------ENCAYFEVSAKKN-SNLDEMFRALFSLA 170 (247)
T ss_pred ----------------CCCEEEEEeCCCC-CCHHHHHHHHHHHh
Confidence 0025899999999 99999999987643
No 442
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.21 E-value=8.9e-11 Score=111.35 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=90.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeC-CCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD-DFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~-~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+.+... ...+|.+ .....-...+. ....+.++|+||.... ...+...+..++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ad 72 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQD-------RANLAAEIRKAN 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhh-------hHHHhhhcccCC
Confidence 689999999999999999987543 2234432 21111111222 2236789999996421 112333456677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHH-HHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~-~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l~~~i~ 332 (654)
.+++|+|+.. ...+..+. .+...+..+ ....|.+++.||+|+...... .+.+........
T Consensus 73 ~~ilv~d~~~---------~~s~~~~~~~~~~~i~~~---~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---- 136 (166)
T cd01893 73 VICLVYSVDR---------PSTLERIRTKWLPLIRRL---GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR---- 136 (166)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHHh---CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHh----
Confidence 7888888763 12222221 122222222 136899999999999754321 111111111100
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
....++.+||+++ .+++++++.+.+.+
T Consensus 137 ------------~~~~~~e~Sa~~~-~~v~~lf~~~~~~~ 163 (166)
T cd01893 137 ------------EIETCVECSAKTL-INVSEVFYYAQKAV 163 (166)
T ss_pred ------------cccEEEEeccccc-cCHHHHHHHHHHHh
Confidence 0125889999999 99999999887543
No 443
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.20 E-value=2.1e-11 Score=120.24 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=90.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCC-------------------------------CCCccccccceEEEEeCCCccE
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIA-------------------------------SYPFTTIKPNVGVITFDDFRKM 226 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~-------------------------------~~~~tTl~p~~G~v~~~~~~~~ 226 (654)
+|+|||.+|||||||++.|....-.+. ....+|+++....+.+.+ .++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~-~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK-RKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC-ceE
Confidence 589999999999999999975432222 115667777777777765 589
Q ss_pred EEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeec
Q psy1086 227 SVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVN 306 (654)
Q Consensus 227 ~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlN 306 (654)
.++||||..+ +...+...+..+|.+++|+|+... .. .. ..+...+...+..++.++++|
T Consensus 80 ~liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~~-------~~---~~----~~~~~~~~~~~~~~~iIvviN 138 (208)
T cd04166 80 IIADTPGHEQ-------YTRNMVTGASTADLAILLVDARKG-------VL---EQ----TRRHSYILSLLGIRHVVVAVN 138 (208)
T ss_pred EEEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCCC-------cc---Hh----HHHHHHHHHHcCCCcEEEEEE
Confidence 9999999632 223344556778899999998631 00 10 011111222222245667899
Q ss_pred ccCccchH-hHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHH
Q psy1086 307 KMDVEGAQ-EIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDA 364 (654)
Q Consensus 307 K~D~~~~~-~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L 364 (654)
|+|+.... .....+...+..+.. .+. ....+++++||.++ .|+.+.
T Consensus 139 K~D~~~~~~~~~~~i~~~~~~~~~---~~~--------~~~~~ii~iSA~~g-~ni~~~ 185 (208)
T cd04166 139 KMDLVDYSEEVFEEIVADYLAFAA---KLG--------IEDITFIPISALDG-DNVVSR 185 (208)
T ss_pred chhcccCCHHHHHHHHHHHHHHHH---HcC--------CCCceEEEEeCCCC-CCCccC
Confidence 99986422 112222222221100 000 00125899999999 888754
No 444
>PLN03118 Rab family protein; Provisional
Probab=99.20 E-value=9e-11 Score=116.07 Aligned_cols=160 Identities=20% Similarity=0.168 Sum_probs=95.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCcc-ccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFT-TIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~t-Tl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
-+|++||.+|||||||++++++... ..+..+ ......-.+.+++. ..+.++|+||...+.. .....+..
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~~ 85 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV--EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT-------LTSSYYRN 85 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC--CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHhc
Confidence 3799999999999999999987543 222211 11222223444432 3578999999643221 12334556
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHH-HHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLL-NKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIH 332 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~-~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~ 332 (654)
++.+++|+|.+. ...+..+... ..++..+. .....|.++|.||+|+....... +.........
T Consensus 86 ~d~~vlv~D~~~---------~~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~----- 150 (211)
T PLN03118 86 AQGIILVYDVTR---------RETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSREEGMALAKEH----- 150 (211)
T ss_pred CCEEEEEEECCC---------HHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCHHHHHHHHHHc-----
Confidence 788888988863 1233333322 22232222 12456889999999986432221 1111111110
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+.+.+..
T Consensus 151 ------------~-~~~~e~SAk~~-~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 151 ------------G-CLFLECSAKTR-ENVEQCFEELALKIME 178 (211)
T ss_pred ------------C-CEEEEEeCCCC-CCHHHHHHHHHHHHHh
Confidence 1 25789999999 9999999999876643
No 445
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.20 E-value=9.1e-11 Score=115.96 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=93.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC--ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~--~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|+|||||++.+++........|..+.+...-.+.+.++ ..+.++|+||.... .......+..+
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 76 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-------RSITRSYYRNS 76 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-------HHHHHHHhcCC
Confidence 6899999999999999999975543322222222222223333322 25789999995321 11122344557
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++|+|++.. ..+..+..+..++..... ....|.+++.||.|+.............+..
T Consensus 77 d~iilv~D~~~~---------~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~--------- 137 (211)
T cd04111 77 VGVLLVFDITNR---------ESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAK--------- 137 (211)
T ss_pred cEEEEEEECCCH---------HHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHH---------
Confidence 788888888631 223333333333322211 1234567888999986532221111111111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+ ..++.+||+++ .+++++++.|.+.+..
T Consensus 138 -------~~~-~~~~e~Sak~g-~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 138 -------DLG-MKYIETSARTG-DNVEEAFELLTQEIYE 167 (211)
T ss_pred -------HhC-CEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 001 25889999999 9999999999876543
No 446
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.20 E-value=4.9e-11 Score=113.58 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=96.0
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCcccccc-ceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP-NVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 253 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p-~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~ 253 (654)
..+|+++|.+|+|||||++.+.+....+..|..|+... ....+.+++. ..+.++|++|...... .....+.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~ 76 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------LNDAELA 76 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------cchhhhh
Confidence 34799999999999999999998654435565554322 2234555442 2567899998643211 1223356
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIH 332 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~ 332 (654)
.+|++++|+|.+.. ..+......+..+. .....|.++|+||+|+....... ....+....
T Consensus 77 ~~d~~llv~d~~~~------------~s~~~~~~~~~~~~-~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~------ 137 (169)
T cd01892 77 ACDVACLVYDSSDP------------KSFSYCAEVYKKYF-MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK------ 137 (169)
T ss_pred cCCEEEEEEeCCCH------------HHHHHHHHHHHHhc-cCCCCeEEEEEEcccccccccccccCHHHHHHH------
Confidence 78999999998631 22222222222221 12368999999999986432111 111111111
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+...++.+||.++ .+++++++.+.+.+
T Consensus 138 -----------~~~~~~~~~Sa~~~-~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 -----------LGLPPPLHFSSKLG-DSSNELFTKLATAA 165 (169)
T ss_pred -----------cCCCCCEEEEeccC-ccHHHHHHHHHHHh
Confidence 11124589999999 99999998887654
No 447
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.20 E-value=9.2e-11 Score=114.77 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=97.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+.+.... ..|+.|+.......+.+.+. ..+.++|+||...... + ....+..++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA----M---RKLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----H---HHHHhhcCC
Confidence 5899999999999999999875432 34555544444445555442 2578999999643221 1 122345678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHH--HHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYD--GIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~--~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|+... ..++.+..+..++..+.. ....|.++++||+|+........ ...+....
T Consensus 73 ~vilv~d~~~~---------~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~-------- 134 (198)
T cd04147 73 AFALVYAVDDP---------ESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEERQVPAKDALSTVEL-------- 134 (198)
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhcC-CCCCcEEEEEEccccccccccccHHHHHHHHHh--------
Confidence 88899988631 223333333333333222 14689999999999865311111 11111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
... ..++.+||+++ .|++++++.+.+.+.
T Consensus 135 --------~~~-~~~~~~Sa~~g-~gv~~l~~~l~~~~~ 163 (198)
T cd04147 135 --------DWN-CGFVETSAKDN-ENVLEVFKELLRQAN 163 (198)
T ss_pred --------hcC-CcEEEecCCCC-CCHHHHHHHHHHHhh
Confidence 000 25789999999 999999999987654
No 448
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.20 E-value=8.6e-11 Score=113.90 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=94.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+++........|..+.....-.+..++. ..+.++|+||..... ......+..++
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~-------~~~~~~~~~~d 74 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR-------SLNNSYYRGAH 74 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------hhHHHHccCCC
Confidence 6899999999999999999975432211221122222233444332 246799999953211 12334456678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++|+|.+. ...+..+..+..++..+.. ...|.+++.||.|+.............+..
T Consensus 75 ~iilv~d~~~---------~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~---------- 133 (188)
T cd04125 75 GYLLVYDVTD---------QESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCD---------- 133 (188)
T ss_pred EEEEEEECcC---------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHH----------
Confidence 8889988863 2233444443334433321 246888999999987432211111111111
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
..+ .+++.+||+++ .+++++++.+.+.+.
T Consensus 134 ------~~~-~~~~evSa~~~-~~i~~~f~~l~~~~~ 162 (188)
T cd04125 134 ------SLN-IPFFETSAKQS-INVEEAFILLVKLII 162 (188)
T ss_pred ------HcC-CeEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 001 15899999999 999999999877654
No 449
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.5e-10 Score=119.85 Aligned_cols=162 Identities=20% Similarity=0.276 Sum_probs=105.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-------------------------------cCCCcccccceeEEEEeCCCce
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-------------------------------ASYPFTTIKPNVGVITFDDFRK 473 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~v~~~~~~~ 473 (654)
.+++++|+..+|||||+-+|+.+--.+ .-+.+.|.+.....+..+- ..
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k-~~ 86 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK-YN 86 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC-ce
Confidence 578999999999999999987542211 0155777777777776664 37
Q ss_pred EEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcc--cCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEE
Q psy1086 474 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQ--LGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 551 (654)
Q Consensus 474 ~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~ii 551 (654)
+.|+|+||.. .|...+..-...||++++|+|++... .++. ...+..|.+.. .. ...-..+|+
T Consensus 87 ~tIiDaPGHr-------dFvknmItGasqAD~aVLVV~a~~~efE~g~~-~~gQtrEH~~L-----a~---tlGi~~lIV 150 (428)
T COG5256 87 FTIIDAPGHR-------DFVKNMITGASQADVAVLVVDARDGEFEAGFG-VGGQTREHAFL-----AR---TLGIKQLIV 150 (428)
T ss_pred EEEeeCCchH-------HHHHHhhcchhhccEEEEEEECCCCccccccc-cCCchhHHHHH-----HH---hcCCceEEE
Confidence 9999999943 35555556678999999999998542 2331 12222222211 11 112357899
Q ss_pred EEeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHH
Q psy1086 552 LVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 613 (654)
Q Consensus 552 v~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~ 613 (654)
+.||||+++- ++.++++...+..+.+.+. |+ ...++|+||||..|. |+.+--
T Consensus 151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G-----~~----~~~v~FIPiSg~~G~-Nl~~~s 203 (428)
T COG5256 151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVG-----YN----PKDVPFIPISGFKGD-NLTKKS 203 (428)
T ss_pred EEEcccccccCHHHHHHHHHHHHHHHHHcC-----CC----ccCCeEEecccccCC-cccccC
Confidence 9999999853 3455555554444443332 21 224679999999999 987654
No 450
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.19 E-value=1e-10 Score=111.00 Aligned_cols=155 Identities=21% Similarity=0.168 Sum_probs=91.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEe--C-CCccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF--D-DFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~--~-~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|+++|.+|||||||++.+..... ...+. .|.......+.+ + ....+.+||+||...... +.. .+...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~-~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~---~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF-EKKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG----LRD---GYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhcc----ccH---HHhcC
Confidence 689999999999999999975322 11222 122222222222 1 113578999999743221 111 22345
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++.+++|+|.+.. .....+.....++... ....|.++|.||+|+...... ....+....
T Consensus 73 ~d~~i~v~d~~~~---------~s~~~~~~~~~~i~~~---~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~-------- 131 (166)
T cd00877 73 GQCAIIMFDVTSR---------VTYKNVPNWHRDLVRV---CGNIPIVLCGNKVDIKDRKVK-AKQITFHRK-------- 131 (166)
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHHHHh---CCCCcEEEEEEchhcccccCC-HHHHHHHHH--------
Confidence 7888889888631 2223333333333322 237999999999998633211 111111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
....++.+||+++ .+++++++.+.+.+.
T Consensus 132 ----------~~~~~~e~Sa~~~-~~v~~~f~~l~~~~~ 159 (166)
T cd00877 132 ----------KNLQYYEISAKSN-YNFEKPFLWLARKLL 159 (166)
T ss_pred ----------cCCEEEEEeCCCC-CChHHHHHHHHHHHH
Confidence 0126899999999 999999999986653
No 451
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.18 E-value=1.2e-10 Score=110.63 Aligned_cols=157 Identities=20% Similarity=0.219 Sum_probs=94.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHHH
Q psy1086 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLI 258 (654)
Q Consensus 179 VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~i 258 (654)
|+++|++|||||||++.+++.. ...|. .|.......+.+.+ ..+.++|+||... +...+..++..++.+
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~--~~~~~-~t~g~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~~~a~~i 70 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEI--PKKVA-PTVGFTPTKLRLDK-YEVCIFDLGGGAN-------FRGIWVNYYAEAHGL 70 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--Ccccc-CcccceEEEEEECC-EEEEEEECCCcHH-------HHHHHHHHHcCCCEE
Confidence 7899999999999999999862 22222 23334444555554 4789999999532 222345667788899
Q ss_pred HHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 259 AMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 259 l~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
++|+|.+.. . .+......+..+.. .+...|.++|+||.|+...... ..+.+.+. +.... .
T Consensus 71 i~V~D~s~~---------~---s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~-~~i~~~~~-l~~~~----~ 132 (167)
T cd04161 71 VFVVDSSDD---------D---RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG-ADVIEYLS-LEKLV----N 132 (167)
T ss_pred EEEEECCch---------h---HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH-HHHHHhcC-ccccc----C
Confidence 999998731 1 22222222222221 2357899999999998765422 22222221 11100 0
Q ss_pred ccchhhhcccceEEEeecccC-----ccchHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTN-----STDVNDAKLKIR 369 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~-----~~~i~~L~~~i~ 369 (654)
+ ......++++||+++ .+|+.+.+++|.
T Consensus 133 ~-----~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 133 E-----NKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred C-----CCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 0 000125778999984 267888888875
No 452
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.18 E-value=1.5e-10 Score=112.25 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=95.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCcc-ccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFT-TIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~t-Tl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
-+|+++|.+|+|||||++.+..... ...|+.+ +.....-.+.+++. ..+.+||++|..... ..+......
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~~~~ 78 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSYSRG 78 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhcC
Confidence 4799999999999999999987422 2223211 11112223444432 257889999964221 122234456
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
++.+++|+|++. ...++.+..+..++..+ ....|.+||.||.|+...... .++..++...
T Consensus 79 ad~illVfD~t~---------~~Sf~~~~~w~~~i~~~---~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~------- 139 (189)
T cd04121 79 AQGIILVYDITN---------RWSFDGIDRWIKEIDEH---APGVPKILVGNRLHLAFKRQVATEQAQAYAER------- 139 (189)
T ss_pred CCEEEEEEECcC---------HHHHHHHHHHHHHHHHh---CCCCCEEEEEECccchhccCCCHHHHHHHHHH-------
Confidence 788889999874 23444444444444333 246788999999998643221 2222222211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ ...+.+||+++ .+++++++.+.+.+
T Consensus 140 ----------~~-~~~~e~SAk~g-~~V~~~F~~l~~~i 166 (189)
T cd04121 140 ----------NG-MTFFEVSPLCN-FNITESFTELARIV 166 (189)
T ss_pred ----------cC-CEEEEecCCCC-CCHHHHHHHHHHHH
Confidence 01 25899999999 99999999987654
No 453
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.17 E-value=1.6e-10 Score=114.98 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=93.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCcccc-ccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHH-H
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTI-KPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVE-R 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl-~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~-~ 254 (654)
+|+++|.+|+|||||++.+.+.......|+.+.- ....-.+.++. ...+.++|+||... .+... ... .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~~~---~~~~~ 72 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------WTEDS---CMQYQ 72 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch------HHHhH---HhhcC
Confidence 6899999999999999999654333233332221 22222344432 23588999999641 01111 122 5
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++.+++|+|+++. ..+.....+..++..+. .....|.++|.||+|+.............+...
T Consensus 73 ad~iilV~d~td~---------~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~------- 135 (221)
T cd04148 73 GDAFVVVYSVTDR---------SSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARSREVSVQEGRACAVV------- 135 (221)
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccccceecHHHHHHHHHH-------
Confidence 7888888888641 22232332333332221 124689999999999865432211111111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+ ..++++||+++ .|++++++.+.+.+.
T Consensus 136 ---------~~-~~~~e~SA~~~-~gv~~l~~~l~~~~~ 163 (221)
T cd04148 136 ---------FD-CKFIETSAGLQ-HNVDELLEGIVRQIR 163 (221)
T ss_pred ---------cC-CeEEEecCCCC-CCHHHHHHHHHHHHH
Confidence 01 25789999999 999999999887664
No 454
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.17 E-value=4.3e-11 Score=116.09 Aligned_cols=165 Identities=24% Similarity=0.336 Sum_probs=96.9
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCC------------------CCccccccceEEEE--eCCCccEEEEecCccc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIAS------------------YPFTTIKPNVGVIT--FDDFRKMSVADLPGLI 235 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~------------------~~~tTl~p~~G~v~--~~~~~~~~i~D~PGl~ 235 (654)
...|+++|..++|||||+.+|++..-.+.. ....|.......+. ... ..++++|+||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~-~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN-RKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS-EEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc-cceeeccccccc
Confidence 346899999999999999999865322211 11223333334444 333 589999999964
Q ss_pred ccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh
Q psy1086 236 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE 315 (654)
Q Consensus 236 ~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~ 315 (654)
+ +.....+.+..+|.+++|+|+... ......+...+.. ....|.++++||+|+... +
T Consensus 82 ~-------f~~~~~~~~~~~D~ailvVda~~g--------------~~~~~~~~l~~~~-~~~~p~ivvlNK~D~~~~-~ 138 (188)
T PF00009_consen 82 D-------FIKEMIRGLRQADIAILVVDANDG--------------IQPQTEEHLKILR-ELGIPIIVVLNKMDLIEK-E 138 (188)
T ss_dssp H-------HHHHHHHHHTTSSEEEEEEETTTB--------------STHHHHHHHHHHH-HTT-SEEEEEETCTSSHH-H
T ss_pred c-------eeecccceecccccceeeeecccc--------------ccccccccccccc-ccccceEEeeeeccchhh-h
Confidence 2 333455556667888888888631 0111122222222 267889999999999832 2
Q ss_pred HHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 316 IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 316 ~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
..+...+....+. ..+... .....+++++||.++ .|+++|++.+.+.++
T Consensus 139 ~~~~~~~~~~~l~---~~~~~~-----~~~~~~vi~~Sa~~g-~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 139 LEEIIEEIKEKLL---KEYGEN-----GEEIVPVIPISALTG-DGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHHHH---HHTTST-----TTSTEEEEEEBTTTT-BTHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhc---cccccC-----ccccceEEEEecCCC-CCHHHHHHHHHHhCc
Confidence 2222222111110 000000 001247999999999 999999999987764
No 455
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.17 E-value=1.2e-10 Score=110.68 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=90.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|.++|.+|||||||++.|++.... ..+..+...-....+..++ ...+.++|+||..+.... .. .....++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~----~~---~~~~~~~ 73 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL----RP---LSYPNTD 73 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc----ch---hhcCCCC
Confidence 5899999999999999999986542 2222222211122222222 125889999997643211 11 1124577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHH-HHHHHhHhhcCcceeEeecccCccchHhHHHH------------HHHH
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNK-ELELYKMNLLEKPIILLVNKMDVEGAQEIYDG------------IRDT 323 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~-el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~------------l~~~ 323 (654)
.+++++|.... .++..... .+..+.......|.++|.||+|+......... ..+.
T Consensus 74 ~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 74 VFLICFSVDSP------------SSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred EEEEEEECCCH------------HHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHH
Confidence 88888888631 12222211 12222222347999999999998765432211 1111
Q ss_pred HhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 324 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 324 ~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
.. ..+...++.+||+++ .+++++++.+.+
T Consensus 142 ~~-----------------~~~~~~~~~~Sa~~~-~gi~~l~~~i~~ 170 (171)
T cd00157 142 AK-----------------EIGAIGYMECSALTQ-EGVKEVFEEAIR 170 (171)
T ss_pred HH-----------------HhCCeEEEEeecCCC-CCHHHHHHHHhh
Confidence 11 112236899999999 999999988753
No 456
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.17 E-value=9.6e-11 Score=111.61 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=91.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|++|+|||||++.+++........+..........+.+++. ..+.+||+||..+... .+ .......+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~---~~~~~~~~ 76 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK---SM---VQHYYRNV 76 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH---hh---HHHhhcCC
Confidence 37899999999999999999874322111121111222233444432 3578999999542210 01 11223456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++|+|... ...+..+..+..++..+.. ....|.+++.||+|+...........+.+...
T Consensus 77 d~~i~v~d~~~---------~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------- 138 (170)
T cd04115 77 HAVVFVYDVTN---------MASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQVPTDLAQRFADA-------- 138 (170)
T ss_pred CEEEEEEECCC---------HHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcCCCHHHHHHHHHH--------
Confidence 77888888863 1223333333333332221 24689999999999865443222222222110
Q ss_pred CccchhhhcccceEEEeeccc---CccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKT---NSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~---~~~~i~~L~~~i~~~l 372 (654)
.. ..++.+||++ + .++++++..+.+.+
T Consensus 139 --------~~-~~~~e~Sa~~~~~~-~~i~~~f~~l~~~~ 168 (170)
T cd04115 139 --------HS-MPLFETSAKDPSEN-DHVEAIFMTLAHKL 168 (170)
T ss_pred --------cC-CcEEEEeccCCcCC-CCHHHHHHHHHHHh
Confidence 00 2578999998 7 88888887776543
No 457
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.17 E-value=1.8e-11 Score=112.83 Aligned_cols=139 Identities=19% Similarity=0.278 Sum_probs=83.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|++||.+|+|||||++++++... .++ +.. .+.+.. .++||||.... ...+.......+..+|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---~~~-----~t~-~~~~~~----~~iDt~G~~~~---~~~~~~~~~~~~~~ad~ 65 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---LYK-----KTQ-AVEYND----GAIDTPGEYVE---NRRLYSALIVTAADADV 65 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---ccc-----cce-eEEEcC----eeecCchhhhh---hHHHHHHHHHHhhcCCE
Confidence 689999999999999999998643 121 111 233322 68999996311 11112222334667888
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCc
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 337 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~ 337 (654)
+++|+|+.... .... ..+ .. ...+|.++++||+|+.......+...+..+..
T Consensus 66 vilv~d~~~~~-----s~~~--~~~-------~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~---------- 117 (142)
T TIGR02528 66 IALVQSATDPE-----SRFP--PGF-------AS----IFVKPVIGLVTKIDLAEADVDIERAKELLETA---------- 117 (142)
T ss_pred EEEEecCCCCC-----cCCC--hhH-------HH----hccCCeEEEEEeeccCCcccCHHHHHHHHHHc----------
Confidence 89999986421 0000 011 11 12359999999999865322222222322211
Q ss_pred cchhhhcccceEEEeecccCccchHHHHHHH
Q psy1086 338 FQPEKVIKFQSILPISAKTNSTDVNDAKLKI 368 (654)
Q Consensus 338 ~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i 368 (654)
+..+++++||+++ .+++++++.+
T Consensus 118 -------~~~~~~~~Sa~~~-~gi~~l~~~l 140 (142)
T TIGR02528 118 -------GAEPIFEISSVDE-QGLEALVDYL 140 (142)
T ss_pred -------CCCcEEEEecCCC-CCHHHHHHHH
Confidence 1125789999999 9999998776
No 458
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.6e-10 Score=112.05 Aligned_cols=169 Identities=17% Similarity=0.297 Sum_probs=105.1
Q ss_pred ceeccccccCcEEEEeccCcCCCCCCCCcccccceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCC-----
Q psy1086 132 TKLGELNTEEDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASY----- 206 (654)
Q Consensus 132 ~~~~~l~~~~~~~~~a~Gg~gg~gn~~f~g~~Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~----- 206 (654)
..+.+|. .+.+.|+|+-.+++.++..+||| +++|+|+|||||||||+.+++..|+-+..
T Consensus 29 ~~li~l~----~v~v~r~gk~iL~~isW~V~~ge------------~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G 92 (257)
T COG1119 29 EPLIELK----NVSVRRNGKKILGDLSWQVNPGE------------HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLG 92 (257)
T ss_pred cceEEec----ceEEEECCEeeccccceeecCCC------------cEEEECCCCCCHHHHHHHHhcccCCCCCceeeee
Confidence 3445554 47889999999999999999998 69999999999999999999976652210
Q ss_pred -Cc------cccccceEEEEeC----CCccEEEEecCcccccccccccchHH--HHHHHHHHHHHHHhhcccCcccCCCC
Q psy1086 207 -PF------TTIKPNVGVITFD----DFRKMSVADLPGLIEGAHRNLGMGHQ--FLRHVERTKLIAMIVDVNGFQLGLKH 273 (654)
Q Consensus 207 -~~------tTl~p~~G~v~~~----~~~~~~i~D~PGl~~~~~~~~~l~~~--~l~~i~~~~~il~vvd~~~~~l~~~~ 273 (654)
+| ..+....|.+.-. -..+..+.|+- ..+.....++..+ .....+++..++..+.+ .+
T Consensus 93 ~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvV--lSg~~~siG~y~~~~~~~~~~~a~~lle~~g~-------~~ 163 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVV--LSGFFASIGIYQEDLTAEDLAAAQWLLELLGA-------KH 163 (257)
T ss_pred eeccCCcchHHHHHHhCccCHHHHhhcccccccceee--eecccccccccccCCCHHHHHHHHHHHHHcch-------hh
Confidence 00 1122233333210 00011222220 1111111122110 01112223333333333 23
Q ss_pred CccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHHHh
Q psy1086 274 PKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 274 ~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~~ 325 (654)
..+.++.++|.+++++..+++++..+|.++++ +-+|+...+...+.+.+...
T Consensus 164 la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~ 219 (257)
T COG1119 164 LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219 (257)
T ss_pred hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999 88999877777766666544
No 459
>PRK13796 GTPase YqeH; Provisional
Probab=99.17 E-value=3.7e-11 Score=128.13 Aligned_cols=155 Identities=23% Similarity=0.328 Sum_probs=97.3
Q ss_pred HHHHHHHHH-HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhc
Q psy1086 248 FLRHVERTK-LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHN 326 (654)
Q Consensus 248 ~l~~i~~~~-~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~ 326 (654)
.++.+...+ ++++|+|+.++. .. ...++..+. ..+|.++|+||+|+.......+.+.+++..
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~-----------~s---~~~~L~~~~---~~kpviLViNK~DLl~~~~~~~~i~~~l~~ 124 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN-----------GS---WIPGLHRFV---GNNPVLLVGNKADLLPKSVKKNKVKNWLRQ 124 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC-----------Cc---hhHHHHHHh---CCCCEEEEEEchhhCCCccCHHHHHHHHHH
Confidence 444554444 788999987531 11 122233322 368999999999997532222222222221
Q ss_pred cccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCC
Q psy1086 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNG 406 (654)
Q Consensus 327 l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 406 (654)
..... ...+..++.+||+++ .+++++++.+.+...
T Consensus 125 ~~k~~-----------g~~~~~v~~vSAk~g-~gI~eL~~~I~~~~~--------------------------------- 159 (365)
T PRK13796 125 EAKEL-----------GLRPVDVVLISAQKG-HGIDELLEAIEKYRE--------------------------------- 159 (365)
T ss_pred HHHhc-----------CCCcCcEEEEECCCC-CCHHHHHHHHHHhcC---------------------------------
Confidence 10000 001125889999999 999999888754310
Q ss_pred cccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcC------CCccCCCcccccceeEEEEeCCCceEEEEecC
Q psy1086 407 WLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRAR------PKIASYPFTTIKPNVGVITFDDFRKMSVADLP 480 (654)
Q Consensus 407 ~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~------~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTp 480 (654)
+.+++++|.+|||||||+|+|++.. ...+..|+||++... +.++++ ..++|||
T Consensus 160 -----------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l~~~--~~l~DTP 218 (365)
T PRK13796 160 -----------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPLDDG--SFLYDTP 218 (365)
T ss_pred -----------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEcCCC--cEEEECC
Confidence 1268999999999999999998642 124678999987654 444443 5899999
Q ss_pred CCCCC
Q psy1086 481 GLIEG 485 (654)
Q Consensus 481 G~~~~ 485 (654)
|+...
T Consensus 219 Gi~~~ 223 (365)
T PRK13796 219 GIIHR 223 (365)
T ss_pred Ccccc
Confidence 98654
No 460
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.16 E-value=1.1e-10 Score=113.99 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=88.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCC-----ccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHH-
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYP-----FTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRH- 251 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~-----~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~- 251 (654)
+|+++|.+|||||||+|+|+|........+ -+|.. ...+.......+.++|+||+.+.... ...+++.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~l~l~DtpG~~~~~~~----~~~~l~~~ 76 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMK--RTPYPHPKFPNVTLWDLPGIGSTAFP----PDDYLEEM 76 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccC--ceeeecCCCCCceEEeCCCCCcccCC----HHHHHHHh
Confidence 589999999999999999998543221111 11211 12222222346899999998643221 1222222
Q ss_pred -HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH------------hHHH
Q psy1086 252 -VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ------------EIYD 318 (654)
Q Consensus 252 -i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~------------~~~~ 318 (654)
+..+|+++++.+.. ... .+..+...... ..+|.++|+||+|+.... +.++
T Consensus 77 ~~~~~d~~l~v~~~~---------~~~-------~d~~~~~~l~~-~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~ 139 (197)
T cd04104 77 KFSEYDFFIIISSTR---------FSS-------NDVKLAKAIQC-MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQ 139 (197)
T ss_pred CccCcCEEEEEeCCC---------CCH-------HHHHHHHHHHH-hCCCEEEEEecccchhhhhhccccccccHHHHHH
Confidence 12334444432211 011 11111111111 268999999999985321 2222
Q ss_pred HHHHHHhccccccccCCCccchhhhcccceEEEeecc--cCccchHHHHHHHHHHHHHhHh
Q psy1086 319 GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK--TNSTDVNDAKLKIRSILDLLAE 377 (654)
Q Consensus 319 ~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~--~~~~~i~~L~~~i~~~l~~~~~ 377 (654)
.+++.+..... ........++.+|+. .+ .++..|.+.|...++..++
T Consensus 140 ~i~~~~~~~~~-----------~~~~~~p~v~~vS~~~~~~-~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 140 EIRDNCLENLQ-----------EAGVSEPPVFLVSNFDPSD-YDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HHHHHHHHHHH-----------HcCCCCCCEEEEeCCChhh-cChHHHHHHHHHHhhHHHH
Confidence 33332221110 001122378999998 57 8999999999888876544
No 461
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.16 E-value=1.6e-10 Score=110.46 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=93.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+.+.... ..|..|.-.-..-.+.+++. ..+.++|+||...... + ....+..++
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----l---~~~~~~~~d 75 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA----M---RDQYMRCGE 75 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH----H---hHHHhhcCC
Confidence 6899999999999999998764322 22322222111223444431 2578999999653221 1 223344577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHH-HHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYD-GIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~-~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|.++ ...+..+..+...+.... .....|.++|.||+|+........ +..+....
T Consensus 76 ~~ilv~d~~~---------~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~--------- 136 (172)
T cd04141 76 GFIICYSVTD---------RHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE--------- 136 (172)
T ss_pred EEEEEEECCc---------hhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH---------
Confidence 8888888764 233344433333333221 114679999999999864322111 11111111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+ .+++.+||+++ .+++++++++.+.+.
T Consensus 137 --------~~-~~~~e~Sa~~~-~~v~~~f~~l~~~~~ 164 (172)
T cd04141 137 --------FN-CPFFETSAALR-HYIDDAFHGLVREIR 164 (172)
T ss_pred --------hC-CEEEEEecCCC-CCHHHHHHHHHHHHH
Confidence 01 26889999999 999999998875543
No 462
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.16 E-value=5.9e-11 Score=126.45 Aligned_cols=178 Identities=24% Similarity=0.356 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccc
Q psy1086 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 253 ~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~ 332 (654)
..++++++|+|+.++. .. +..++..+ +..+|.++|+||+|+.......+.+.+++.+....
T Consensus 62 ~~~~~Il~VvD~~d~~-----------~s---~~~~l~~~---~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~-- 122 (360)
T TIGR03597 62 DSNALIVYVVDIFDFE-----------GS---LIPELKRF---VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE-- 122 (360)
T ss_pred cCCcEEEEEEECcCCC-----------CC---ccHHHHHH---hCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH--
Confidence 4556889999986431 00 11222222 23689999999999865432222333322210000
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCC
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKG 412 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 412 (654)
. ......++.+||+++ .+++++++.+.++..
T Consensus 123 -~--------g~~~~~i~~vSAk~g-~gv~eL~~~l~~~~~--------------------------------------- 153 (360)
T TIGR03597 123 -L--------GLKPVDIILVSAKKG-NGIDELLDKIKKARN--------------------------------------- 153 (360)
T ss_pred -c--------CCCcCcEEEecCCCC-CCHHHHHHHHHHHhC---------------------------------------
Confidence 0 000125889999999 999999988754310
Q ss_pred cceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC------CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCC
Q psy1086 413 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP------KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486 (654)
Q Consensus 413 ~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~------~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~ 486 (654)
+.+++++|.+|+|||||+|.+++... ..+..|++|++... +.+++ .+.++||||+....
T Consensus 154 -----------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~~~--~~~l~DtPG~~~~~ 218 (360)
T TIGR03597 154 -----------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPLDD--GHSLYDTPGIINSH 218 (360)
T ss_pred -----------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEeCC--CCEEEECCCCCChh
Confidence 13689999999999999999998532 45678999987654 44443 46899999997643
Q ss_pred ccccchhHHHHHHh---hcccEEEEEEeCC
Q psy1086 487 HRNLGMGHQFLRHV---ERTKLIAMIVDVN 513 (654)
Q Consensus 487 ~~~~~~~~~~~~~~---~~a~~~ilV~D~~ 513 (654)
....-+....+.++ .......+.+|..
T Consensus 219 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 248 (360)
T TIGR03597 219 QMAHYLDKKDLKYITPKKEIKPKTYQLNPN 248 (360)
T ss_pred HhhhhcCHHHHhhcCCCCccCceEEEeCCC
Confidence 22221222222232 2445666666654
No 463
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.16 E-value=1.7e-10 Score=119.33 Aligned_cols=142 Identities=24% Similarity=0.285 Sum_probs=92.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCcc-----------EEEEecCcc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRK-----------MSVADLPGL 234 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~-----------~~i~D~PGl 234 (654)
..+|+|+++.|+-+||+|+||||||||+++|+|. +.|..|.+.+.+... -.+.+.|.+
T Consensus 21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~ 89 (293)
T COG1131 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89 (293)
T ss_pred EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcCEeCccCHHHHHhheEEEccCCCC
Confidence 3567777777778999999999999999999994 677888888765210 123333333
Q ss_pred ccccc--ccccchHHHHH-----HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee--
Q psy1086 235 IEGAH--RNLGMGHQFLR-----HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV-- 305 (654)
Q Consensus 235 ~~~~~--~~~~l~~~~l~-----~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl-- 305 (654)
.+... ++..+...+.. ..++.+-++..+.+. +.....+..+|.+++++..++.+|..+|.++++
T Consensus 90 ~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-------~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 90 YPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLE-------DKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred CccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCc-------hhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 22111 11111111110 011222333333332 223677899999999999999999999999999
Q ss_pred --cccCccchHhHHHHHHHHHh
Q psy1086 306 --NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 306 --NK~D~~~~~~~~~~l~~~~~ 325 (654)
|-+|.....+..+.+++...
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAK 184 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHh
Confidence 88998877777666666554
No 464
>PRK12740 elongation factor G; Reviewed
Probab=99.16 E-value=6.4e-10 Score=128.72 Aligned_cols=109 Identities=26% Similarity=0.288 Sum_probs=76.7
Q ss_pred EcCCCCChhhHHHHHHhcCCCcc------------------CCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccc
Q psy1086 430 VGFPNAGKSTFLKAISRARPKIA------------------SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLG 491 (654)
Q Consensus 430 ~G~~~~GKstl~~~l~~~~~~~~------------------~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~ 491 (654)
+|+.++|||||+++|+.....+. ...++|.......+.+++ ..+.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~i~liDtPG~~~------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG-HKINLIDTPGHVD------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC-EEEEEEECCCcHH-------
Confidence 58999999999999965432210 135666777777788877 4899999999643
Q ss_pred hhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh
Q psy1086 492 MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 561 (654)
Q Consensus 492 ~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~ 561 (654)
+...+..+++.+|++++|+|++.. ........|. .+. ..++|+++|+||+|+...
T Consensus 73 ~~~~~~~~l~~aD~vllvvd~~~~---------~~~~~~~~~~-~~~-----~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 FTGEVERALRVLDGAVVVVCAVGG---------VEPQTETVWR-QAE-----KYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCC---------cCHHHHHHHH-HHH-----HcCCCEEEEEECCCCCCC
Confidence 455667889999999999999832 2222222222 221 246899999999998743
No 465
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.15 E-value=8.1e-10 Score=109.38 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=99.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|..++||||+.+.+..+-.. ....-+.|.+.....+...+...+.+||.||+....... +..+....++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~--~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY--FNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT--HTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc--ccccHHHHHhccC
Confidence 6899999999999999999876332 233445666676666765665689999999987654321 1112234578999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++|+|+|+. +.+-.+.+.....-+........+..+-++..|+|+..+....+-..+....+.+.+....
T Consensus 79 ~LIyV~D~q---------s~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~- 148 (232)
T PF04670_consen 79 VLIYVFDAQ---------SDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG- 148 (232)
T ss_dssp EEEEEEETT----------STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred EEEEEEEcc---------cccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc-
Confidence 999999997 2223344444333333322233578899999999998654333222222222333322111
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.+...++.||..... +-++|..|...
T Consensus 149 -------~~~~~~~~TSI~D~S--ly~A~S~Ivq~ 174 (232)
T PF04670_consen 149 -------IEDITFFLTSIWDES--LYEAWSKIVQK 174 (232)
T ss_dssp --------TSEEEEEE-TTSTH--HHHHHHHHHHT
T ss_pred -------ccceEEEeccCcCcH--HHHHHHHHHHH
Confidence 112468999998855 77777766653
No 466
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.15 E-value=2.4e-10 Score=110.56 Aligned_cols=160 Identities=18% Similarity=0.085 Sum_probs=94.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC--ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~--~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|+|||||++.+.+... ...|..|+.......+...+. ..+.+|||||...... ........+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~a 73 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR-------LRPLSYPDV 73 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH-------HHHHhCCCC
Confidence 689999999999999999987543 234444433333334444322 2578999999532211 111123457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHH-HHHHHHHHhHhhcCcceeEeecccCccchHh-----HHHHHHHHHhcccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLL-LNKELELYKMNLLEKPIILLVNKMDVEGAQE-----IYDGIRDTLHNLKD 329 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~-~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~-----~~~~l~~~~~~l~~ 329 (654)
+.+++|+|.+. ...++.+.. +..++..+ ....|.+++.||.|+..... ..++..+....
T Consensus 74 d~ii~v~d~~~---------~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~--- 138 (187)
T cd04132 74 DVLLICYAVDN---------PTSLDNVEDKWFPEVNHF---CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK--- 138 (187)
T ss_pred CEEEEEEECCC---------HHHHHHHHHHHHHHHHHh---CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH---
Confidence 88888888863 122333321 11222221 24679999999999864321 01111111111
Q ss_pred ccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 330 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 330 ~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
.+...++.+||+++ .++++++..+.+.+...
T Consensus 139 --------------~~~~~~~e~Sa~~~-~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 139 --------------QGAFAYLECSAKTM-ENVEEVFDTAIEEALKK 169 (187)
T ss_pred --------------cCCcEEEEccCCCC-CCHHHHHHHHHHHHHhh
Confidence 11125799999999 99999999988765443
No 467
>KOG0073|consensus
Probab=99.15 E-value=4.4e-10 Score=101.38 Aligned_cols=161 Identities=21% Similarity=0.245 Sum_probs=104.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|.++|++||||||+++.+.+..+. ....|+-.+.-.+.+.+ .++.+||+.|.. .+...+....+.++.
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~~---~i~pt~gf~Iktl~~~~-~~L~iwDvGGq~-------~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 18 RILILGLDNSGKTTIVKKLLGEDTD---TISPTLGFQIKTLEYKG-YTLNIWDVGGQK-------TLRSYWKNYFESTDG 86 (185)
T ss_pred EEEEEecCCCCchhHHHHhcCCCcc---ccCCccceeeEEEEecc-eEEEEEEcCCcc-------hhHHHHHHhhhccCe
Confidence 7899999999999999999996432 11113333444566666 489999999853 344555667788999
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCc
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 337 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~ 337 (654)
+++|+|.++. +...+....+. ++.. ...++..|.++++||.|+++.-. .+.+...+. +....
T Consensus 87 lIwvvDssD~--------~r~~e~~~~L~-~lL~-eerlaG~~~Lvlank~dl~~~l~-~~~i~~~~~-L~~l~------ 148 (185)
T KOG0073|consen 87 LIWVVDSSDR--------MRMQECKQELT-ELLV-EERLAGAPLLVLANKQDLPGALS-LEEISKALD-LEELA------ 148 (185)
T ss_pred EEEEEECchH--------HHHHHHHHHHH-HHHh-hhhhcCCceEEEEecCcCccccC-HHHHHHhhC-HHHhc------
Confidence 9999999742 22223333333 3322 56778899999999999985422 122221111 11100
Q ss_pred cchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 338 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 338 ~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.....+++.+||.++ +++.+-++++...+.
T Consensus 149 -----ks~~~~l~~cs~~tg-e~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 149 -----KSHHWRLVKCSAVTG-EDLLEGIDWLCDDLM 178 (185)
T ss_pred -----cccCceEEEEecccc-ccHHHHHHHHHHHHH
Confidence 001147899999999 999998888876543
No 468
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.15 E-value=3.8e-10 Score=110.06 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=90.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCC-CC---------------CCccccccceEEEEeCCCccEEEEecCcccccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKI-AS---------------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 240 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~---------------~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~ 240 (654)
..|+++|.+|+|||||+++|.+....+ .. ...+|.......+.+.. ..+.++||||...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~~~l~DtpG~~~~--- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKD-TKINIVDTPGHADF--- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECC-EEEEEEECCCcHHH---
Confidence 479999999999999999998632111 11 12334444545555554 47899999997532
Q ss_pred cccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH--hHHH
Q psy1086 241 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EIYD 318 (654)
Q Consensus 241 ~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~--~~~~ 318 (654)
.......+..++.+++|+|+... +.........+ .. ....|.++++||+|+.... ...+
T Consensus 79 ----~~~~~~~~~~~d~~ilV~d~~~~----------~~~~~~~~~~~---~~--~~~~p~iiv~NK~Dl~~~~~~~~~~ 139 (194)
T cd01891 79 ----GGEVERVLSMVDGVLLLVDASEG----------PMPQTRFVLKK---AL--ELGLKPIVVINKIDRPDARPEEVVD 139 (194)
T ss_pred ----HHHHHHHHHhcCEEEEEEECCCC----------ccHHHHHHHHH---HH--HcCCCEEEEEECCCCCCCCHHHHHH
Confidence 22345566778888999998631 11111111111 11 1467999999999986432 2233
Q ss_pred HHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHH
Q psy1086 319 GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 365 (654)
Q Consensus 319 ~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~ 365 (654)
++.+.+..+..... ..+ .+++++||+++ .++.++.
T Consensus 140 ~~~~~~~~~~~~~~----------~~~-~~iv~~Sa~~g-~~~~~~~ 174 (194)
T cd01891 140 EVFDLFIELGATEE----------QLD-FPVLYASAKNG-WASLNLE 174 (194)
T ss_pred HHHHHHHHhCCccc----------cCc-cCEEEeehhcc-ccccccc
Confidence 33333322110000 011 26899999998 8875553
No 469
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.14 E-value=1.9e-10 Score=109.84 Aligned_cols=168 Identities=18% Similarity=0.118 Sum_probs=92.4
Q ss_pred EEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 179 VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
|+++|.+|+|||||++.+.+... ...|..+........+..++. ..+.+||+||....... . ......+++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~---~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRL----R---PLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchh----c---hhhcCCCCE
Confidence 57999999999999999987543 233333333323333444432 24789999996433221 1 112345678
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCc
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 337 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~ 337 (654)
+++++|++. ...++.+.. ..+..+.......|.+++.||+|+.......+.+.+.-.. .+. ...
T Consensus 73 ~ilv~d~~~---------~~s~~~~~~--~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~v~--~~~ 136 (174)
T smart00174 73 FLICFSVDS---------PASFENVKE--KWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQE---PVT--YEQ 136 (174)
T ss_pred EEEEEECCC---------HHHHHHHHH--HHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCC---Ccc--HHH
Confidence 888888863 122333221 1122222223578999999999986533222221110000 000 000
Q ss_pred -cchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 338 -FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 338 -~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
..-....+...++++||+++ .+++++++.+.+.
T Consensus 137 ~~~~~~~~~~~~~~e~Sa~~~-~~v~~lf~~l~~~ 170 (174)
T smart00174 137 GEALAKRIGAVKYLECSALTQ-EGVREVFEEAIRA 170 (174)
T ss_pred HHHHHHHcCCcEEEEecCCCC-CCHHHHHHHHHHH
Confidence 00000112236789999999 9999999988754
No 470
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.14 E-value=1.1e-10 Score=111.53 Aligned_cols=169 Identities=20% Similarity=0.155 Sum_probs=93.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|++|||||||++.+.+... ...|..|........+.+++. ..+.++||||....... . ...+..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL----R---PLSYPDT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhc----c---ccccCCC
Confidence 3689999999999999999997432 233444444333455655542 25789999996432111 0 0123445
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHH-HHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLL-LNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~-~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
+.++++.|+.+ ...++.+.. +..++. ......|.+++.||+|+.......+.+...... ....
T Consensus 74 d~~i~v~~~~~---------~~s~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~----~v~~ 137 (175)
T cd01870 74 DVILMCFSIDS---------PDSLENIPEKWTPEVK---HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE----PVKP 137 (175)
T ss_pred CEEEEEEECCC---------HHHHHHHHHHHHHHHH---hhCCCCCEEEEeeChhcccChhhhhhhhhccCC----CccH
Confidence 66666666653 122233321 122222 223478999999999986543322222110000 0000
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
..........+...++.+||+++ .|++++++.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~lf~~l~~ 172 (175)
T cd01870 138 EEGRDMANKIGAFGYMECSAKTK-EGVREVFEMATR 172 (175)
T ss_pred HHHHHHHHHcCCcEEEEeccccC-cCHHHHHHHHHH
Confidence 00000000112236899999999 999999988764
No 471
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.14 E-value=7.6e-11 Score=112.96 Aligned_cols=157 Identities=22% Similarity=0.264 Sum_probs=101.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|.++|++|||||||++.|.... +.. +..|.......+.+.+ ..+.++|++|..... ..+..+...++.
T Consensus 16 ~ililGl~~sGKTtll~~l~~~~--~~~-~~pT~g~~~~~i~~~~-~~~~~~d~gG~~~~~-------~~w~~y~~~~~~ 84 (175)
T PF00025_consen 16 KILILGLDGSGKTTLLNRLKNGE--ISE-TIPTIGFNIEEIKYKG-YSLTIWDLGGQESFR-------PLWKSYFQNADG 84 (175)
T ss_dssp EEEEEESTTSSHHHHHHHHHSSS--EEE-EEEESSEEEEEEEETT-EEEEEEEESSSGGGG-------GGGGGGHTTESE
T ss_pred EEEEECCCccchHHHHHHhhhcc--ccc-cCcccccccceeeeCc-EEEEEEecccccccc-------ccceeeccccce
Confidence 79999999999999999998632 111 2235555666777766 579999999853221 112233456789
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHh--HhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~--~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
++||+|.++. + .+.....++..+. ..+...|.++++||.|.+.... .+++...+... . +.
T Consensus 85 iIfVvDssd~--------~----~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~-~----l~ 146 (175)
T PF00025_consen 85 IIFVVDSSDP--------E----RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS-EEEIKEYLGLE-K----LK 146 (175)
T ss_dssp EEEEEETTGG--------G----GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGG-G----TT
T ss_pred eEEEEecccc--------e----eecccccchhhhcchhhcccceEEEEeccccccCcch-hhHHHhhhhhh-h----cc
Confidence 9999999742 1 1222222332222 2456789999999999876533 23444443321 1 11
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
......++.+||.++ +|+.+.+++|.+.
T Consensus 147 -------~~~~~~v~~~sa~~g-~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 -------NKRPWSVFSCSAKTG-EGVDEGLEWLIEQ 174 (175)
T ss_dssp -------SSSCEEEEEEBTTTT-BTHHHHHHHHHHH
T ss_pred -------cCCceEEEeeeccCC-cCHHHHHHHHHhc
Confidence 001136889999999 9999999998764
No 472
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.13 E-value=4.5e-11 Score=113.66 Aligned_cols=54 Identities=33% Similarity=0.636 Sum_probs=44.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~ 482 (654)
.+++++|.+|+|||||+|++.+... ..+..|++|...+... ++. .+.++||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~~~--~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--LDK--KVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--eCC--CEEEEECcCC
Confidence 5899999999999999999999765 4567899998766543 333 6899999995
No 473
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.13 E-value=3.8e-10 Score=111.80 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=94.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|++||.+|+|||||++.+...... .+ .+|.........+.. ..+.+||+||...... +. ......+++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~--~~-~~Tig~~~~~~~~~~-~~l~iwDt~G~e~~~~----l~---~~~~~~ad~ 70 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--DT-VSTVGGAFYLKQWGP-YNISIWDTAGREQFHG----LG---SMYCRGAAA 70 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CC-CCccceEEEEEEeeE-EEEEEEeCCCcccchh----hH---HHHhccCCE
Confidence 5899999999999999999875432 12 123333332223322 3589999999643211 11 223456788
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch-------------------Hh-HH
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA-------------------QE-IY 317 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~-------------------~~-~~ 317 (654)
+++|+|++. +..+..+......+... .....|.++|.||.|+... .. ..
T Consensus 71 ~IlV~Dvt~---------~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~ 139 (220)
T cd04126 71 VILTYDVSN---------VQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTL 139 (220)
T ss_pred EEEEEECCC---------HHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCH
Confidence 889999873 22333333222222221 1235688999999998641 11 01
Q ss_pred HHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 318 DGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 318 ~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
++..++..... .+..+.+.+.+. ....++.+||+++ .++++++..+.+.+..
T Consensus 140 ~e~~~~a~~~~-~~~~~~~~~~~~---~~~~~~E~SA~tg-~~V~elf~~i~~~~~~ 191 (220)
T cd04126 140 EDAKAFYKRIN-KYKMLDEDLSPA---AEKMCFETSAKTG-YNVDELFEYLFNLVLP 191 (220)
T ss_pred HHHHHHHHHhC-cccccccccccc---ccceEEEeeCCCC-CCHHHHHHHHHHHHHH
Confidence 11112211110 000001111110 0125789999999 9999999988866543
No 474
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.13 E-value=1.1e-10 Score=115.98 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=108.0
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCC------CCC------ccccccceEEEEeCCCccEEEEecC
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIA------SYP------FTTIKPNVGVITFDDFRKMSVADLP 232 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~------~~~------~tTl~p~~G~v~~~~~~~~~i~D~P 232 (654)
..++++++++.++.++|+|+||||||||++.|+|..++.. +.+ ...+...+|.+.+++..++.-.-+.
T Consensus 19 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~ 98 (235)
T COG1122 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVE 98 (235)
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHH
Confidence 3468899999999999999999999999999999755432 212 3345667788888776544332222
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----ccc
Q psy1086 233 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKM 308 (654)
Q Consensus 233 Gl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~ 308 (654)
..+.+...+.++..+ ...++.+-++..+... +..+.+...+|++++++.+++..|+.+|.++++ +.+
T Consensus 99 ~evafg~~n~g~~~~--e~~~rv~~~l~~vgl~-------~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~L 169 (235)
T COG1122 99 DEVAFGLENLGLPRE--EIEERVAEALELVGLE-------ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169 (235)
T ss_pred HHHhhchhhcCCCHH--HHHHHHHHHHHHcCch-------hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCC
Confidence 334455566666554 2334455555555554 334667788999999999999999999999999 788
Q ss_pred CccchHhHHHHHHHHHh
Q psy1086 309 DVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 309 D~~~~~~~~~~l~~~~~ 325 (654)
|.....+..+.+.+...
T Consensus 170 D~~~~~~l~~~l~~L~~ 186 (235)
T COG1122 170 DPKGRRELLELLKKLKE 186 (235)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 88877776666665544
No 475
>KOG0090|consensus
Probab=99.12 E-value=1.6e-09 Score=102.23 Aligned_cols=175 Identities=22% Similarity=0.364 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh---
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE--- 501 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~--- 501 (654)
..|.++|..++|||+|+-+|...... ...+...+..+...+++. ...++|.|| +..++.....++.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~---~TvtSiepn~a~~r~gs~-~~~LVD~PG-------H~rlR~kl~e~~~~~~ 107 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR---GTVTSIEPNEATYRLGSE-NVTLVDLPG-------HSRLRRKLLEYLKHNY 107 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc---CeeeeeccceeeEeecCc-ceEEEeCCC-------cHHHHHHHHHHccccc
Confidence 46899999999999999999876221 112335566777777765 579999999 6667777888887
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh---HHHHHHHHHHHHhhHhh
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~---~~v~~~~~~~~~~~~~~ 578 (654)
.+.++++|+|+..+ .++.-+.-..+++-+.........+|++|++||.|+..+ ..+.+.++.++..+++.
T Consensus 108 ~akaiVFVVDSa~f-------~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~s 180 (238)
T KOG0090|consen 108 SAKAIVFVVDSATF-------LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRES 180 (238)
T ss_pred cceeEEEEEecccc-------chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHH
Confidence 79999999998854 333333333444433322223456899999999998644 33445555544443332
Q ss_pred hc---cCCC-----CCCc----c--cc---c-cccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 579 IH---KYPE-----EFQP----E--KV---I-KFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 579 ~~---~~~~-----~~~~----~--~~---~-~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.- +... .+.. + +| . ..+.+.+.|++++ +++++-+.|++.
T Consensus 181 Rsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~--~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 181 RSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG--EIDQWESWIREA 237 (238)
T ss_pred HhhhhccccccccccccccccccccchhhcccceeEEeecccCcC--ChHHHHHHHHHh
Confidence 21 1100 0000 0 00 1 3445788999987 599988888764
No 476
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.12 E-value=6.9e-10 Score=113.35 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=88.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh--h
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV--E 501 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~--~ 501 (654)
.+|+++|.+|+||||++|+|++...+. +...+.+..+......+++ .++.+|||||+.+..............++ .
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G-~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~ 117 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG-FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGK 117 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-eEEEEEECCCCCchHHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999987643 3444445554444445555 58999999999875432222211111122 2
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh--HHHHHHHHHHHHhhHhhh
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA--QEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~ 579 (654)
..|++++|.+++.. .+++.++..++.+...+.. ....+.|||++++|.... ....+++.+.-+.+++.+
T Consensus 118 g~DvVLyV~rLD~~--R~~~~DkqlLk~Iqe~FG~-------~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~~i 188 (313)
T TIGR00991 118 TIDVLLYVDRLDAY--RVDTLDGQVIRAITDSFGK-------DIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLRVI 188 (313)
T ss_pred CCCEEEEEeccCcc--cCCHHHHHHHHHHHHHhhh-------hhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHHHH
Confidence 68999999655421 1222233333333333221 123689999999997632 234444544455556665
Q ss_pred ccC
Q psy1086 580 HKY 582 (654)
Q Consensus 580 ~~~ 582 (654)
++.
T Consensus 189 ~~~ 191 (313)
T TIGR00991 189 HSG 191 (313)
T ss_pred HHH
Confidence 543
No 477
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.12 E-value=5.2e-10 Score=107.90 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=89.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccce--EEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV--GVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~--G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|+++|.+|+|||||++.+.+... ...|..| ..... -.+..++. ..+.+||++|..... ......+..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T-~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~~~~~~~~~ 72 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQT-LGVNFMEKTISIRGTEITFSIWDLGGQREFI-------NMLPLVCND 72 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCc-cceEEEEEEEEECCEEEEEEEEeCCCchhHH-------HhhHHHCcC
Confidence 589999999999999999976432 2334332 22222 23444432 257899999864321 112223456
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch----H--hHHHHHHHHHhccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA----Q--EIYDGIRDTLHNLK 328 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~----~--~~~~~l~~~~~~l~ 328 (654)
++.+++|+|++.. ..+..+..+..++..+.. ...| ++|.||+|+... + ...++..++.+.
T Consensus 73 a~~iilv~D~t~~---------~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~-- 138 (182)
T cd04128 73 AVAILFMFDLTRK---------STLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA-- 138 (182)
T ss_pred CCEEEEEEECcCH---------HHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH--
Confidence 7788888898641 233333333333332221 2344 788999998521 1 011111111111
Q ss_pred cccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 329 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 329 ~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+ ..++++||+++ .|++++++.+.+.+.
T Consensus 139 ---------------~~-~~~~e~SAk~g-~~v~~lf~~l~~~l~ 166 (182)
T cd04128 139 ---------------MK-APLIFCSTSHS-INVQKIFKIVLAKAF 166 (182)
T ss_pred ---------------cC-CEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 11 25799999999 999999999876553
No 478
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=2.4e-10 Score=111.04 Aligned_cols=130 Identities=21% Similarity=0.217 Sum_probs=87.7
Q ss_pred ccceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecC-ccccc--cc
Q psy1086 163 KGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLP-GLIEG--AH 239 (654)
Q Consensus 163 ~Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~P-Gl~~~--~~ 239 (654)
.--.++|+|++..|++|||||.||||||||++.|+| ...|+.|.+..++. -..+.++. |+... ..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG-----------i~~Pt~G~v~v~G~-v~~li~lg~Gf~pelTGr 107 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG-----------IYKPTSGKVKVTGK-VAPLIELGAGFDPELTGR 107 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC-----------ccCCCCceEEEcce-EehhhhcccCCCcccchH
Confidence 334589999999999999999999999999999999 58899999998873 12244442 22211 11
Q ss_pred ccccchHHHHH--HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeeccc
Q psy1086 240 RNLGMGHQFLR--HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKM 308 (654)
Q Consensus 240 ~~~~l~~~~l~--~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~ 308 (654)
+|..+...++. .-+-.+..-.+++.+. +++..+.|+.++|.++.-+..|+-+..-+|.+++++..
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaE----LG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAE----LGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHH----HHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 22222222220 0111122333444442 12344789999999999999999999999999998653
No 479
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.12 E-value=4.5e-10 Score=111.65 Aligned_cols=155 Identities=22% Similarity=0.177 Sum_probs=91.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEE--EEeCC-CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGV--ITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~--v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|++||.+|+|||||++.+...... ..|.. |....... +..+. ...+.+||+||...+. .+. ......
T Consensus 15 Ki~vvG~~gvGKTsli~~~~~~~f~-~~~~~-tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~---~~~~~~ 85 (219)
T PLN03071 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEP-TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----GLR---DGYYIH 85 (219)
T ss_pred EEEEECcCCCCHHHHHHHHhhCCCC-CccCC-ccceeEEEEEEEECCeEEEEEEEECCCchhhh----hhh---HHHccc
Confidence 7999999999999999987653321 22221 22222222 22222 2368899999964321 111 123445
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++.+++|+|++. ...+..+..+..++..+ ....|.++|.||+|+.......+.+ +....
T Consensus 86 ~~~~ilvfD~~~---------~~s~~~i~~w~~~i~~~---~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-------- 144 (219)
T PLN03071 86 GQCAIIMFDVTA---------RLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-------- 144 (219)
T ss_pred ccEEEEEEeCCC---------HHHHHHHHHHHHHHHHh---CCCCcEEEEEEchhhhhccCCHHHH-HHHHh--------
Confidence 677888888873 22333333333333322 3467999999999985432111111 11110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+ ..++.+||+++ .|+++++.++.+.+.
T Consensus 145 ---------~~-~~~~e~SAk~~-~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 145 ---------KN-LQYYEISAKSN-YNFEKPFLYLARKLA 172 (219)
T ss_pred ---------cC-CEEEEcCCCCC-CCHHHHHHHHHHHHH
Confidence 01 25789999999 999999999886654
No 480
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.11 E-value=3.3e-10 Score=108.58 Aligned_cols=167 Identities=15% Similarity=0.128 Sum_probs=94.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|++||.+|+|||||++.+..... ...|..|......-.+.+++. ..+.+||++|...... +. ..+...++
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~a~ 74 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR----LR---PLSYPQTD 74 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh----hh---hhhcccCC
Confidence 689999999999999999986432 344544443222223444331 2578999999743221 11 12334577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHH-HHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~-~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++. ...++.+. .+..++... ....|.++|.||+|+.......+.+...... .+ ..
T Consensus 75 ~~ilv~d~~~---------~~s~~~~~~~w~~~i~~~---~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~---~v--~~ 137 (175)
T cd01874 75 VFLVCFSVVS---------PSSFENVKEKWVPEITHH---CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK---PI--TP 137 (175)
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHHh---CCCCCEEEEEECHhhhhChhhHHHhhhccCC---Cc--CH
Confidence 8888888863 22333332 123333222 2367999999999986543322222110000 00 00
Q ss_pred Cccc-hhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 336 EEFQ-PEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 336 ~~~~-~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
++.. -....+...++.+||+++ .|++++++.+.+
T Consensus 138 ~~~~~~a~~~~~~~~~e~SA~tg-~~v~~~f~~~~~ 172 (175)
T cd01874 138 ETGEKLARDLKAVKYVECSALTQ-KGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHHHHhCCcEEEEecCCCC-CCHHHHHHHHHH
Confidence 0000 000111236899999999 999999988764
No 481
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.2e-10 Score=108.57 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=105.0
Q ss_pred eeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCC-----------CCCCCccccccceEEEEeCC--CccEEEEecCc
Q psy1086 167 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-----------IASYPFTTIKPNVGVITFDD--FRKMSVADLPG 233 (654)
Q Consensus 167 ~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~-----------i~~~~~tTl~p~~G~v~~~~--~~~~~i~D~PG 233 (654)
.++++++..|.--.+||||||||||||+.+++..+. ++.|+...+......+.+.+ ..++++-|+-+
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~ 97 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVG 97 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhh
Confidence 467788888888999999999999999999986332 12222222222222222111 12467777777
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccC
Q psy1086 234 LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMD 309 (654)
Q Consensus 234 l~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D 309 (654)
+-.++...-.+..+-..++.++--.+.+-|+. ++.+.++|++++++.-.+..+.+...++++ |.+|
T Consensus 98 FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~----------dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLD 167 (252)
T COG4604 98 FGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS----------DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167 (252)
T ss_pred cCCCcccCCCCchHHHHHHHHHHHHhcccchH----------HHhHHhcccchhhhhhhheeeeccCcEEEecCcccccc
Confidence 76666554445566667776664444444444 567789999999999999888999999988 9999
Q ss_pred ccchHhHHHHHHHHHhcccc
Q psy1086 310 VEGAQEIYDGIRDTLHNLKD 329 (654)
Q Consensus 310 ~~~~~~~~~~l~~~~~~l~~ 329 (654)
+.+.......++...+++..
T Consensus 168 mkHsv~iMk~Lrrla~el~K 187 (252)
T COG4604 168 MKHSVQIMKILRRLADELGK 187 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCC
Confidence 98887777777766665543
No 482
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.11 E-value=7.5e-10 Score=111.53 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=78.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc---cccchhHHHHHHh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH---RNLGMGHQFLRHV 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~---~~~~~~~~~~~~~ 500 (654)
.+|+++|.+|+||||++|.+++..... +..++.|.........+++ .++.+|||||+.+... ..........+++
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g-~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l 110 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG-FKLNIIDTPGLLESVMDQRVNRKILSSIKRYL 110 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-eEEEEEECCCcCcchhhHHHHHHHHHHHHHHH
Confidence 589999999999999999999987644 3455666666665666665 5899999999986632 1111222233444
Q ss_pred h--cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccC
Q psy1086 501 E--RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG 560 (654)
Q Consensus 501 ~--~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~ 560 (654)
. ..|++++|..++.. .+...+.. .++.+.+.+. ...-.++++|+||+|...
T Consensus 111 ~~~~idvIL~V~rlD~~--r~~~~d~~---llk~I~e~fG----~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 111 KKKTPDVVLYVDRLDMY--RRDYLDLP---LLRAITDSFG----PSIWRNAIVVLTHAASSP 163 (249)
T ss_pred hccCCCEEEEEEcCCCC--CCCHHHHH---HHHHHHHHhC----hhhHhCEEEEEeCCccCC
Confidence 3 57888888766521 11111111 2221111111 112367999999999854
No 483
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.10 E-value=4.3e-10 Score=109.20 Aligned_cols=171 Identities=23% Similarity=0.226 Sum_probs=91.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+.+.... ..|..|........+..++. ..+.+||+||...... +.. .....++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----l~~---~~~~~a~ 73 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR----LRS---LSYADTD 73 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc----ccc---ccccCCC
Confidence 6899999999999999999875332 22332322222223333331 3578999999643221 111 1234466
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++|.|+++. ..+..+.. ..+..+.......|.++|.||+|+.......+... ..... .+ ....
T Consensus 74 ~~ilv~dv~~~---------~sf~~~~~--~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~-~~~~~--~v-~~~~ 138 (189)
T cd04134 74 VIMLCFSVDSP---------DSLENVES--KWLGEIREHCPGVKLVLVALKCDLREARNERDDLQ-RYGKH--TI-SYEE 138 (189)
T ss_pred EEEEEEECCCH---------HHHHHHHH--HHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHh-hccCC--CC-CHHH
Confidence 77777777631 22332221 11222222234679999999999975433221110 00000 00 0000
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
........+...++.+||+++ .|+++++..+.+.+
T Consensus 139 ~~~~~~~~~~~~~~e~SAk~~-~~v~e~f~~l~~~~ 173 (189)
T cd04134 139 GLAVAKRINALRYLECSAKLN-RGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHHHcCCCEEEEccCCcC-CCHHHHHHHHHHHH
Confidence 000000111125789999999 99999999887654
No 484
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=5.5e-10 Score=107.60 Aligned_cols=146 Identities=19% Similarity=0.255 Sum_probs=89.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc--------------c-EEEEe
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR--------------K-MSVAD 230 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~--------------~-~~i~D 230 (654)
..+|+|+++.|+.|+|||++||||||||++|.| ..+|..|.+.+++.. + -.+..
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng-----------l~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ 88 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-----------LVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc-----------ccCCCcceEEecccchhccchHHHHHHHHhceeEec
Confidence 457888888888999999999999999999999 466777777766521 0 02223
Q ss_pred cCccccccc--ccc--------cchHHHHHHH--HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcC
Q psy1086 231 LPGLIEGAH--RNL--------GMGHQFLRHV--ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 298 (654)
Q Consensus 231 ~PGl~~~~~--~~~--------~l~~~~l~~i--~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~ 298 (654)
-|.++.... +|. ...+.++... +....++..++-.+ +.+..-...+++|++++++..+++.|.+
T Consensus 89 ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervg----i~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 89 QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVG----ILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcC----cHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 333332110 110 0111111110 11112222222111 1122234557899999999999999999
Q ss_pred cceeEee----cccCccchHhHHHHHHHHHhc
Q psy1086 299 KPIILLV----NKMDVEGAQEIYDGIRDTLHN 326 (654)
Q Consensus 299 ~P~ilvl----NK~D~~~~~~~~~~l~~~~~~ 326 (654)
+|.+++. +-+|........+.+++.-++
T Consensus 165 ~pkiILADEPvasLDp~~a~~Vm~~l~~in~~ 196 (258)
T COG3638 165 QPKIILADEPVASLDPESAKKVMDILKDINQE 196 (258)
T ss_pred CCCEEecCCcccccChhhHHHHHHHHHHHHHH
Confidence 9999998 778888777777777665443
No 485
>KOG0077|consensus
Probab=99.09 E-value=8.4e-10 Score=99.71 Aligned_cols=166 Identities=19% Similarity=0.229 Sum_probs=107.1
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.-+++++|-.|+|||||++.|-..+. ....| |.+|.+..+.+.+. +++.+|..| +...++-+..|+..+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvP--TlHPTSE~l~Ig~m-~ftt~DLGG-------H~qArr~wkdyf~~v 88 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVP--TLHPTSEELSIGGM-TFTTFDLGG-------HLQARRVWKDYFPQV 88 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccc-cccCC--CcCCChHHheecCc-eEEEEcccc-------HHHHHHHHHHHHhhh
Confidence 35899999999999999999877543 33333 67788888888875 899999999 555777888999999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhh--cccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
|++++.+|+.+. |.+.+...+++... ....+.|++|++||+|.+.+- -.+++... ..+...
T Consensus 89 ~~iv~lvda~d~------------er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~-se~~l~~~----l~l~~~ 151 (193)
T KOG0077|consen 89 DAIVYLVDAYDQ------------ERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA-SEDELRFH----LGLSNF 151 (193)
T ss_pred ceeEeeeehhhH------------HHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc-cHHHHHHH----HHHHHH
Confidence 999999999842 22223333333222 233689999999999998652 11111111 111112
Q ss_pred CCCC---CCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 582 YPEE---FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 582 ~~~~---~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
|... ....+..+-..+|.+|...++ +--+-|..+..
T Consensus 152 t~~~~~v~~~~~~~rp~evfmcsi~~~~-gy~e~fkwl~q 190 (193)
T KOG0077|consen 152 TTGKGKVNLTDSNVRPLEVFMCSIVRKM-GYGEGFKWLSQ 190 (193)
T ss_pred hcccccccccCCCCCeEEEEEEEEEccC-ccceeeeehhh
Confidence 2110 111122333457888888877 76555555443
No 486
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.09 E-value=2.3e-10 Score=111.29 Aligned_cols=151 Identities=18% Similarity=0.216 Sum_probs=87.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCC------CC----------CCCccccccceEEEEeCCCccEEEEecCccccccccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPK------IA----------SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN 241 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~------i~----------~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~ 241 (654)
.|+++|..++|||||+++|++.... .. ....+|.....-.+.+.+ .++.++||||...
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~-~~i~~iDtPG~~~----- 77 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN-RHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC-eEEEEEECcCHHH-----
Confidence 5899999999999999999864110 00 123445554443444333 5799999999642
Q ss_pred ccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcc-eeEeecccCccchHhHHHHH
Q psy1086 242 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDGI 320 (654)
Q Consensus 242 ~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P-~ilvlNK~D~~~~~~~~~~l 320 (654)
+.....+.+..+|.+++|+|+... +.....+...+... ...| .++++||+|+....+..+.+
T Consensus 78 --~~~~~~~~~~~~D~~ilVvda~~g--------------~~~~~~~~~~~~~~-~~~~~iIvviNK~D~~~~~~~~~~~ 140 (195)
T cd01884 78 --YIKNMITGAAQMDGAILVVSATDG--------------PMPQTREHLLLARQ-VGVPYIVVFLNKADMVDDEELLELV 140 (195)
T ss_pred --HHHHHHHHhhhCCEEEEEEECCCC--------------CcHHHHHHHHHHHH-cCCCcEEEEEeCCCCCCcHHHHHHH
Confidence 344456667778888999998621 01111222223222 3456 66888999986444333333
Q ss_pred HHHHhccccccccCCCccchhhhcccceEEEeecccCccch
Q psy1086 321 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDV 361 (654)
Q Consensus 321 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i 361 (654)
.+.+......+ .+. ....+++++||.++ .+.
T Consensus 141 ~~~i~~~l~~~-g~~--------~~~v~iipiSa~~g-~n~ 171 (195)
T cd01884 141 EMEVRELLSKY-GFD--------GDNTPIVRGSALKA-LEG 171 (195)
T ss_pred HHHHHHHHHHh-ccc--------ccCCeEEEeeCccc-cCC
Confidence 33332211100 000 01136999999998 764
No 487
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.09 E-value=6.5e-10 Score=112.17 Aligned_cols=177 Identities=20% Similarity=0.231 Sum_probs=113.5
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc---------------------------------cCCCcccccceeEEEEeC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI---------------------------------ASYPFTTIKPNVGVITFD 469 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~---------------------------------~~~~~~t~~~~~~~v~~~ 469 (654)
...|+..+|.-.-|||||+-+|+.....+ .-+.++|++.....+..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 34688999999999999999987643321 014577887777666655
Q ss_pred CCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCE
Q psy1086 470 DFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPI 549 (654)
Q Consensus 470 ~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~ 549 (654)
- +++++.||||. +++.+.+..-...||++++++|+. .++.+|.+... .+-.. ..-+.+
T Consensus 85 K-RkFIiADTPGH-------eQYTRNMaTGASTadlAIlLVDAR---~Gvl~QTrRHs----~I~sL-------LGIrhv 142 (431)
T COG2895 85 K-RKFIIADTPGH-------EQYTRNMATGASTADLAILLVDAR---KGVLEQTRRHS----FIASL-------LGIRHV 142 (431)
T ss_pred c-ceEEEecCCcH-------HHHhhhhhcccccccEEEEEEecc---hhhHHHhHHHH----HHHHH-------hCCcEE
Confidence 4 68999999994 434433334456899999999997 34444433211 11111 122577
Q ss_pred EEEEeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHhh
Q psy1086 550 ILLVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQ 628 (654)
Q Consensus 550 iiv~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~~ 628 (654)
|++.|||||++- +++.+++.+.+..+...+.- ....++|+||..|. ||..-- ..+.|-+-
T Consensus 143 vvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~-----------~~~~~IPiSAl~GD-NV~~~s-------~~mpWY~G 203 (431)
T COG2895 143 VVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGL-----------KDVRFIPISALLGD-NVVSKS-------ENMPWYKG 203 (431)
T ss_pred EEEEeeecccccCHHHHHHHHHHHHHHHHHcCC-----------CcceEEechhccCC-cccccc-------cCCCcccC
Confidence 888899999975 55777777766666555422 12257999999999 876432 23344444
Q ss_pred HhHHHHHHHHHH
Q psy1086 629 EMVDRELELVKK 640 (654)
Q Consensus 629 ~~~~~~~~~~~~ 640 (654)
|.+=+++|.++.
T Consensus 204 ptLLe~LE~v~i 215 (431)
T COG2895 204 PTLLEILETVEI 215 (431)
T ss_pred ccHHHHHhhccc
Confidence 444444444443
No 488
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.09 E-value=4.5e-10 Score=117.28 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=88.9
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc----------c-EEEEecCc
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------K-MSVADLPG 233 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~----------~-~~i~D~PG 233 (654)
-.++|+|+++.|+.+||+|+||||||||+++|+|. +.|..|.+.+++.. . ..+.+-|+
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-----------~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~ 90 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-----------THPDAGSISLCGEPVPSRARHARQRVGVVPQFDN 90 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEecccchHHHHhcEEEEeccCc
Confidence 34678888888889999999999999999999994 55677777665421 0 12222233
Q ss_pred ccccc--cccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee-
Q psy1086 234 LIEGA--HRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV- 305 (654)
Q Consensus 234 l~~~~--~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl- 305 (654)
+.... .++..+...+. ...++..-++..+++ .+..+..+..+|.+++++..++.++..+|.++++
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD 163 (306)
T PRK13537 91 LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163 (306)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 32211 11111000000 001112222222333 2334667889999999999999999999999999
Q ss_pred ---cccCccchHhHHHHHHHH
Q psy1086 306 ---NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 306 ---NK~D~~~~~~~~~~l~~~ 323 (654)
+.+|.....+.++.+.+.
T Consensus 164 EPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 164 EPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 889987777666655544
No 489
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.08 E-value=3.3e-09 Score=105.73 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=83.0
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCc--cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHH
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKI--ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRH 499 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~--~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~ 499 (654)
..+..|+++|.+|+|||||++.+++..... ....++ ..+......++.++||||.. ..+...
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~~~~~~~i~~vDtPg~~----------~~~l~~ 100 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVVTGKKRRLTFIECPNDI----------NAMIDI 100 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEEecCCceEEEEeCCchH----------HHHHHH
Confidence 345679999999999999999998752211 111111 01122234589999999832 334466
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEE-EEEeCCCccChHHHHHHHHHHHHhhHhh
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII-LLVNKMDVEGAQEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~i-iv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 578 (654)
++.+|++++|+|++.. +..+ . ..+...+. ..+.|.+ +|+||+|+.+.....+.+.+ ++++.
T Consensus 101 ak~aDvVllviDa~~~---~~~~------~-~~i~~~l~-----~~g~p~vi~VvnK~D~~~~~~~~~~~~~---~l~~~ 162 (225)
T cd01882 101 AKVADLVLLLIDASFG---FEME------T-FEFLNILQ-----VHGFPRVMGVLTHLDLFKKNKTLRKTKK---RLKHR 162 (225)
T ss_pred HHhcCEEEEEEecCcC---CCHH------H-HHHHHHHH-----HcCCCeEEEEEeccccCCcHHHHHHHHH---HHHHH
Confidence 7899999999999732 1111 1 11222221 1356754 59999999754322222222 22221
Q ss_pred hccCCCCCCccccccccceEEEeeecCC
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNS 606 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~ 606 (654)
+.. .+..+.+++++||++.-
T Consensus 163 ~~~--------~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 163 FWT--------EVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHH--------hhCCCCcEEEEeeccCC
Confidence 110 11345689999999864
No 490
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=105.62 Aligned_cols=163 Identities=15% Similarity=0.214 Sum_probs=107.3
Q ss_pred cceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE--EEEecCccccccccc
Q psy1086 164 GEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM--SVADLPGLIEGAHRN 241 (654)
Q Consensus 164 Ge~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~--~i~D~PGl~~~~~~~ 241 (654)
--.++|+|++..|.-.||+|+|||||||.+++|.| -+.|..|.+.|++. .+ .+.|--|+. .+.
T Consensus 16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILg-----------lle~~~G~I~~~g~-~~~~~~~~rIGyL---PEE 80 (300)
T COG4152 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG-----------LLEPTEGEITWNGG-PLSQEIKNRIGYL---PEE 80 (300)
T ss_pred eeecceeeeecCCeEEEeecCCCCCccchHHHHhc-----------cCCccCceEEEcCc-chhhhhhhhcccC---hhh
Confidence 34456777777777899999999999999999999 48899999999874 22 111112221 122
Q ss_pred ccchHH--------HHH---------HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEe
Q psy1086 242 LGMGHQ--------FLR---------HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 304 (654)
Q Consensus 242 ~~l~~~--------~l~---------~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilv 304 (654)
+++... |+. ...+.+..+.-+++. ....+.++++|.++++..+|..++..+|.+++
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-------~~~~~kIk~LSKGnqQKIQfisaviHePeLlI 153 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-------GKKTKKIKELSKGNQQKIQFISAVIHEPELLI 153 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-------ccccchHHHhhhhhhHHHHHHHHHhcCCCEEE
Confidence 222110 111 111223333334443 33467889999999999999999999999999
Q ss_pred e----cccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 305 V----NKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 305 l----NK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
+ +-+|..+.+-+.+.+.+..+. ...+..|.+.- +.+++|++.+.
T Consensus 154 LDEPFSGLDPVN~elLk~~I~~lk~~--------------------GatIifSsH~M-e~vEeLCD~ll 201 (300)
T COG4152 154 LDEPFSGLDPVNVELLKDAIFELKEE--------------------GATIIFSSHRM-EHVEELCDRLL 201 (300)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhc--------------------CCEEEEecchH-HHHHHHhhhhh
Confidence 9 778887655433333332221 35667777776 89999998876
No 491
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=1.1e-09 Score=108.25 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=86.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-------cE-EEEecCccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------KM-SVADLPGLIEG 237 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-------~~-~i~D~PGl~~~ 237 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.+.+...
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~ 84 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPK 84 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCCchhHHHHccEEEeccCCcCCcC
Confidence 4678888888889999999999999999999995 44666777665421 11 11222222221
Q ss_pred cc--ccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----c
Q psy1086 238 AH--RNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----N 306 (654)
Q Consensus 238 ~~--~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----N 306 (654)
.. ++..+...+. ...+++.-++..+++. +........+|.+++++..++..+...|.++++ +
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 85 MKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-------EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-------HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 11 1110100000 0011112222222221 223456788999999999999999999999998 7
Q ss_pred ccCccchHhHHHHHHHH
Q psy1086 307 KMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 307 K~D~~~~~~~~~~l~~~ 323 (654)
.+|.....+..+.+.+.
T Consensus 158 ~LD~~~~~~~~~~l~~~ 174 (210)
T cd03269 158 GLDPVNVELLKDVIREL 174 (210)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88877666665555543
No 492
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.08 E-value=6.7e-10 Score=104.21 Aligned_cols=132 Identities=21% Similarity=0.251 Sum_probs=82.4
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCcc----------E-EEEecCcc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRK----------M-SVADLPGL 234 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~----------~-~i~D~PGl 234 (654)
.++|+|+.+.|+.+||+|+|||||||+|+.|+. -+.|..|.+..++... + ++.+--|+
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat-----------lL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~gl 86 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT-----------LLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHH-----------hccCCCceEEEeecccccChHHHhhhcceecCCcCh
Confidence 467888888888999999999999999999998 4888999888765210 1 11122222
Q ss_pred ccc--ccccccch--------HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEe
Q psy1086 235 IEG--AHRNLGMG--------HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 304 (654)
Q Consensus 235 ~~~--~~~~~~l~--------~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilv 304 (654)
... +.++..+. .+..+.+++..-.+-+.+. .+.-+..+|.++++...+++++..+|.+++
T Consensus 87 Y~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~----------~~rRv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 87 YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY----------LDRRVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH----------HHHHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 211 11111000 0011111111111112222 244567899999999999999999999999
Q ss_pred e----cccCccchHhHHH
Q psy1086 305 V----NKMDVEGAQEIYD 318 (654)
Q Consensus 305 l----NK~D~~~~~~~~~ 318 (654)
+ +-+|........+
T Consensus 157 lDEP~sGLDi~~~r~~~d 174 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHD 174 (245)
T ss_pred EcCCCCCccHHHHHHHHH
Confidence 9 7788765544333
No 493
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.07 E-value=3.5e-10 Score=127.01 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=99.1
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+.|+++|.+|+|||||+++|.+.......++..|.....-.+.+++...+.++||||...+. ....+....+
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-------~~r~rga~~a 159 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-------SMRARGAKVT 159 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchh-------hHHHhhhccC
Confidence 368999999999999999999986554445555665544445556554479999999965432 1223445567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
|.+++|+|+... ......+. + .... ....|.++++||+|+.... .+.+.+.+.....
T Consensus 160 DiaILVVda~dg------v~~qT~e~---i-----~~~~-~~~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~------ 216 (587)
T TIGR00487 160 DIVVLVVAADDG------VMPQTIEA---I-----SHAK-AANVPIIVAINKIDKPEAN--PDRVKQELSEYGL------ 216 (587)
T ss_pred CEEEEEEECCCC------CCHhHHHH---H-----HHHH-HcCCCEEEEEECcccccCC--HHHHHHHHHHhhh------
Confidence 778888887631 01111111 1 1111 2578999999999986432 1222222221100
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
.+..+.....++++||+++ +|++++++.+.
T Consensus 217 ---~~~~~~~~~~~v~iSAktG-eGI~eLl~~I~ 246 (587)
T TIGR00487 217 ---VPEDWGGDTIFVPVSALTG-DGIDELLDMIL 246 (587)
T ss_pred ---hHHhcCCCceEEEEECCCC-CChHHHHHhhh
Confidence 0011111136899999999 99999999876
No 494
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.07 E-value=2.5e-10 Score=115.06 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccc
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 331 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i 331 (654)
+..+|.++.|.|+... . ..+..+.+.+..... ...|.++|+||+|+........+..+.+...
T Consensus 34 ~~n~D~viiV~d~~~p--------~---~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~---- 96 (245)
T TIGR00157 34 VANIDQIVIVSSAVLP--------E---LSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNI---- 96 (245)
T ss_pred cccCCEEEEEEECCCC--------C---CCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHC----
Confidence 3445667777777521 1 112223343432221 5688899999999965433222222222210
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCC
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRK 411 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 411 (654)
+ ..++.+||+++ ++++++++.+..
T Consensus 97 -------------g-~~v~~~SAktg-~gi~eLf~~l~~----------------------------------------- 120 (245)
T TIGR00157 97 -------------G-YQVLMTSSKNQ-DGLKELIEALQN----------------------------------------- 120 (245)
T ss_pred -------------C-CeEEEEecCCc-hhHHHHHhhhcC-----------------------------------------
Confidence 1 26899999999 999888765531
Q ss_pred CcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCc----cC----CCcccccceeEEEEeCCCceEEEEecCCCC
Q psy1086 412 GEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKI----AS----YPFTTIKPNVGVITFDDFRKMSVADLPGLI 483 (654)
Q Consensus 412 ~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~----~~----~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~ 483 (654)
..++++|.+|||||||+|.+++..... +. ...||++.... .+.+ ..++||||+.
T Consensus 121 -------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~--~l~~---~~liDtPG~~ 182 (245)
T TIGR00157 121 -------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELF--HFHG---GLIADTPGFN 182 (245)
T ss_pred -------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEE--EcCC---cEEEeCCCcc
Confidence 147899999999999999999864432 11 12355555443 3343 3799999987
Q ss_pred CCC
Q psy1086 484 EGA 486 (654)
Q Consensus 484 ~~~ 486 (654)
...
T Consensus 183 ~~~ 185 (245)
T TIGR00157 183 EFG 185 (245)
T ss_pred ccC
Confidence 654
No 495
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.07 E-value=8.7e-10 Score=109.42 Aligned_cols=141 Identities=21% Similarity=0.194 Sum_probs=85.9
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc--------------c-EEEE
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR--------------K-MSVA 229 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~--------------~-~~i~ 229 (654)
-..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. . ..+.
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~ 86 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI-----------EKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVF 86 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEehhhcChhHHHHHHHhceEEe
Confidence 35688899999999999999999999999999995 34556666554310 0 0111
Q ss_pred ecCcccccc--cccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCccee
Q psy1086 230 DLPGLIEGA--HRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 302 (654)
Q Consensus 230 D~PGl~~~~--~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~i 302 (654)
+.|.++... .++..+..... ...++...++..+++. +..+.....+|.+++++..+++++..+|.+
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 87 QDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-------GKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred cCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-------hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 122222110 11111100000 0011112222222222 223456688999999999999999999999
Q ss_pred Eee----cccCccchHhHHHHHHHH
Q psy1086 303 LLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 303 lvl----NK~D~~~~~~~~~~l~~~ 323 (654)
+++ +.+|.....+..+.+.+.
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~ 184 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEF 184 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999 788887766666555544
No 496
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.07 E-value=5.7e-10 Score=106.57 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=91.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
++.++|.+|+|||||++.+.+. .....|+.|+.......+..++ ...+.+||+||........ ...+..++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~a~ 73 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTN-GYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR-------PLCYPDTD 73 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhC-CCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccc-------ccccCCCc
Confidence 5899999999999999999763 2344566555333333444443 1357899999974332211 11234567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.++++.|+... ..+.... ...+..+.......|.+++.||+|+.........+....+. .+ ....
T Consensus 74 ~~i~v~d~~~~---------~sf~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~v-~~~~ 138 (173)
T cd04130 74 VFLLCFSVVNP---------SSFQNIS--EKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEK---PV-SQSR 138 (173)
T ss_pred EEEEEEECCCH---------HHHHHHH--HHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCC---Cc-CHHH
Confidence 78888888631 1222221 11122222222457999999999986432211111100000 00 0000
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
...-....+...++++||+++ .|++++++.+.
T Consensus 139 ~~~~a~~~~~~~~~e~Sa~~~-~~v~~lf~~~~ 170 (173)
T cd04130 139 AKALAEKIGACEYIECSALTQ-KNLKEVFDTAI 170 (173)
T ss_pred HHHHHHHhCCCeEEEEeCCCC-CCHHHHHHHHH
Confidence 000000112236899999999 99999998764
No 497
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.07 E-value=2.5e-09 Score=111.47 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=65.8
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
.+.++||+|..... ......||.+++|.+... -..++...... ....-|+|
T Consensus 150 d~viieT~Gv~qs~----------~~i~~~aD~vlvv~~p~~------------gd~iq~~k~gi-------~E~aDIiV 200 (332)
T PRK09435 150 DVILVETVGVGQSE----------TAVAGMVDFFLLLQLPGA------------GDELQGIKKGI-------MELADLIV 200 (332)
T ss_pred CEEEEECCCCccch----------hHHHHhCCEEEEEecCCc------------hHHHHHHHhhh-------hhhhheEE
Confidence 68999999975211 123567999999986321 12222222211 11234899
Q ss_pred EeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 553 VNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 553 ~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
+||+|+.+......... ++...+...... ...+..|++++||++|+ ||++|++.|.+.+...
T Consensus 201 VNKaDl~~~~~a~~~~~----el~~~L~l~~~~----~~~w~~pVi~vSA~~g~-GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 201 INKADGDNKTAARRAAA----EYRSALRLLRPK----DPGWQPPVLTCSALEGE-GIDEIWQAIEDHRAAL 262 (332)
T ss_pred eehhcccchhHHHHHHH----HHHHHHhccccc----ccCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHh
Confidence 99999876432222111 111111111000 00123579999999999 9999999999987643
No 498
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.07 E-value=7e-10 Score=115.83 Aligned_cols=140 Identities=19% Similarity=0.256 Sum_probs=88.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc----------cE-EEEecCcc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------KM-SVADLPGL 234 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~----------~~-~i~D~PGl 234 (654)
..+++|++..|+.+||+|+||||||||+++|+|. +.|..|.+.+++.. .+ .+.+.+.+
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-----------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASV 77 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCHHHHHhhcEEecCCCCC
Confidence 4678888999999999999999999999999994 45667777765420 01 11222222
Q ss_pred ccccc--ccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee--
Q psy1086 235 IEGAH--RNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV-- 305 (654)
Q Consensus 235 ~~~~~--~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl-- 305 (654)
..... ++..+...+. ...++++.++..+++ .+..+..+..+|.+++++..++.++...|.++++
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-------GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 21111 1100000000 001122222333333 2334667789999999999999999999999999
Q ss_pred --cccCccchHhHHHHHHHH
Q psy1086 306 --NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 306 --NK~D~~~~~~~~~~l~~~ 323 (654)
+.+|........+.+.+.
T Consensus 151 Pt~gLD~~~~~~l~~~l~~~ 170 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRAL 170 (302)
T ss_pred CCcCCCHHHHHHHHHHHHHH
Confidence 888987766666655544
No 499
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=8.3e-10 Score=109.89 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=86.5
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------cE-EEEecCcccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------KM-SVADLPGLIEGA 238 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------~~-~i~D~PGl~~~~ 238 (654)
..+++|+++.|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|.++...
T Consensus 20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~ 88 (220)
T cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-----------ERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWL 88 (220)
T ss_pred EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccccCcEEEEecccccccCC
Confidence 4688899999999999999999999999999995 34556666654410 11 122223322211
Q ss_pred --cccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cc
Q psy1086 239 --HRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NK 307 (654)
Q Consensus 239 --~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK 307 (654)
.++..+...+. ...+++..++..+++. +..+.....+|.+++++..++.++...|.++++ +.
T Consensus 89 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~ 161 (220)
T cd03293 89 TVLDNVALGLELQGVPKAEARERAEELLELVGLS-------GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161 (220)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 11111111000 0011122222222221 223455678999999999999999999999999 78
Q ss_pred cCccchHhHHHHHHHH
Q psy1086 308 MDVEGAQEIYDGIRDT 323 (654)
Q Consensus 308 ~D~~~~~~~~~~l~~~ 323 (654)
+|........+.+.+.
T Consensus 162 LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 162 LDALTREQLQEELLDI 177 (220)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8887776666666544
No 500
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.06 E-value=1.1e-09 Score=115.74 Aligned_cols=240 Identities=19% Similarity=0.187 Sum_probs=126.4
Q ss_pred eEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-------------------cEEE
Q psy1086 168 AVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------------KMSV 228 (654)
Q Consensus 168 ~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-------------------~~~i 228 (654)
+|+|.++.|+.-+|+|.||||||||+++|.| ...|+.|.+.+++.. +|.+
T Consensus 22 ~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G-----------~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~L 90 (501)
T COG3845 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFG-----------LYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFML 90 (501)
T ss_pred ceeeeecCCcEEEEeccCCCCHHHHHHHHhC-----------cccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccc
Confidence 5566666666789999999999999999999 477888888876521 2333
Q ss_pred EecCcccccccccccchHH--------HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcc
Q psy1086 229 ADLPGLIEGAHRNLGMGHQ--------FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP 300 (654)
Q Consensus 229 ~D~PGl~~~~~~~~~l~~~--------~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P 300 (654)
+|+--.. +|.-++.. .....++. ..+.+.-++ .-+.+..+.+++.+++|+..+.+.|...|
T Consensus 91 v~~lTV~----ENiiLg~e~~~~~~~~~~~~~~~i---~~l~~~yGl----~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 91 VPTLTVA----ENIILGLEPSKGGLIDRRQARARI---KELSERYGL----PVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred ccccchh----hhhhhcCccccccccCHHHHHHHH---HHHHHHhCC----CCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 3332211 22212111 11111111 112222222 22345677889999999999999999999
Q ss_pred eeEeecccCc-cchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh----
Q psy1086 301 IILLVNKMDV-EGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL---- 375 (654)
Q Consensus 301 ~ilvlNK~D~-~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~---- 375 (654)
.++++...-. ....+ .+++.+.+.++... -..++.||.+-. .+.++.+.+. .+..-
T Consensus 160 ~iLILDEPTaVLTP~E-~~~lf~~l~~l~~~---------------G~tIi~ITHKL~--Ev~~iaDrvT-VLR~Gkvvg 220 (501)
T COG3845 160 RLLILDEPTAVLTPQE-ADELFEILRRLAAE---------------GKTIIFITHKLK--EVMAIADRVT-VLRRGKVVG 220 (501)
T ss_pred CEEEEcCCcccCCHHH-HHHHHHHHHHHHHC---------------CCEEEEEeccHH--HHHHhhCeeE-EEeCCeEEe
Confidence 9999733211 11222 22222222222110 024566664322 1111111100 00000
Q ss_pred --H-hHHHhhhhh-h--------hhhhHHHHhhCCCccccCCCcccCC---CcceeeeeeecccceEEEEcCCCCChhhH
Q psy1086 376 --A-EEEQEMVDR-E--------LELDSIIIAHGGAGGNAQNGWLGRK---GEELAVRLELKLIADIGLVGFPNAGKSTF 440 (654)
Q Consensus 376 --~-~~~~~~~~~-~--------~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~v~~~G~~~~GKstl 440 (654)
. ......... . ..........+..++...+.+.... ....++||+++.++-+++.|-.|-|-+-|
T Consensus 221 t~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL 300 (501)
T COG3845 221 TVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSEL 300 (501)
T ss_pred eecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHH
Confidence 0 000000000 0 0000001122333344444444332 23558999999999999999999999999
Q ss_pred HHHHHhcC
Q psy1086 441 LKAISRAR 448 (654)
Q Consensus 441 ~~~l~~~~ 448 (654)
+..+++..
T Consensus 301 ~eaisGlr 308 (501)
T COG3845 301 VEAISGLR 308 (501)
T ss_pred HHHHhCCC
Confidence 99999964
Done!