Query psy1086
Match_columns 654
No_of_seqs 616 out of 5167
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 20:18:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 1.4E-61 4.8E-66 509.2 25.5 304 42-374 1-330 (342)
2 1udx_A The GTP-binding protein 100.0 5.6E-60 1.9E-64 507.7 28.5 299 42-374 1-325 (416)
3 1mky_A Probable GTP-binding pr 100.0 2.1E-36 7.2E-41 330.7 22.2 344 177-623 2-356 (439)
4 2hjg_A GTP-binding protein ENG 100.0 2.9E-37 1E-41 337.2 14.0 339 177-623 4-350 (436)
5 4dcu_A GTP-binding protein ENG 100.0 4.7E-36 1.6E-40 329.6 14.6 340 177-624 24-371 (456)
6 4dkx_A RAS-related protein RAB 99.9 1.7E-24 5.7E-29 213.2 14.9 162 425-622 14-176 (216)
7 1lnz_A SPO0B-associated GTP-bi 99.9 2.3E-22 7.7E-27 211.1 14.6 186 411-622 145-330 (342)
8 2hxs_A RAB-26, RAS-related pro 99.9 1.1E-21 3.8E-26 186.2 13.7 162 425-620 7-171 (178)
9 3q85_A GTP-binding protein REM 99.9 2.7E-21 9.3E-26 181.9 15.9 164 425-622 3-167 (169)
10 3tkl_A RAS-related protein RAB 99.9 2.9E-21 1E-25 186.5 16.3 164 424-623 16-180 (196)
11 3tw8_B RAS-related protein RAB 99.9 3.2E-21 1.1E-25 183.3 15.9 164 424-624 9-173 (181)
12 2ew1_A RAS-related protein RAB 99.9 2.8E-21 9.7E-26 188.3 15.2 162 425-622 27-189 (201)
13 3cbq_A GTP-binding protein REM 99.9 5.1E-21 1.7E-25 185.5 16.8 163 425-621 24-187 (195)
14 2bme_A RAB4A, RAS-related prot 99.9 3.9E-21 1.3E-25 184.0 15.4 164 424-623 10-174 (186)
15 2bcg_Y Protein YP2, GTP-bindin 99.9 6.9E-21 2.4E-25 185.8 17.1 163 424-622 8-171 (206)
16 2a5j_A RAS-related protein RAB 99.9 7.5E-21 2.6E-25 183.3 17.0 162 425-622 22-184 (191)
17 2il1_A RAB12; G-protein, GDP, 99.9 5.5E-21 1.9E-25 184.5 16.0 162 425-621 27-189 (192)
18 1z08_A RAS-related protein RAB 99.9 4.7E-21 1.6E-25 180.3 14.9 160 425-620 7-167 (170)
19 2fu5_C RAS-related protein RAB 99.9 1.9E-21 6.3E-26 185.8 12.2 163 424-622 8-171 (183)
20 2hup_A RAS-related protein RAB 99.9 7.3E-21 2.5E-25 185.2 16.6 163 425-622 30-193 (201)
21 2iwr_A Centaurin gamma 1; ANK 99.9 1.4E-20 4.9E-25 178.7 18.2 158 425-622 8-169 (178)
22 1z2a_A RAS-related protein RAB 99.9 7.3E-21 2.5E-25 178.5 15.8 159 425-620 6-165 (168)
23 1z0j_A RAB-22, RAS-related pro 99.9 7.1E-21 2.4E-25 178.9 15.6 160 425-620 7-167 (170)
24 3dz8_A RAS-related protein RAB 99.9 3.2E-21 1.1E-25 185.9 13.3 164 423-622 22-186 (191)
25 3kkq_A RAS-related protein M-R 99.9 1.2E-20 4E-25 180.2 17.1 161 425-621 19-181 (183)
26 2g3y_A GTP-binding protein GEM 99.9 6.4E-21 2.2E-25 187.1 15.3 163 425-621 38-202 (211)
27 1z0f_A RAB14, member RAS oncog 99.8 1.5E-20 5E-25 178.3 17.4 161 424-620 15-176 (179)
28 2cjw_A GTP-binding protein GEM 99.8 1.7E-20 5.8E-25 181.3 18.0 164 425-622 7-172 (192)
29 1g16_A RAS-related protein SEC 99.8 9.3E-21 3.2E-25 178.1 15.4 161 425-622 4-165 (170)
30 2fn4_A P23, RAS-related protei 99.8 1.3E-20 4.4E-25 179.0 16.4 163 425-623 10-173 (181)
31 2gf9_A RAS-related protein RAB 99.8 1.3E-20 4.6E-25 181.1 16.6 162 425-622 23-185 (189)
32 2efe_B Small GTP-binding prote 99.8 9.9E-21 3.4E-25 180.1 15.5 162 425-622 13-175 (181)
33 1r2q_A RAS-related protein RAB 99.8 1.2E-20 4E-25 177.3 15.4 160 425-620 7-167 (170)
34 1zbd_A Rabphilin-3A; G protein 99.8 2.1E-20 7.2E-25 181.8 17.6 163 425-623 9-172 (203)
35 2wji_A Ferrous iron transport 99.8 7.6E-21 2.6E-25 178.9 14.0 158 425-620 4-163 (165)
36 1ek0_A Protein (GTP-binding pr 99.8 8.8E-21 3E-25 178.1 14.4 160 425-620 4-167 (170)
37 2oil_A CATX-8, RAS-related pro 99.8 1.8E-20 6.1E-25 180.8 16.7 162 425-622 26-188 (193)
38 1z06_A RAS-related protein RAB 99.8 1.1E-20 3.7E-25 181.8 15.1 162 425-621 21-187 (189)
39 3t5g_A GTP-binding protein RHE 99.8 1E-20 3.5E-25 180.3 14.7 163 425-623 7-170 (181)
40 2g6b_A RAS-related protein RAB 99.8 1.2E-20 4E-25 179.5 14.8 161 425-621 11-173 (180)
41 2p5s_A RAS and EF-hand domain 99.8 1.3E-20 4.6E-25 182.9 15.4 163 423-621 27-196 (199)
42 2o52_A RAS-related protein RAB 99.8 5.5E-21 1.9E-25 185.9 12.6 163 424-622 25-188 (200)
43 2bov_A RAla, RAS-related prote 99.8 4.6E-20 1.6E-24 179.5 19.2 163 425-623 15-178 (206)
44 3q72_A GTP-binding protein RAD 99.8 1.4E-20 4.9E-25 176.4 15.1 160 425-622 3-164 (166)
45 3cpj_B GTP-binding protein YPT 99.8 1.4E-20 4.6E-25 186.4 15.4 161 425-621 14-175 (223)
46 2fg5_A RAB-22B, RAS-related pr 99.8 1.1E-20 3.8E-25 182.3 14.4 162 425-622 24-186 (192)
47 1vg8_A RAS-related protein RAB 99.8 3.4E-20 1.2E-24 180.7 17.9 165 424-622 8-175 (207)
48 2gj8_A MNME, tRNA modification 99.8 9.2E-21 3.1E-25 179.8 13.4 162 423-622 3-166 (172)
49 1c1y_A RAS-related protein RAP 99.8 2.5E-20 8.5E-25 174.6 16.2 161 425-620 4-165 (167)
50 3bc1_A RAS-related protein RAB 99.8 3.6E-20 1.2E-24 178.0 17.7 163 425-622 12-185 (195)
51 1wms_A RAB-9, RAB9, RAS-relate 99.8 3.6E-20 1.2E-24 175.6 17.3 163 425-621 8-173 (177)
52 2nzj_A GTP-binding protein REM 99.8 2.4E-20 8.1E-25 176.3 15.6 164 425-622 5-169 (175)
53 2qu8_A Putative nucleolar GTP- 99.8 5.7E-20 2E-24 182.6 19.1 175 424-624 29-207 (228)
54 2y8e_A RAB-protein 6, GH09086P 99.8 1.4E-20 4.7E-25 178.5 13.9 160 425-620 15-175 (179)
55 2erx_A GTP-binding protein DI- 99.8 1.5E-20 5.1E-25 176.9 14.0 161 425-620 4-165 (172)
56 3oes_A GTPase rhebl1; small GT 99.8 8.2E-21 2.8E-25 184.6 12.5 166 423-624 23-189 (201)
57 1kao_A RAP2A; GTP-binding prot 99.8 2.7E-20 9.1E-25 174.1 15.3 161 425-621 4-165 (167)
58 1u8z_A RAS-related protein RAL 99.8 3.5E-20 1.2E-24 173.5 16.1 161 425-621 5-166 (168)
59 4dsu_A GTPase KRAS, isoform 2B 99.8 8E-20 2.7E-24 175.0 18.9 164 425-625 5-169 (189)
60 2a9k_A RAS-related protein RAL 99.8 8.2E-20 2.8E-24 174.5 18.3 162 425-622 19-181 (187)
61 3cph_A RAS-related protein SEC 99.8 4.2E-20 1.4E-24 180.9 16.3 163 424-623 20-183 (213)
62 4bas_A ADP-ribosylation factor 99.8 4.9E-20 1.7E-24 178.2 16.5 165 425-622 18-189 (199)
63 1ky3_A GTP-binding protein YPT 99.8 3.5E-20 1.2E-24 176.2 15.2 165 424-621 8-177 (182)
64 3iev_A GTP-binding protein ERA 99.8 3.4E-20 1.2E-24 192.7 15.4 168 425-623 11-183 (308)
65 3c5c_A RAS-like protein 12; GD 99.8 3.6E-20 1.2E-24 178.1 14.3 161 425-621 22-185 (187)
66 1r8s_A ADP-ribosylation factor 99.8 7.2E-20 2.5E-24 171.2 16.0 160 426-621 2-161 (164)
67 2f7s_A C25KG, RAS-related prot 99.8 1.8E-20 6.1E-25 184.4 12.2 163 425-622 26-199 (217)
68 3ihw_A Centg3; RAS, centaurin, 99.8 8E-20 2.8E-24 175.2 16.3 156 425-621 21-179 (184)
69 4djt_A GTP-binding nuclear pro 99.8 3.8E-20 1.3E-24 182.2 14.2 162 425-622 12-175 (218)
70 3clv_A RAB5 protein, putative; 99.8 1.1E-19 3.9E-24 175.9 17.2 159 424-622 7-204 (208)
71 2yc2_C IFT27, small RAB-relate 99.8 2.5E-20 8.4E-25 181.6 12.5 165 424-622 20-192 (208)
72 1x3s_A RAS-related protein RAB 99.8 7.3E-20 2.5E-24 176.3 15.6 162 425-622 16-178 (195)
73 2lkc_A Translation initiation 99.8 3.4E-20 1.2E-24 175.9 12.9 166 423-623 7-172 (178)
74 2q3h_A RAS homolog gene family 99.8 7.1E-20 2.4E-24 177.8 14.9 163 423-622 19-195 (201)
75 1upt_A ARL1, ADP-ribosylation 99.8 9.3E-20 3.2E-24 171.5 15.2 163 423-621 6-168 (171)
76 2j0v_A RAC-like GTP-binding pr 99.8 1.2E-19 4E-24 177.8 16.3 162 424-622 9-180 (212)
77 2atv_A RERG, RAS-like estrogen 99.8 1.8E-19 6.2E-24 174.3 16.8 162 424-621 28-190 (196)
78 1m2o_B GTP-binding protein SAR 99.8 8.1E-20 2.8E-24 176.1 14.3 165 425-619 24-189 (190)
79 3gee_A MNME, tRNA modification 99.8 2.1E-20 7.3E-25 204.5 11.2 192 424-650 233-430 (476)
80 3bwd_D RAC-like GTP-binding pr 99.8 4.6E-20 1.6E-24 175.7 12.2 161 423-620 7-179 (182)
81 1zj6_A ADP-ribosylation factor 99.8 6.5E-20 2.2E-24 176.0 13.3 167 424-626 16-182 (187)
82 3reg_A RHO-like small GTPase; 99.8 6.5E-20 2.2E-24 177.1 13.3 160 425-621 24-187 (194)
83 2atx_A Small GTP binding prote 99.8 1.7E-19 5.7E-24 174.1 16.1 159 425-620 19-191 (194)
84 2fh5_B SR-beta, signal recogni 99.8 2.2E-19 7.6E-24 176.1 16.9 178 424-619 7-213 (214)
85 3q3j_B RHO-related GTP-binding 99.8 4.9E-20 1.7E-24 181.3 12.0 162 424-622 27-203 (214)
86 2wjg_A FEOB, ferrous iron tran 99.8 6.4E-20 2.2E-24 175.9 12.4 161 425-623 8-170 (188)
87 4gzl_A RAS-related C3 botulinu 99.8 8.1E-20 2.8E-24 178.2 13.2 165 424-619 30-202 (204)
88 1xzp_A Probable tRNA modificat 99.8 3.2E-19 1.1E-23 195.3 18.9 186 424-648 243-434 (482)
89 2h57_A ADP-ribosylation factor 99.8 2.3E-19 8E-24 172.5 15.7 165 424-622 21-187 (190)
90 3l0i_B RAS-related protein RAB 99.8 1.8E-21 6E-26 189.1 0.7 162 424-621 33-195 (199)
91 2gf0_A GTP-binding protein DI- 99.8 1.7E-19 5.8E-24 174.4 14.5 161 425-621 9-170 (199)
92 1f6b_A SAR1; gtpases, N-termin 99.8 1.5E-19 5.1E-24 175.5 13.9 169 425-619 26-196 (198)
93 2ce2_X GTPase HRAS; signaling 99.8 4.8E-19 1.7E-23 165.2 16.8 160 425-621 4-164 (166)
94 1zd9_A ADP-ribosylation factor 99.8 1.3E-19 4.4E-24 174.2 13.2 163 424-621 22-184 (188)
95 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.9E-19 6.3E-24 172.0 14.2 165 425-620 6-178 (186)
96 3llu_A RAS-related GTP-binding 99.8 4.8E-19 1.6E-23 171.4 16.8 163 425-619 21-194 (196)
97 3lxx_A GTPase IMAP family memb 99.8 1.3E-19 4.6E-24 181.3 13.2 196 425-644 30-238 (239)
98 4a9a_A Ribosome-interacting GT 99.8 2.2E-20 7.5E-25 197.1 7.8 123 177-311 73-195 (376)
99 2dyk_A GTP-binding protein; GT 99.8 3.6E-19 1.2E-23 165.8 15.2 157 425-619 2-159 (161)
100 2b6h_A ADP-ribosylation factor 99.8 1.5E-19 5.3E-24 174.4 13.0 162 423-620 28-189 (192)
101 1fzq_A ADP-ribosylation factor 99.8 4.3E-19 1.5E-23 169.6 15.8 162 424-621 16-177 (181)
102 2gco_A H9, RHO-related GTP-bin 99.8 2.3E-19 7.7E-24 174.5 13.8 165 425-620 26-198 (201)
103 2h17_A ADP-ribosylation factor 99.8 1.1E-19 3.7E-24 173.5 11.3 159 425-619 22-180 (181)
104 1wf3_A GTP-binding protein; GT 99.8 1.1E-19 3.9E-24 187.8 12.3 192 425-652 8-208 (301)
105 2x77_A ADP-ribosylation factor 99.8 2E-19 6.7E-24 172.8 12.9 163 423-621 21-183 (189)
106 1ksh_A ARF-like protein 2; sma 99.8 4E-19 1.4E-23 170.1 14.6 163 423-621 17-179 (186)
107 1m7b_A RND3/RHOE small GTP-bin 99.8 1.4E-19 4.7E-24 173.3 11.3 159 425-620 8-181 (184)
108 3iby_A Ferrous iron transport 99.8 2.3E-20 7.9E-25 188.6 6.2 158 425-619 2-164 (256)
109 1udx_A The GTP-binding protein 99.8 1.3E-18 4.5E-23 186.6 19.7 184 410-623 143-326 (416)
110 3a1s_A Iron(II) transport prot 99.8 2E-19 6.8E-24 182.0 12.5 159 425-621 6-166 (258)
111 3con_A GTPase NRAS; structural 99.8 6.6E-19 2.3E-23 169.2 15.5 161 425-622 22-183 (190)
112 2fv8_A H6, RHO-related GTP-bin 99.8 2.8E-19 9.6E-24 174.7 13.0 167 424-621 25-199 (207)
113 1gwn_A RHO-related GTP-binding 99.8 2.1E-19 7.2E-24 175.5 12.1 159 425-620 29-202 (205)
114 1moz_A ARL1, ADP-ribosylation 99.8 1.6E-19 5.6E-24 172.1 10.8 163 424-622 18-180 (183)
115 3t1o_A Gliding protein MGLA; G 99.8 6.3E-19 2.1E-23 169.9 14.5 166 425-622 15-192 (198)
116 2j1l_A RHO-related GTP-binding 99.8 4.6E-19 1.6E-23 174.2 13.5 166 425-621 35-208 (214)
117 3b1v_A Ferrous iron uptake tra 99.8 2.3E-19 8E-24 182.7 11.1 158 425-621 4-163 (272)
118 4dhe_A Probable GTP-binding pr 99.8 2E-18 6.7E-23 170.4 17.0 175 424-622 29-211 (223)
119 3r7w_A Gtpase1, GTP-binding pr 99.8 1.7E-18 5.7E-23 179.9 16.8 175 424-619 3-178 (307)
120 1svi_A GTP-binding protein YSX 99.8 5E-18 1.7E-22 163.6 18.1 164 424-621 23-194 (195)
121 3gj0_A GTP-binding nuclear pro 99.8 4.1E-19 1.4E-23 175.3 10.0 159 425-622 16-175 (221)
122 3i8s_A Ferrous iron transport 99.8 3.7E-19 1.3E-23 181.8 9.7 159 425-620 4-167 (274)
123 2zej_A Dardarin, leucine-rich 99.8 7.8E-19 2.7E-23 168.2 11.4 168 425-621 3-177 (184)
124 2xtp_A GTPase IMAP family memb 99.8 8.5E-19 2.9E-23 177.7 12.1 179 425-623 23-209 (260)
125 2f9l_A RAB11B, member RAS onco 99.8 6.1E-18 2.1E-22 164.1 17.2 163 425-623 6-169 (199)
126 3k53_A Ferrous iron transport 99.8 6.1E-19 2.1E-23 180.0 10.6 160 425-622 4-166 (271)
127 1mky_A Probable GTP-binding pr 99.8 4.4E-18 1.5E-22 185.6 18.1 161 425-621 2-165 (439)
128 3lxw_A GTPase IMAP family memb 99.8 2.9E-18 9.8E-23 172.5 14.9 175 425-622 22-208 (247)
129 3geh_A MNME, tRNA modification 99.8 7.5E-19 2.6E-23 191.5 9.9 187 423-649 223-415 (462)
130 3pqc_A Probable GTP-binding pr 99.8 1.8E-17 6.3E-22 159.3 18.4 164 424-621 23-193 (195)
131 1oix_A RAS-related protein RAB 99.8 9.7E-18 3.3E-22 161.7 16.3 160 425-620 30-190 (191)
132 3lvq_E ARF-GAP with SH3 domain 99.8 2.9E-18 9.8E-23 190.4 12.9 167 423-625 321-487 (497)
133 2cxx_A Probable GTP-binding pr 99.7 1E-17 3.4E-22 160.5 14.1 169 425-622 2-184 (190)
134 3o47_A ADP-ribosylation factor 99.7 6.5E-18 2.2E-22 177.1 13.6 163 423-621 164-326 (329)
135 2qtf_A Protein HFLX, GTP-bindi 99.7 2.2E-17 7.6E-22 174.8 17.8 176 426-627 181-359 (364)
136 3th5_A RAS-related C3 botulinu 99.6 1.1E-19 3.9E-24 176.9 0.0 166 423-619 29-202 (204)
137 3r7w_B Gtpase2, GTP-binding pr 99.7 4.8E-18 1.6E-22 175.0 11.7 164 426-620 1-172 (331)
138 2e87_A Hypothetical protein PH 99.7 1.1E-16 3.8E-21 169.8 22.0 169 424-623 167-337 (357)
139 2wkq_A NPH1-1, RAS-related C3 99.7 8.8E-18 3E-22 176.1 13.1 165 425-620 156-328 (332)
140 3qq5_A Small GTP-binding prote 99.7 3.1E-18 1.1E-22 184.2 9.3 160 425-621 35-195 (423)
141 1xzp_A Probable tRNA modificat 99.7 9.4E-21 3.2E-25 207.4 -10.6 266 41-373 86-404 (482)
142 3c5h_A Glucocorticoid receptor 99.7 5.9E-18 2E-22 171.0 10.1 168 425-621 20-254 (255)
143 1ega_A Protein (GTP-binding pr 99.7 4E-18 1.4E-22 176.5 7.2 194 423-652 7-209 (301)
144 3izy_P Translation initiation 99.7 5.5E-18 1.9E-22 186.9 1.9 164 422-621 2-167 (537)
145 2hjg_A GTP-binding protein ENG 99.7 3.5E-17 1.2E-21 178.3 8.3 159 425-621 4-164 (436)
146 3dpu_A RAB family protein; roc 99.7 4.8E-17 1.6E-21 182.0 9.5 159 425-623 42-209 (535)
147 1wb1_A Translation elongation 99.7 4.3E-16 1.5E-20 171.3 16.4 162 425-621 20-188 (482)
148 2aka_B Dynamin-1; fusion prote 99.7 1.8E-16 6.2E-21 163.7 11.6 167 425-621 27-252 (299)
149 3j2k_7 ERF3, eukaryotic polype 99.7 5.2E-16 1.8E-20 168.8 15.6 164 424-614 17-217 (439)
150 4a9a_A Ribosome-interacting GT 99.7 1.3E-15 4.4E-20 160.8 17.1 123 425-559 73-195 (376)
151 1wxq_A GTP-binding protein; st 99.6 1.9E-17 6.4E-22 177.3 2.2 89 426-514 2-113 (397)
152 3sjy_A Translation initiation 99.6 1.4E-15 4.8E-20 163.9 16.2 164 424-620 8-190 (403)
153 3p26_A Elongation factor 1 alp 99.6 1.2E-15 4.2E-20 168.2 15.7 164 425-613 34-229 (483)
154 3t5d_A Septin-7; GTP-binding p 99.6 2.1E-15 7.2E-20 154.0 14.2 165 425-620 9-202 (274)
155 1zo1_I IF2, translation initia 99.6 1.9E-16 6.6E-21 173.2 6.4 161 423-618 3-163 (501)
156 3cb4_D GTP-binding protein LEP 99.6 3.9E-15 1.4E-19 166.6 17.0 158 424-620 4-180 (599)
157 2ywe_A GTP-binding protein LEP 99.6 3.4E-15 1.2E-19 166.8 16.1 159 423-620 5-182 (600)
158 4dcu_A GTP-binding protein ENG 99.6 2.3E-16 7.9E-21 172.9 6.3 159 425-621 24-184 (456)
159 1kk1_A EIF2gamma; initiation o 99.6 5.3E-15 1.8E-19 159.8 16.2 163 425-620 11-198 (410)
160 1g7s_A Translation initiation 99.6 3.2E-15 1.1E-19 167.5 14.9 176 424-622 5-218 (594)
161 3tr5_A RF-3, peptide chain rel 99.6 1.9E-15 6.4E-20 167.4 12.8 116 423-561 12-149 (528)
162 2c78_A Elongation factor TU-A; 99.6 5.5E-15 1.9E-19 159.4 15.4 151 425-608 12-180 (405)
163 3ec1_A YQEH GTPase; atnos1, at 99.6 2.8E-16 9.4E-21 167.0 4.7 218 246-561 62-289 (369)
164 1nrj_B SR-beta, signal recogni 99.6 2E-15 7E-20 148.2 10.6 116 424-562 12-136 (218)
165 1jal_A YCHF protein; nucleotid 99.6 8.2E-15 2.8E-19 153.7 15.7 90 425-514 3-108 (363)
166 1s0u_A EIF-2-gamma, translatio 99.6 4.8E-15 1.6E-19 160.0 14.2 164 424-620 8-196 (408)
167 2dby_A GTP-binding protein; GD 99.6 3E-15 1E-19 158.1 12.1 89 178-266 3-111 (368)
168 2dby_A GTP-binding protein; GD 99.6 8.4E-15 2.9E-19 154.7 15.3 90 425-514 2-111 (368)
169 1d2e_A Elongation factor TU (E 99.6 7.7E-15 2.6E-19 157.8 15.1 163 425-620 4-193 (397)
170 2elf_A Protein translation elo 99.6 1.3E-14 4.3E-19 154.1 16.5 152 426-623 23-181 (370)
171 3iev_A GTP-binding protein ERA 99.6 3.1E-15 1E-19 155.3 11.3 166 178-374 12-182 (308)
172 1jal_A YCHF protein; nucleotid 99.6 1.7E-15 5.7E-20 159.0 8.9 112 177-289 3-132 (363)
173 1jwy_B Dynamin A GTPase domain 99.6 3.3E-15 1.1E-19 155.5 10.7 169 425-622 25-262 (315)
174 1wxq_A GTP-binding protein; st 99.6 3.5E-16 1.2E-20 167.5 2.8 115 178-292 2-141 (397)
175 3izq_1 HBS1P, elongation facto 99.6 7.1E-15 2.4E-19 165.7 13.0 163 423-613 166-363 (611)
176 1pui_A ENGB, probable GTP-bind 99.6 2.9E-14 9.8E-19 139.0 15.3 172 419-623 21-200 (210)
177 3h2y_A GTPase family protein; 99.6 5.2E-16 1.8E-20 164.7 2.8 219 246-564 60-291 (368)
178 2j69_A Bacterial dynamin-like 99.6 5.3E-14 1.8E-18 161.2 19.0 173 424-621 69-324 (695)
179 1zun_B Sulfate adenylate trans 99.6 4.8E-14 1.6E-18 153.4 17.5 158 425-615 25-217 (434)
180 3def_A T7I23.11 protein; chlor 99.6 2.8E-14 9.4E-19 144.6 14.5 125 425-559 37-164 (262)
181 2wji_A Ferrous iron transport 99.6 8E-15 2.7E-19 137.5 9.7 154 178-372 5-163 (165)
182 3lxw_A GTPase IMAP family memb 99.5 9E-15 3.1E-19 146.9 10.1 168 178-375 23-209 (247)
183 1jny_A EF-1-alpha, elongation 99.5 2.4E-14 8.1E-19 155.8 13.8 163 424-614 6-205 (435)
184 3iby_A Ferrous iron transport 99.5 1.7E-15 5.9E-20 152.8 4.4 154 177-371 2-164 (256)
185 2x2e_A Dynamin-1; nitration, h 99.5 2.1E-14 7.1E-19 152.0 11.7 164 425-618 32-254 (353)
186 1f60_A Elongation factor EEF1A 99.5 2.4E-14 8.1E-19 156.6 12.5 159 425-613 8-203 (458)
187 4dhe_A Probable GTP-binding pr 99.5 3.4E-15 1.2E-19 147.0 4.9 172 177-375 30-212 (223)
188 3mca_A HBS1, elongation factor 99.5 5.3E-15 1.8E-19 166.3 5.4 168 423-618 176-393 (592)
189 1r5b_A Eukaryotic peptide chai 99.5 1.2E-14 4E-19 159.4 7.9 165 424-614 43-244 (467)
190 2gj8_A MNME, tRNA modification 99.5 4.1E-15 1.4E-19 140.6 3.5 160 176-373 4-165 (172)
191 2ged_A SR-beta, signal recogni 99.5 8.7E-14 3E-18 133.5 12.7 120 425-563 49-173 (193)
192 2dyk_A GTP-binding protein; GT 99.5 5.4E-15 1.9E-19 137.2 3.8 158 177-372 2-160 (161)
193 3lxx_A GTPase IMAP family memb 99.5 1.9E-14 6.3E-19 143.8 7.8 126 178-315 31-162 (239)
194 3avx_A Elongation factor TS, e 99.5 1E-13 3.5E-18 161.7 15.0 163 425-619 297-483 (1289)
195 3b1v_A Ferrous iron uptake tra 99.5 1.5E-14 5E-19 147.1 7.1 153 178-372 5-162 (272)
196 2dy1_A Elongation factor G; tr 99.5 3.5E-13 1.2E-17 153.8 19.3 118 419-559 4-139 (665)
197 2qtf_A Protein HFLX, GTP-bindi 99.5 4.3E-14 1.5E-18 149.6 10.6 169 178-374 181-354 (364)
198 1wf3_A GTP-binding protein; GT 99.5 8.3E-15 2.8E-19 151.3 4.9 159 178-372 9-171 (301)
199 3i8s_A Ferrous iron transport 99.5 1E-14 3.6E-19 148.7 5.6 155 178-372 5-167 (274)
200 1h65_A Chloroplast outer envel 99.5 2.6E-13 8.8E-18 138.1 15.8 128 425-562 40-170 (270)
201 2qu8_A Putative nucleolar GTP- 99.5 3.3E-14 1.1E-18 140.8 8.9 175 178-376 31-207 (228)
202 1ega_A Protein (GTP-binding pr 99.5 2.3E-15 7.9E-20 155.7 0.5 158 178-373 10-174 (301)
203 3tw8_B RAS-related protein RAB 99.5 3.8E-14 1.3E-18 134.1 8.5 161 177-375 10-172 (181)
204 2www_A Methylmalonic aciduria 99.5 1.8E-13 6.1E-18 144.3 13.9 139 472-648 167-305 (349)
205 2qag_A Septin-2, protein NEDD5 99.5 3.2E-14 1.1E-18 150.7 8.2 163 426-621 39-232 (361)
206 3a1s_A Iron(II) transport prot 99.5 1.2E-14 4.2E-19 146.8 4.5 155 178-373 7-166 (258)
207 2wjg_A FEOB, ferrous iron tran 99.5 1.5E-14 5.3E-19 138.1 4.5 156 178-374 9-169 (188)
208 4dsu_A GTPase KRAS, isoform 2B 99.5 2.2E-13 7.4E-18 129.9 12.4 162 178-376 6-168 (189)
209 3p32_A Probable GTPase RV1496/ 99.5 9.5E-13 3.3E-17 139.3 18.5 114 472-623 172-285 (355)
210 1dar_A EF-G, elongation factor 99.5 4.9E-13 1.7E-17 153.1 16.6 116 423-561 11-144 (691)
211 3t34_A Dynamin-related protein 99.5 1.1E-13 3.8E-18 146.8 10.5 165 425-620 35-259 (360)
212 1u8z_A RAS-related protein RAL 99.4 4.3E-13 1.5E-17 124.8 12.5 156 178-372 6-165 (168)
213 3tkl_A RAS-related protein RAB 99.4 9.2E-14 3.1E-18 133.5 8.1 161 177-374 17-179 (196)
214 3q85_A GTP-binding protein REM 99.4 1.4E-13 4.9E-18 128.7 9.1 159 178-373 4-166 (169)
215 2bov_A RAla, RAS-related prote 99.4 6.4E-13 2.2E-17 128.6 13.7 160 177-375 15-178 (206)
216 2fn4_A P23, RAS-related protei 99.4 3.6E-13 1.2E-17 127.3 11.6 158 178-374 11-172 (181)
217 2a9k_A RAS-related protein RAL 99.4 6.1E-13 2.1E-17 126.4 13.2 160 178-374 20-181 (187)
218 2xex_A Elongation factor G; GT 99.4 1E-12 3.4E-17 150.6 17.3 116 423-561 9-142 (693)
219 1g16_A RAS-related protein SEC 99.4 1.3E-13 4.5E-18 128.9 8.2 159 178-374 5-165 (170)
220 2e87_A Hypothetical protein PH 99.4 4.3E-13 1.5E-17 142.1 13.0 168 177-375 168-337 (357)
221 1z2a_A RAS-related protein RAB 99.4 2.4E-13 8.3E-18 126.8 9.9 157 178-372 7-165 (168)
222 2h5e_A Peptide chain release f 99.4 8.6E-13 3E-17 146.2 15.6 116 423-561 12-149 (529)
223 3zvr_A Dynamin-1; hydrolase, D 99.4 7.7E-13 2.6E-17 150.5 14.8 166 425-619 52-275 (772)
224 3clv_A RAB5 protein, putative; 99.4 5.7E-13 1.9E-17 128.4 11.8 158 177-373 8-203 (208)
225 2hxs_A RAB-26, RAS-related pro 99.4 1.5E-13 5.3E-18 129.7 7.4 161 178-373 8-172 (178)
226 2il1_A RAB12; G-protein, GDP, 99.4 2.7E-13 9.1E-18 130.4 9.2 160 178-373 28-189 (192)
227 3gee_A MNME, tRNA modification 99.4 4E-14 1.4E-18 154.8 3.4 163 176-373 233-397 (476)
228 1vg8_A RAS-related protein RAB 99.4 3.4E-13 1.2E-17 130.8 9.5 165 177-375 9-176 (207)
229 2rdo_7 EF-G, elongation factor 99.4 1.3E-12 4.5E-17 149.8 15.9 117 423-561 9-149 (704)
230 1wms_A RAB-9, RAB9, RAS-relate 99.4 3.5E-13 1.2E-17 127.1 9.1 163 177-373 8-173 (177)
231 1puj_A YLQF, conserved hypothe 99.4 9.9E-14 3.4E-18 141.7 5.6 177 228-487 3-180 (282)
232 2qm8_A GTPase/ATPase; G protei 99.4 1.4E-12 4.8E-17 136.7 14.5 194 416-647 47-286 (337)
233 1kao_A RAP2A; GTP-binding prot 99.4 7.5E-13 2.6E-17 123.1 11.1 159 178-373 5-165 (167)
234 2erx_A GTP-binding protein DI- 99.4 2.8E-13 9.5E-18 126.8 8.1 159 178-372 5-165 (172)
235 3cph_A RAS-related protein SEC 99.4 4.8E-13 1.7E-17 130.3 10.0 162 176-374 20-182 (213)
236 3pqc_A Probable GTP-binding pr 99.4 3.7E-13 1.3E-17 129.0 8.9 160 177-373 24-193 (195)
237 2p67_A LAO/AO transport system 99.4 1.2E-12 4.2E-17 137.6 13.7 164 419-622 51-261 (341)
238 3k53_A Ferrous iron transport 99.4 1.1E-13 3.9E-18 140.8 5.5 157 177-373 4-165 (271)
239 1svi_A GTP-binding protein YSX 99.4 1.6E-13 5.4E-18 131.9 6.2 162 177-372 24-193 (195)
240 1x3s_A RAS-related protein RAB 99.4 5.7E-13 2E-17 127.7 9.9 159 177-373 16-177 (195)
241 2ce2_X GTPase HRAS; signaling 99.4 1.6E-12 5.3E-17 120.6 12.4 158 178-372 5-163 (166)
242 2y8e_A RAB-protein 6, GH09086P 99.4 4E-13 1.4E-17 126.7 8.4 158 178-372 16-175 (179)
243 2xtp_A GTPase IMAP family memb 99.4 4.2E-13 1.5E-17 135.6 9.1 170 178-374 24-208 (260)
244 1m2o_B GTP-binding protein SAR 99.4 2.7E-13 9.1E-18 130.2 7.2 173 168-370 16-188 (190)
245 1c1y_A RAS-related protein RAP 99.4 7.8E-13 2.7E-17 123.2 10.1 159 178-372 5-165 (167)
246 2h57_A ADP-ribosylation factor 99.4 4.8E-13 1.7E-17 128.1 8.9 162 177-374 22-187 (190)
247 3bc1_A RAS-related protein RAB 99.4 7.1E-13 2.4E-17 126.7 9.9 159 178-374 13-185 (195)
248 2ohf_A Protein OLA1, GTP-bindi 99.4 1.2E-13 4.1E-18 146.2 4.8 120 174-294 20-157 (396)
249 3vqt_A RF-3, peptide chain rel 99.4 3.7E-12 1.3E-16 141.8 17.0 127 422-571 29-179 (548)
250 4bas_A ADP-ribosylation factor 99.4 5.4E-13 1.8E-17 128.5 8.7 166 177-375 18-190 (199)
251 2lkc_A Translation initiation 99.4 4.3E-13 1.5E-17 126.6 7.7 164 176-374 8-171 (178)
252 1ek0_A Protein (GTP-binding pr 99.4 5.9E-13 2E-17 124.3 8.6 157 178-372 5-167 (170)
253 2q3h_A RAS homolog gene family 99.4 7.9E-13 2.7E-17 127.8 9.7 174 175-374 19-195 (201)
254 2bcg_Y Protein YP2, GTP-bindin 99.4 5.7E-13 2E-17 129.4 8.6 162 177-375 9-172 (206)
255 1z08_A RAS-related protein RAB 99.4 1.1E-12 3.7E-17 122.7 10.1 158 178-372 8-167 (170)
256 1z0f_A RAB14, member RAS oncog 99.4 1.9E-12 6.6E-17 122.0 11.8 158 177-372 16-176 (179)
257 2gf0_A GTP-binding protein DI- 99.4 7.1E-13 2.4E-17 127.6 8.9 159 178-373 10-170 (199)
258 2efe_B Small GTP-binding prote 99.4 8.5E-13 2.9E-17 124.9 9.1 160 177-374 13-175 (181)
259 2bme_A RAB4A, RAS-related prot 99.4 5.5E-13 1.9E-17 126.9 7.8 161 177-374 11-173 (186)
260 2ew1_A RAS-related protein RAB 99.4 4.2E-13 1.4E-17 130.2 7.0 161 177-374 27-189 (201)
261 2a5j_A RAS-related protein RAB 99.4 6.6E-13 2.2E-17 127.4 8.2 160 178-374 23-184 (191)
262 3kkq_A RAS-related protein M-R 99.4 1.6E-12 5.6E-17 123.3 10.9 159 178-373 20-181 (183)
263 3cbq_A GTP-binding protein REM 99.4 1.1E-12 3.8E-17 126.5 9.9 160 177-373 24-187 (195)
264 1r8s_A ADP-ribosylation factor 99.4 1.4E-12 4.9E-17 121.2 10.2 158 178-373 2-161 (164)
265 2g6b_A RAS-related protein RAB 99.4 1.3E-12 4.4E-17 123.6 9.9 160 178-374 12-174 (180)
266 1zd9_A ADP-ribosylation factor 99.4 8.7E-13 3E-17 126.2 8.6 160 177-373 23-184 (188)
267 1ky3_A GTP-binding protein YPT 99.4 1.2E-12 4E-17 123.8 9.2 163 177-373 9-177 (182)
268 3q72_A GTP-binding protein RAD 99.4 3.2E-13 1.1E-17 125.9 5.1 160 177-374 3-164 (166)
269 1r2q_A RAS-related protein RAB 99.4 1.4E-12 4.9E-17 121.6 9.5 157 178-372 8-167 (170)
270 3con_A GTPase NRAS; structural 99.4 1.3E-12 4.6E-17 124.9 9.4 160 178-374 23-183 (190)
271 2hup_A RAS-related protein RAB 99.4 1.6E-12 5.4E-17 126.0 10.0 162 177-374 30-193 (201)
272 2gf9_A RAS-related protein RAB 99.4 2.3E-12 8E-17 123.2 11.0 160 177-373 23-184 (189)
273 2iwr_A Centaurin gamma 1; ANK 99.4 2.8E-12 9.5E-17 121.2 11.3 157 178-375 9-170 (178)
274 1f6b_A SAR1; gtpases, N-termin 99.4 4.3E-13 1.5E-17 129.7 5.7 168 178-371 27-196 (198)
275 2atv_A RERG, RAS-like estrogen 99.4 2.3E-12 7.9E-17 124.1 10.8 160 177-374 29-191 (196)
276 1ksh_A ARF-like protein 2; sma 99.4 8E-13 2.8E-17 125.9 7.5 163 176-374 18-180 (186)
277 1zj6_A ADP-ribosylation factor 99.4 1.1E-12 3.9E-17 125.2 8.6 160 177-374 17-178 (187)
278 1zbd_A Rabphilin-3A; G protein 99.4 1.9E-12 6.5E-17 125.3 10.1 161 177-374 9-171 (203)
279 2oil_A CATX-8, RAS-related pro 99.4 1.9E-12 6.4E-17 124.3 10.0 160 177-374 26-188 (193)
280 1z0j_A RAB-22, RAS-related pro 99.4 1.8E-12 6.2E-17 121.1 9.7 159 177-372 7-167 (170)
281 2iw3_A Elongation factor 3A; a 99.4 1.4E-12 4.7E-17 151.9 10.8 261 166-470 451-734 (986)
282 3t5g_A GTP-binding protein RHE 99.3 1E-12 3.4E-17 124.6 7.7 161 177-374 7-169 (181)
283 2f7s_A C25KG, RAS-related prot 99.3 5.1E-13 1.8E-17 130.8 5.7 160 177-374 26-199 (217)
284 2nzj_A GTP-binding protein REM 99.3 1.5E-12 5E-17 122.5 8.6 163 177-374 5-169 (175)
285 3dz8_A RAS-related protein RAB 99.3 5.9E-13 2E-17 127.7 5.9 162 176-374 23-186 (191)
286 1fzq_A ADP-ribosylation factor 99.3 9.9E-13 3.4E-17 125.1 7.4 159 177-373 17-177 (181)
287 2fg5_A RAB-22B, RAS-related pr 99.3 1.2E-12 4.3E-17 125.6 8.1 157 178-373 25-185 (192)
288 2p5s_A RAS and EF-hand domain 99.3 3.3E-12 1.1E-16 123.4 11.1 160 176-372 28-195 (199)
289 1upt_A ARL1, ADP-ribosylation 99.3 2E-12 6.7E-17 121.1 9.0 159 177-373 8-168 (171)
290 3t1o_A Gliding protein MGLA; G 99.3 3.1E-12 1.1E-16 122.6 10.3 165 178-374 16-192 (198)
291 1yqt_A RNAse L inhibitor; ATP- 99.3 1.7E-13 6E-18 152.4 1.4 53 273-325 150-206 (538)
292 1moz_A ARL1, ADP-ribosylation 99.3 5.4E-13 1.9E-17 126.6 4.6 159 178-374 20-180 (183)
293 2o52_A RAS-related protein RAB 99.3 1E-12 3.5E-17 127.1 6.6 161 177-374 26-188 (200)
294 3oes_A GTPase rhebl1; small GT 99.3 5.8E-13 2E-17 128.9 4.5 163 176-375 24-188 (201)
295 3geh_A MNME, tRNA modification 99.3 1.7E-13 5.9E-18 149.2 0.7 160 175-374 223-384 (462)
296 2h17_A ADP-ribosylation factor 99.3 7.1E-13 2.4E-17 126.0 4.9 156 177-370 22-179 (181)
297 2cxx_A Probable GTP-binding pr 99.3 1.2E-11 4.3E-16 117.8 13.4 169 177-375 2-185 (190)
298 3qq5_A Small GTP-binding prote 99.3 4.8E-13 1.7E-17 143.8 3.2 160 177-373 35-195 (423)
299 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.3E-12 4.4E-17 138.7 6.4 118 175-293 19-155 (392)
300 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 4E-11 1.4E-15 127.2 17.8 94 421-514 17-127 (392)
301 3r7w_A Gtpase1, GTP-binding pr 99.3 6.8E-12 2.3E-16 130.0 11.6 165 177-370 4-177 (307)
302 3reg_A RHO-like small GTPase; 99.3 3.1E-12 1.1E-16 122.9 8.3 160 177-373 24-187 (194)
303 3bk7_A ABC transporter ATP-bin 99.3 4.4E-13 1.5E-17 150.7 2.4 53 273-325 220-276 (607)
304 4djt_A GTP-binding nuclear pro 99.3 2E-12 6.8E-17 126.7 6.8 160 178-374 13-175 (218)
305 2fu5_C RAS-related protein RAB 99.3 2.6E-12 8.8E-17 122.0 7.3 160 177-374 9-171 (183)
306 3cpj_B GTP-binding protein YPT 99.3 1.6E-12 5.6E-17 128.0 6.1 161 177-374 14-176 (223)
307 2j0v_A RAC-like GTP-binding pr 99.3 3.1E-12 1E-16 124.8 8.0 159 178-374 11-180 (212)
308 1n0u_A EF-2, elongation factor 99.3 8.5E-12 2.9E-16 145.8 12.9 156 425-606 20-218 (842)
309 2j1l_A RHO-related GTP-binding 99.3 5.5E-12 1.9E-16 123.4 9.6 170 178-374 36-209 (214)
310 3ozx_A RNAse L inhibitor; ATP 99.3 2.2E-12 7.5E-17 143.2 7.5 50 274-323 131-184 (538)
311 2b6h_A ADP-ribosylation factor 99.3 4E-12 1.4E-16 122.2 8.4 157 178-372 31-189 (192)
312 2zej_A Dardarin, leucine-rich 99.3 5.6E-12 1.9E-16 120.2 9.1 167 178-374 4-178 (184)
313 2atx_A Small GTP binding prote 99.3 6.7E-12 2.3E-16 120.4 9.7 169 178-372 20-191 (194)
314 2ohf_A Protein OLA1, GTP-bindi 99.3 3.5E-12 1.2E-16 135.0 8.4 94 421-514 19-128 (396)
315 4gzl_A RAS-related C3 botulinu 99.3 2.1E-12 7.3E-17 125.4 6.2 171 177-371 31-202 (204)
316 3t5d_A Septin-7; GTP-binding p 99.3 1.7E-12 5.8E-17 132.3 5.5 163 178-371 10-201 (274)
317 2fv8_A H6, RHO-related GTP-bin 99.3 3.2E-12 1.1E-16 124.4 7.2 170 178-372 27-198 (207)
318 3lvq_E ARF-GAP with SH3 domain 99.3 3.1E-12 1.1E-16 141.7 8.1 161 177-375 323-485 (497)
319 1z06_A RAS-related protein RAB 99.3 4.6E-12 1.6E-16 121.1 7.8 162 177-372 21-186 (189)
320 3j16_B RLI1P; ribosome recycli 99.3 3.6E-12 1.2E-16 143.1 8.2 49 274-322 214-266 (608)
321 3c5c_A RAS-like protein 12; GD 99.3 8.9E-12 3E-16 119.1 9.3 158 178-372 23-184 (187)
322 1mh1_A RAC1; GTP-binding, GTPa 99.3 7.5E-12 2.6E-16 118.8 8.5 171 178-373 7-179 (186)
323 2qnr_A Septin-2, protein NEDD5 99.3 7.2E-12 2.5E-16 129.3 8.7 164 426-621 20-213 (301)
324 2gco_A H9, RHO-related GTP-bin 99.3 7.8E-12 2.7E-16 120.9 8.5 170 178-372 27-198 (201)
325 3ihw_A Centg3; RAS, centaurin, 99.3 2.1E-11 7.3E-16 116.2 11.3 155 178-374 22-180 (184)
326 2yc2_C IFT27, small RAB-relate 99.3 1.6E-12 5.5E-17 125.9 3.3 161 177-375 21-193 (208)
327 3bwd_D RAC-like GTP-binding pr 99.3 2.7E-12 9.4E-17 121.5 4.8 159 176-372 8-179 (182)
328 2x77_A ADP-ribosylation factor 99.2 8.8E-12 3E-16 119.1 8.1 159 178-374 24-184 (189)
329 2wsm_A Hydrogenase expression/ 99.2 2.3E-11 7.7E-16 119.4 10.6 152 425-622 31-214 (221)
330 2qpt_A EH domain-containing pr 99.2 4.6E-11 1.6E-15 133.1 14.3 129 424-566 65-238 (550)
331 3o47_A ADP-ribosylation factor 99.2 6.8E-12 2.3E-16 131.2 6.7 158 178-373 167-326 (329)
332 2f9l_A RAB11B, member RAS onco 99.2 1.6E-11 5.4E-16 118.6 8.1 161 177-374 6-168 (199)
333 3dpu_A RAB family protein; roc 99.2 2.8E-12 9.6E-17 143.3 2.8 157 177-374 42-208 (535)
334 2cjw_A GTP-binding protein GEM 99.2 3.8E-11 1.3E-15 115.3 10.3 162 177-373 7-171 (192)
335 3ux8_A Excinuclease ABC, A sub 99.2 8.1E-12 2.8E-16 143.2 6.5 49 276-324 197-251 (670)
336 3j25_A Tetracycline resistance 99.2 1.8E-11 6.1E-16 139.0 9.2 115 424-561 2-134 (638)
337 4dkx_A RAS-related protein RAB 99.2 2.2E-11 7.5E-16 119.4 8.6 159 178-374 15-176 (216)
338 3q3j_B RHO-related GTP-binding 99.2 1.2E-11 4.1E-16 121.1 6.7 160 177-374 28-203 (214)
339 2g3y_A GTP-binding protein GEM 99.2 1.2E-11 4.2E-16 120.7 6.5 160 177-373 38-202 (211)
340 3l0i_B RAS-related protein RAB 99.2 2.5E-13 8.5E-18 131.3 -5.8 158 177-372 34-194 (199)
341 1u0l_A Probable GTPase ENGC; p 99.2 1.9E-11 6.6E-16 126.2 8.1 135 439-617 32-168 (301)
342 2qag_C Septin-7; cell cycle, c 99.2 2.9E-11 9.8E-16 129.7 9.5 171 414-619 27-224 (418)
343 1yrb_A ATP(GTP)binding protein 99.2 1.6E-11 5.4E-16 123.9 7.1 137 473-623 110-258 (262)
344 3llu_A RAS-related GTP-binding 99.2 4.3E-11 1.5E-15 115.2 9.7 170 176-371 20-194 (196)
345 1gwn_A RHO-related GTP-binding 99.2 1.8E-11 6.3E-16 119.0 7.0 170 177-372 29-202 (205)
346 1m7b_A RND3/RHOE small GTP-bin 99.2 2E-11 6.7E-16 116.2 7.0 168 178-372 9-181 (184)
347 2fh5_B SR-beta, signal recogni 99.2 4.1E-11 1.4E-15 116.9 9.2 120 177-313 8-130 (214)
348 2pcj_A ABC transporter, lipopr 99.2 1.4E-10 4.9E-15 114.2 13.1 140 166-323 20-186 (224)
349 1oix_A RAS-related protein RAB 99.2 4.2E-11 1.4E-15 114.9 9.0 158 177-371 30-189 (191)
350 3gj0_A GTP-binding nuclear pro 99.2 4.1E-12 1.4E-16 124.8 1.7 157 178-374 17-175 (221)
351 1pui_A ENGB, probable GTP-bind 99.2 8.2E-12 2.8E-16 121.4 3.8 162 176-374 26-199 (210)
352 3th5_A RAS-related C3 botulinu 98.8 3.6E-12 1.2E-16 123.6 0.0 169 176-371 30-202 (204)
353 3cnl_A YLQF, putative uncharac 99.1 2E-11 6.8E-16 123.2 5.1 147 244-486 11-158 (262)
354 4fn5_A EF-G 1, elongation fact 99.1 7.5E-10 2.6E-14 127.4 18.5 118 422-561 11-152 (709)
355 3ohm_A Guanine nucleotide-bind 99.1 6.4E-11 2.2E-15 122.6 8.3 140 460-621 156-317 (327)
356 1jwy_B Dynamin A GTPase domain 99.1 2.1E-11 7.1E-16 126.7 4.7 170 176-374 24-262 (315)
357 1sgw_A Putative ABC transporte 99.1 2.8E-10 9.7E-15 111.0 12.4 140 166-324 25-180 (214)
358 1cip_A Protein (guanine nucleo 99.1 6.3E-11 2.1E-15 124.5 8.2 142 459-621 181-343 (353)
359 3gfo_A Cobalt import ATP-bindi 99.1 2.8E-10 9.6E-15 115.4 12.5 141 165-324 23-190 (275)
360 3tif_A Uncharacterized ABC tra 99.1 1.3E-10 4.4E-15 115.4 9.4 142 166-324 21-192 (235)
361 2olj_A Amino acid ABC transpor 99.1 2.4E-10 8.2E-15 115.2 11.4 140 166-323 40-205 (263)
362 3sjy_A Translation initiation 99.1 8.1E-11 2.8E-15 126.6 8.0 163 177-373 9-191 (403)
363 1vpl_A ABC transporter, ATP-bi 99.1 5.3E-10 1.8E-14 112.2 13.3 141 166-324 31-193 (256)
364 2hf9_A Probable hydrogenase ni 99.1 3.3E-10 1.1E-14 111.4 11.7 59 546-621 164-223 (226)
365 3p26_A Elongation factor 1 alp 99.1 8E-11 2.7E-15 129.6 7.9 163 177-364 34-228 (483)
366 1wb1_A Translation elongation 99.1 4.7E-11 1.6E-15 131.2 5.7 159 177-373 20-188 (482)
367 1azs_C GS-alpha; complex (lyas 99.1 1.8E-10 6.2E-15 122.4 10.0 145 462-622 208-385 (402)
368 3j2k_7 ERF3, eukaryotic polype 99.1 9.3E-11 3.2E-15 127.4 7.4 166 176-366 17-217 (439)
369 2aka_B Dynamin-1; fusion prote 99.1 3.4E-11 1.2E-15 124.0 3.4 165 177-370 27-249 (299)
370 2nq2_C Hypothetical ABC transp 99.1 4.3E-10 1.5E-14 112.8 11.2 139 166-324 21-175 (253)
371 2xtz_A Guanine nucleotide-bind 99.1 1.8E-10 6.3E-15 120.9 8.6 138 472-621 183-344 (354)
372 4fid_A G protein alpha subunit 99.1 3.5E-10 1.2E-14 117.5 10.4 154 459-622 149-328 (340)
373 2wkq_A NPH1-1, RAS-related C3 99.1 1.7E-10 5.8E-15 120.3 8.2 169 177-372 156-328 (332)
374 3izy_P Translation initiation 99.1 1.2E-11 4E-16 136.5 -0.8 162 176-373 4-167 (537)
375 3tui_C Methionine import ATP-b 99.1 6E-10 2E-14 116.7 12.1 141 166-324 44-210 (366)
376 1z47_A CYSA, putative ABC-tran 99.1 4.7E-10 1.6E-14 117.4 11.3 141 166-324 31-192 (355)
377 3def_A T7I23.11 protein; chlor 99.1 1.2E-10 4.1E-15 117.8 6.3 120 178-311 38-164 (262)
378 1zcb_A G alpha I/13; GTP-bindi 99.1 2.5E-10 8.4E-15 120.4 8.9 144 460-621 190-352 (362)
379 3izq_1 HBS1P, elongation facto 99.0 6.4E-11 2.2E-15 133.5 4.5 166 174-364 165-362 (611)
380 1b0u_A Histidine permease; ABC 99.0 4.3E-10 1.5E-14 113.4 10.0 139 166-323 22-199 (262)
381 2onk_A Molybdate/tungstate ABC 99.0 3.6E-10 1.2E-14 112.4 9.2 139 166-323 15-172 (240)
382 2ihy_A ABC transporter, ATP-bi 99.0 7.2E-10 2.5E-14 112.7 11.6 140 166-324 37-208 (279)
383 3fvq_A Fe(3+) IONS import ATP- 99.0 4.9E-10 1.7E-14 117.3 10.4 141 166-325 20-186 (359)
384 1g6h_A High-affinity branched- 99.0 4.4E-10 1.5E-14 113.1 9.7 140 166-324 23-200 (257)
385 2it1_A 362AA long hypothetical 99.0 9.8E-10 3.4E-14 115.4 12.6 141 166-324 19-180 (362)
386 4g1u_C Hemin import ATP-bindin 99.0 4.1E-10 1.4E-14 113.8 9.1 141 166-324 27-194 (266)
387 3d31_A Sulfate/molybdate ABC t 99.0 6E-10 2.1E-14 116.5 10.6 141 165-324 15-174 (348)
388 3rlf_A Maltose/maltodextrin im 99.0 7.5E-10 2.6E-14 116.7 10.9 142 166-325 19-181 (381)
389 2www_A Methylmalonic aciduria 99.0 2.8E-10 9.7E-15 119.8 7.5 157 177-374 75-279 (349)
390 1kk1_A EIF2gamma; initiation o 99.0 2E-10 6.7E-15 123.9 6.3 161 177-373 11-199 (410)
391 2yz2_A Putative ABC transporte 99.0 1.9E-09 6.5E-14 109.0 13.1 143 166-324 23-185 (266)
392 2qi9_C Vitamin B12 import ATP- 99.0 4.9E-10 1.7E-14 112.0 8.5 139 166-323 16-179 (249)
393 1oxx_K GLCV, glucose, ABC tran 99.0 9.6E-10 3.3E-14 115.4 10.9 141 166-325 21-188 (353)
394 1ji0_A ABC transporter; ATP bi 99.0 7.4E-10 2.5E-14 110.3 9.6 140 166-323 22-185 (240)
395 2j69_A Bacterial dynamin-like 99.0 9E-10 3.1E-14 126.2 11.6 173 176-374 69-325 (695)
396 2qm8_A GTPase/ATPase; G protei 99.0 3.5E-11 1.2E-15 126.1 -0.3 31 169-199 48-78 (337)
397 1g29_1 MALK, maltose transport 99.0 1.6E-09 5.4E-14 114.4 12.2 138 166-324 19-186 (372)
398 2yyz_A Sugar ABC transporter, 99.0 1.3E-09 4.5E-14 114.3 11.3 141 166-324 19-180 (359)
399 1h65_A Chloroplast outer envel 99.0 4.4E-10 1.5E-14 114.1 7.2 122 178-313 41-169 (270)
400 2pjz_A Hypothetical protein ST 99.0 1.7E-09 5.8E-14 108.9 11.1 132 166-320 21-171 (263)
401 3tr5_A RF-3, peptide chain rel 99.0 1.1E-10 3.8E-15 129.2 2.6 126 176-324 13-162 (528)
402 2d2e_A SUFC protein; ABC-ATPas 99.0 1.2E-09 4.2E-14 109.4 10.0 143 166-323 19-189 (250)
403 2elf_A Protein translation elo 99.0 6E-10 2E-14 118.1 7.8 149 178-375 23-181 (370)
404 3c5h_A Glucocorticoid receptor 99.0 2.1E-10 7.3E-15 115.4 4.1 91 255-372 163-253 (255)
405 1s0u_A EIF-2-gamma, translatio 99.0 2.9E-10 1E-14 122.5 5.0 161 177-373 9-197 (408)
406 1v43_A Sugar-binding transport 98.9 7.8E-10 2.7E-14 116.6 7.5 141 166-324 27-188 (372)
407 2pze_A Cystic fibrosis transme 98.9 1.3E-09 4.4E-14 107.7 8.3 134 166-314 24-167 (229)
408 2ixe_A Antigen peptide transpo 98.9 1.6E-09 5.6E-14 109.7 8.7 143 166-322 35-201 (271)
409 1zun_B Sulfate adenylate trans 98.9 7.3E-10 2.5E-14 120.3 6.4 156 177-364 25-214 (434)
410 3cb4_D GTP-binding protein LEP 98.9 1.2E-09 4.2E-14 122.2 8.0 157 176-373 4-181 (599)
411 2ff7_A Alpha-hemolysin translo 98.9 2.6E-09 9E-14 106.7 9.4 144 166-323 25-191 (247)
412 2ged_A SR-beta, signal recogni 98.9 5.9E-10 2E-14 106.6 4.4 121 177-314 49-172 (193)
413 3nh6_A ATP-binding cassette SU 98.9 1.6E-09 5.6E-14 111.3 7.9 143 166-323 70-236 (306)
414 3p32_A Probable GTPase RV1496/ 98.9 6.9E-10 2.4E-14 117.2 5.3 109 224-374 172-284 (355)
415 2ywe_A GTP-binding protein LEP 98.9 1.4E-09 4.9E-14 121.4 8.0 160 176-374 6-184 (600)
416 2c78_A Elongation factor TU-A; 98.9 3.9E-10 1.3E-14 121.4 3.2 147 177-360 12-180 (405)
417 3mca_A HBS1, elongation factor 98.9 3.7E-10 1.3E-14 126.9 3.2 160 176-362 177-371 (592)
418 2zu0_C Probable ATP-dependent 98.9 4E-09 1.4E-13 106.6 10.4 141 166-321 36-208 (267)
419 2cbz_A Multidrug resistance-as 98.9 9.1E-10 3.1E-14 109.4 5.0 138 166-318 21-168 (237)
420 1mv5_A LMRA, multidrug resista 98.9 9.5E-10 3.2E-14 109.7 4.9 147 166-323 18-185 (243)
421 2x2e_A Dynamin-1; nitration, h 98.8 4E-10 1.4E-14 119.0 1.1 25 177-201 32-56 (353)
422 3t34_A Dynamin-related protein 98.8 9E-10 3.1E-14 116.7 3.6 24 177-200 35-58 (360)
423 2dy1_A Elongation factor G; tr 98.8 6.5E-09 2.2E-13 118.6 10.1 118 171-311 4-139 (665)
424 1f60_A Elongation factor EEF1A 98.8 1.3E-09 4.6E-14 118.9 3.8 159 177-364 8-202 (458)
425 1zo1_I IF2, translation initia 98.8 3.7E-10 1.2E-14 123.6 -0.8 159 176-369 4-162 (501)
426 1nrj_B SR-beta, signal recogni 98.8 3.9E-09 1.3E-13 103.0 6.3 118 176-314 12-136 (218)
427 3zvr_A Dynamin-1; hydrolase, D 98.8 7.8E-10 2.7E-14 125.9 1.3 166 176-370 51-274 (772)
428 1jny_A EF-1-alpha, elongation 98.8 2.3E-09 7.8E-14 116.4 4.5 156 177-364 7-203 (435)
429 2qag_A Septin-2, protein NEDD5 98.8 2.8E-09 9.5E-14 112.7 5.0 59 178-236 39-107 (361)
430 2p67_A LAO/AO transport system 98.8 6.8E-10 2.3E-14 116.6 0.3 157 175-373 55-260 (341)
431 1g7s_A Translation initiation 98.8 2.9E-09 9.9E-14 119.3 5.2 170 177-373 6-217 (594)
432 2xex_A Elongation factor G; GT 98.8 1.9E-08 6.5E-13 115.1 10.8 125 177-324 11-155 (693)
433 1d2e_A Elongation factor TU (E 98.8 2E-09 7E-14 115.4 2.6 159 178-373 5-194 (397)
434 2bbs_A Cystic fibrosis transme 98.7 9.7E-09 3.3E-13 104.9 7.3 134 166-315 54-197 (290)
435 2ghi_A Transport protein; mult 98.7 6.3E-09 2.1E-13 104.8 5.5 145 166-323 36-201 (260)
436 2qpt_A EH domain-containing pr 98.7 1.2E-08 4E-13 113.7 7.3 124 177-316 66-236 (550)
437 2h5e_A Peptide chain release f 98.7 1.1E-08 3.9E-13 113.2 6.6 126 176-324 13-162 (529)
438 1tq4_A IIGP1, interferon-induc 98.7 7.3E-09 2.5E-13 110.6 4.8 161 178-377 71-256 (413)
439 1dar_A EF-G, elongation factor 98.7 2.9E-08 9.8E-13 113.6 10.0 115 176-313 12-144 (691)
440 3r7w_B Gtpase2, GTP-binding pr 98.7 3.9E-08 1.3E-12 101.3 9.9 167 178-372 1-172 (331)
441 3gd7_A Fusion complex of cysti 98.7 1.2E-08 4.2E-13 108.2 6.1 142 166-321 37-199 (390)
442 2yv5_A YJEQ protein; hydrolase 98.7 4.8E-08 1.6E-12 100.6 9.9 111 297-485 109-229 (302)
443 3bk7_A ABC transporter ATP-bin 98.6 2E-08 7E-13 112.8 6.7 137 168-324 374-518 (607)
444 4a82_A Cystic fibrosis transme 98.6 3.9E-08 1.3E-12 110.6 8.9 142 166-321 357-521 (578)
445 2yl4_A ATP-binding cassette SU 98.6 1.7E-08 5.8E-13 113.9 5.3 144 166-323 360-529 (595)
446 2qag_B Septin-6, protein NEDD5 98.6 1.4E-08 4.9E-13 108.3 4.3 70 166-236 30-107 (427)
447 1yrb_A ATP(GTP)binding protein 98.6 8.4E-08 2.9E-12 96.4 9.3 136 225-374 110-257 (262)
448 1yqt_A RNAse L inhibitor; ATP- 98.6 3.9E-08 1.3E-12 109.3 7.4 136 168-324 304-448 (538)
449 3b60_A Lipid A export ATP-bind 98.6 5.3E-08 1.8E-12 109.6 8.5 143 166-323 359-526 (582)
450 3b5x_A Lipid A export ATP-bind 98.6 6E-08 2.1E-12 109.2 8.8 143 166-322 359-525 (582)
451 3qf4_A ABC transporter, ATP-bi 98.6 5.9E-08 2E-12 109.2 8.3 144 165-322 358-524 (587)
452 1r5b_A Eukaryotic peptide chai 98.6 1.1E-08 3.7E-13 111.9 2.0 159 177-365 44-243 (467)
453 2qag_B Septin-6, protein NEDD5 98.6 1.1E-07 3.7E-12 101.6 9.2 71 414-485 30-108 (427)
454 3ozx_A RNAse L inhibitor; ATP 98.6 4.1E-08 1.4E-12 108.8 6.2 136 169-324 287-432 (538)
455 1u0l_A Probable GTPase ENGC; p 98.5 1.4E-07 4.9E-12 97.0 9.2 163 225-485 64-234 (301)
456 2rdo_7 EF-G, elongation factor 98.5 2.4E-07 8.2E-12 106.1 11.8 127 175-323 9-161 (704)
457 3ec1_A YQEH GTPase; atnos1, at 98.5 9.2E-09 3.1E-13 109.0 -0.1 119 177-314 163-290 (369)
458 3qf4_B Uncharacterized ABC tra 98.5 5.5E-08 1.9E-12 109.7 5.7 144 166-323 371-537 (598)
459 3avx_A Elongation factor TS, e 98.5 8E-08 2.7E-12 112.7 6.9 160 176-372 296-484 (1289)
460 2wsm_A Hydrogenase expression/ 98.5 6.8E-08 2.3E-12 94.4 5.4 61 297-374 153-214 (221)
461 2yv5_A YJEQ protein; hydrolase 98.5 1.9E-07 6.4E-12 96.1 8.3 88 498-617 75-164 (302)
462 2j37_W Signal recognition part 98.5 1.5E-07 5E-12 103.0 7.1 168 424-619 101-310 (504)
463 2qnr_A Septin-2, protein NEDD5 98.5 1.6E-07 5.6E-12 96.5 6.8 57 179-235 21-87 (301)
464 2qag_C Septin-7; cell cycle, c 98.5 1.6E-07 5.4E-12 100.7 6.8 59 179-237 34-101 (418)
465 1tq4_A IIGP1, interferon-induc 98.5 1.6E-06 5.3E-11 92.6 14.4 166 426-624 71-255 (413)
466 3j16_B RLI1P; ribosome recycli 98.4 3.2E-07 1.1E-11 103.0 8.5 140 167-324 364-514 (608)
467 4f4c_A Multidrug resistance pr 98.4 2E-07 6.9E-12 114.1 7.1 134 166-314 1095-1254(1321)
468 3l82_B F-box only protein 4; T 98.3 3.1E-07 1.1E-11 87.5 5.3 106 490-621 113-222 (227)
469 3g5u_A MCG1178, multidrug resi 98.3 5.1E-07 1.7E-11 110.3 8.4 141 166-321 406-570 (1284)
470 2rcn_A Probable GTPase ENGC; Y 98.3 1.6E-06 5.4E-11 90.6 11.0 112 297-485 159-281 (358)
471 1t9h_A YLOQ, probable GTPase E 98.3 4.6E-08 1.6E-12 100.4 -0.7 57 424-485 173-237 (307)
472 3sop_A Neuronal-specific septi 98.3 1.5E-06 5E-11 87.9 9.7 59 178-236 4-72 (270)
473 3h2y_A GTPase family protein; 98.3 7.8E-07 2.7E-11 94.0 7.9 102 490-620 57-158 (368)
474 2iw3_A Elongation factor 3A; a 98.3 7.6E-07 2.6E-11 104.0 8.3 46 166-222 689-734 (986)
475 3vqt_A RF-3, peptide chain rel 98.3 9.2E-07 3.2E-11 98.3 8.4 126 176-324 31-180 (548)
476 3sop_A Neuronal-specific septi 98.3 5E-06 1.7E-10 83.9 12.1 126 426-566 4-160 (270)
477 3g5u_A MCG1178, multidrug resi 98.3 1.4E-06 4.7E-11 106.5 9.2 142 166-322 1049-1216(1284)
478 4f4c_A Multidrug resistance pr 98.2 1.7E-06 5.7E-11 106.0 9.3 144 166-324 434-601 (1321)
479 2hf9_A Probable hydrogenase ni 98.2 2E-06 6.8E-11 84.1 7.4 60 297-373 163-223 (226)
480 1puj_A YLQF, conserved hypothe 98.2 4.7E-06 1.6E-10 84.7 10.2 103 477-622 4-106 (282)
481 1n0u_A EF-2, elongation factor 98.2 8.4E-07 2.9E-11 103.7 4.9 114 177-312 20-164 (842)
482 3j25_A Tetracycline resistance 98.1 6.4E-07 2.2E-11 101.6 1.7 116 176-314 2-135 (638)
483 3l2o_B F-box only protein 4; s 98.1 4.6E-06 1.6E-10 83.3 6.8 108 490-621 198-307 (312)
484 1f5n_A Interferon-induced guan 98.1 3.2E-06 1.1E-10 94.0 6.2 60 177-237 39-104 (592)
485 1f5n_A Interferon-induced guan 98.1 5.3E-06 1.8E-10 92.3 7.8 62 425-487 39-106 (592)
486 4gp7_A Metallophosphoesterase; 98.0 3.8E-06 1.3E-10 78.6 4.5 31 168-198 1-31 (171)
487 3cnl_A YLQF, putative uncharac 97.9 6.5E-06 2.2E-10 82.7 5.3 58 177-238 100-158 (262)
488 2v3c_C SRP54, signal recogniti 97.8 7.6E-06 2.6E-10 88.1 4.0 168 425-620 100-309 (432)
489 3dm5_A SRP54, signal recogniti 97.8 3.8E-05 1.3E-09 82.3 9.0 23 424-446 100-122 (443)
490 1htw_A HI0065; nucleotide-bind 97.8 2.1E-06 7.1E-11 79.4 -1.5 32 169-200 26-57 (158)
491 1z6g_A Guanylate kinase; struc 97.7 1.2E-05 4.2E-10 78.3 3.1 35 166-200 13-47 (218)
492 3ux8_A Excinuclease ABC, A sub 97.7 3.2E-05 1.1E-09 88.5 6.9 49 276-324 538-593 (670)
493 3e70_C DPA, signal recognition 97.7 9.7E-05 3.3E-09 76.5 8.9 26 422-447 127-152 (328)
494 4fn5_A EF-G 1, elongation fact 97.6 8.3E-05 2.8E-09 85.4 8.5 126 176-323 13-164 (709)
495 2j37_W Signal recognition part 97.6 4.1E-06 1.4E-10 91.6 -2.3 20 178-197 103-122 (504)
496 3szr_A Interferon-induced GTP- 97.6 0.00028 9.5E-09 79.5 12.4 24 425-448 46-69 (608)
497 3kl4_A SRP54, signal recogniti 97.6 8.1E-05 2.8E-09 79.7 7.5 22 424-445 97-118 (433)
498 1j8m_F SRP54, signal recogniti 97.6 0.00031 1.1E-08 71.7 11.3 29 417-446 92-120 (297)
499 3szr_A Interferon-induced GTP- 97.6 2.6E-05 8.7E-10 87.9 3.1 23 178-200 47-69 (608)
500 2yhs_A FTSY, cell division pro 97.5 0.00014 4.9E-09 78.6 7.7 32 416-447 285-316 (503)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=1.4e-61 Score=509.15 Aligned_cols=304 Identities=40% Similarity=0.729 Sum_probs=272.5
Q ss_pred ceeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCCc
Q psy1086 42 RFLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHRL 108 (654)
Q Consensus 42 ~f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~~ 108 (654)
+|||+++|+|+||+|||||++ +|||||+||||||+|++++ ||.+|++ +++|+|+||++|+++++
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~~~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~---~~~~~a~~g~~g~~~~~ 77 (342)
T 1lnz_A 1 MFVDQVKVYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVVFEVDEGLRTLMDFRY---KKHFKAIRGEHGMSKNQ 77 (342)
T ss_dssp CEEEEEEEEEECCCCCCCCCCBCCCSSSCCCCBCCCCCCCCCCEEEEECTTCCCSCGGGT---CCEEECCCCCCCCSTTC
T ss_pred CCcceEEEEEEecCCCCceeeeehhhcccCCCCCCCCCCCCCeEEEEeCCCcChHHHhCc---cceEEcCCCCCCCCCCC
Confidence 599999999999999999975 5999999999999999999 9999974 78999999999999999
Q ss_pred CCCCCCCEEEEcCCCcEEEe-cCcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEee
Q psy1086 109 AGRNGEDKILELPVGITAYA-DGGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELKL 175 (654)
Q Consensus 109 ~g~~g~~~~~~vp~gt~v~~-~~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk~ 175 (654)
+|++|+|++|+||+||+|+| +++++|+||+++++++++|+||+||+||++| .|++|+++.+.++||.
T Consensus 78 ~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~~~leLk~ 157 (342)
T 1lnz_A 78 HGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKV 157 (342)
T ss_dssp CCCCCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBTTBSSCCCCCCCCCCCEEEEEEEEEC
T ss_pred cCCCCCCEEEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccccccccccccCCCCcchhhHhhhhhh
Confidence 99999999999999999999 5899999999999999999999999999999 4889999999999999
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.++|+|||.||||||||+++|++.++.+++|||+|+.|..+.+.+++...+.++|+||++++++...++++.|++|++++
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999887568999999999998888889999999999999
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++++|+|+++. ..+.+++.+..+..++..|...+..+|.++|+||+|+....+..+.+.+.+...
T Consensus 238 d~ll~VvD~s~~------~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~-------- 303 (342)
T 1lnz_A 238 RVIVHVIDMSGL------EGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD-------- 303 (342)
T ss_dssp CEEEEEEESSCS------SCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC--------
T ss_pred cEEEEEEECCcc------cccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC--------
Confidence 999999999742 124677888888888888876678899999999999986554444443332210
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..++++||+++ ++++++++.|.+.+..
T Consensus 304 -----------~~v~~iSA~tg-~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 304 -----------YPVFPISAVTR-EGLRELLFEVANQLEN 330 (342)
T ss_dssp -----------CCBCCCSSCCS-STTHHHHHHHHHHHTS
T ss_pred -----------CCEEEEECCCC-cCHHHHHHHHHHHHhh
Confidence 25789999999 9999999999887654
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=5.6e-60 Score=507.72 Aligned_cols=299 Identities=38% Similarity=0.688 Sum_probs=271.9
Q ss_pred ceeeeEEEEEEeCCCCCCCCC------------CCCCCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCCc
Q psy1086 42 RFLDSLSLYVKGGSGGNGQPK------------YGGLGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHRL 108 (654)
Q Consensus 42 ~f~d~~~~~~~~g~gg~g~~~------------~gg~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~~ 108 (654)
+|||+++|+|+||+|||||++ +|||||+||||||++++++ ||.+| + ++||+|+||++|+++++
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~f~re~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~-~---~~~~~a~~g~~g~~~~~ 76 (416)
T 1udx_A 1 MFQDVLVITVAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGGSVYLRARGSVDSLSRL-S---KRTYKAEDGEHGRGSQQ 76 (416)
T ss_dssp CCCSEEEEEEECCCCCCCCCCBCCBTTBSCCCBCCCCCCCCCCEEEEECTTCCSSTTS-C---SSCEECCCCCCCBTTTB
T ss_pred CCcceEEEEEEecCCCCceeeeeccccccCCCCCCCCCCCCCeEEEEeCCCcCchhhh-h---hceEEcCCCCCCCCCCC
Confidence 599999999999999999975 5999999999999999999 99998 4 78999999999999999
Q ss_pred CCCCCCCEEEEcCCCcEEEe-cCcceeccccccCcEEEEeccCcCCCCCCCC------------cccccceeeEEEEEee
Q psy1086 109 AGRNGEDKILELPVGITAYA-DGGTKLGELNTEEDSIIIAHGGAGGNAQNGW------------LGRKGEELAVRLELKL 175 (654)
Q Consensus 109 ~g~~g~~~~~~vp~gt~v~~-~~~~~~~~l~~~~~~~~~a~Gg~gg~gn~~f------------~g~~Ge~~~i~L~lk~ 175 (654)
+|++|+|++|+||+||+|+| +++++++||+++++++++|+||+||+||.+| .|+|||+++++|+|+.
T Consensus 77 ~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~ 156 (416)
T 1udx_A 77 HGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELML 156 (416)
T ss_dssp CCCCCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECC
T ss_pred cCCCCCCEEEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeecccccCcccccCCCCceEeeeeeEEcC
Confidence 99999999999999999999 6899999999999999999999999999998 5899999999999999
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+++|+|||+|||||||||++|++..|.+++|||+|+.|..|.+.+++...++++|+||++++++...+++..++++++++
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876557999999999998888888888899999999
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++++|++ +.++..++.+++++..|+..+..+|.++++||+|+... ...+.+.+.+...
T Consensus 237 ~~lL~vvDls----------~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~-------- 297 (416)
T 1udx_A 237 RVLLYVLDAA----------DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALARE-------- 297 (416)
T ss_dssp SEEEEEEETT----------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTT--------
T ss_pred HhhhEEeCCc----------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhc--------
Confidence 9999999885 46788999999999999999999999999999999876 4444444443321
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ ++++++++.+.+.+..
T Consensus 298 ---------g-~~vi~iSA~~g-~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 298 ---------G-LAVLPVSALTG-AGLPALKEALHALVRS 325 (416)
T ss_dssp ---------T-SCEEECCTTTC-TTHHHHHHHHHHHHHT
T ss_pred ---------C-CeEEEEECCCc-cCHHHHHHHHHHHHHh
Confidence 0 25899999999 9999999999887754
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=2.1e-36 Score=330.73 Aligned_cols=344 Identities=19% Similarity=0.269 Sum_probs=215.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCcccccccc--cccchHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR--NLGMGHQFLRHVE 253 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~--~~~l~~~~l~~i~ 253 (654)
++|+|||.||+|||||+|.|++.+.. +.++|++|.+...+.+.+++ ..+.++||||+...... ...+..+...+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-eEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 47999999999999999999998765 57999999999999999987 58999999998654321 1223455666778
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHH-HHHHhccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGI-RDTLHNLKDHIH 332 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l-~~~~~~l~~~i~ 332 (654)
.+|++++|+|+... ..... .++..+... ..+|.++|+||+|+.... .... .++. .
T Consensus 81 ~ad~il~V~D~~~~--------~~~~d------~~i~~~l~~-~~~p~ilv~NK~D~~~~~--~~~~~~~~~-~------ 136 (439)
T 1mky_A 81 EADLVLFVVDGKRG--------ITKED------ESLADFLRK-STVDTILVANKAENLREF--EREVKPELY-S------ 136 (439)
T ss_dssp TCSEEEEEEETTTC--------CCHHH------HHHHHHHHH-HTCCEEEEEESCCSHHHH--HHHTHHHHG-G------
T ss_pred hCCEEEEEEECCCC--------CCHHH------HHHHHHHHH-cCCCEEEEEeCCCCcccc--HHHHHHHHH-h------
Confidence 88999999998631 01111 111111111 478999999999985321 1111 1111 1
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCC
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKG 412 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 412 (654)
.++..++++||+++ .|+++|++.+.+.+...... .. .. .
T Consensus 137 -----------lg~~~~~~iSA~~g-~gv~~L~~~i~~~l~~~~~~--------~~--------~~------------~- 175 (439)
T 1mky_A 137 -----------LGFGEPIPVSAEHN-INLDTMLETIIKKLEEKGLD--------LE--------SK------------P- 175 (439)
T ss_dssp -----------GSSCSCEECBTTTT-BSHHHHHHHHHHHHHHTTCC--------SS--------SC------------C-
T ss_pred -----------cCCCCEEEEeccCC-CCHHHHHHHHHHhccccccc--------ch--------hc------------c-
Confidence 12235789999999 99999999988766421000 00 00 0
Q ss_pred cceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc--
Q psy1086 413 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN-- 489 (654)
Q Consensus 413 ~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~-- 489 (654)
......+|+++|++|||||||+|++++.... .++.+++|.++..+.+.+++ ..+.+|||||+.+.....
T Consensus 176 -------~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-~~~~l~Dt~G~~~~~~~~~~ 247 (439)
T 1mky_A 176 -------EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RKYVFVDTAGLRRKSRVEPR 247 (439)
T ss_dssp -------CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-EEEEESSCSCC---------
T ss_pred -------ccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-EEEEEEECCCCccccccchh
Confidence 0012358999999999999999999998664 56789999999999999987 479999999986543321
Q ss_pred --cch-hHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH-H
Q psy1086 490 --LGM-GHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-Y 565 (654)
Q Consensus 490 --~~~-~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v-~ 565 (654)
+.+ ......+++.+|++++|+|++. ..+.+.. .+...+. ..++|+++|+||||+.+.+.. .
T Consensus 248 ~~e~~~~~~~~~~i~~ad~vllv~d~~~---------~~~~~~~-~i~~~l~-----~~~~~~ilv~NK~Dl~~~~~~~~ 312 (439)
T 1mky_A 248 TVEKYSNYRVVDSIEKADVVVIVLDATQ---------GITRQDQ-RMAGLME-----RRGRASVVVFNKWDLVVHREKRY 312 (439)
T ss_dssp --CCSCCHHHHHHHHHCSEEEEEEETTT---------CCCHHHH-HHHHHHH-----HTTCEEEEEEECGGGSTTGGGCH
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEeCCC---------CCCHHHH-HHHHHHH-----HcCCCEEEEEECccCCCchhhHH
Confidence 111 1334578899999999999983 2222221 1222221 247899999999999764331 2
Q ss_pred HHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 566 DGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
+++.+.+.. .+ .+..+.+++++||++|+ ||++||+.+.+.+...
T Consensus 313 ~~~~~~~~~---~~----------~~~~~~~~~~~SA~~g~-gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 313 DEFTKLFRE---KL----------YFIDYSPLIFTSADKGW-NIDRMIDAMNLAYASY 356 (439)
T ss_dssp HHHHHHHHH---HC----------GGGTTSCEEECBTTTTB-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---Hh----------ccCCCCcEEEEECCCCC-CHHHHHHHHHHHHHhh
Confidence 222222211 11 12345689999999999 9999999999877653
No 4
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=2.9e-37 Score=337.23 Aligned_cols=339 Identities=19% Similarity=0.262 Sum_probs=212.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCcccccccc-cccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~-~~~l~~~~l~~i~~ 254 (654)
.+|+|||+||+|||||+|+|++.... +.++|++|.+...+.+.+.+ ..+.++||||+...... ...+..+....++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS-SCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC-ceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 47999999999999999999997665 57899999999988888776 58999999998632211 11233445566788
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
+|++++|+|+... ... . ..++..+.. -..+|.++|+||+|+..... ...++.
T Consensus 83 ad~il~vvD~~~~--------~~~-~-----d~~~~~~l~-~~~~pvilv~NK~D~~~~~~----------~~~~~~--- 134 (436)
T 2hjg_A 83 ADVIIFMVNGREG--------VTA-A-----DEEVAKILY-RTKKPVVLAVNKLDNTEMRA----------NIYDFY--- 134 (436)
T ss_dssp CSEEEEEEETTTC--------SCH-H-----HHHHHHHHT-TCCSCEEEEEECCCC---------------CCCSSG---
T ss_pred CCEEEEEEeCCCC--------CCH-H-----HHHHHHHHH-HcCCCEEEEEECccCccchh----------hHHHHH---
Confidence 8999999998631 111 1 122222222 25789999999999864321 000110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcc
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEE 414 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 414 (654)
..++..++++||+++ .|+.+|++.+.+.++.... . . .
T Consensus 135 --------~lg~~~~~~iSA~~g-~gv~~L~~~i~~~l~~~~~----------~----------~----------~---- 171 (436)
T 2hjg_A 135 --------SLGFGEPYPISGTHG-LGLGDLLDAVAEHFKNIPE----------T----------K----------Y---- 171 (436)
T ss_dssp --------GGSSCCCEECBTTTT-BTHHHHHHHHHHTGGGCCS----------S----------C----------C----
T ss_pred --------HcCCCCeEEEeCcCC-CChHHHHHHHHHhcCcccc----------c----------c----------c----
Confidence 122346899999999 9999999998765532100 0 0 0
Q ss_pred eeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc---c
Q psy1086 415 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN---L 490 (654)
Q Consensus 415 ~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~---~ 490 (654)
-....+|+++|++|||||||+|++++..+. .+..+++|.+.....+.+++ ..+.+|||||+.+..... +
T Consensus 172 ------~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~e 244 (436)
T 2hjg_A 172 ------NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTAGMRKKGKVYETTE 244 (436)
T ss_dssp ------CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-EEEEETTHHHHTCBTTBCCCCS
T ss_pred ------cccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-eEEEEEECCCcCcCccccchHH
Confidence 011258999999999999999999998775 56789999999988888887 479999999987655432 2
Q ss_pred chhH-HHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH-HHHH
Q psy1086 491 GMGH-QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGI 568 (654)
Q Consensus 491 ~~~~-~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v-~~~~ 568 (654)
.+.. ....+++.||++++|+|++. ..+++.. .|...+. ..++|+|||+||||+.+.+.. .+++
T Consensus 245 ~~~~~~~~~~~~~ad~~llv~D~~~---------~~s~~~~-~~~~~~~-----~~~~~iiiv~NK~Dl~~~~~~~~~~~ 309 (436)
T 2hjg_A 245 KYSVLRALKAIDRSEVVAVVLDGEE---------GIIEQDK-RIAGYAH-----EAGKAVVIVVNKWDAVDKDESTMKEF 309 (436)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTT---------CCCHHHH-HHHHHHH-----HTTCEEEEEEECGGGSCCCTTHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCc---------CCcHHHH-HHHHHHH-----HcCCcEEEEEECccCCCcchHHHHHH
Confidence 2222 23468899999999999983 3344443 3444332 247999999999999765432 2223
Q ss_pred HHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 569 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.+.+.+ .+ .+..+++++++||++|+ ||+++|+.+.+.+...
T Consensus 310 ~~~~~~---~l----------~~~~~~~~~~~SA~tg~-~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 310 EENIRD---HF----------QFLDYAPILFMSALTKK-RIHTLMPAIIKASENH 350 (436)
T ss_dssp HHHHHH---HC----------GGGTTSCEEECCTTTCT-TGGGHHHHHHHHHHHH
T ss_pred HHHHHH---hc----------ccCCCCCEEEEecccCC-CHHHHHHHHHHHHHHh
Confidence 222221 11 11345689999999999 9999999999888653
No 5
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=4.7e-36 Score=329.55 Aligned_cols=340 Identities=19% Similarity=0.255 Sum_probs=213.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCcccccccc-cccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~-~~~l~~~~l~~i~~ 254 (654)
.+|+|||.||||||||+|+|++.+.. +.++|++|.....+.+.+.+ ..+.++||||+...... ...+.......++.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS-SCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC-ceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 57999999999999999999997654 67889999999988887766 58999999997632211 12233445566778
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
+|++++|+|.... ... ...++..+... ..+|.++|+||+|+...... ... +
T Consensus 103 ad~il~VvD~~~~--------~~~------~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~~-------~~e---~---- 153 (456)
T 4dcu_A 103 ADVIIFMVNGREG--------VTA------ADEEVAKILYR-TKKPVVLAVNKLDNTEMRAN-------IYD---F---- 153 (456)
T ss_dssp CSEEEEEEESSSC--------SCH------HHHHHHHHHTT-CCSCEEEEEECC----------------CC---S----
T ss_pred CCEEEEEEeCCCC--------CCh------HHHHHHHHHHH-cCCCEEEEEECccchhhhhh-------HHH---H----
Confidence 8899999997531 011 11222222222 57899999999998633210 000 0
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcc
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEE 414 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 414 (654)
...++..++++||.++ .++.+|++.+.+.+..... .
T Consensus 154 -------~~lg~~~~~~iSA~~g-~gv~~L~~~i~~~l~~~~~---------------------~--------------- 189 (456)
T 4dcu_A 154 -------YSLGFGEPYPISGTHG-LGLGDLLDAVAEHFKNIPE---------------------T--------------- 189 (456)
T ss_dssp -------GGGSSSSEEECCTTTC-TTHHHHHHHHHTTGGGSCS---------------------S---------------
T ss_pred -------HHcCCCceEEeecccc-cchHHHHHHHHhhcccccc---------------------c---------------
Confidence 0122346789999999 9999999888654321100 0
Q ss_pred eeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc---cc
Q psy1086 415 LAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR---NL 490 (654)
Q Consensus 415 ~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~---~~ 490 (654)
..-....+|+++|.+|+|||||+++|++... ..+..+++|.++....+.+++ ..+.+|||||+.+.... .+
T Consensus 190 ----~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~e 264 (456)
T 4dcu_A 190 ----KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTAGMRKKGKVYETTE 264 (456)
T ss_dssp ----CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-EEEEETTGGGTTTBTTBCCCCS
T ss_pred ----ccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-ceEEEEECCCCCcCcccchHHH
Confidence 0001235899999999999999999998764 456789999999999999887 48999999998765433 22
Q ss_pred chh-HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH-HHHH
Q psy1086 491 GMG-HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGI 568 (654)
Q Consensus 491 ~~~-~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v-~~~~ 568 (654)
.+. .....+++.||++++|+|++.. +. +....|...+.. .++|+|||+||||+.+.++. .+++
T Consensus 265 ~~~~~~~~~~~~~ad~~llviD~~~~---~~-------~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~ 329 (456)
T 4dcu_A 265 KYSVLRALKAIDRSEVVAVVLDGEEG---II-------EQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEF 329 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTC---CC-------HHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCC---cC-------HHHHHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHH
Confidence 233 2345688999999999999832 11 222333333321 46999999999999864332 2222
Q ss_pred HHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 569 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
.+.+. +.+ .+..++++++|||++|+ ||++||+.+.+.+....
T Consensus 330 ~~~~~---~~~----------~~~~~~~~~~~SA~~g~-gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 330 EENIR---DHF----------QFLDYAPILFMSALTKK-RIHTLMPAIIKASENHS 371 (456)
T ss_dssp HHHHH---HHC----------GGGTTSCEEECCTTTCT-TGGGHHHHHHHHHHHHT
T ss_pred HHHHH---Hhc----------ccCCCCCEEEEcCCCCc-CHHHHHHHHHHHHHHhc
Confidence 22222 221 12345789999999999 99999999999886543
No 6
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.91 E-value=1.7e-24 Score=213.25 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|||||||+++|+...+.....|+++.++....+.+++.. ++.||||||++++.. .+..|++.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~-------l~~~~~~~a 86 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS-------LIPSYIRDS 86 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG-------GHHHHHTTC
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh-------HHHHHhccc
Confidence 489999999999999999999987766667877888888888777643 688999999766543 344789999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|||++ ++.+|+.+..|..++.... ..+.|+|||+||+|+.+.+++..+..+.++.-
T Consensus 87 ~~~ilv~di~---------~~~Sf~~i~~~~~~i~~~~--~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-------- 147 (216)
T 4dkx_A 87 AAAVVVYDIT---------NVNSFQQTTKWIDDVRTER--GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-------- 147 (216)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH--------
T ss_pred cEEEEEeecc---------hhHHHHHHHHHHHHHHHhc--CCCCeEEEEeeccchHhcCcccHHHHhhHHHH--------
Confidence 9999999999 8899999999988876543 24689999999999987776665555555431
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+++||+|||++|. ||+++|+.|++.+..
T Consensus 148 ---------~~~~~~e~SAktg~-nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 148 ---------LNVMFIETSAKAGY-NVKQLFRRVAAALPG 176 (216)
T ss_dssp ---------HTCEEEEEBTTTTB-SHHHHHHHHHHHC--
T ss_pred ---------hCCeeEEEeCCCCc-CHHHHHHHHHHHHHh
Confidence 23468999999999 999999999987753
No 7
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=2.3e-22 Score=211.06 Aligned_cols=186 Identities=45% Similarity=0.778 Sum_probs=148.9
Q ss_pred CCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc
Q psy1086 411 KGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL 490 (654)
Q Consensus 411 ~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~ 490 (654)
+++...+.++++...+|+++|.+|+|||||+++|++....+.+++++|..+..+.+.+++...+.+|||||+.+..+...
T Consensus 145 ~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~ 224 (342)
T 1lnz_A 145 PGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGV 224 (342)
T ss_dssp CCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTT
T ss_pred CcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccc
Confidence 34455677888888899999999999999999999998888889999999999999988756899999999877655555
Q ss_pred chhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHH
Q psy1086 491 GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRD 570 (654)
Q Consensus 491 ~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~ 570 (654)
.+...++++++.++++++|+|+++.. .+.+++.+..|..++..+.....++|++||+||+|+....+..+
T Consensus 225 ~l~~~fl~~i~~~d~ll~VvD~s~~~------~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~---- 294 (342)
T 1lnz_A 225 GLGHQFLRHIERTRVIVHVIDMSGLE------GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLE---- 294 (342)
T ss_dssp TTHHHHHHHHHHCCEEEEEEESSCSS------CCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHH----
T ss_pred hhHHHHHHHHHhccEEEEEEECCccc------ccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHH----
Confidence 67788889999999999999998311 26788999999998877654446799999999999986543221
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
++.+.+. ...++|++||++++ ||++||+.|.+.+.+
T Consensus 295 ---~l~~~l~------------~~~~v~~iSA~tg~-gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 295 ---AFKEKLT------------DDYPVFPISAVTRE-GLRELLFEVANQLEN 330 (342)
T ss_dssp ---HHHHHCC------------SCCCBCCCSSCCSS-TTHHHHHHHHHHHTS
T ss_pred ---HHHHHhh------------cCCCEEEEECCCCc-CHHHHHHHHHHHHhh
Confidence 2222111 01358999999999 999999999988754
No 8
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=1.1e-21 Score=186.22 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=120.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC--ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~--~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|+|||||++++++..+.....++++.++....+.+++. ..+.+|||||+.++.. .+..+++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK-------MLDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-------THHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-------hhhHHHhh
Confidence 58999999999999999999987765444566667777788888763 4799999999765432 34478899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
+|++++|+|++ ++.+++.+..|..++..+.....+.| ++||+||+|+.+.+.+..+..+.+...
T Consensus 80 ~d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~------ 144 (178)
T 2hxs_A 80 AQGVLLVYDIT---------NYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE------ 144 (178)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH------
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH------
Confidence 99999999998 66788888888877765432222455 799999999976544332222222221
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...+++++||++|. ||+++|+.|.+.+
T Consensus 145 -----------~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 145 -----------NGFSSHFVSAKTGD-SVFLCFQKVAAEI 171 (178)
T ss_dssp -----------HTCEEEEECTTTCT-THHHHHHHHHHHH
T ss_pred -----------cCCcEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 12368999999999 9999999998765
No 9
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.86 E-value=2.7e-21 Score=181.92 Aligned_cols=164 Identities=16% Similarity=0.066 Sum_probs=113.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++........++++.+.....+.+++. ..+.+|||||+.+.... ....+++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------LQDHCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh------hhhhhhccC
Confidence 48999999999999999999987666666666677777777777763 26789999997654321 222567889
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|+++|+||+|+.+.+.+..+..+.+..
T Consensus 77 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------- 137 (169)
T 3q85_A 77 DAFLIVFSVT---------DRRSFSKVPETLLRLRAGR-PHHDLPVILVGNKSDLARSREVSLEEGRHLAG--------- 137 (169)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHS-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------ChHHHHHHHHHHHHHHhcc-cCCCCCEEEEeeCcchhhcccCCHHHHHHHHH---------
Confidence 9999999998 6788888888877765432 22378999999999998655544333333332
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.+++++||++|. ||+++|+.+.+.+..
T Consensus 138 --------~~~~~~~~~Sa~~~~-~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 138 --------TLSCKHIETSAALHH-NTRELFEGAVRQIRL 167 (169)
T ss_dssp --------HTTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred --------HcCCcEEEecCccCC-CHHHHHHHHHHHHHh
Confidence 122468999999999 999999999987653
No 10
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=186.46 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=128.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||+++|++..+.....++++.+.....+.+++.. .+.+|||||..++ ...+..+++.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ 88 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYYRG 88 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-------CTTHHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh-------hhhHHHHHhh
Confidence 3589999999999999999999988777778888888888888887632 6899999996543 3334578899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|...+.... ..+.|++||+||+|+.+.+.+.....+.+..
T Consensus 89 ~d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------- 149 (196)
T 3tkl_A 89 AHGIIVVYDVT---------DQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-------- 149 (196)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccccCHHHHHHHHH--------
Confidence 99999999998 6778888888887775442 2478999999999998665443333322322
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
..+++++++||++|. ||+++|+.+.+.+...
T Consensus 150 ---------~~~~~~~~~Sa~~g~-gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 150 ---------SLGIPFLETSAKNAT-NVEQSFMTMAAEIKKR 180 (196)
T ss_dssp ---------HTTCCEEEECTTTCT-THHHHHHHHHHHHHHH
T ss_pred ---------HcCCcEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 122468999999999 9999999999888653
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=183.32 Aligned_cols=164 Identities=15% Similarity=0.053 Sum_probs=124.9
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||+++|++..+.....++++.+.....+.+++. ..+.+|||||..+...... .+++.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~~ 81 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS-------TYYRG 81 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG-------GGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH-------HHhcc
Confidence 368999999999999999999998777777888888888888888763 2689999999766554433 56899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ +..+++.+..|..++... ..+.|++||+||+|+.+.+.+.......+..
T Consensus 82 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------- 141 (181)
T 3tw8_B 82 THGVIVVYDVT---------SAESFVNVKRWLHEINQN---CDDVCRILVGNKNDDPERKVVETEDAYKFAG-------- 141 (181)
T ss_dssp CSEEEEEEETT---------CHHHHHHHHHHHHHHHHH---CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHh---CCCCCEEEEEECCCCchhcccCHHHHHHHHH--------
Confidence 99999999998 677888888887776543 2468999999999987654433222222222
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
..+.+++++||++|. ||+++|+.+.+.+....
T Consensus 142 ---------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 142 ---------QMGIQLFETSAKENV-NVEEMFNCITELVLRAK 173 (181)
T ss_dssp ---------HHTCCEEECBTTTTB-SHHHHHHHHHHHHHHHH
T ss_pred ---------HcCCeEEEEECCCCC-CHHHHHHHHHHHHHHHh
Confidence 112468999999999 99999999998876543
No 12
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.8e-21 Score=188.29 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=125.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+. .+...+..+++.|
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE-------RFRSITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-------GGHHHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHHhcC
Confidence 58999999999999999999998776666777777777777888763 268999999953 3455566788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ..+.|++||+||+|+.+.+++..+..+.+...
T Consensus 100 d~~i~v~D~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-------- 160 (201)
T 2ew1_A 100 NALILTYDIT---------CEESFRCLPEWLREIEQYA--SNKVITVLVGNKIDLAERREVSQQRAEEFSEA-------- 160 (201)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH--------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHH--------
Confidence 9999999998 6778888888888776542 24689999999999976544433222223221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+.++|++||++|. ||+++|+.+.+.+..
T Consensus 161 ---------~~~~~~~~Sa~~g~-gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 161 ---------QDMYYLETSAKESD-NVEKLFLDLACRLIS 189 (201)
T ss_dssp ---------HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred ---------cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 12368999999999 999999999887653
No 13
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=185.48 Aligned_cols=163 Identities=17% Similarity=0.099 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|||||||+++|++........++++.++....+.+++.. .+.+|||||+.+.. ......+++.|
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~~~~ 97 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG------GWLRDHCLQTG 97 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch------hhhHHHhhccC
Confidence 589999999999999999998765544566777888877888887632 67899999975421 12344678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|+|||+||+|+.+.+.+..+..+.++..
T Consensus 98 d~~ilv~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-------- 159 (195)
T 3cbq_A 98 DAFLIVFSVT---------DRRSFSKVPETLLRLRAGR-PHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-------- 159 (195)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHS-TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH--------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeechhccccCCcCHHHHHHHHHH--------
Confidence 9999999998 7788888888887765432 124789999999999976544432222223221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...+++++||++|. ||+++|+.+.+.+.
T Consensus 160 ---------~~~~~~e~Sa~~~~-~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 160 ---------LSCKHIETSAALHH-NTRELFEGAVRQIR 187 (195)
T ss_dssp ---------TTCEEEEEBTTTTB-SHHHHHHHHHHHHH
T ss_pred ---------hCCEEEEEcCCCCC-CHHHHHHHHHHHHH
Confidence 12368999999999 99999999988764
No 14
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=3.9e-21 Score=183.98 Aligned_cols=164 Identities=16% Similarity=0.093 Sum_probs=125.7
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||++++++..+.....++++.++....+.+++.. .+.+|||||+. .+...+..+++.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~~~~~ 82 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE-------RFRSVTRSYYRG 82 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG-------GGHHHHHTTSTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH-------HHHHHHHHHHhc
Confidence 3589999999999999999999987776777777777777777777532 78999999953 355566678899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ ++.+++.+..|..++.... ..+.|++||+||+|+...+.+.......+..
T Consensus 83 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------- 143 (186)
T 2bme_A 83 AAGALLVYDIT---------SRETYNALTNWLTDARMLA--SQNIVIILCGNKKDLDADREVTFLEASRFAQ-------- 143 (186)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHH--------
Confidence 99999999998 6678888888877765432 2478999999999997554432222222221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
....+++++||++|. ||+++|+.+.+.+...
T Consensus 144 ---------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 144 ---------ENELMFLETSALTGE-NVEEAFVQCARKILNK 174 (186)
T ss_dssp ---------HTTCEEEECCTTTCT-THHHHHHHHHHHHHHH
T ss_pred ---------HcCCEEEEecCCCCC-CHHHHHHHHHHHHHHH
Confidence 122468999999999 9999999999877543
No 15
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.86 E-value=6.9e-21 Score=185.78 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=126.7
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.++..... .+++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~~~ 80 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS-------SYYRG 80 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-------GGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHH-------HhccC
Confidence 358999999999999999999998877667788888887777887763 2799999999876654433 67899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+....+..
T Consensus 81 ~d~vilv~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------- 141 (206)
T 2bcg_Y 81 SHGIIIVYDVT---------DQESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-------- 141 (206)
T ss_dssp CSEEEEEEETT---------CHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHH--------
Confidence 99999999998 6778888888887775442 2468999999999997654433222222322
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.++|++||++|. ||+++|+.|.+.+.+
T Consensus 142 ---------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 142 ---------ANKMPFLETSALDST-NVEDAFLTMARQIKE 171 (206)
T ss_dssp ---------HTTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred ---------HcCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 112468999999999 999999999987754
No 16
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=7.5e-21 Score=183.29 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=120.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.++... +..+++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI-------TRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-------CHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh-------HHHHhccC
Confidence 58999999999999999999998776666777777777777777652 27899999997665433 23788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+..
T Consensus 95 d~ii~v~d~~---------~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--------- 154 (191)
T 2a5j_A 95 AGALLVYDIT---------RRETFNHLTSWLEDARQHS--SSNMVIMLIGNKSDLESRRDVKREEGEAFAR--------- 154 (191)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCCccccCHHHHHHHHH---------
Confidence 9999999998 6678888888877775432 2478999999999997654433222222222
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.+++++||++|. ||+++|+.|.+.+.+
T Consensus 155 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 155 --------EHGLIFMETSAKTAC-NVEEAFINTAKEIYR 184 (191)
T ss_dssp --------HHTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 112368999999999 999999999887643
No 17
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=184.53 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=119.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+. .+...+..+++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------~~~~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE-------RFNSITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG-------GGHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH-------HHHHHHHHHhcCC
Confidence 58999999999999999999998776666777777777777777653 268999999953 3555677889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|...+... ...+.|++||+||+|+.+.+++..+..+.+.. .
T Consensus 100 d~iilV~D~~---------~~~s~~~~~~~~~~i~~~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~---~----- 160 (192)
T 2il1_A 100 KGIILVYDIT---------KKETFDDLPKWMKMIDKY--ASEDAELLLVGNKLDCETDREITRQQGEKFAQ---Q----- 160 (192)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH---T-----
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHH---h-----
Confidence 9999999998 667888888887776543 22478999999999997654443222222221 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.|.+.+.
T Consensus 161 --------~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 161 --------ITGMRFCEASAKDNF-NVDEIFLKLVDDIL 189 (192)
T ss_dssp --------STTCEEEECBTTTTB-SHHHHHHHHHHHHH
T ss_pred --------cCCCeEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 123468999999999 99999999987664
No 18
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=4.7e-21 Score=180.29 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=117.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++.++....+.+++.. .+.+|||||+.++.... ..+++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG-------PIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH-------HHHhccC
Confidence 589999999999999999999987766666777777776777776532 68999999976543322 2567899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++.... ..+.|+++|+||+|+.+.+.+..+..+.+..
T Consensus 80 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------- 139 (170)
T 1z08_A 80 NGAILVYDIT---------DEDSFQKVKNWVKELRKML--GNEICLCIVGNKIDLEKERHVSIQEAESYAE--------- 139 (170)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHH--GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccccCHHHHHHHHH---------
Confidence 9999999998 6678888888877765432 2468999999999997654433222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+.+++++||++|. ||+++|+.+.+.+
T Consensus 140 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 167 (170)
T 1z08_A 140 --------SVGAKHYHTSAKQNK-GIEELFLDLCKRM 167 (170)
T ss_dssp --------HTTCEEEEEBTTTTB-SHHHHHHHHHHHH
T ss_pred --------HcCCeEEEecCCCCC-CHHHHHHHHHHHH
Confidence 112468999999999 9999999998765
No 19
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.85 E-value=1.9e-21 Score=185.82 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=97.9
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||++++++..+.....++++.++....+.+++. ..+.+|||||+.++.... ..+++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~ 80 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TAYYRG 80 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C-------CTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH-------HHHHhc
Confidence 358999999999999999999987665555666677777777777652 378999999976554332 356889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+...
T Consensus 81 ~d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------- 142 (183)
T 2fu5_C 81 AMGIMLVYDIT---------NEKSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVNDKRQVSKERGEKLALD------- 142 (183)
T ss_dssp CSEEEEEEETT---------CHHHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-------
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccCCccCcCCHHHHHHHHHH-------
Confidence 99999999998 6678888888887775432 24689999999999976544322222222211
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+.++|++||++|. ||+++|+.|.+.+..
T Consensus 143 ----------~~~~~~~~Sa~~~~-~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 143 ----------YGIKFMETSAKANI-NVENAFFTLARDIKA 171 (183)
T ss_dssp ----------HTCEEEECCC---C-CHHHHHHHHHHHHHH
T ss_pred ----------cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 12368999999999 999999999887754
No 20
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.85 E-value=7.3e-21 Score=185.19 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=117.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+. .+...+..+++.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-------~~~~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE-------RFRTITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCG-------GGHHHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH-------hHHHHHHHHHhhC
Confidence 58999999999999999999998765555566666777777777752 278999999953 3555677889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+...
T Consensus 103 d~iilv~D~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-------- 163 (201)
T 2hup_A 103 NGAILAYDIT---------KRSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-------- 163 (201)
T ss_dssp SEEEEEEETT---------BHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCccccccccCHHHHHHHHHH--------
Confidence 9999999998 6778888888887776442 24689999999999976543322222222211
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....++|++||++|. ||+++|+.|.+.+.+
T Consensus 164 --------~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 164 --------YDILCAIETSAKDSS-NVEEAFLRVATELIM 193 (201)
T ss_dssp --------TTCSEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred --------cCCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 111268999999999 999999999887643
No 21
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.85 E-value=1.4e-20 Score=178.75 Aligned_cols=158 Identities=11% Similarity=0.105 Sum_probs=115.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|||||||++++++..+.. ..|+ +.+.....+.+++. ..+.+|||||+.+ ..+++.|
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-LEKT-ESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC-CSSC-SSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-cCCC-cceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhC
Confidence 589999999999999999999987654 3343 33444566666653 2688999999754 2678999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc-ccCCCCEEEEEeCCCccC--hHHHHHHHHHHHHhhHhhhc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-NLLEKPIILLVNKMDVEG--AQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~-~~~~~p~iiv~NK~Dl~~--~~~v~~~~~~~~~~~~~~~~ 580 (654)
|++++|||++ ++.+++.+..|.+++..... ...+.|++||+||+|+.+ .+.+..+..+.+...
T Consensus 74 d~~ilv~D~~---------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----- 139 (178)
T 2iwr_A 74 DAVIFVFSLE---------DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----- 139 (178)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH-----
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh-----
Confidence 9999999998 77889999888777765432 124789999999999842 222322222222210
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.++|++||++|. ||+++|+.+.+.+..
T Consensus 140 -----------~~~~~~~~~Sa~~~~-~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 140 -----------MKRCSYYETXATYGL-NVDRVFQEVAQKVVT 169 (178)
T ss_dssp -----------HSSEEEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred -----------hcCCeEEEEeccccC-CHHHHHHHHHHHHHH
Confidence 123478999999999 999999999887654
No 22
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=7.3e-21 Score=178.48 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=120.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++.++....+.+++. ..+.+|||||+.++... +..+++.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI-------TKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-------CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-------HHHHhcCC
Confidence 58999999999999999999998766666677777777777777652 37899999997655433 23778999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++.... .+.|+++|+||+|+.+.+.+..+..+.+.. .
T Consensus 79 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~----- 138 (168)
T 1z2a_A 79 QACVLVFSTT---------DRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAK---R----- 138 (168)
T ss_dssp CEEEEEEETT---------CHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHH---H-----
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHH---H-----
Confidence 9999999998 5677888877877765443 468999999999997654432222222221 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...+++++||++|. ||+++|+.|.+.+
T Consensus 139 ---------~~~~~~~~Sa~~~~-~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 139 ---------LKLRFYRTSVKEDL-NVSEVFKYLAEKH 165 (168)
T ss_dssp ---------HTCEEEECBTTTTB-SSHHHHHHHHHHH
T ss_pred ---------cCCeEEEEecCCCC-CHHHHHHHHHHHH
Confidence 12368999999999 9999999998765
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.85 E-value=7.1e-21 Score=178.94 Aligned_cols=160 Identities=15% Similarity=0.127 Sum_probs=119.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++.+.+.....+.+++. ..+.+|||||+.++. ..+..+++.+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYRGS 79 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCcCC
Confidence 58999999999999999999998765555555555555556666542 378999999975432 3344788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|...+... ...+.|+++|+||+|+.+.+++..+..+.+..
T Consensus 80 ~~~i~v~d~~---------~~~s~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~--------- 139 (170)
T 1z0j_A 80 AAAIIVYDIT---------KEETFSTLKNWVRELRQH--GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD--------- 139 (170)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHH--SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHh--CCCCCcEEEEEECCccccccccCHHHHHHHHH---------
Confidence 9999999998 667888888887777643 23468999999999998655443333322322
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|. ||+++|+.|.+.+
T Consensus 140 --------~~~~~~~~~Sa~~~~-~i~~l~~~i~~~i 167 (170)
T 1z0j_A 140 --------SIHAIFVETSAKNAI-NINELFIEISRRI 167 (170)
T ss_dssp --------HTTCEEEECBTTTTB-SHHHHHHHHHHHC
T ss_pred --------HcCCEEEEEeCCCCc-CHHHHHHHHHHHH
Confidence 112468999999999 9999999998754
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.2e-21 Score=185.86 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=125.8
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
...||+++|.+|+|||||+++|++..+.....++.+.+.....+.+++. ..+.+|||||. +.+...+..+++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------~~~~~~~~~~~~ 94 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ-------ERYRTITTAYYR 94 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH-------HHCHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh-------HHHHHHHHHHHc
Confidence 3468999999999999999999998776555566666666666666543 37999999994 345566778899
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.+|++++|||++ ++.+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+...
T Consensus 95 ~~d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------ 157 (191)
T 3dz8_A 95 GAMGFILMYDIT---------NEESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ------ 157 (191)
T ss_dssp TCCEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH------
T ss_pred cCCEEEEEEECc---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHH------
Confidence 999999999998 6788888888888776532 34789999999999976554433333333221
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.++++|++||++|. ||+++|+.|.+.+.+
T Consensus 158 -----------~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 158 -----------LGFDFFEASAKENI-SVRQAFERLVDAICD 186 (191)
T ss_dssp -----------HTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred -----------cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 12468999999999 999999999987754
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.85 E-value=1.2e-20 Score=180.20 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=118.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++... ...+.+++.. .+.+|||||+.++. ..+..+++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFS-------AMREQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGC-------SSHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhH-------HHHHHHHhcC
Confidence 5899999999999999999998755444444444333 5566666531 46679999965533 2334778999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+.+.+.+..+..+.+...
T Consensus 91 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-------- 152 (183)
T 3kkq_A 91 DGFLIVYSVT---------DKASFEHVDRFHQLILRVK-DRESFPMILVANKVDLMHLRKVTRDQGKEMATK-------- 152 (183)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHH-TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH--------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCCchhccCcCHHHHHHHHHH--------
Confidence 9999999998 6778888888887775432 235789999999999976554433333333221
Q ss_pred CCCCccccccccceEEEeee-cCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAK-TNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAk-tg~~gv~el~~~i~~~~~ 621 (654)
.+.+++++||+ +|. ||+++|+.+.+.+.
T Consensus 153 ---------~~~~~~~~Sa~~~~~-~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 153 ---------YNIPYIETSAKDPPL-NVDKTFHDLVRVIR 181 (183)
T ss_dssp ---------HTCCEEEEBCSSSCB-SHHHHHHHHHHHHH
T ss_pred ---------hCCeEEEeccCCCCC-CHHHHHHHHHHHHh
Confidence 12468999999 999 99999999998765
No 26
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=6.4e-21 Score=187.06 Aligned_cols=163 Identities=15% Similarity=0.084 Sum_probs=117.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.||+++|.+|||||||+++|++... +....++++.++....+.+++.. .+.+|||+|.... .......+++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~------~~~l~~~~~~~ 111 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE------NEWLHDHCMQV 111 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH------HHHHHHCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch------hhhHHHHHHhh
Confidence 5899999999999999999997544 33445667777777777787642 5689999995421 12223345788
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
++++++|||++ ++.+|+.+..|..++.... ...+.|+|||+||+|+.+.+++..+..+.++..
T Consensus 112 a~~~ilVydvt---------~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~------- 174 (211)
T 2g3y_A 112 GDAYLIVYSIT---------DRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVV------- 174 (211)
T ss_dssp CSEEEEEEETT---------CHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH-------
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH-------
Confidence 99999999998 7889999888877665321 124789999999999976554433333233221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+++|+|||++|+ ||+++|+.+++.+.
T Consensus 175 ----------~~~~~~e~SAk~g~-~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 175 ----------FDCKFIETSAAVQH-NVKELFEGIVRQVR 202 (211)
T ss_dssp ----------HTCEEEECBTTTTB-SHHHHHHHHHHHHH
T ss_pred ----------cCCEEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 12368999999999 99999999998764
No 27
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.85 E-value=1.5e-20 Score=178.34 Aligned_cols=161 Identities=19% Similarity=0.143 Sum_probs=120.5
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||++++++..+.....++++.+.....+.+++. ..+.+|||||+.+ +...+..+++.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 87 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYYRG 87 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG-------TCHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH-------hhhhHHHHhcc
Confidence 358999999999999999999998765555566666666666666652 2689999999543 44556688999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ +..+++.+..|..++.... ..+.|+++|+||+|+.+.+.+..+..+.+..
T Consensus 88 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------- 148 (179)
T 1z0f_A 88 AAGALMVYDIT---------RRSTYNHLSSWLTDARNLT--NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-------- 148 (179)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEeCc---------CHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHH--------
Confidence 99999999998 6677888888877765442 2478999999999997654432222222221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+.+++++||++|. ||+++|+.+.+.+
T Consensus 149 ---------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 ---------ENGLLFLEASAKTGE-NVEDAFLEAAKKI 176 (179)
T ss_dssp ---------HTTCEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred ---------HcCCEEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 112468999999999 9999999998765
No 28
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.85 E-value=1.7e-20 Score=181.32 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=116.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|||||||+++|++... +....++++.++....+.+++.. .+.+|||+|...... + ....+++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~----~--~~~~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENE----W--LHDHCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----C----T--TGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhh----h--HHHhhccc
Confidence 5899999999999999999998544 33445667777777777887642 567999999754211 0 11257889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|...+.... ...+.|+|+|+||+|+...+.+..+..+.++.
T Consensus 81 ~~~~i~v~dv~---------~~~s~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~-------- 142 (192)
T 2cjw_A 81 GDAYLIVYSIT---------DRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-------- 142 (192)
T ss_dssp CSEEEEEEETT---------CHHHHHHHHHHHHHHHHHT-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHhh-CCCCCeEEEEEechhhhccccccHHHHHHHHH--------
Confidence 99999999999 7889998888877665432 22468999999999997654433222222222
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....++++|||++|. ||+++|+.+++.+..
T Consensus 143 ---------~~~~~~~e~SA~~g~-~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 143 ---------VFDXKFIETSAAVQH-NVKELFEGIVRQVRL 172 (192)
T ss_dssp ---------HTTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred ---------HhCCceEEeccccCC-CHHHHHHHHHHHHHh
Confidence 112368999999999 999999999988754
No 29
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=9.3e-21 Score=178.13 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=115.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++.++....+.+++. ..+.+|||||..+.... +..+++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-------TTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-------CHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-------HHHHhccC
Confidence 58999999999999999999998776666777777777777777653 26899999997655433 23778999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|...+.... ..+.|+++|+||+|+... .+..+..+.+.. .
T Consensus 77 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~---~----- 136 (170)
T 1g16_A 77 MGIILVYDIT---------DERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETR-VVTADQGEALAK---E----- 136 (170)
T ss_dssp EEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCTTC-CSCHHHHHHHHH---H-----
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCCcC-ccCHHHHHHHHH---H-----
Confidence 9999999998 5667788888877765432 246899999999999432 222112222221 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+.+++++||++|. ||+++|+.+.+.+.+
T Consensus 137 ---------~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 ---------LGIPFIESSAKNDD-NVNEIFFTLAKLIQE 165 (170)
T ss_dssp ---------HTCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred ---------cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 12368999999999 999999999887753
No 30
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.85 E-value=1.3e-20 Score=179.04 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=119.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+. ..+++++.......+.+++. ..+.+|||||+.++... +..+++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM-------REQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-------HHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH-------HHHHHhhC
Confidence 58999999999999999999997543 34444444444456666653 26889999997654332 33678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+.+.+++..+..+.+..
T Consensus 82 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--------- 142 (181)
T 2fn4_A 82 HGFLLVFAIN---------DRQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLESQRQVPRSEASAFGA--------- 142 (181)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHH-TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEeCC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHH---------
Confidence 9999999998 6778888888877763322 23578999999999997655443333322322
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
..+.++|++||++|. ||+++|+.|.+.+.+.
T Consensus 143 --------~~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 143 --------SHHVAYFEASAKLRL-NVDEAFEQLVRAVRKY 173 (181)
T ss_dssp --------HTTCEEEECBTTTTB-SHHHHHHHHHHHHHHH
T ss_pred --------HcCCeEEEecCCCCC-CHHHHHHHHHHHHHHh
Confidence 123468999999999 9999999999887643
No 31
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=1.3e-20 Score=181.12 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=121.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||..++.... ..+++.+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT-------TAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG-------GGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH-------HHhccCC
Confidence 58999999999999999999998776555666666666666666542 378999999977654433 2678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+...
T Consensus 96 d~ii~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------- 156 (189)
T 2gf9_A 96 MGFLLMYDIA---------NQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPAEDGRRLADD-------- 156 (189)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCHHHHHHHHHH--------
Confidence 9999999998 6678888888877775432 24789999999999976544322222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+.++|++||++|. ||+++|+.|.+.+.+
T Consensus 157 ---------~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 157 ---------LGFEFFEASAKENI-NVKQVFERLVDVICE 185 (189)
T ss_dssp ---------HTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred ---------cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 12368999999999 999999999887643
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.85 E-value=9.9e-21 Score=180.15 Aligned_cols=162 Identities=18% Similarity=0.083 Sum_probs=122.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++.+.....+.+++. ..+.+|||||+.++ ...+..+++.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HSLAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG-------GGGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh-------hhhhHHHhccC
Confidence 58999999999999999999998776666677777777777777652 37899999996543 33344788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+++..+..+.+..
T Consensus 86 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~--------- 145 (181)
T 2efe_B 86 AAAIIVFDVT---------NQASFERAKKWVQELQAQG--NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ--------- 145 (181)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccccCCHHHHHHHHH---------
Confidence 9999999998 6677888888877775442 2478999999999997654432222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....+++++||++|. ||+++|+.|.+.+..
T Consensus 146 --------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 146 --------ENGLFFMETSAKTAT-NVKEIFYEIARRLPR 175 (181)
T ss_dssp --------HTTCEEEECCSSSCT-THHHHHHHHHHTCC-
T ss_pred --------HcCCEEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence 112468999999999 999999999886643
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=1.2e-20 Score=177.26 Aligned_cols=160 Identities=17% Similarity=0.097 Sum_probs=118.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC-CceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~-~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++.+.+.....+.+++ ...+.+|||||+.+ +...+..+++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 79 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER-------YHSLAPMYYRGA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-------hhhhhHHhccCC
Confidence 5899999999999999999999776655556555556556666654 23789999999654 333455788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ ++.+++.+..|..++.... ..+.|+++|+||+|+.+.+.+..+....+..
T Consensus 80 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~--------- 139 (170)
T 1r2q_A 80 QAAIVVYDIT---------NEESFARAKNWVKELQRQA--SPNIVIALSGNKADLANKRAVDFQEAQSYAD--------- 139 (170)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccccCHHHHHHHHH---------
Confidence 9999999998 6677888888877765432 2478999999999997654332222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|. ||+++|+.|.+.+
T Consensus 140 --------~~~~~~~~~Sa~~g~-gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 140 --------DNSLLFMETSAKTSM-NVNEIFMAIAKKL 167 (170)
T ss_dssp --------HTTCEEEECCTTTCT-THHHHHHHHHHTS
T ss_pred --------HcCCeEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 122468999999999 9999999998754
No 34
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=2.1e-20 Score=181.80 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=123.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+. .+...+..+++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE-------RYRTITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-------GGHHHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch-------hhcchHHHhhcCC
Confidence 58999999999999999999998776555666666666666666642 378999999964 3455666788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+...
T Consensus 82 d~ii~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------- 142 (203)
T 1zbd_A 82 MGFILMYDIT---------NEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSSERGRQLADH-------- 142 (203)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH--------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcccccCHHHHHHHHHH--------
Confidence 9999999998 6678888888887775432 24789999999999976544332222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.++++|++||++|. ||+++|+.|.+.+.+.
T Consensus 143 ---------~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 143 ---------LGFEFFEASAKDNI-NVKQTFERLVDVICEK 172 (203)
T ss_dssp ---------HTCEEEECBTTTTB-SSHHHHHHHHHHHHHH
T ss_pred ---------CCCeEEEEECCCCC-CHHHHHHHHHHHHHHH
Confidence 12368999999999 9999999999877543
No 35
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.85 E-value=7.6e-21 Score=178.88 Aligned_cols=158 Identities=26% Similarity=0.384 Sum_probs=110.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh--c
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE--R 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~--~ 502 (654)
.+|+++|++|+|||||+++|++..+.....|++|.+...+.+.+++ ..+.+|||||+.++..... .......+++ .
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~~~ 81 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSI-DEIIARDYIINEK 81 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-EEEEEEECCCCSCSSSSSH-HHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-cEEEEEECCCcccCCCcch-hHHHHHHHHhcCC
Confidence 5899999999999999999999877777788888888888888876 5899999999887643221 1122334554 8
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|+++ ++....|..++.. .+.|+|+|+||+|+...+.+..+. +.+++ .
T Consensus 82 ~~~~i~v~D~~~------------~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~---~---- 136 (165)
T 2wji_A 82 PDLVVNIVDATA------------LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDV-DKLEK---I---- 136 (165)
T ss_dssp CSEEEEEEETTC------------HHHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCH-HHHHH---H----
T ss_pred CCEEEEEecCCc------------hhHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHH-HHHHH---H----
Confidence 999999999982 2333445554432 368999999999986543322111 12221 1
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+.+++++||++|+ ||+++|+.+.+.+
T Consensus 137 ----------~~~~~~~~SA~~~~-~v~~l~~~l~~~~ 163 (165)
T 2wji_A 137 ----------LGVKVVPLSAAKKM-GIEELKKAISIAV 163 (165)
T ss_dssp ----------HTSCEEECBGGGTB-SHHHHHHHHHHHT
T ss_pred ----------hCCCEEEEEcCCCC-CHHHHHHHHHHHh
Confidence 12368999999999 9999999998765
No 36
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=8.8e-21 Score=178.12 Aligned_cols=160 Identities=20% Similarity=0.138 Sum_probs=120.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++.+.....+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER-------FASLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChh-------hhhhhhhhhccC
Confidence 48999999999999999999998776556676666666677777652 2789999999644 333455788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh---HHHHHHHHHHHHhhHhhhc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~---~~v~~~~~~~~~~~~~~~~ 580 (654)
|++++|+|++ ++.+++.+..|..++.... ..+.|+++|+||+|+... +++..+..+.+...
T Consensus 77 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~----- 140 (170)
T 1ek0_A 77 QAALVVYDVT---------KPQSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE----- 140 (170)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-----
T ss_pred cEEEEEEecC---------ChHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHH-----
Confidence 9999999998 6678888888877765432 247899999999999754 33333333323221
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
...+++++||++|. ||+++|+.+.+.+
T Consensus 141 ------------~~~~~~~~Sa~~~~-gi~~l~~~l~~~i 167 (170)
T 1ek0_A 141 ------------KGLLFFETSAKTGE-NVNDVFLGIGEKI 167 (170)
T ss_dssp ------------HTCEEEECCTTTCT-THHHHHHHHHTTS
T ss_pred ------------cCCEEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 12468999999999 9999999987643
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=180.76 Aligned_cols=162 Identities=17% Similarity=0.074 Sum_probs=120.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.++. ..+..+++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhccC
Confidence 58999999999999999999998776666666666666666666532 378999999976543 2344788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++... ...+.|++||+||+|+...+.+..+....+..
T Consensus 99 d~vi~v~D~~---------~~~s~~~~~~~l~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------- 158 (193)
T 2oil_A 99 VGALLVFDLT---------KHQTYAVVERWLKELYDH--AEATIVVMLVGNKSDLSQAREVPTEEARMFAE--------- 158 (193)
T ss_dssp CEEEEEEETT---------CHHHHHTHHHHHHHHHTT--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECCCcccccccCHHHHHHHHH---------
Confidence 9999999998 566777777777766432 23478999999999997654332222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+++++++||++|. ||+++|+.|.+.+.+
T Consensus 159 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 159 --------NNGLLFLETSALDST-NVELAFETVLKEIFA 188 (193)
T ss_dssp --------HTTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 122468999999999 999999999887643
No 38
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=1.1e-20 Score=181.80 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=121.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchh-HHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMG-HQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~-~~~~~~~~~ 502 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.+ +. ..+..+++.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 93 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER-------FRKSMVQHYYRN 93 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH-------HHTTTHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh-------hhhhhhHHHhcC
Confidence 58999999999999999999998776666777777777777777763 3789999999543 22 334578899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ +..+++.+..|..++.... ...+.|++||+||+|+.+.+++..+..+.+..
T Consensus 94 ~d~iilv~D~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------- 155 (189)
T 1z06_A 94 VHAVVFVYDMT---------NMASFHSLPAWIEECKQHL-LANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-------- 155 (189)
T ss_dssp CCEEEEEEETT---------CHHHHHTHHHHHHHHHHHC-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceeCHHHHHHHHH--------
Confidence 99999999998 6778888888887775542 23578999999999997654443333333322
Q ss_pred CCCCCccccccccceEEEeeecC---CCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTN---STDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg---~~gv~el~~~i~~~~~ 621 (654)
....+++++||++| . ||+++|+.|.+.+.
T Consensus 156 ---------~~~~~~~~~Sa~~~~~~~-~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 ---------THSMPLFETSAKNPNDND-HVEAIFMTLAHKLK 187 (189)
T ss_dssp ---------HTTCCEEECCSSSGGGGS-CHHHHHHHHC----
T ss_pred ---------HcCCEEEEEeCCcCCccc-CHHHHHHHHHHHHh
Confidence 11236899999999 8 99999999987653
No 39
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=1e-20 Score=180.30 Aligned_cols=163 Identities=19% Similarity=0.153 Sum_probs=119.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+. ..+++++.......+.+++.. .+.+|||||+.++..... .+++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ-------TYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG-------GGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH-------HHHhcC
Confidence 58999999999999999999987653 333344444446666666532 578999999877654433 567899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+.+.+.+..+..+.+..
T Consensus 79 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------- 139 (181)
T 3t5g_A 79 NGYILVYSVT---------SIKSFEVIKVIHGKLLDMV-GKVQIPIMLVGNKKDLHMERVISYEEGKALAE--------- 139 (181)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcceecHHHHHHHHH---------
Confidence 9999999998 6788888888887775432 23468999999999997655443333333322
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
....+++++||++|. ||+++|+.+.+.+...
T Consensus 140 --------~~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 140 --------SWNAAFLESSAKENQ-TAVDVFRRIILEAEKM 170 (181)
T ss_dssp --------HTTCEEEECCTTSHH-HHHHHHHHHHHHHHTC
T ss_pred --------HhCCcEEEEecCCCC-CHHHHHHHHHHHHHHh
Confidence 112468999999999 9999999999887643
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.2e-20 Score=179.48 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=117.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|+|||||++++++..+.. ...++++.+.....+.+++. ..+.+|||||+.++. ..+..+++.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 83 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYYRD 83 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHccC
Confidence 589999999999999999999987753 34566666666666666653 268999999965433 334467899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+...
T Consensus 84 ~d~ii~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------- 145 (180)
T 2g6b_A 84 AHALLLLYDVT---------NKASFDNIQAWLTEIHEYA--QHDVALMLLGNKVDSAHERVVKREDGEKLAKE------- 145 (180)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-------
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccCcccccCHHHHHHHHHH-------
Confidence 99999999998 6677888888877765442 25789999999999986544332222222221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.+.+++++||++|. ||+++|+.+.+.+.
T Consensus 146 ----------~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 146 ----------YGLPFMETSAKTGL-NVDLAFTAIAKELK 173 (180)
T ss_dssp ----------HTCCEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred ----------cCCeEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 12368999999999 99999999988775
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=182.87 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=113.5
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
...+|+++|.+|+|||||++++++..+.....++++.++....+.+++. ..+.+|||||+.+ +...+..+++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 99 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER-------FRSIAKSYFR 99 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTT-------CHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc-------hhhhHHHHHh
Confidence 3469999999999999999999998765555565566666666777653 2689999999543 4556678899
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh------HHHHHHHHHHHHhh
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA------QEIYDGIRDTLHNL 575 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~------~~v~~~~~~~~~~~ 575 (654)
.+|++++|||++ +..+++.+..|...+.... ..+.|++||+||+|+.+. +.+..+..+.+..
T Consensus 100 ~~d~iilv~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~- 167 (199)
T 2p5s_A 100 KADGVLLLYDVT---------CEKSFLNIREWVDMIEDAA--HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM- 167 (199)
T ss_dssp HCSEEEEEEETT---------CHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-
T ss_pred hCCEEEEEEECC---------ChHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccccccccccCHHHHHHHHH-
Confidence 999999999998 6778888888877765432 246899999999999632 1222222222221
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+++++++||++|. ||+++|+.|.+.+.
T Consensus 168 ----------------~~~~~~~~~SA~~g~-gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 ----------------TYGALFCETSAKDGS-NIVEAVLHLAREVK 196 (199)
T ss_dssp ----------------HHTCEEEECCTTTCT-THHHHHHHHHHHHT
T ss_pred ----------------HcCCeEEEeeCCCCC-CHHHHHHHHHHHHH
Confidence 112468999999999 99999999987663
No 42
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.84 E-value=5.5e-21 Score=185.89 Aligned_cols=163 Identities=17% Similarity=0.092 Sum_probs=114.6
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.++.. .+..+++.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~~ 97 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS-------VTRSYYRG 97 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC-------CCHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH-------HHHHHhcc
Confidence 358999999999999999999998776666777777777777777752 2789999999654332 23478899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ +..+++.+..|..++.... ..+.|++||+||+|+...+.+.......+..
T Consensus 98 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------- 158 (200)
T 2o52_A 98 AAGALLVYDIT---------SRETYNSLAAWLTDARTLA--SPNIVVILCGNKKDLDPEREVTFLEASRFAQ-------- 158 (200)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHT--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCcccccccCHHHHHHHHH--------
Confidence 99999999998 6678888888877765432 2478999999999997654432222222221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.+++++||++|. ||+++|+.|.+.+..
T Consensus 159 ---------~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 159 ---------ENELMFLETSALTGE-NVEEAFLKCARTILN 188 (200)
T ss_dssp ---------HTTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred ---------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 112468999999999 999999999887754
No 43
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=179.48 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=120.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+ ...+++++.......+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh-------hHHHHHHHHhhC
Confidence 5899999999999999999998765 334444445555566666653 2689999999644 445566788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ...+.|++||+||+|+.+.+++..+....+..
T Consensus 87 ~~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------- 147 (206)
T 2bov_A 87 EGFLCVFSIT---------EMESFAATADFREQILRVK-EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE--------- 147 (206)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHT-TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccCccccccccHHHHHHHHH---------
Confidence 9999999998 6778888888877775442 22478999999999997654432222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
..+.++|++||++|. ||+++|+.|.+.+...
T Consensus 148 --------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 148 --------QWNVNYVETSAKTRA-NVDKVFFDLMREIRAR 178 (206)
T ss_dssp --------HHTCEEEEECTTTCT-THHHHHHHHHHHHHHH
T ss_pred --------HhCCeEEEEeCCCCC-CHHHHHHHHHHHHHHc
Confidence 012368999999999 9999999999887543
No 44
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.84 E-value=1.4e-20 Score=176.38 Aligned_cols=160 Identities=18% Similarity=0.113 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.||+++|.+|+|||||++++++...... ..++++. ...+.+++. ..+.+|||||+.++. ..+..+++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGR-------WLPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEE---EEEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccce---EEEEEECCEEEEEEEEECCCCccch-------hhhhhhhhh
Confidence 5899999999999999999987654322 2233322 234455542 268899999976543 333467899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|..++.... ...+.|+++|+||+|+.+.+.+..+..+.+..
T Consensus 73 ~~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------- 134 (166)
T 3q72_A 73 GDAYVIVYSVT---------DKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVSVDEGRACAV-------- 134 (166)
T ss_dssp CCEEEEEEETT---------CHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHH--------
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccCHHHHHHHHH--------
Confidence 99999999998 6778888888877765432 23578999999999998665544433333332
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.+++++||++|. ||+++|+.+.+.+.+
T Consensus 135 ---------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 135 ---------VFDCKFIETSAALHH-NVQALFEGVVRQIRL 164 (166)
T ss_dssp ---------HTTCEEEECBGGGTB-SHHHHHHHHHHHHHH
T ss_pred ---------HhCCcEEEeccCCCC-CHHHHHHHHHHHHHh
Confidence 123478999999999 999999999887753
No 45
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-20 Score=186.37 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=117.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.++..... .+++.+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS-------AYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-------GGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH-------HHhccC
Confidence 58999999999999999999998877677777777887777877753 2789999999876654433 668899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+++..+....+..
T Consensus 87 d~vilV~D~~---------~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--------- 146 (223)
T 3cpj_B 87 VGALIVYDIS---------KSSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ--------- 146 (223)
T ss_dssp CEEEEEEC-C---------CHHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEeCC---------CHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccccCHHHHHHHHH---------
Confidence 9999999998 6778888888888775442 2468999999999997654443222222222
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+.+++++||++|. ||+++|+.|.+.+.
T Consensus 147 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 147 --------ENQLLFTETSALNSE-NVDKAFEELINTIY 175 (223)
T ss_dssp --------HTTCEEEECCCC-CC-CHHHHHHHHHHHHT
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 112468999999999 99999999998774
No 46
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=182.33 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=118.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++.+.+.....+.+++. ..+.+|||||+.++ ...+..+++.+
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 96 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF-------HSLAPMYYRGS 96 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG-------GGGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh-------HhhhHHhhccC
Confidence 58999999999999999999998765444555555555555555432 37999999996543 33344788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+.+..+..+.+..
T Consensus 97 d~iilV~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~--------- 156 (192)
T 2fg5_A 97 AAAVIVYDIT---------KQDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSDIREVPLKDAKEYAE--------- 156 (192)
T ss_dssp SEEEEEEETT---------CTHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEeCC---------CHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHH---------
Confidence 9999999998 6778888888888775442 2468999999999997544332222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.+++++||++|. ||+++|+.|.+.+.+
T Consensus 157 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 157 --------SIGAIVVETSAKNAI-NIEELFQGISRQIPP 186 (192)
T ss_dssp --------TTTCEEEECBTTTTB-SHHHHHHHHHHTCC-
T ss_pred --------HcCCEEEEEeCCCCc-CHHHHHHHHHHHHHh
Confidence 112468999999999 999999999887643
No 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=3.4e-20 Score=180.70 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=123.7
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.++..... .+++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~~~ 80 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV-------AFYRG 80 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-------GGGTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-------HHHhC
Confidence 358999999999999999999998776666777777777777777653 2789999999766544333 56889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+|++++|||++ +..+++.+..|..++..... ...+.|++||+||+|+.+.....++.. .+...
T Consensus 81 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----- 145 (207)
T 1vg8_A 81 ADCCVLVFDVT---------APNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ-AWCYS----- 145 (207)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHH-HHHHH-----
T ss_pred CcEEEEEEECC---------CHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHH-HHHHh-----
Confidence 99999999998 66788888888777654431 124689999999999974322222222 12110
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....++|++||++|. ||+++|+.|.+.+.+
T Consensus 146 -----------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 146 -----------KNNIPYFETSAKEAI-NVEQAFQTIARNALK 175 (207)
T ss_dssp -----------TTSCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred -----------cCCceEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 123468999999999 999999999987754
No 48
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=9.2e-21 Score=179.77 Aligned_cols=162 Identities=20% Similarity=0.253 Sum_probs=115.7
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccch-hHHHHHHh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGM-GHQFLRHV 500 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~-~~~~~~~~ 500 (654)
++.+|+++|.+|+|||||+++|++.... ....+++|.++....+.+++ ..+.+|||||+.+........ ......++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 3568999999999999999999987653 45678899999888898887 479999999987643221111 12234678
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+.+|++++|+|+++ +.+++. ..|..++... ...++|+|+|+||+|+.+... +.
T Consensus 82 ~~ad~~i~v~D~~~---------~~s~~~-~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~~~~-------------~~-- 134 (172)
T 2gj8_A 82 EQADRVLFMVDGTT---------TDAVDP-AEIWPEFIAR--LPAKLPITVVRNKADITGETL-------------GM-- 134 (172)
T ss_dssp HTCSEEEEEEETTT---------CCCCSH-HHHCHHHHHH--SCTTCCEEEEEECHHHHCCCC-------------EE--
T ss_pred HhCCEEEEEEECCC---------CCCHHH-HHHHHHHHHh--cccCCCEEEEEECccCCcchh-------------hh--
Confidence 99999999999983 333332 2454544332 124689999999999853210 00
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....+.+++++||++|. ||+++|+.|.+.+..
T Consensus 135 ---------~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 135 ---------SEVNGHALIRLSARTGE-GVDVLRNHLKQSMGF 166 (172)
T ss_dssp ---------EEETTEEEEECCTTTCT-THHHHHHHHHHHC--
T ss_pred ---------hhccCCceEEEeCCCCC-CHHHHHHHHHHHhhh
Confidence 00123578999999999 999999999887754
No 49
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.84 E-value=2.5e-20 Score=174.64 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=115.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....+++ .......+.+++. ..+.+|||||+.++. ..+..+++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQFT-------AMRDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCS-EEEEEEEEESSSCEEEEEEEEECSSCSST-------THHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc-cceEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 589999999999999999999976544444433 3333445555542 268999999975543 3445788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ ++.+++.+..|..++.... ...+.|+++|+||+|+.+.+.+..+..+.+.. .
T Consensus 76 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~----- 137 (167)
T 1c1y_A 76 QGFALVYSIT---------AQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLAR---Q----- 137 (167)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHH-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH---H-----
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhh-CcCCCcEEEEEECccccccccCCHHHHHHHHH---H-----
Confidence 9999999998 6677888887877765432 23578999999999997654432222222221 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....+++++||++|. ||+++|+.+.+.+
T Consensus 138 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 --------WCNCAFLESSAKSKI-NVNEIFYDLVRQI 165 (167)
T ss_dssp --------TTSCEEEECBTTTTB-SHHHHHHHHHHHH
T ss_pred --------ccCCcEEEecCCCCC-CHHHHHHHHHHHH
Confidence 123478999999999 9999999998765
No 50
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.84 E-value=3.6e-20 Score=178.01 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=120.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccce-eEEEEeCCC----------ceEEEEecCCCCCCCccccchh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN-VGVITFDDF----------RKMSVADLPGLIEGAHRNLGMG 493 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~-~~~v~~~~~----------~~~~i~DTpG~~~~~~~~~~~~ 493 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++. ...+.+++. ..+.+|||||+. .+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~ 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE-------RFR 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG-------GGH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH-------HHH
Confidence 58999999999999999999997765555565555555 445555542 379999999963 355
Q ss_pred HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHH
Q psy1086 494 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 573 (654)
Q Consensus 494 ~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~ 573 (654)
..+..+++.+|++++|+|++ +..+++.+..|..++.... ...+.|++||+||+|+.+.+.+..+..+.+.
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 154 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLT---------NEQSFLNVRNWISQLQMHA-YSENPDIVLCGNKSDLEDQRAVKEEEARELA 154 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETT---------CHHHHHTHHHHHHHHHHHS-SSSSCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 66778899999999999998 5677887777777765432 1247899999999999765433222222222
Q ss_pred hhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 574 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.. .+++++++||++|. ||+++|+.|.+.+.+
T Consensus 155 ~~-----------------~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 155 EK-----------------YGIPYFETSAANGT-NISHAIEMLLDLIMK 185 (195)
T ss_dssp HH-----------------HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred HH-----------------cCCCEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 11 12368999999999 999999999987754
No 51
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=3.6e-20 Score=175.56 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=119.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++.++....+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER-------FRSLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-------GHHHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh-------hhhhHHHHHhcC
Confidence 58999999999999999999998776666677777777777777763 2789999999543 445556788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
|++++|+|++ +..+++.+..|..++..... ...+.|+++|+||+|+.+.....++..+ +...
T Consensus 81 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~-~~~~------ 144 (177)
T 1wms_A 81 DCCLLTFSVD---------DSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA-WCRD------ 144 (177)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH-HHHH------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHH-HHHh------
Confidence 9999999998 66788888888877764432 1256899999999999732211222221 2110
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.+.+.+.
T Consensus 145 ----------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 ----------NGDYPYFETSAKDAT-NVAAAFEEAVRRVL 173 (177)
T ss_dssp ----------TTCCCEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred ----------cCCceEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 123468999999999 99999999987663
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=176.34 Aligned_cols=164 Identities=16% Similarity=0.093 Sum_probs=111.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+... .++++.+.....+.+++.. .+.+|||||+.... .......+++.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~~ 78 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD-----KSWSQESCLQGG 78 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC------------CHHHHHTTTSC
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccc-----hhhhHHhhcccC
Confidence 5899999999999999999998765433 3334445556667776532 68899999975421 222334677899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+.+.+++..+..+.+...
T Consensus 79 ~~~i~v~d~~---------~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-------- 140 (175)
T 2nzj_A 79 SAYVIVYSIA---------DRGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSVEEGRACAVV-------- 140 (175)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHH--------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCHHHHHHHHHH--------
Confidence 9999999998 6778888888877765431 124689999999999986554433222222211
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
...+++++||++|. ||+++|+.|.+.+.+
T Consensus 141 ---------~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 141 ---------FDCKFIETSATLQH-NVAELFEGVVRQLRL 169 (175)
T ss_dssp ---------HTSEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred ---------cCCeEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence 12468999999999 999999999887753
No 53
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.84 E-value=5.7e-20 Score=182.55 Aligned_cols=175 Identities=24% Similarity=0.305 Sum_probs=114.2
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccc-h-hHHHHHHhh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLG-M-GHQFLRHVE 501 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~-~-~~~~~~~~~ 501 (654)
..+|+++|.+|+|||||+++|++..+.....+++|.+.....+.+++ ..+.+|||||+.+....... . ...+..+++
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 107 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL-NKYQIIDTPGLLDRAFENRNTIEMTTITALAH 107 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT-EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC-CeEEEEECCCCcCcccchhhhHHHHHHHHhhc
Confidence 36899999999999999999999877656678888888777777766 47999999998654321111 1 122334578
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHH--HHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhh
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVE--TVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e--~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 579 (654)
.+|++++|+|+++ +.+++ ....|...+. ....+.|+++|+||+|+...+++.....+....+.+..
T Consensus 108 ~~d~~i~v~d~~~---------~~s~~~~~~~~~~~~l~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 175 (228)
T 2qu8_A 108 INGVILFIIDISE---------QCGLTIKEQINLFYSIK---SVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV 175 (228)
T ss_dssp SSEEEEEEEETTC---------TTSSCHHHHHHHHHHHH---TCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC
T ss_pred cccEEEEEEeccc---------ccCcchHHHHHHHHHHH---HhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc
Confidence 8999999999983 33332 2223333332 22237899999999999876554333222222221110
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
....++|++||++|. ||+++|+.|.+.+....
T Consensus 176 ------------~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 176 ------------KNPIKFSSFSTLTGV-GVEQAKITACELLKNDQ 207 (228)
T ss_dssp ------------CSCEEEEECCTTTCT-THHHHHHHHHHHHHHHH
T ss_pred ------------CCCceEEEEecccCC-CHHHHHHHHHHHHHHHH
Confidence 011468999999999 99999999998886543
No 54
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=1.4e-20 Score=178.51 Aligned_cols=160 Identities=11% Similarity=0.097 Sum_probs=121.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++.++....+.+++. ..+.+|||||+.++. ..+..+++.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 58999999999999999999988776667777777887788877763 268999999965433 3344778999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++.... ..+.|+++|+||+|+.+.+++..+....+..
T Consensus 88 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------- 147 (179)
T 2y8e_A 88 TVAVVVYDIT---------NTNSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK--------- 147 (179)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccCcCCHHHHHHHHH---------
Confidence 9999999998 5677888878877765432 2468999999999997654432222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+.+++++||++|. ||+++|+.|.+.+
T Consensus 148 --------~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 148 --------ELNVMFIETSAKAGY-NVKQLFRRVAAAL 175 (179)
T ss_dssp --------HHTCEEEEEBTTTTB-SHHHHHHHHHHTC
T ss_pred --------HcCCeEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 112468999999999 9999999998754
No 55
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.5e-20 Score=176.91 Aligned_cols=161 Identities=16% Similarity=0.197 Sum_probs=113.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....+++.... ...+..++. ..+.+|||||+.+ +...+..+++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQ-------FPAMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSS-------CHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchh-------hHHHHHHhcccC
Confidence 5899999999999999999998766444344332222 233344432 2689999999654 345566788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ ++.+++.+..|..++........+.|+++|+||+|+.+.+++.....+.+..
T Consensus 76 ~~~i~v~d~~---------~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~--------- 137 (172)
T 2erx_A 76 HAFILVYSIT---------SRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR--------- 137 (172)
T ss_dssp SEEEEEEETT---------CHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH---------
Confidence 9999999998 6677777777777765543333478999999999997654443322222222
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
....++|++||++|. ||+++|+.|.+.+
T Consensus 138 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 165 (172)
T 2erx_A 138 --------TWKCAFMETSAKLNH-NVKELFQELLNLE 165 (172)
T ss_dssp --------HHTCEEEECBTTTTB-SHHHHHHHHHHTC
T ss_pred --------HhCCeEEEecCCCCc-CHHHHHHHHHHHH
Confidence 112468999999999 9999999998754
No 56
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=8.2e-21 Score=184.65 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=118.4
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC-CceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~-~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
+..+|+++|.+|+|||||+++|++..+.....++++... ...+.+++ ...+.+|||||+.++..... .+++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~~ 94 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPY-------SFII 94 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCG-------GGTT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHH-------HHHh
Confidence 346899999999999999999999876644444433333 44444433 23689999999877654433 6788
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.+|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+...+.+.....+.+...
T Consensus 95 ~~d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------ 158 (201)
T 3oes_A 95 GVHGYVLVYSVT---------SLHSFQVIESLYQKLHEGH-GKTRVPVVLVGNKADLSPEREVQAVEGKKLAES------ 158 (201)
T ss_dssp TCCEEEEEEETT---------CHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHH------
T ss_pred cCCEEEEEEeCC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCccccccCHHHHHHHHHH------
Confidence 999999999998 6778888888887765332 224689999999999986654443333333321
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~ 624 (654)
.+.++|++||++|. ||+++|+.|.+.+.+..
T Consensus 159 -----------~~~~~~~~Sa~~~~-~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 159 -----------WGATFMESSARENQ-LTQGIFTKVIQEIARVE 189 (201)
T ss_dssp -----------HTCEEEECCTTCHH-HHHHHHHHHHHHHHHC-
T ss_pred -----------hCCeEEEEeCCCCC-CHHHHHHHHHHHHHhhh
Confidence 12468999999999 99999999998886543
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=2.7e-20 Score=174.15 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=117.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|++|+|||||++++++..+.....+ ++.+.....+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDP-TIEDFYRKEIEVDSSPSVLEILDTAGTEQ-------FASMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCT-TCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCC-CcceeEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHhccC
Confidence 5899999999999999999998766443333 333444556666653 2589999999544 444556788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++.... ...+.|+++|+||+|+.+.+++..+..+.+...
T Consensus 76 ~~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------- 137 (167)
T 1kao_A 76 QGFILVYSLV---------NQQSFQDIKPMRDQIIRVK-RYEKVPVILVGNKVDLESEREVSSSEGRALAEE-------- 137 (167)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHT-TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH--------
T ss_pred CEEEEEEeCC---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcccccccCCHHHHHHHHHH--------
Confidence 9999999998 6678888888877765432 224789999999999976544433222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...+++++||++|. ||+++|+.|.+.+.
T Consensus 138 ---------~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 ---------WGCPFMETSAKSKT-MVDELFAEIVRQMN 165 (167)
T ss_dssp ---------HTSCEEEECTTCHH-HHHHHHHHHHHHHH
T ss_pred ---------hCCCEEEecCCCCc-CHHHHHHHHHHHHh
Confidence 12368999999999 99999999988764
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=3.5e-20 Score=173.51 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=116.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.. .+++++.......+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVE-DYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCC----------CHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCC-CCCCCcceEEEEEEEECCEEEEEEEEECCCcch-------hHHHHHHHhhcC
Confidence 589999999999999999999976533 3334444444455566653 2689999999543 445566889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ...+.|+++|+||+|+.+.+++..+....+..
T Consensus 77 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------- 137 (168)
T 1u8z_A 77 EGFLCVFSIT---------EMESFAATADFREQILRVK-EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD--------- 137 (168)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHH-CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECccccccCccCHHHHHHHHH---------
Confidence 9999999998 6778888888877775443 22478999999999997654432222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.+.+.+.
T Consensus 138 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 138 --------QWNVNYVETSAKTRA-NVDKVFFDLMREIR 166 (168)
T ss_dssp --------HHTCEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred --------HcCCeEEEeCCCCCC-CHHHHHHHHHHHHH
Confidence 112368999999999 99999999988764
No 59
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.84 E-value=8e-20 Score=174.99 Aligned_cols=164 Identities=17% Similarity=0.155 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+ ...+++++.+.....+.+++.. .+.+|||||+.++.. .+..+++.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHHHHhcC
Confidence 5899999999999999999998764 3444555556666666676532 477899999765433 334778999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ...+.|+++|+||+|+.......+... .+.. .
T Consensus 77 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~-~~~~---~----- 137 (189)
T 4dsu_A 77 EGFLCVFAIN---------NTKSFEDIHHYREQIKRVK-DSEDVPMVLVGNKCDLPSRTVDTKQAQ-DLAR---S----- 137 (189)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHT-TCSCCCEEEEEECTTSSSCSSCHHHHH-HHHH---H-----
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECccCcccccCHHHHH-HHHH---H-----
Confidence 9999999998 6778888888887776532 235789999999999975322222222 2221 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAE 625 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~ 625 (654)
...+++++||++|. ||+++|+.+.+.+.....
T Consensus 138 ---------~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 138 ---------YGIPFIETSAKTRQ-GVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp ---------HTCCEEECCTTTCT-THHHHHHHHHHHHHHHHH
T ss_pred ---------cCCeEEEEeCCCCC-CHHHHHHHHHHHHHHhhh
Confidence 12368999999999 999999999998865433
No 60
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.83 E-value=8.2e-20 Score=174.46 Aligned_cols=162 Identities=14% Similarity=0.105 Sum_probs=118.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+. ..+++++.......+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCccceEEEEEEEECCEEEEEEEEECCCCcc-------cHHHHHHHhccC
Confidence 58999999999999999999987653 34444444445555666653 2689999999544 445566889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ...+.|++||+||+|+.+.+.+..+....+..
T Consensus 91 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------- 151 (187)
T 2a9k_A 91 EGFLCVFSIT---------EMESFAATADFREQILRVK-EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE--------- 151 (187)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHH-CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCHHHHHHHHH---------
Confidence 9999999998 6678888888877765443 22478999999999997654332222211211
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....++|++||++|. ||+++|+.|.+.+..
T Consensus 152 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 152 --------QWNVNYVETSAKTRA-NVDKVFFDLMREIRA 181 (187)
T ss_dssp --------HTTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred --------HcCCeEEEeCCCCCC-CHHHHHHHHHHHHHH
Confidence 112468999999999 999999999987753
No 61
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=4.2e-20 Score=180.90 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=122.8
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.++... +..+++.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI-------TTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-------CHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-------HHHHhcc
Confidence 468999999999999999999998776667788888887778887763 26899999997654332 3478899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ +..+++.+..|..++.... ..+.|++||+||+|+... .+..+..+.+.. .
T Consensus 93 ~d~ii~v~d~~---------~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~---~---- 153 (213)
T 3cph_A 93 AMGIILVYDVT---------DERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETR-VVTADQGEALAK---E---- 153 (213)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHT--TTCSEEEEEEECTTCSSC-CSCHHHHHHHHH---H----
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccc-ccCHHHHHHHHH---H----
Confidence 99999999998 5667787778877765432 236899999999999432 221111222221 0
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
..+++|++||++|. ||+++|+.|.+.+.+.
T Consensus 154 ----------~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 154 ----------LGIPFIESSAKNDD-NVNEIFFTLAKLIQEK 183 (213)
T ss_dssp ----------HTCCEEECBTTTTB-SSHHHHHHHHHHHHHH
T ss_pred ----------cCCEEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 12368999999999 9999999999877643
No 62
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=4.9e-20 Score=178.23 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=114.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|||||||+++|++..+.. ...++ .......+...+ ..+.+|||||+.++.. .+..+++.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 87 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITAT--VGYNVETFEKGR-VAFTVFDMGGAKKFRG-------LWETYYDNI 87 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCC--SSEEEEEEEETT-EEEEEEEECCSGGGGG-------GGGGGCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccc--cceeEEEEEeCC-EEEEEEECCCCHhHHH-------HHHHHHhcC
Confidence 589999999999999999999987765 33443 335555566555 4899999999765433 333678999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcc------cCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHh
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN------LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKD 577 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~------~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~ 577 (654)
|++++|||++ +..+++.+..|...+...... ..+.|+|||+||+|+...... +++.+.+. +..
T Consensus 88 d~ii~v~D~~---------~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~-~~~ 156 (199)
T 4bas_A 88 DAVIFVVDSS---------DHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA-AELVEILD-LTT 156 (199)
T ss_dssp SEEEEEEETT---------CGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-HHHHHHHT-HHH
T ss_pred CEEEEEEECC---------cHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-HHHHHHhc-chh
Confidence 9999999998 677888887776665432110 027899999999999765221 11221111 111
Q ss_pred hhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
... ....++|++||++|. ||+++|+.|.+.+.+
T Consensus 157 ~~~-----------~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 157 LMG-----------DHPFVIFASNGLKGT-GVHEGFSWLQETASR 189 (199)
T ss_dssp HHT-----------TSCEEEEECBTTTTB-THHHHHHHHHHHHHH
T ss_pred hcc-----------CCeeEEEEeeCCCcc-CHHHHHHHHHHHHHH
Confidence 100 133478999999999 999999999987754
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=3.5e-20 Score=176.22 Aligned_cols=165 Identities=17% Similarity=0.125 Sum_probs=115.1
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC--ceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~--~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
..+|+++|.+|+|||||++++++..+.....++++.++....+.+++. ..+.+|||||..++. ..+..+++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 80 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYR 80 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCST
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhh
Confidence 358999999999999999999998776666677777777777777632 378999999965433 33346788
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccChH-HHHHHHHHHHHhhHhh
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNLKDH 578 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~~-~v~~~~~~~~~~~~~~ 578 (654)
.+|++++|||++ +..+++.+..|..++..... ...+.|++||+||+|+.... .+..+....+.. .
T Consensus 81 ~~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~ 148 (182)
T 1ky3_A 81 GADCCVLVYDVT---------NASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---S 148 (182)
T ss_dssp TCCEEEEEEETT---------CHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---H
T ss_pred cCCEEEEEEECC---------ChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---h
Confidence 999999999998 66788888888877755431 12578999999999996432 222222222221 0
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.|.+.+.
T Consensus 149 -------------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 149 -------------LGDIPLFLTSAKNAI-NVDTAFEEIARSAL 177 (182)
T ss_dssp -------------TTSCCEEEEBTTTTB-SHHHHHHHHHHHHH
T ss_pred -------------cCCCeEEEEecCCCC-CHHHHHHHHHHHHH
Confidence 123468999999999 99999999987664
No 64
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=3.4e-20 Score=192.68 Aligned_cols=168 Identities=23% Similarity=0.308 Sum_probs=124.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc---cccchhHHHHHHh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH---RNLGMGHQFLRHV 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~---~~~~~~~~~~~~~ 500 (654)
-.|+++|.+|+|||||+|+|++..+.. +..+++|.....+.+..+...++.+|||||+.++.. ..+.+...+..++
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 469999999999999999999988764 567888988888888887235899999999976541 1233556677889
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc-ChHHHHHHHHHHHHhhHhhh
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE-GAQEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~ 579 (654)
+.||++++|+|++ +..+++....|.+.+. ..+.|+++|+||+|+. +....... .+.+.+ ..
T Consensus 91 ~~aD~il~VvD~~---------~~~~~~~~~~~~~~l~-----~~~~pvilV~NK~Dl~~~~~~~~~~-~~~l~~---~~ 152 (308)
T 3iev_A 91 EEADVILFMIDAT---------EGWRPRDEEIYQNFIK-----PLNKPVIVVINKIDKIGPAKNVLPL-IDEIHK---KH 152 (308)
T ss_dssp HHCSEEEEEEETT---------TBSCHHHHHHHHHHTG-----GGCCCEEEEEECGGGSSSGGGGHHH-HHHHHH---HC
T ss_pred hcCCEEEEEEeCC---------CCCCchhHHHHHHHHH-----hcCCCEEEEEECccCCCCHHHHHHH-HHHHHH---hc
Confidence 9999999999998 3444555555444442 2468999999999998 43333322 222222 11
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
..+.++|++||++|. ||++||+.+.+.+.+.
T Consensus 153 ------------~~~~~i~~vSA~~g~-gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 153 ------------PELTEIVPISALKGA-NLDELVKTILKYLPEG 183 (308)
T ss_dssp ------------TTCCCEEECBTTTTB-SHHHHHHHHHHHSCBC
T ss_pred ------------cCCCeEEEEeCCCCC-CHHHHHHHHHHhCccC
Confidence 133579999999999 9999999999988543
No 65
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=178.10 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=114.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|||||||++++++..+. ..+.+++.+.....+.+++. ..+.+|||||+.++... ..+++.+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~ 92 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC--------ERYLNWA 92 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT--------HHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH--------HHHHhhC
Confidence 58999999999999999999997654 33333333333444555542 26889999998765431 2688999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc-ccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~-~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
|++++|||++ ++.+++.+..|..++..... ...+.|++||+||+|+.+.+.+..+..+.+...
T Consensus 93 ~~~ilv~d~~---------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------- 156 (187)
T 3c5c_A 93 HAFLVVYSVD---------SRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR------- 156 (187)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-------
Confidence 9999999998 67889988888887765421 124789999999999976544433222223221
Q ss_pred CCCCCccccccccceEEEee-ecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISA-KTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSA-ktg~~gv~el~~~i~~~~~ 621 (654)
.+++++++|| ++|. ||+++|+.+.+.+.
T Consensus 157 ----------~~~~~~e~Sa~~~g~-gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 157 ----------FGCLFFEVSACLDFE-HVQHVFHEAVREAR 185 (187)
T ss_dssp ----------HTCEEEECCSSSCSH-HHHHHHHHHHHHHH
T ss_pred ----------cCCcEEEEeecCccc-cHHHHHHHHHHHHh
Confidence 1236899999 8999 99999999988764
No 66
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=7.2e-20 Score=171.21 Aligned_cols=160 Identities=21% Similarity=0.217 Sum_probs=113.6
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
+|+++|.+|+|||||++++++..+. ...| |.......+.+.+ ..+.+|||||+. .+...+..+++.+|+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~i~Dt~G~~-------~~~~~~~~~~~~~d~ 70 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-ISFTVWDVGGQD-------KIRPLWRHYFQNTQG 70 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSS-CEEEEEECCCCG-------GGHHHHHHHTTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECC-EEEEEEEcCCCh-------hhHHHHHHHhccCCE
Confidence 7999999999999999999987653 3344 4445556666665 489999999964 345566678999999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEE 585 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 585 (654)
+++|+|++ ++.+++.+..|..++... ....+.|+++|+||+|+.+.... .++.+.+.. ...
T Consensus 71 ~i~v~d~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~--~~~------ 131 (164)
T 1r8s_A 71 LIFVVDSN---------DRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNA-AEITDKLGL--HSL------ 131 (164)
T ss_dssp EEEEEETT---------CGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCH-HHHHHHTTG--GGC------
T ss_pred EEEEEECC---------CHHHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCCCH-HHHHHHhCc--ccc------
Confidence 99999998 667787777666655321 12347899999999999754211 112211110 000
Q ss_pred CCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 586 FQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 586 ~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.....+++++||++|. ||+++|+.+.+.+.
T Consensus 132 -----~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 132 -----RHRNWYIQATCATSGD-GLYEGLDWLSNQLR 161 (164)
T ss_dssp -----SSCCEEEEECBTTTTB-THHHHHHHHHHHC-
T ss_pred -----cCccEEEEEcccCCCc-CHHHHHHHHHHHHh
Confidence 0123468999999999 99999999987653
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.83 E-value=1.8e-20 Score=184.41 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=118.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-----------ceEEEEecCCCCCCCccccchh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-----------RKMSVADLPGLIEGAHRNLGMG 493 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-----------~~~~i~DTpG~~~~~~~~~~~~ 493 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+ +.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------~~~~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-------ERFR 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-------HHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-------HhHH
Confidence 58999999999999999999987765444555555665556666542 37999999994 3455
Q ss_pred HHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHH
Q psy1086 494 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 573 (654)
Q Consensus 494 ~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~ 573 (654)
..+..+++.+|++++|||++ +..+++.+..|..++.... ...+.|++||+||+|+.+.+.+..+..+.+.
T Consensus 99 ~~~~~~~~~~d~iilV~D~~---------~~~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~ 168 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLT---------SQQSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPDQREVNERQARELA 168 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETT---------CHHHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred hHHHHHhcCCCEEEEEEECc---------CHHHHHHHHHHHHHHHHhc-CcCCCCEEEEEECCccccccccCHHHHHHHH
Confidence 66778899999999999998 5667777766655442111 1147899999999999765444322222222
Q ss_pred hhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 574 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
. ..++++|++||++|. ||+++|+.|.+.+.+
T Consensus 169 ~-----------------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 169 D-----------------KYGIPYFETSAATGQ-NVEKAVETLLDLIMK 199 (217)
T ss_dssp H-----------------HTTCCEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred H-----------------HCCCcEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 2 112468999999999 999999999987754
No 68
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.83 E-value=8e-20 Score=175.25 Aligned_cols=156 Identities=16% Similarity=0.135 Sum_probs=113.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.||+++|.+|||||||++++++..+.....++ .......+.+++.. .+.+|||||+.++ .+++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------~~~~~~ 86 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPE--GGRFKKEIVVDGQSYLLLIRDEGGPPEL------------QFAAWV 86 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT--CEEEEEEEEETTEEEEEEEEECSSSCCH------------HHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC--cceEEEEEEECCEEEEEEEEECCCChhh------------heecCC
Confidence 58999999999999999999997765444332 33444667777632 5778999996442 178899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccC--hHHHHHHHHHHHHhhHhhhcc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG--AQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~--~~~v~~~~~~~~~~~~~~~~~ 581 (654)
|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+.. .+.+..+..+.+...
T Consensus 87 ~~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~------ 150 (184)
T 3ihw_A 87 DAVVFVFSLE---------DEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD------ 150 (184)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccCHHHHHHHHHH------
Confidence 9999999999 7788999888888775432 124689999999999852 233322222222221
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....++|++||++|. ||+++|+.+.+.+.
T Consensus 151 ----------~~~~~~~e~Sa~~~~-gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 151 ----------LKRCTYYETCATYGL-NVERVFQDVAQKVV 179 (184)
T ss_dssp ----------TTTCEEEEEBTTTTB-THHHHHHHHHHHHH
T ss_pred ----------cCCCeEEEecCCCCC-CHHHHHHHHHHHHH
Confidence 122468999999999 99999999988764
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.83 E-value=3.8e-20 Score=182.18 Aligned_cols=162 Identities=21% Similarity=0.142 Sum_probs=116.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC--ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~--~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|+|||||+++|++..+.....++++.......+...++ ..+.+|||||+.++.... ..+++.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~ 84 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK-------DVYYIG 84 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC-------HHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH-------HHHhhc
Confidence 58999999999999999999987654433344443344334433332 368999999987655333 267889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ +..+++.+..|..++.... ..+.|++||+||+|+.+.+++..+....+..
T Consensus 85 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------- 145 (218)
T 4djt_A 85 ASGAILFFDVT---------SRITCQNLARWVKEFQAVV--GNEAPIVVCANKIDIKNRQKISKKLVMEVLK-------- 145 (218)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHH--CSSSCEEEEEECTTCC----CCHHHHHHHTT--------
T ss_pred CCEEEEEEeCC---------CHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHH--------
Confidence 99999999998 6778888888887776543 2358999999999998654443333222211
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.++|++||++|. ||+++|+.+.+.+..
T Consensus 146 ---------~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 146 ---------GKNYEYFEISAKTAH-NFGLPFLHLARIFTG 175 (218)
T ss_dssp ---------TCCCEEEEEBTTTTB-TTTHHHHHHHHHHHC
T ss_pred ---------HcCCcEEEEecCCCC-CHHHHHHHHHHHHhc
Confidence 223579999999999 999999999988753
No 70
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=1.1e-19 Score=175.91 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=117.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC--------------------------------
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-------------------------------- 471 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-------------------------------- 471 (654)
..+|+++|.+|+|||||+++|++..+.....++++.++....+.+++.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 468999999999999999999998766555666666666666666542
Q ss_pred ------ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccC
Q psy1086 472 ------RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545 (654)
Q Consensus 472 ------~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~ 545 (654)
..+.+|||||+.++.. .+..+++.+|++++|+|++ +..+++.+..|..++... .
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~---------~~~s~~~~~~~~~~i~~~----~ 146 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDIS---------NSNTLDRAKTWVNQLKIS----S 146 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETT---------CHHHHHHHHHHHHHHHHH----S
T ss_pred cCccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECC---------CHHHHHHHHHHHHHHHhh----C
Confidence 3789999999655432 3457889999999999998 567788887787776543 2
Q ss_pred CCCEEEEEeCCCccChHHH-HHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 546 EKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 546 ~~p~iiv~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+.|+++|+||+| ...+++ .++..+.... ...+++++||++|. ||+++|+.|.+.+.+
T Consensus 147 ~~piilv~NK~D-~~~~~~~~~~~~~~~~~------------------~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 147 NYIIILVANKID-KNKFQVDILEVQKYAQD------------------NNLLFIQTSAKTGT-NIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCEEEEEEECTT-CC-CCSCHHHHHHHHHH------------------TTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCC-cccccCCHHHHHHHHHH------------------cCCcEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence 489999999999 433222 2222221111 12478999999999 999999999887643
No 71
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.82 E-value=2.5e-20 Score=181.57 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=87.5
Q ss_pred cceEEEEcCCCCChhhHHHHHHhc--CCCccCCCcccccceeEEEEeCCC---ceEEEEecCCCCCCCccccchhHHHHH
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRA--RPKIASYPFTTIKPNVGVITFDDF---RKMSVADLPGLIEGAHRNLGMGHQFLR 498 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~--~~~~~~~~~~t~~~~~~~v~~~~~---~~~~i~DTpG~~~~~~~~~~~~~~~~~ 498 (654)
..+|+++|.+|+|||||+++|++. .+.....++++.++....+.+++. ..+.+|||||+. .+...+..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~ 92 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------LYKEQISQ 92 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------HHHHHHST
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------HHHHHHHH
Confidence 358999999999999999999987 443333444445777778888762 479999999964 34445557
Q ss_pred HhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcc-cCCCCEEEEEeCCCccC-hHHHHHHHHHHHHhhH
Q psy1086 499 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEG-AQEIYDGIRDTLHNLK 576 (654)
Q Consensus 499 ~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~-~~~~p~iiv~NK~Dl~~-~~~v~~~~~~~~~~~~ 576 (654)
+++.+|++++|||++ +..+++.+..|..++...... ..+.|++||+||+|+.+ .+.+..+..+.+..
T Consensus 93 ~~~~~d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-- 161 (208)
T 2yc2_C 93 YWNGVYYAILVFDVS---------SMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-- 161 (208)
T ss_dssp TCCCCCEEEEEEETT---------CHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH--
T ss_pred HHhhCcEEEEEEECC---------CHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH--
Confidence 789999999999998 677888888888877654210 14789999999999986 44432222222221
Q ss_pred hhhccCCCCCCccccccccceEEEeeec-CCCChHHHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKT-NSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAkt-g~~gv~el~~~i~~~~~~ 622 (654)
. ...+++++||++ |. ||+++|+.|.+.+.+
T Consensus 162 -~--------------~~~~~~~~Sa~~~~~-gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 162 -T--------------NTLDFFDVSANPPGK-DADAPFLSIATTFYR 192 (208)
T ss_dssp -H--------------TTCEEEECCC--------CHHHHHHHHHHHH
T ss_pred -H--------------cCCEEEEeccCCCCc-CHHHHHHHHHHHHHH
Confidence 0 124689999999 99 999999999887754
No 72
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=7.3e-20 Score=176.33 Aligned_cols=162 Identities=19% Similarity=0.099 Sum_probs=119.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....++++.++....+.+++. ..+.+|||||+.++. ..+..+++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 88 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR-------TLTPSYYRGA 88 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC-------CSHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHHHhccC
Confidence 58999999999999999999998776666666666776677777653 378999999965533 2344788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++..+. ...+.|++||+||+|+.......++.. .+..
T Consensus 89 d~ii~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~--------- 148 (195)
T 1x3s_A 89 QGVILVYDVT---------RRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKENREVDRNEGL-KFAR--------- 148 (195)
T ss_dssp CEEEEEEETT---------CHHHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSSSCCSCHHHHH-HHHH---------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEECCcCcccccCHHHHH-HHHH---------
Confidence 9999999998 6677777777777664321 124689999999999954321111111 1211
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....+++++||++|. ||+++|+.|.+.+.+
T Consensus 149 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 149 --------KHSMLFIEASAKTCD-GVQCAFEELVEKIIQ 178 (195)
T ss_dssp --------HTTCEEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred --------HcCCEEEEecCCCCC-CHHHHHHHHHHHHHh
Confidence 112468999999999 999999999987754
No 73
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.82 E-value=3.4e-20 Score=175.91 Aligned_cols=166 Identities=22% Similarity=0.250 Sum_probs=117.0
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+..+|+++|.+|+|||||++++++..+.....+++|.+.....+.+++ ..+.+|||||+.++..... .+++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~-------~~~~~ 78 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-KKITFLDTPGHEAFTTMRA-------RGAQV 78 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT-EEEEESCCCSSSSSSCSCC-------SSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC-ceEEEEECCCCHHHHHHHH-------HHHhh
Confidence 446899999999999999999999887777778888888888888887 4799999999877654433 55789
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|+++ ....+.+..+ ..+ ...+.|+++|+||+|+.+.. .+++.+.+.+.. ..
T Consensus 79 ~d~~i~v~d~~~---------~~~~~~~~~l-~~~-----~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~----~~ 137 (178)
T 2lkc_A 79 TDIVILVVAADD---------GVMPQTVEAI-NHA-----KAANVPIIVAINKMDKPEAN--PDRVMQELMEYN----LV 137 (178)
T ss_dssp CCEEEEEEETTC---------CCCHHHHHHH-HHH-----GGGSCCEEEEEETTTSSCSC--HHHHHHHHTTTT----CC
T ss_pred CCEEEEEEECCC---------CCcHHHHHHH-HHH-----HhCCCCEEEEEECccCCcCC--HHHHHHHHHhcC----cC
Confidence 999999999983 2222222222 111 12468999999999997531 111221121111 00
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
...+ ....++|++||++|. ||+++|+.|.+.++..
T Consensus 138 ~~~~-----~~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 138 PEEW-----GGDTIFCKLSAKTKE-GLDHLLEMILLVSEME 172 (178)
T ss_dssp BTTT-----TSSEEEEECCSSSSH-HHHHHHHHHHHHHHHT
T ss_pred hhHc-----CCcccEEEEecCCCC-CHHHHHHHHHHhhhhh
Confidence 0001 122579999999999 9999999999887653
No 74
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=177.77 Aligned_cols=163 Identities=18% Similarity=0.105 Sum_probs=112.8
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
...+|+++|.+|+|||||++++++..+ ...+++++.+.....+.+++. ..+.+|||||+.++..... .+++
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~ 90 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP-------LCYT 90 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG-------GGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH-------hhcC
Confidence 346899999999999999999998763 444445555555556666653 2577999999877654332 5688
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHH------------HH
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYD------------GI 568 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~------------~~ 568 (654)
.+|++++|||++ ++.+++.+. .|..++.... .+.|++||+||+|+........ +.
T Consensus 91 ~~~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 91 NTDIFLLCFSVV---------SPSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSEEEEEEETT---------CHHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred CCcEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 999999999998 677888876 6777765432 3789999999999976432211 11
Q ss_pred HHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 569 RDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
...++. . ....++|++||++|. ||+++|+.+.+.+..
T Consensus 159 ~~~~~~---~-------------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 159 AKLLAE---E-------------IKAASYIECSALTQK-NLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHH---H-------------HTCSEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred HHHHHH---h-------------cCCcEEEEEecCCCC-CHHHHHHHHHHHHhc
Confidence 111111 0 122368999999999 999999999887643
No 75
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=9.3e-20 Score=171.55 Aligned_cols=163 Identities=21% Similarity=0.211 Sum_probs=113.9
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+..+|+++|.+|+|||||++++++..+. ...| |.......+.+++ ..+.+|||||+.++.. .+..+++.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~-------~~~~~~~~ 74 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIP--TIGFNVETVTYKN-LKFQVWDLGGLTSIRP-------YWRCYYSN 74 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCC--CSSEEEEEEEETT-EEEEEEEECCCGGGGG-------GGGGGCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCC--cCccceEEEEECC-EEEEEEECCCChhhhH-------HHHHHhcc
Confidence 3468999999999999999999987653 2333 3455566677775 5899999999765432 23367889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ +..+++.+..|...+... ....+.|++||+||+|+.+.... .++.+.+.. ....
T Consensus 75 ~d~ii~v~d~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~--~~~~-- 139 (171)
T 1upt_A 75 TDAVIYVVDSC---------DRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMTS-SEMANSLGL--PALK-- 139 (171)
T ss_dssp CSEEEEEEETT---------CCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTG--GGCT--
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHhc-hhhCCCEEEEEEECCCCcCCCCH-HHHHHHhCc--hhcc--
Confidence 99999999998 556677776665554321 11257899999999999764221 112221110 0010
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.+.+.+.
T Consensus 140 ---------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 140 ---------DRKWQIFKTSATKGT-GLDEAMEWLVETLK 168 (171)
T ss_dssp ---------TSCEEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred ---------CCceEEEECcCCCCc-CHHHHHHHHHHHHh
Confidence 123478999999999 99999999988764
No 76
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=1.2e-19 Score=177.83 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=116.9
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||++++++..+. ..+.+++.+.....+.+++. ..+.+|||||+.++..... .+++.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~~ 80 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP-------LSYRG 80 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-------GGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hhccC
Confidence 368999999999999999999987654 33334444444555666553 2789999999876654333 57899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHH--------HHHHHHHHH
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEI--------YDGIRDTLH 573 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v--------~~~~~~~~~ 573 (654)
+|++++|||++ ++.+++.+. .|..++.... .+.|++||+||+|+.+.+.+ ..+..+.+.
T Consensus 81 ~d~~ilv~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~ 148 (212)
T 2j0v_A 81 ADIFVLAFSLI---------SKASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR 148 (212)
T ss_dssp CSEEEEEEETT---------CHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH
Confidence 99999999998 677888876 6877775442 37899999999999765443 111111222
Q ss_pred hhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 574 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
. . ....++|++||++|. ||+++|+.+.+.+.+
T Consensus 149 ~---~-------------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 149 K---Q-------------IGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 180 (212)
T ss_dssp H---H-------------HTCSEEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred H---H-------------cCCceEEEccCCCCC-CHHHHHHHHHHHHhh
Confidence 1 1 122368999999999 999999999987753
No 77
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.8e-19 Score=174.29 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=117.7
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||++++++..+.....++++ ......+.+++. ..+.+|||||+.+ ...+..+++.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 98 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE-STYRHQATIDDEVVSMEILDTAGQED--------TIQREGHMRW 98 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCCC--------CHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCC-ceEEEEEEECCEEEEEEEEECCCCCc--------ccchhhhhcc
Confidence 46899999999999999999999776544444333 333444555542 3689999999765 2345578899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|..++.... ...+.|++||+||+|+.+.+++..+....+...
T Consensus 99 ~d~iilv~D~~---------~~~s~~~~~~~~~~i~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~------- 161 (196)
T 2atv_A 99 GEGFVLVYDIT---------DRGSFEEVLPLKNILDEIK-KPKNVTLILVGNKADLDHSRQVSTEEGEKLATE------- 161 (196)
T ss_dssp CSEEEEEEETT---------CHHHHHTHHHHHHHHHHHH-TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHHhh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH-------
Confidence 99999999998 6778888888877775532 224789999999999976544432222222221
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...++|++||++|..||+++|+.|.+.+.
T Consensus 162 ----------~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 162 ----------LACAFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp ----------HTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred ----------hCCeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 12468999999985489999999988764
No 78
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.82 E-value=8.1e-20 Score=176.12 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=114.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|++|+|||||++++.+..+.. . ..|.......+.+++ ..+.+|||||+.++.... ..+++.+|
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~~-~--~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~-------~~~~~~~d 92 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLAT-L--QPTWHPTSEELAIGN-IKFTTFDLGGHIQARRLW-------KDYFPEVN 92 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCC-C--CCCCSCEEEEEEETT-EEEEEEECCCSGGGTTSG-------GGGCTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCc-c--ccCCCCCeEEEEECC-EEEEEEECCCCHHHHHHH-------HHHHhcCC
Confidence 589999999999999999999876532 2 234455667788887 589999999986644322 25678999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC-
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP- 583 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~- 583 (654)
++++|+|++ ++.+++.+..|..++... ....+.|+++|+||+|+.+.. ..+++.+.+.. .....
T Consensus 93 ~~i~v~d~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~----~~~~~~ 157 (190)
T 1m2o_B 93 GIVFLVDAA---------DPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNAV-SEAELRSALGL----LNTTGS 157 (190)
T ss_dssp EEEEEEETT---------CGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTC----SSCCC-
T ss_pred EEEEEEECC---------ChHHHHHHHHHHHHHHcc-hhhcCCCEEEEEECCCCcCCC-CHHHHHHHhCC----cccccc
Confidence 999999998 677888888777666432 123578999999999997521 11222211110 00000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+.+ ......+++++||++|+ ||+++|+.+.+.
T Consensus 158 ~~~---~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~ 189 (190)
T 1m2o_B 158 QRI---EGQRPVEVFMCSVVMRN-GYLEAFQWLSQY 189 (190)
T ss_dssp --C---CSSCCEEEEECBTTTTB-SHHHHHHHHHTT
T ss_pred ccc---cccceEEEEEeECCcCC-CHHHHHHHHHhh
Confidence 000 11234579999999999 999999998753
No 79
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=2.1e-20 Score=204.45 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=114.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchh-HHHHHHhh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLRHVE 501 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~-~~~~~~~~ 501 (654)
+.+|+++|.+|+|||||+|+|++... ..+..+++|+++....+.+++ ..+.+|||||+.++....+.+. ..+..+++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-TMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-EEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-eEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 46899999999999999999999864 456789999999999999987 5899999999977543333221 33456789
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.||++++|+|+++ ..+++.+..+...+... .+.|+|+|+||+|+........ +.+.+ .
T Consensus 312 ~aD~vl~VvD~s~---------~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~---~~l~~---~--- 369 (476)
T 3gee_A 312 EADLILYLLDLGT---------ERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALI---RAIAD---G--- 369 (476)
T ss_dssp SCSEEEEEEETTT---------CSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHH---HHHHH---H---
T ss_pred cCCEEEEEEECCC---------CcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhH---HHHHh---c---
Confidence 9999999999983 33333233333333222 2689999999999987654321 11222 1
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH-HHHH---HhhHhHHHHHHHHHHHHHHHHhhhc
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD-LLAE---EEQEMVDRELELVKKLKSSLREHQG 650 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (654)
.+.++++|||++|+ ||++||+.|.+.+. .... ...-...|+.+..++..++|.++..
T Consensus 370 -----------~~~~~i~vSAktg~-GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~ 430 (476)
T 3gee_A 370 -----------TGTEVIGISALNGD-GIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALE 430 (476)
T ss_dssp -----------HTSCEEECBTTTTB-SHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred -----------CCCceEEEEECCCC-CHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 11368999999999 99999999999886 3221 1122457888888888888876654
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=4.6e-20 Score=175.67 Aligned_cols=161 Identities=15% Similarity=0.146 Sum_probs=105.7
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
...+|+++|.+|+|||||++++++..+.....+ ++.+.....+.+++. ..+.+|||||+.++.... ..+++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~ 78 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP-TVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR-------PLSYR 78 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTTTG-------GGGGT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-eeeeeEEEEEEECCEEEEEEEEECCCChhhhhhH-------Hhhcc
Confidence 346899999999999999999998765333333 333332222333331 256799999987654333 25688
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHH----------HHHHHH
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEI----------YDGIRD 570 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v----------~~~~~~ 570 (654)
.+|++++|+|++ ++.+++.+. .|..++.... .+.|++||+||+|+.+.+.. ..+..+
T Consensus 79 ~~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 79 GADVFILAFSLI---------SKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TCSEEEEEEETT---------CHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred CCCEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 999999999998 677888876 6777765442 37899999999999765543 111111
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.++. . ....+++++||++|. ||+++|+.+.+.+
T Consensus 147 ~~~~---~-------------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKK---L-------------IGAPAYIECSSKSQE-NVKGVFDAAIRVV 179 (182)
T ss_dssp HHHH---H-------------HTCSEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred HHHH---H-------------cCCCEEEEEECCCCC-CHHHHHHHHHHHH
Confidence 2221 1 122368999999999 9999999998754
No 81
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6.5e-20 Score=175.97 Aligned_cols=167 Identities=21% Similarity=0.207 Sum_probs=113.9
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|.+|+|||||++++++..+. ...| |.......+.+++ ..+.+|||||+.++.. .+..+++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 84 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVINN-TRFLMWDIGGQESLRS-------SWNTYYTNT 84 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEETT-EEEEEEECCC----CG-------GGHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEECC-EEEEEEECCCCHhHHH-------HHHHHhcCC
Confidence 368999999999999999999987654 3333 3345556677776 5899999999765433 234778999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++.... ...+.|+++|+||+|+.+... .+++.+.+.. .. ..
T Consensus 85 d~ii~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~-~~-~~--- 148 (187)
T 1zj6_A 85 EFVIVVVDST---------DRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKL-TS-IK--- 148 (187)
T ss_dssp CEEEEEEETT---------CTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTG-GG-CC---
T ss_pred CEEEEEEeCC---------CHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCC-HHHHHHHhCh-hh-hc---
Confidence 9999999998 5667888877776654321 125789999999999975321 1122221111 00 00
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEE 626 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~ 626 (654)
....+++++||++|. ||+++|+.|.+.+......
T Consensus 149 --------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 149 --------DHQWHIQACCALTGE-GLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp --------SSCEEEEECBTTTTB-THHHHHHHHHHHHCC----
T ss_pred --------CCCcEEEEccCCCCc-CHHHHHHHHHHHHHHHhhh
Confidence 123478999999999 9999999999887554443
No 82
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.82 E-value=6.5e-20 Score=177.05 Aligned_cols=160 Identities=17% Similarity=0.188 Sum_probs=113.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....+++ .......+.+++.. .+.+|||||+.++.... ..+++.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV-FENFSHVMKYKNEEFILHLWDTAGQEEYDRLR-------PLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS-EEEEEEEEEETTEEEEEEEEEECCSGGGTTTG-------GGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCccCCee-eeeeEEEEEECCEEEEEEEEECCCcHHHHHHh-------HhhccCC
Confidence 589999999999999999999987543334433 33334455565532 56999999976544332 3678899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccCh--HHHHHHHHHHHHhhHhhhc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGA--QEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~ 580 (654)
|++++|||++ ++.+++.+ ..|...+... ..+.|++||+||+|+.+. +.+..+..+.+...
T Consensus 96 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----- 158 (194)
T 3reg_A 96 DVVLLCFAVN---------NRTSFDNISTKWEPEIKHY---IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK----- 158 (194)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHTHHHHHHHH---CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-----
T ss_pred cEEEEEEECC---------CHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh-----
Confidence 9999999998 67788876 6677766543 246899999999999753 22322222222221
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....+++++||++|. ||+++|+.+.+.+.
T Consensus 159 -----------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 159 -----------LGCVAYIEASSVAKI-GLNEVFEKSVDCIF 187 (194)
T ss_dssp -----------HTCSCEEECBTTTTB-SHHHHHHHHHHHHH
T ss_pred -----------cCCCEEEEeecCCCC-CHHHHHHHHHHHHH
Confidence 111238999999999 99999999988764
No 83
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.7e-19 Score=174.07 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=114.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+. ..+.+++.+.....+.+++. ..+.+|||||+.++..... .+++.+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~~~~~ 90 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LSYPMT 90 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------GGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------HhcCCC
Confidence 58999999999999999999987543 33444444444556666653 2688999999876554332 568899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHH------------HHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYD------------GIRD 570 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~------------~~~~ 570 (654)
|++++|||++ ++.+++.+. .|..++.... .+.|++||+||+|+.+...... +...
T Consensus 91 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 91 DVFLICFSVV---------NPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 9999999998 677888776 6777765432 3789999999999976532211 1111
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.++. . ....++|++||++|. ||+++|+.+.+.+
T Consensus 159 ~~~~---~-------------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~i 191 (194)
T 2atx_A 159 KLAK---E-------------IGACCYVECSALTQK-GLKTVFDEAIIAI 191 (194)
T ss_dssp HHHH---H-------------HTCSCEEECCTTTCT-THHHHHHHHHHHH
T ss_pred HHHH---H-------------cCCcEEEEeeCCCCC-CHHHHHHHHHHHH
Confidence 1111 0 122368999999999 9999999998754
No 84
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=2.2e-19 Score=176.14 Aligned_cols=178 Identities=19% Similarity=0.246 Sum_probs=109.6
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCC--CceEEEEecCCCCCCCccccchhH-HHHHHh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD--FRKMSVADLPGLIEGAHRNLGMGH-QFLRHV 500 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~--~~~~~i~DTpG~~~~~~~~~~~~~-~~~~~~ 500 (654)
..+|+++|.+|+|||||+++|++..+ ...+++++.+.. .+.+++ ...+.+|||||+.+ +.. .+..++
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~ 76 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHES-------LRFQLLDRFK 76 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHH-------HHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcceeeE--EEEecCCCccEEEEEECCCChh-------HHHHHHHHHH
Confidence 36899999999999999999998764 344454444333 366663 24799999999643 444 455778
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH---HHHHHHHHHHhhH-
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE---IYDGIRDTLHNLK- 576 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~---v~~~~~~~~~~~~- 576 (654)
+.+|++++|||+++. .....+....|...+........+.|++||+||+|+..... +.+.+.+.+..+.
T Consensus 77 ~~~~~~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 77 SSARAVVFVVDSAAF-------QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRV 149 (214)
T ss_dssp GGEEEEEEEEETTTH-------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEECCCc-------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhc
Confidence 999999999999831 11122333334444432222334689999999999975432 2333333222110
Q ss_pred ----------------hhhccCCCCCCccccccccceEEEeeecC------CCChHHHHHHHHHH
Q psy1086 577 ----------------DHIHKYPEEFQPEKVIKFQSILPISAKTN------STDVNDAKLKIRSI 619 (654)
Q Consensus 577 ----------------~~~~~~~~~~~~~~~~~~~~~~~vSAktg------~~gv~el~~~i~~~ 619 (654)
......+..|.-......++||++||++| . ||+++|+.|.+.
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~-gv~~lf~~l~~~ 213 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSA-DIQDLEKWLAKI 213 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CC-BCHHHHHHHHHH
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccccc-ChHHHHHHHHHh
Confidence 01111111221111112567999999999 9 999999999875
No 85
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.81 E-value=4.9e-20 Score=181.25 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=116.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|||||||+++|++..+.....++++... ...+.+++. ..+.+|||||+.++.... ..+++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~ 98 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVR-------PLCYSD 98 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTG-------GGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHH-------HHHcCC
Confidence 35899999999999999999999876544445444333 444555543 278999999976554333 367899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHH-HHHHHHHHHHhhcccCCCCEEEEEeCCCccChH------------HHHHHHH
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVET-VLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ------------EIYDGIR 569 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~-~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~------------~v~~~~~ 569 (654)
||++++|||++ ++.+++. +..|..++.... .+.|++||+||+|+.+.. .+..+..
T Consensus 99 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 99 SDAVLLCFDIS---------RPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp CSEEEEEEETT---------CTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred CeEEEEEEECc---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 99999999999 6788887 688888776542 478999999999997531 1222222
Q ss_pred HHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCC-hHHHHHHHHHHHHH
Q psy1086 570 DTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD-VNDAKLKIRSILDL 622 (654)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~g-v~el~~~i~~~~~~ 622 (654)
..++.. ....++|+|||++|. | |+++|+.+.+.+..
T Consensus 167 ~~~~~~----------------~~~~~~~e~SA~~g~-g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 167 CAIAKQ----------------LGAEIYLEGSAFTSE-KSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHH----------------HTCSEEEECCTTTCH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHH----------------cCCCEEEEeccCCCc-ccHHHHHHHHHHHHhc
Confidence 222211 111268999999999 9 99999999987753
No 86
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=6.4e-20 Score=175.88 Aligned_cols=161 Identities=25% Similarity=0.355 Sum_probs=118.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh--c
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE--R 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~--~ 502 (654)
.+|+++|++|+|||||+++|++..+.....+++|.++..+.+.+++ ..+.+|||||+.++..... .......+++ .
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSI-DEIIARDYIINEK 85 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCCSCCSSSSH-HHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-cEEEEEECCCcCccccccH-HHHHHHHHHhccC
Confidence 5899999999999999999999877777788989988888888876 5899999999877643211 1122334554 4
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
++++++|+|+++ ++....|..++.. .+.|+++|+||+|+...+.+..... .+++ .
T Consensus 86 ~~~~i~v~d~~~------------~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~-~~~~---~---- 140 (188)
T 2wjg_A 86 PDLVVNIVDATA------------LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVD-KLEK---I---- 140 (188)
T ss_dssp CSEEEEEEEGGG------------HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHH-HHHH---H----
T ss_pred CCEEEEEecchh------------HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHH-HHHH---H----
Confidence 999999999972 3455556555432 4689999999999865433221111 1211 1
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.+.+++++||++|. ||+++|+.+.+.+...
T Consensus 141 ----------~~~~~~~~Sa~~~~-~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 141 ----------LGVKVVPLSAAKKM-GIEELKKAISIAVKDK 170 (188)
T ss_dssp ----------HTSCEEECBGGGTB-SHHHHHHHHHHHHTTC
T ss_pred ----------hCCCeEEEEecCCC-CHHHHHHHHHHHHHhc
Confidence 12368999999999 9999999999888643
No 87
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.81 E-value=8.1e-20 Score=178.20 Aligned_cols=165 Identities=16% Similarity=0.126 Sum_probs=114.4
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||++++++..+. ..+.+++.+.....+.+++.. .+.+|||||+.++.... ..+++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR-------PLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTG-------GGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHhcc
Confidence 368999999999999999999986553 334445555555666666532 45699999976544332 357889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhh
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNL 575 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~ 575 (654)
+|++++|||++ ++.+++.+. .|...+.... .+.|++||+||+|+.......+.+.+. ..+.
T Consensus 102 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 4gzl_A 102 TDVFLICFSLV---------SPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
T ss_dssp CSEEEEEEETT---------CHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHH
Confidence 99999999998 677888876 6777665432 478999999999998765433222110 0001
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.... ......++|++||++|. ||+++|+.+.+.
T Consensus 170 ~~~~----------~~~~~~~~~~~SA~~g~-gi~~l~~~l~~~ 202 (204)
T 4gzl_A 170 LAMA----------KEIGAVKYLECSALTQR-GLKTVFDEAIRA 202 (204)
T ss_dssp HHHH----------HHTTCSEEEECCTTTCT-THHHHHHHHHHT
T ss_pred HHHH----------HhcCCcEEEEeeCCCCC-CHHHHHHHHHHH
Confidence 1111 11233469999999999 999999999764
No 88
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.81 E-value=3.2e-19 Score=195.26 Aligned_cols=186 Identities=20% Similarity=0.253 Sum_probs=134.8
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCC-CCCccccchh-HHHHHHh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI-EGAHRNLGMG-HQFLRHV 500 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~-~~~~~~~~~~-~~~~~~~ 500 (654)
+.+|+++|.+|+|||||+|+|++..+ .+.+++++|+++....+.+++ ..+.+|||||+. ++....+.+. ..++.++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 46899999999999999999999865 467789999999999999986 589999999998 6654444443 4567899
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+.||++++|+|+++ ..+++....+ +.+ .++|+|+|+||+|+.+... .+++. + ..
T Consensus 322 ~~aD~vl~VvD~s~---------~~s~~~~~il-~~l-------~~~piivV~NK~DL~~~~~-~~~~~----~---~~- 375 (482)
T 1xzp_A 322 EKADIVLFVLDASS---------PLDEEDRKIL-ERI-------KNKRYLVVINKVDVVEKIN-EEEIK----N---KL- 375 (482)
T ss_dssp HHCSEEEEEEETTS---------CCCHHHHHHH-HHH-------TTSSEEEEEEECSSCCCCC-HHHHH----H---HH-
T ss_pred hcccEEEEEecCCC---------CCCHHHHHHH-HHh-------cCCCEEEEEECcccccccC-HHHHH----H---Hh-
Confidence 99999999999983 3344443222 211 3689999999999975311 11111 1 11
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH-HHHh--hHhHHHHHHHHHHHHHHHHhh
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL-AEEE--QEMVDRELELVKKLKSSLREH 648 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~ 648 (654)
....++++|||++|+ ||++||+.|.+.+... .... .-...|+.+..++..++|.++
T Consensus 376 -----------~~~~~~i~iSAktg~-Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~ 434 (482)
T 1xzp_A 376 -----------GTDRHMVKISALKGE-GLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDA 434 (482)
T ss_dssp -----------TCSTTEEEEEGGGTC-CHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHH
T ss_pred -----------cCCCcEEEEECCCCC-CHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHH
Confidence 012368999999999 9999999999876532 2111 123458888888888777654
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=172.54 Aligned_cols=165 Identities=16% Similarity=0.162 Sum_probs=116.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|.+|+|||||+++|++...+.... ..|.......+.+++ ..+.+|||||+.+.... +..+++.+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 91 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRNL-------WEHYYKEG 91 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSS-CEEEEEEECCSTTTGGG-------GGGGGGGC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECC-EEEEEEECCCCHHHHHH-------HHHHHhcC
Confidence 3689999999999999999999886333332 234556677777776 58999999997665432 33678999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhccc--CCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL--LEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
|++++|+|++ +..+++.+..|..++.... .. .+.|++||+||+|+.+.... +++.+.+. +....
T Consensus 92 d~ii~v~d~~---------~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~-~~~~~-- 157 (190)
T 2h57_A 92 QAIIFVIDSS---------DRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAVTS-VKVSQLLC-LENIK-- 157 (190)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCCCH-HHHHHHHT-GGGCC--
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCCCH-HHHHHHhC-hhhcc--
Confidence 9999999998 6677777777766654321 11 47899999999999754221 22222111 11100
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
....+++++||++|. ||+++|+.|.+.+++
T Consensus 158 ----------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 158 ----------DKPWHICASDAIKGE-GLQEGVDWLQDQIQT 187 (190)
T ss_dssp ----------SSCEEEEECBTTTTB-THHHHHHHHHHHC--
T ss_pred ----------CCceEEEEccCCCCc-CHHHHHHHHHHHHHH
Confidence 123478999999999 999999999987754
No 90
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.81 E-value=1.8e-21 Score=189.09 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=115.6
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||+++|++..+.....++++.+.....+.+++.. .+.+|||||..++..... .+++.
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~~ 105 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS-------SYYRG 105 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSC-------C--CC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHH-------HHhhc
Confidence 3689999999999999999999877766667777788888888887632 689999999877654443 57889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|...+... ...+.|++||+||+|+.+.+.+..+..+.+..
T Consensus 106 ~d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~--~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-------- 166 (199)
T 3l0i_B 106 AHGIIVVYDVT---------DQESFNNVKQWLQEIDRY--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-------- 166 (199)
T ss_dssp CSEEEECC-CC---------CSHHHHHHHHHHHHHHSC--C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHh--ccCCCCEEEEEECccCCccccCCHHHHHHHHH--------
Confidence 99999999998 677888888887776433 22478999999999997654332211111211
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+++++++||++|. ||+++|+.|.+.+.
T Consensus 167 ---------~~~~~~~~vSA~~g~-gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 ---------SLGIPFLETSAKNAT-NVEQSFMTMAAEIK 195 (199)
T ss_dssp ---------TTTCCBCCCCC---H-HHHHHHHHHTTTTT
T ss_pred ---------HcCCeEEEEECCCCC-CHHHHHHHHHHHHH
Confidence 123468999999999 99999999987553
No 91
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.7e-19 Score=174.44 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=113.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....+++.. .....+.+++. ..+.+|||||+.+ +...+..+++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 80 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED-TYRQVISCDKSVCTLQITDTTGSHQ-------FPAMQRLSISKG 80 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCE-EEEEEEEETTEEEEEEEEECCGGGS-------CHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccc-ceeEEEEECCEEEEEEEEeCCChHH-------hHHHHHHhhccC
Confidence 58999999999999999999997665443443322 22233444432 2689999999644 345566788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|...+........+.|++||+||+|+.... +..+....+..
T Consensus 81 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~--------- 141 (199)
T 2gf0_A 81 HAFILVFSVT---------SKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTREAQAVAQ--------- 141 (199)
T ss_dssp SEEEEEEETT---------CHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHHHHHHHH---------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHHHHHHHH---------
Confidence 9999999998 6677777777776665543223468999999999997532 21111111211
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
....++|++||++|. ||+++|+.|.+.+.
T Consensus 142 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 142 --------EWKCAFMETSAKMNY-NVKELFQELLTLET 170 (199)
T ss_dssp --------HHTCEEEECBTTTTB-SHHHHHHHHHHHCS
T ss_pred --------HhCCeEEEEecCCCC-CHHHHHHHHHHHHh
Confidence 012368999999999 99999999998764
No 92
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=1.5e-19 Score=175.54 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=109.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|++|||||||++++.+..+.. ..| |..+....+.+++ .++.+|||||+.++.... ..+++.+|
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~-------~~~~~~~d 94 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVP--TLHPTSEELTIAG-MTFTTFDLGGHIQARRVW-------KNYLPAIN 94 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-------C--CCCCSCEEEEETT-EEEEEEEECC----CCGG-------GGGGGGCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCc-cCC--CCCceeEEEEECC-EEEEEEECCCcHhhHHHH-------HHHHhcCC
Confidence 589999999999999999999876432 222 3444567788887 589999999987654432 36788999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ ++.+++.+..|..++.... ...+.|+++|+||+|+.+.. ..+++.+.+... . .....
T Consensus 95 ~~i~v~D~~---------~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~-~--~~~~~ 160 (198)
T 1f6b_A 95 GIVFLVDCA---------DHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAI-SEERLREMFGLY-G--QTTGK 160 (198)
T ss_dssp EEEEEEETT---------CGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCC-CHHHHHHHHTCT-T--TCCCS
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccC-CHHHHHHHhCcc-c--ccccc
Confidence 999999998 6678888877776654321 23578999999999997521 112222211110 0 00000
Q ss_pred CC--CccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EF--QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~--~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.. .........+++++||++|+ ||+++|+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~ 196 (198)
T 1f6b_A 161 GSVSLKELNARPLEVFMCSVLKRQ-GYGEGFRWMAQY 196 (198)
T ss_dssp SCCCTTTCCSCCEEEEECBTTTTB-SHHHHHHHHHTT
T ss_pred cccccccccCceEEEEEEECCCCC-CHHHHHHHHHHh
Confidence 00 00001234579999999999 999999998764
No 93
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=4.8e-19 Score=165.17 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=114.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+... .++++.+.....+.+++. ..+.+|||||..++ ...+..+++.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-CDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC-------CHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc-cCCccceEEEEEEEECCEEEEEEEEECCCchhh-------hHHHHHhhccC
Confidence 4899999999999999999998755433 333333444455566543 25789999996543 33455788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++.... ...+.|+++|+||+|+.......++.. .+.. .
T Consensus 76 ~~~i~v~d~~---------~~~~~~~~~~~~~~i~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~---~----- 136 (166)
T 2ce2_X 76 EGFLCVFAIN---------NTKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKSDLAARTVESRQAQ-DLAR---S----- 136 (166)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHH-TCSCCCEEEEEECTTCSCCCSCHHHHH-HHHH---H-----
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEchhhhhcccCHHHHH-HHHH---H-----
Confidence 9999999998 6677888888877765443 224689999999999876322122222 1221 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...+++++||++|. |++++|+.+.+.+.
T Consensus 137 ---------~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 137 ---------YGIPYIETSAKTRQ-GVEDAFYTLVREIR 164 (166)
T ss_dssp ---------HTCCEEEECTTTCT-THHHHHHHHHHHHH
T ss_pred ---------cCCeEEEecCCCCC-CHHHHHHHHHHHHH
Confidence 12368999999999 99999999988764
No 94
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=1.3e-19 Score=174.20 Aligned_cols=163 Identities=19% Similarity=0.186 Sum_probs=114.2
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|.+|+|||||+++|++..+.....++++ .....+...+ ..+.+|||||+.+ +...+..+++.+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 91 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN-VTIKLWDIGGQPR-------FRSMWERYCRGV 91 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--EEEEEEEETT-EEEEEEEECCSHH-------HHTTHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCc--eeEEEEEeCC-EEEEEEECCCCHh-------HHHHHHHHHccC
Confidence 46899999999999999999998776544444333 3334455655 4899999999643 334455788999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ ++.+++.+..|..++... ....+.|++||+||+|+...... .++.+.+. ...
T Consensus 92 d~ii~v~D~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~---~~~---- 153 (188)
T 1zd9_A 92 SAIVYMVDAA---------DQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALDE-KELIEKMN---LSA---- 153 (188)
T ss_dssp SEEEEEEETT---------CGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCCH-HHHHHHTT---GGG----
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCCCH-HHHHHHhC---hhh----
Confidence 9999999998 667788777776655322 11257899999999999754211 11111111 000
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
......++|++||++|. ||+++|+.|.+.+.
T Consensus 154 ------~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 154 ------IQDREICCYSISCKEKD-NIDITLQWLIQHSK 184 (188)
T ss_dssp ------CCSSCEEEEECCTTTCT-THHHHHHHHHHTCC
T ss_pred ------hccCCeeEEEEECCCCC-CHHHHHHHHHHHHH
Confidence 00133568999999999 99999999987654
No 95
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=1.9e-19 Score=171.95 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+... +.+++.+.....+.+++. ..+.+|||||+.++.... ..+++.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSS-CCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTG-------GGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCC-cCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHH-------HHhccCC
Confidence 5899999999999999999998765433 333444444455566542 257799999986544322 2568899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLK 576 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~ 576 (654)
|++++|||++ ++.+++.+. .|...+.... .+.|++||+||+|+.+.....+.+.+. ..+..
T Consensus 78 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 145 (186)
T 1mh1_A 78 DVSLICFSLV---------SPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 145 (186)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred cEEEEEEECC---------ChhhHHHHHHHHHHHHHHhC---CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHH
Confidence 9999999998 667787776 5776665432 378999999999997654322221110 00001
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+.... ....+++++||++|. ||+++|+.+.+.+
T Consensus 146 ~~~~~----------~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 146 AMAKE----------IGAVKYLECSALTQR-GLKTVFDEAIRAV 178 (186)
T ss_dssp HHHHH----------TTCSEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred HHHHh----------cCCcEEEEecCCCcc-CHHHHHHHHHHHH
Confidence 11100 122378999999999 9999999998766
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.80 E-value=4.8e-19 Score=171.45 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=104.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEE--EeC--CCceEEEEecCCCCCCCccccchhHHHHHHh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVI--TFD--DFRKMSVADLPGLIEGAHRNLGMGHQFLRHV 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v--~~~--~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~ 500 (654)
.||+++|.+|||||||++++.+... .. ++.+.++....+ .+. ....+.+|||||+.++...... ...++
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----~~~~~ 93 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----YEMIF 93 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC----HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh----ccccc
Confidence 5899999999999999998887422 22 233333333222 232 2247999999998765433200 03788
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH-------HHHHHHHHHH
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-------IYDGIRDTLH 573 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~-------v~~~~~~~~~ 573 (654)
+.||++++|||++ ++ +++.+..|..++........+.|++||+||+|+.+... +..+..+.++
T Consensus 94 ~~~~~~i~v~d~~---------~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~ 163 (196)
T 3llu_A 94 RGTGALIYVIDAQ---------DD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLA 163 (196)
T ss_dssp HTCSEEEEEEETT---------SC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECC---------Cc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHH
Confidence 9999999999998 33 34444444444443322234799999999999876432 2222222222
Q ss_pred hhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 574 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
. ... ...+++++++||++ . ||+++|+.+.+.
T Consensus 164 ~------~~~-------~~~~~~~~e~Sa~~-~-~v~~~f~~l~~~ 194 (196)
T 3llu_A 164 D------AGL-------EKLHLSFYLTSIYD-H-SIFEAFSKVVQK 194 (196)
T ss_dssp H------TTC-------TTSCEEEEEECTTS-T-HHHHHHHHHHHH
T ss_pred H------hhh-------hcCCcceEEEEech-h-hHHHHHHHHHHH
Confidence 1 000 01235789999999 8 999999999875
No 97
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=181.30 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=109.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCC--cccccceeEEEEeCCCceEEEEecCCCCCCCccccc----hhHHHHH
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYP--FTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLG----MGHQFLR 498 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~--~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~----~~~~~~~ 498 (654)
.+|+++|.+|+|||||+|+|++..+.....+ ++|..+....+.+++ ..+.+|||||+.+....... +...+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999888776666 788888888888887 58999999999876543332 3334445
Q ss_pred HhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhh
Q psy1086 499 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 499 ~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 578 (654)
+++.+|++++|+|++.+ +....+.+..+.+.+. .....|++||+||+|+.....+.+.+......+++.
T Consensus 109 ~~~~~~~~l~v~d~~~~-------~~~~~~~l~~~~~~~~----~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRY-------TEEEHKATEKILKMFG----ERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp TTTCCSEEEEEEETTCC-------SSHHHHHHHHHHHHHH----HHHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred cCCCCcEEEEEeeCCCC-------CHHHHHHHHHHHHHhh----hhccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 55678999999999743 2222333333332221 112469999999999987665554444332344555
Q ss_pred hccCCCCCCccccccccceEEEeee-----cCCCChHHHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHHH
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAK-----TNSTDVNDAKLKIRSILDLLAE--EEQEMVDRELELVKKLKSS 644 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAk-----tg~~gv~el~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 644 (654)
++.|+.+| +++++. +.. +|.+||+.+.+++.+... .+.+++....+.++++++.
T Consensus 178 ~~~~~~~~-----------~~~~~~~~~~~~~~-~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~~~~~ 238 (239)
T 3lxx_A 178 MDIFGDRY-----------CALNNKATGAEQEA-QRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQA 238 (239)
T ss_dssp HHHHSSSE-----------EECCTTCCHHHHHH-HHHHHHHHHHHHHHHCTTSCC------------------
T ss_pred HHHcCCEE-----------EEEECCCCccccHH-HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHhc
Confidence 55555444 344333 346 899999999999876322 3455666666677766554
No 98
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.2e-20 Score=197.13 Aligned_cols=123 Identities=35% Similarity=0.594 Sum_probs=110.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
++|||||+||||||||||+|++.++.+++|||||+.|..|.+.+.+ .++.++||||++++++.+.+++.+|+.+++++|
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~-~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG-AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT-EEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC-cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 3899999999999999999999999999999999999999999988 589999999999999999999999999999999
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCcc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 311 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~ 311 (654)
++++|+|++ +|+.++..+..++..+...+..+|.++++||.|..
T Consensus 152 ~il~vvD~~-----------~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 152 LLFIILDVN-----------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEEETT-----------SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred ccccccccC-----------ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999986 57788888999999988888899999999999964
No 99
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=3.6e-19 Score=165.78 Aligned_cols=157 Identities=22% Similarity=0.287 Sum_probs=106.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++.+.... ....+++|.+.....+.+++ ..+.+|||||+.+.......+...+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-ceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 58999999999999999999997754 45677888888888888877 48999999998765433333556667889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++.. .+... ..+...+.. .+.|+++|+||+|+.+.++ +..+.. .
T Consensus 81 ~~~i~v~d~~~~---------~~~~~-~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~----------~~~~~~-~-- 132 (161)
T 2dyk_A 81 EVVLFAVDGRAE---------LTQAD-YEVAEYLRR-----KGKPVILVATKVDDPKHEL----------YLGPLY-G-- 132 (161)
T ss_dssp SEEEEEEESSSC---------CCHHH-HHHHHHHHH-----HTCCEEEEEECCCSGGGGG----------GCGGGG-G--
T ss_pred CEEEEEEECCCc---------ccHhH-HHHHHHHHh-----cCCCEEEEEECcccccchH----------hHHHHH-h--
Confidence 999999999831 11111 122222221 3689999999999975421 111111 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
....+++++||++|+ ||+++|+.+.+.
T Consensus 133 --------~~~~~~~~~Sa~~~~-gv~~l~~~l~~~ 159 (161)
T 2dyk_A 133 --------LGFGDPIPTSSEHAR-GLEELLEAIWER 159 (161)
T ss_dssp --------GSSCSCEECBTTTTB-SHHHHHHHHHHH
T ss_pred --------CCCCCeEEEecccCC-ChHHHHHHHHHh
Confidence 122268999999999 999999998765
No 100
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.80 E-value=1.5e-19 Score=174.45 Aligned_cols=162 Identities=20% Similarity=0.205 Sum_probs=110.6
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+..+|+++|.+|+|||||++++++..+. ...| |.......+.+.+ ..+.+|||||+.++. ..+..+++.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~-------~~~~~~~~~ 96 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-ICFTVWDVGGQDKIR-------PLWRHYFQN 96 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEE--ETTEEEEEEEETT-EEEEEEECC-----C-------TTHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-ccCC--cCceeEEEEEECC-EEEEEEECCCCHhHH-------HHHHHHhcc
Confidence 3468999999999999999999886653 2223 4445566677765 589999999976543 234478899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ ++.+++.+..|..++... ....+.|++||+||+|+.+... .+++.+.+.. ...
T Consensus 97 ~d~iilv~D~~---------~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~--~~~--- 160 (192)
T 2b6h_A 97 TQGLIFVVDSN---------DRERVQESADELQKMLQE-DELRDAVLLVFANKQDMPNAMP-VSELTDKLGL--QHL--- 160 (192)
T ss_dssp CCEEEEEEETT---------CGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTG--GGC---
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHhcc-cccCCCeEEEEEECCCCCCCCC-HHHHHHHhCc--ccc---
Confidence 99999999998 667787777766655321 1224789999999999975421 1112211110 000
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.....+++++||++|. ||+++|+.|.+.+
T Consensus 161 --------~~~~~~~~~~SA~~g~-gi~~l~~~l~~~i 189 (192)
T 2b6h_A 161 --------RSRTWYVQATCATQGT-GLYDGLDWLSHEL 189 (192)
T ss_dssp --------SSCCEEEEECBTTTTB-THHHHHHHHHHHT
T ss_pred --------cCCceEEEECcCCCcC-CHHHHHHHHHHHH
Confidence 0123468999999999 9999999998765
No 101
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=4.3e-19 Score=169.56 Aligned_cols=162 Identities=25% Similarity=0.239 Sum_probs=113.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|++|+|||||++++.+..+.. ..| |.......+.+++ ..+.+|||||+. .+...+..+++.+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~--t~g~~~~~~~~~~-~~l~i~Dt~G~~-------~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISH-ITP--TQGFNIKSVQSQG-FKLNVWDIGGQR-------KIRPYWRSYFENT 84 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEE-EEE--ETTEEEEEEEETT-EEEEEEECSSCG-------GGHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc-ccC--cCCeEEEEEEECC-EEEEEEECCCCH-------HHHHHHHHHhCCC
Confidence 3689999999999999999999874321 122 3334455677775 589999999954 3556667889999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ ++.+++.+..|..++... ....+.|++||+||+|+.+.... +++.+.+. +. ..
T Consensus 85 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~-~~-~~---- 147 (181)
T 1fzq_A 85 DILIYVIDSA---------DRKRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAPA-SEIAEGLN-LH-TI---- 147 (181)
T ss_dssp SEEEEEEETT---------CGGGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCCH-HHHHHHTT-GG-GC----
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcCcccCCCH-HHHHHHhC-ch-hc----
Confidence 9999999998 667788777666554221 12357899999999999764322 11221111 00 00
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.....+++++||++|+ ||+++|+.+.+.+.
T Consensus 148 -------~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 148 -------RDRVWQIQSCSALTGE-GVQDGMNWVCKNVN 177 (181)
T ss_dssp -------CSSCEEEEECCTTTCT-THHHHHHHHHHTC-
T ss_pred -------cCCceEEEEccCCCCC-CHHHHHHHHHHHHH
Confidence 0123468999999999 99999999987653
No 102
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.80 E-value=2.3e-19 Score=174.50 Aligned_cols=165 Identities=19% Similarity=0.149 Sum_probs=114.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+.....++++.... ..+.+++. ..+.+|||||+.++.... ..+++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLR-------PLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTG-------GGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHH-------HHhcCCC
Confidence 58999999999999999999998765555555554443 44566652 268999999976543322 2578899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLK 576 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~ 576 (654)
|++++|||++ ++.+++.+ ..|...+.... .+.|++||+||+|+.......+.+.+. ..+..
T Consensus 98 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 98 DVILMCFSID---------SPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 9999999998 66777777 56766665432 368999999999998654322211100 00001
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+... .....++|++||++|. ||+++|+.|.+.+
T Consensus 166 ~~~~----------~~~~~~~~~~SA~~g~-gi~~l~~~i~~~~ 198 (201)
T 2gco_A 166 DMAN----------RISAFGYLECSAKTKE-GVREVFEMATRAG 198 (201)
T ss_dssp HHHH----------HTTCSEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred HHHH----------hCCCcEEEEeeCCCCC-CHHHHHHHHHHHH
Confidence 1110 0122368999999999 9999999998765
No 103
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.80 E-value=1.1e-19 Score=173.53 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=110.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|.+|+|||||+++|++..+ ....+ |.......+.+++ ..+.+|||||+.++... +..+++.+|
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~-------~~~~~~~~d 90 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEV-VHTSP--TIGSNVEEIVINN-TRFLMWDIGGQESLRSS-------WNTYYTNTE 90 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSC-EEEEC--CSSSSCEEEEETT-EEEEEEEESSSGGGTCG-------GGGGGTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CccCC--cCceeeEEEEECC-EEEEEEECCCCHhHHHH-------HHHHhccCC
Confidence 5899999999999999999999766 22222 2334445677766 58999999998654432 236789999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 584 (654)
++++|+|++ ++.+++.+..|..++... ....+.|++||+||+|+.+... .+++.+.+. +.. .
T Consensus 91 ~ii~v~D~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~-~~~-~----- 152 (181)
T 2h17_A 91 FVIVVVDST---------DRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKECMT-VAEISQFLK-LTS-I----- 152 (181)
T ss_dssp EEEEEEETT---------CTTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTT-GGG-C-----
T ss_pred EEEEEEECC---------CHHHHHHHHHHHHHHHhC-hhhCCCeEEEEEECCCcccCCC-HHHHHHHhC-ccc-c-----
Confidence 999999998 566777777766655321 1135789999999999975311 111221111 000 0
Q ss_pred CCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 585 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 585 ~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.....++|++||++|. ||+++|+.|.+.
T Consensus 153 ------~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~ 180 (181)
T 2h17_A 153 ------KDHQWHIQACCALTGE-GLCQGLEWMMSR 180 (181)
T ss_dssp ------CSSCEEEEECBTTTTB-THHHHHHHHHTC
T ss_pred ------cCCceEEEEccCCCCc-CHHHHHHHHHhh
Confidence 0123478999999999 999999998753
No 104
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=1.1e-19 Score=187.79 Aligned_cols=192 Identities=21% Similarity=0.235 Sum_probs=129.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc-ccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~-~~~~~~~~~~~~~~ 502 (654)
.+|+++|++|+|||||+|+|++..+.. +..|++|.+.....+..++ .++.+|||||+.++... ...+...+..+++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-RQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-cEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 479999999999999999999988765 4577888887776666665 48999999998765431 12255667788999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH-HHHHHHHHHHhhHhhhcc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~~ 581 (654)
||++++|+|+++. .+... ..+.+.+... ..+.|+++|+||+|+.+... +.+ ...++
T Consensus 87 ad~il~VvD~~~~---------~~~~~-~~i~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~~~----~~~~~------ 143 (301)
T 1wf3_A 87 VNAVVWVVDLRHP---------PTPED-ELVARALKPL---VGKVPILLVGNKLDAAKYPEEAMK----AYHEL------ 143 (301)
T ss_dssp CSEEEEEEETTSC---------CCHHH-HHHHHHHGGG---TTTSCEEEEEECGGGCSSHHHHHH----HHHHT------
T ss_pred CCEEEEEEECCCC---------CChHH-HHHHHHHHhh---cCCCCEEEEEECcccCCchHHHHH----HHHHh------
Confidence 9999999999832 11221 1112222211 13689999999999986543 221 11111
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHh------hHhHHHHHHHHHHHHHHHHhhhcCc
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEE------QEMVDRELELVKKLKSSLREHQGEM 652 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (654)
..+.+++++||++|. |+++||+.+.+.+.+....+ .+.+.+.. ..+..|+.+.+...+.
T Consensus 144 ----------~~~~~~~~iSA~~g~-gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~-~~e~~Re~~~~~l~~e 208 (301)
T 1wf3_A 144 ----------LPEAEPRMLSALDER-QVAELKADLLALMPEGPFFYPEDYAKSDQTFGEW-VAEILREEAMKRLWHE 208 (301)
T ss_dssp ----------STTSEEEECCTTCHH-HHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHH-HHHHHHHHHHHTCCTT
T ss_pred ----------cCcCcEEEEeCCCCC-CHHHHHHHHHHhcccCCCCCCcccccCCCCHHHH-HHHHHHHHHHHHhhcc
Confidence 123468999999999 99999999987653222111 12233332 5566677777766553
No 105
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=2e-19 Score=172.84 Aligned_cols=163 Identities=19% Similarity=0.174 Sum_probs=114.2
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+..+|+++|.+|+|||||++++++..+. ...| |.......+.+++ ..+.+|||||+.++..... .+++.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~-------~~~~~ 89 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKN-ISFEVWDLGGQTGVRPYWR-------CYFSD 89 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETT-EEEEEEEECCSSSSCCCCS-------SSSTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECC-EEEEEEECCCCHhHHHHHH-------HHhhc
Confidence 3468999999999999999999876543 3334 3445566677775 5899999999877654433 46789
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ ++.+++.+..|..++... ....+.|+++|+||+|+.+.... .++.+.+.. ...
T Consensus 90 ~d~ii~v~d~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~--~~~--- 153 (189)
T 2x77_A 90 TDAVIYVVDST---------DRDRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAASE-AEIAEQLGV--SSI--- 153 (189)
T ss_dssp CCEEEEEEETT---------CCTTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCCCH-HHHHHHTTG--GGC---
T ss_pred CCEEEEEEeCC---------CHHHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCCCH-HHHHHHhCh--hhc---
Confidence 99999999998 556777766665554321 12247899999999999764221 112211110 000
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.....+++++||++|. ||+++|+.+.+.+.
T Consensus 154 --------~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 154 --------MNRTWTIVKSSSKTGD-GLVEGMDWLVERLR 183 (189)
T ss_dssp --------CSSCEEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred --------cCCceEEEEccCCCcc-CHHHHHHHHHHHHH
Confidence 0123478999999999 99999999988775
No 106
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.80 E-value=4e-19 Score=170.08 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=115.1
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+..+|+++|.+|+|||||++++++.. .....| |.......+.+++ ..+.+|||||+.++. ..+..+++.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~--t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~-------~~~~~~~~~ 85 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISP--TLGFNIKTLEHRG-FKLNIWDVGGQKSLR-------SYWRNYFES 85 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCC--CSSEEEEEEEETT-EEEEEEEECCSHHHH-------TTGGGGCTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccc--cCccceEEEEECC-EEEEEEECCCCHhHH-------HHHHHHhcC
Confidence 44689999999999999999999876 333333 3445566677765 589999999975432 223367889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ ++.+++.+..|..++... ....+.|+++|+||+|+.+.... +++.+.+. +.. .
T Consensus 86 ~d~ii~v~d~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~-~~~-~--- 149 (186)
T 1ksh_A 86 TDGLIWVVDSA---------DRQRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGALSC-NAIQEALE-LDS-I--- 149 (186)
T ss_dssp CSEEEEEEETT---------CGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCH-HHHHHHTT-GGG-C---
T ss_pred CCEEEEEEECc---------CHHHHHHHHHHHHHHHhC-hhcCCCcEEEEEeCccCCCCCCH-HHHHHHhC-hhh-c---
Confidence 99999999998 667788777776665432 12357899999999999764322 11221111 000 0
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.....+++++||++|. ||+++|+.+.+.+.
T Consensus 150 --------~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 150 --------RSHHWRIQGCSAVTGE-DLLPGIDWLLDDIS 179 (186)
T ss_dssp --------CSSCEEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred --------cCCceEEEEeeCCCCC-CHHHHHHHHHHHHH
Confidence 0123478999999999 99999999988775
No 107
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.80 E-value=1.4e-19 Score=173.29 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=111.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....+++... ....+.+++. ..+.+|||||+.++.... ..+++.+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDNVR-------PLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEECSSCEEEEEEEEECCSGGGTTTG-------GGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCChhhhhhH-------HhhcCCC
Confidence 589999999999999999999976644444443332 3344555542 268999999976554332 2568899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHH------------HHHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY------------DGIRD 570 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~------------~~~~~ 570 (654)
|++++|||++ ++.+++.+ ..|..++.... .+.|++||+||+|+.+..... .+..+
T Consensus 80 ~~~i~v~d~~---------~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 147 (184)
T 1m7b_A 80 DAVLICFDIS---------RPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 147 (184)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred cEEEEEEECC---------CHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence 9999999998 67788887 67877775432 468999999999997532111 11111
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeee-cCCCChHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK-TNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAk-tg~~gv~el~~~i~~~~ 620 (654)
.+.. . ....++|++||+ +|. ||+++|+.+.+.+
T Consensus 148 ~~~~---~-------------~~~~~~~e~Sa~~~~~-gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 148 NMAK---Q-------------IGAATYIECSALQSEN-SVRDIFHVATLAC 181 (184)
T ss_dssp HHHH---H-------------HTCSEEEECBTTTBHH-HHHHHHHHHHHHH
T ss_pred HHHH---H-------------cCCcEEEEeeecCCCc-CHHHHHHHHHHHH
Confidence 1111 0 122478999999 688 9999999998764
No 108
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.80 E-value=2.3e-20 Score=188.60 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=115.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc--ch-hHHHHHHh-
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL--GM-GHQFLRHV- 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~--~~-~~~~~~~~- 500 (654)
.+|+++|.+|||||||+|+|++......+.|++|.+...+.+.+++ ..+.+|||||+.+...... .. ......++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT-EEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC-eEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 5899999999999999999999887778899999999999999887 4899999999987654210 11 12233455
Q ss_pred -hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhh
Q psy1086 501 -ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 501 -~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 579 (654)
+.+|++++|+|++ +. +....+..++. ..+.|+++|+||+|+...+.+.....+ +.+ .
T Consensus 81 ~~~~d~vi~VvDas---------~~---~~~~~l~~~l~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~-l~~---~- 138 (256)
T 3iby_A 81 DLEYDCIINVIDAC---------HL---ERHLYLTSQLF-----ELGKPVVVALNMMDIAEHRGISIDTEK-LES---L- 138 (256)
T ss_dssp HSCCSEEEEEEEGG---------GH---HHHHHHHHHHT-----TSCSCEEEEEECHHHHHHTTCEECHHH-HHH---H-
T ss_pred hCCCCEEEEEeeCC---------Cc---hhHHHHHHHHH-----HcCCCEEEEEEChhcCCcCCcHHHHHH-HHH---H-
Confidence 7899999999998 32 23333333332 247899999999998755432222211 211 1
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.+++++++||++|. ||++||+.+.+.
T Consensus 139 -------------lg~~vi~~SA~~g~-gi~el~~~i~~~ 164 (256)
T 3iby_A 139 -------------LGCSVIPIQAHKNI-GIPALQQSLLHC 164 (256)
T ss_dssp -------------HCSCEEECBGGGTB-SHHHHHHHHHTC
T ss_pred -------------cCCCEEEEECCCCC-CHHHHHHHHHhh
Confidence 12479999999999 999999999875
No 109
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=1.3e-18 Score=186.59 Aligned_cols=184 Identities=40% Similarity=0.712 Sum_probs=145.9
Q ss_pred CCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc
Q psy1086 410 RKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN 489 (654)
Q Consensus 410 ~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~ 489 (654)
.+++..+++|+++.+..|+++|++|+|||||++++++....+..++++|..+..+.+.+++...+.+|||||+.+..+..
T Consensus 143 ~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~ 222 (416)
T 1udx_A 143 EEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG 222 (416)
T ss_dssp CCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS
T ss_pred CCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhh
Confidence 34566789999999999999999999999999999998777788999999999998888764579999999998765555
Q ss_pred cchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHH
Q psy1086 490 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIR 569 (654)
Q Consensus 490 ~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~ 569 (654)
..+...+++++..++.+++|+|++ +.+++.+..+..++..+.....+.|.|||+||+|+... .....+.
T Consensus 223 ~~L~~~fl~~~era~~lL~vvDls----------~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~ 291 (416)
T 1udx_A 223 KGLGLEFLRHIARTRVLLYVLDAA----------DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALA 291 (416)
T ss_dssp CCSCHHHHHHHTSSSEEEEEEETT----------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhhEEeCCc----------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHH
Confidence 556666778888999999999995 24567778888877665433456899999999999765 3322222
Q ss_pred HHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 570 DTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
+.+.+ ...++|++||++++ ||++|++.|.+.+.+.
T Consensus 292 ~~l~~------------------~g~~vi~iSA~~g~-gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 292 DALAR------------------EGLAVLPVSALTGA-GLPALKEALHALVRST 326 (416)
T ss_dssp HHHHT------------------TTSCEEECCTTTCT-THHHHHHHHHHHHHTS
T ss_pred HHHHh------------------cCCeEEEEECCCcc-CHHHHHHHHHHHHHhc
Confidence 22211 12368999999999 9999999999988654
No 110
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.80 E-value=2e-19 Score=182.04 Aligned_cols=159 Identities=22% Similarity=0.325 Sum_probs=116.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh--hc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV--ER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~--~~ 502 (654)
.+|+++|++|||||||+|+|++..+.....|++|.+...+.+.+.+ ..+.+|||||+.+....... ......++ ..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~~~ 83 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-YTINLIDLPGTYSLGYSSID-EKIARDYLLKGD 83 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCCSSCCSSSHH-HHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC-eEEEEEECCCcCccCCCCHH-HHHHHHHHhhcC
Confidence 5899999999999999999999887778889999999888888876 48999999999876543211 11122344 58
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++. . +....|..++. ..+.|+++|+||+|+...+.+..+.. .+.. .
T Consensus 84 ~d~ii~V~D~t~---------~---~~~~~~~~~l~-----~~~~pvilv~NK~Dl~~~~~i~~~~~-~l~~---~---- 138 (258)
T 3a1s_A 84 ADLVILVADSVN---------P---EQSLYLLLEIL-----EMEKKVILAMTAIDEAKKTGMKIDRY-ELQK---H---- 138 (258)
T ss_dssp CSEEEEEEETTS---------C---HHHHHHHHHHH-----TTTCCEEEEEECHHHHHHTTCCBCHH-HHHH---H----
T ss_pred CCEEEEEeCCCc---------h---hhHHHHHHHHH-----hcCCCEEEEEECcCCCCccchHHHHH-HHHH---H----
Confidence 999999999983 2 22333444443 23799999999999865443322111 1221 1
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.++++|++||++|. ||++||+.+.+.++
T Consensus 139 ----------lg~~vi~~SA~~g~-gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 139 ----------LGIPVVFTSSVTGE-GLEELKEKIVEYAQ 166 (258)
T ss_dssp ----------HCSCEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred ----------cCCCEEEEEeeCCc-CHHHHHHHHHHHhh
Confidence 12479999999999 99999999998765
No 111
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.80 E-value=6.6e-19 Score=169.19 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=110.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|..|+|||||+++|++..+.. ...+++.......+.+++. ..+.+|||||..++. ..+..+++.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCcc-ccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHhhCcC
Confidence 589999999999999999999875533 3334444444556666653 258999999965433 3344778999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ +..+++.+..|..++.... ...+.|++||+||+|+.......++..+ +.+ .
T Consensus 94 d~~i~v~d~~---------~~~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~---~----- 154 (190)
T 3con_A 94 EGFLCVFAIN---------NSKSFADINLYREQIKRVK-DSDDVPMVLVGNKCDLPTRTVDTKQAHE-LAK---S----- 154 (190)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHHHHHHHHHH-TCSCCCEEEEEECTTCSCCCSCHHHHHH-HHH---H-----
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCcCCcccCCHHHHHH-HHH---H-----
Confidence 9999999998 6678888888877765443 2246899999999998752211222221 211 1
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..++++++||++|. |++++|+.|.+.+.+
T Consensus 155 ---------~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 155 ---------YGIPFIETSAKTRQ-GVEDAFYTLVREIRQ 183 (190)
T ss_dssp ---------HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred ---------cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence 12368999999999 999999999987754
No 112
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=2.8e-19 Score=174.67 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=111.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..+|+++|.+|+|||||++++++..+.....++++... ...+.+++. ..+.+|||||+.++..... .+++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~~ 96 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRP-------LSYPD 96 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE-EEEEEETTEEEEEEEEECTTCTTCTTTGG-------GGCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE-EEEEEECCEEEEEEEEECCCcHHHHHHHH-------hhcCC
Confidence 35899999999999999999999776544444443333 344566552 2689999999876543332 56889
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHH------Hhh
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTL------HNL 575 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~------~~~ 575 (654)
+|++++|||++ ++.+++.+ ..|...+.... .+.|++||+||+|+.......+.+.+.. .+.
T Consensus 97 ~d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 97 TDVILMCFSVD---------SPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp CCEEEEEEETT---------CHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred CCEEEEEEECC---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHH
Confidence 99999999998 66777777 56766665432 3689999999999976543322221100 000
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.+... .....+++++||++|. ||+++|+.|.+.+-
T Consensus 165 ~~~~~----------~~~~~~~~~~SA~~g~-gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 165 RAMAV----------RIQAYDYLECSAKTKE-GVREVFETATRAAL 199 (207)
T ss_dssp HHHHH----------HTTCSEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred HHHHH----------hcCCCEEEEeeCCCCC-CHHHHHHHHHHHHH
Confidence 00000 0122368999999999 99999999987653
No 113
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.79 E-value=2.1e-19 Score=175.55 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=112.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....+++... ....+.+++. ..+.+|||||+.++.... ..+++.|
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDNVR-------PLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEESSSSEEEEEEEEECCSGGGTTTG-------GGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee-EEEEEEECCEEEEEEEEeCCCcHhhhHHH-------HhhccCC
Confidence 589999999999999999999976654444444333 3445555542 368999999976554332 2568899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHH-HHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHH------------HHHHH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY------------DGIRD 570 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~------------~~~~~ 570 (654)
|++++|||++ ++.+++.+ ..|..++.... .+.|++||+||+|+.+..... .+..+
T Consensus 101 d~~ilv~D~~---------~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 168 (205)
T 1gwn_A 101 DAVLICFDIS---------RPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 168 (205)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHH
Confidence 9999999998 67788887 67877775432 468999999999997532111 11111
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeee-cCCCChHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK-TNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAk-tg~~gv~el~~~i~~~~ 620 (654)
.++. . ....++|++||+ +|. ||+++|+.+.+.+
T Consensus 169 ~~~~---~-------------~~~~~~~e~SAk~~~~-gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 169 NMAK---Q-------------IGAATYIECSALQSEN-SVRDIFHVATLAC 202 (205)
T ss_dssp HHHH---H-------------HTCSEEEECCTTTCHH-HHHHHHHHHHHHH
T ss_pred HHHH---H-------------cCCCEEEEeeeccCCc-CHHHHHHHHHHHH
Confidence 1111 0 122468999999 588 9999999998764
No 114
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=1.6e-19 Score=172.13 Aligned_cols=163 Identities=20% Similarity=0.211 Sum_probs=110.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
..+|+++|.+|+|||||++++++..+ ....+ |.......+.+++ ..+.+|||||+.++.... ..+++.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~--t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 86 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV-VTTKP--TIGFNVETLSYKN-LKLNVWDLGGQTSIRPYW-------RCYYADT 86 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE-EEECS--STTCCEEEEEETT-EEEEEEEEC----CCTTG-------GGTTTTE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc-CccCC--cCccceEEEEECC-EEEEEEECCCCHhHHHHH-------HHHhccC
Confidence 36899999999999999999997655 22233 3335556677766 589999999987654332 2568899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++ +..+++.+..|..++... ....+.|+++|+||+|+.+... .+++.+.+. .. .
T Consensus 87 d~ii~v~d~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~----~~-~-- 148 (183)
T 1moz_A 87 AAVIFVVDST---------DKDRMSTASKELHLMLQE-EELQDAALLVFANKQDQPGALS-ASEVSKELN----LV-E-- 148 (183)
T ss_dssp EEEEEEEETT---------CTTTHHHHHHHHHHHTTS-STTSSCEEEEEEECTTSTTCCC-HHHHHHHTT----TT-T--
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHcC-hhhCCCeEEEEEECCCCCCCCC-HHHHHHHhC----cc-c--
Confidence 9999999998 556777777666554321 1135789999999999975421 111221111 00 0
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
. .....+++++||++|. ||+++|+.+.+.+.+
T Consensus 149 --~----~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 149 --L----KDRSWSIVASSAIKGE-GITEGLDWLIDVIKE 180 (183)
T ss_dssp --C----CSSCEEEEEEBGGGTB-THHHHHHHHHHHHHH
T ss_pred --c----cCCceEEEEccCCCCc-CHHHHHHHHHHHHHh
Confidence 0 0123478999999999 999999999887753
No 115
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.79 E-value=6.3e-19 Score=169.90 Aligned_cols=166 Identities=17% Similarity=0.099 Sum_probs=103.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccC----------CCcccccceeEEE-EeCCC-ceEEEEecCCCCCCCccccch
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIAS----------YPFTTIKPNVGVI-TFDDF-RKMSVADLPGLIEGAHRNLGM 492 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~----------~~~~t~~~~~~~v-~~~~~-~~~~i~DTpG~~~~~~~~~~~ 492 (654)
.||+++|.+|+|||||++.+.+....... .+++..+.....+ .+++. ..+.+|||||+.+ +
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~ 87 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF-------Y 87 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS-------C
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH-------H
Confidence 58999999999999999877664322211 1111112221112 22221 2689999999654 4
Q ss_pred hHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHH
Q psy1086 493 GHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTL 572 (654)
Q Consensus 493 ~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~ 572 (654)
...+..+++.+|++++|||+++. ...++..+++.+..|..++ .....+.|++||+||+|+.+.. ..++..+ +
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~---~~~~~~~s~~~l~~~l~~~---~~~~~~~piilv~NK~Dl~~~~-~~~~~~~-~ 159 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPN---RLRANAESMRNMRENLAEY---GLTLDDVPIVIQVNKRDLPDAL-PVEMVRA-V 159 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGG---GHHHHHHHHHHHHHHHHHT---TCCTTSSCEEEEEECTTSTTCC-CHHHHHH-H
T ss_pred HHHHHHHHhcCCEEEEEEECCcc---hhhHhHHHHHHHHHHHHhh---ccccCCCCEEEEEEchhccccc-CHHHHHH-H
Confidence 44556789999999999999821 1111233444444444333 2234578999999999997541 1111111 1
Q ss_pred HhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 573 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.. . ....+++++||++|. ||+++|+.+.+.+.+
T Consensus 160 ~~------~----------~~~~~~~~~Sa~~~~-gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 160 VD------P----------EGKFPVLEAVATEGK-GVFETLKEVSRLVLA 192 (198)
T ss_dssp HC------T----------TCCSCEEECBGGGTB-THHHHHHHHHHHHHH
T ss_pred HH------h----------cCCceEEEEecCCCc-CHHHHHHHHHHHHHH
Confidence 11 1 111268999999999 999999999887754
No 116
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=174.19 Aligned_cols=166 Identities=15% Similarity=0.185 Sum_probs=102.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++|++..+.....+ ++.+.....+.+++.. .+.+|||||+.++. ..+..+++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTP-TVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-------RLRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-------CC-CCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-ccceeEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHHhccC
Confidence 5899999999999999999998765433333 3344445556666532 68999999975543 3334678999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHH------HHHhhH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRD------TLHNLK 576 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~------~~~~~~ 576 (654)
|++++|||++ ++.+++.+. .|..++.... .+.|++||+||+|+.......+.+.. ...+..
T Consensus 107 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 174 (214)
T 2j1l_A 107 SVLLLCFDVT---------SPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQ 174 (214)
T ss_dssp EEEEEEEETT---------CHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHH
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHH
Confidence 9999999998 677888775 6777665432 46899999999999876433222110 000011
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+.... ....+++++||++|. ||+++|+.|.+.+.
T Consensus 175 ~~~~~----------~~~~~~~~~SA~~g~-gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 175 EMARS----------VGAVAYLECSARLHD-NVHAVFQEAAEVAL 208 (214)
T ss_dssp HHHHH----------TTCSEEEECBTTTTB-SHHHHHHHHHHHHH
T ss_pred HHHHh----------cCCCEEEEecCCCCC-CHHHHHHHHHHHHH
Confidence 11111 122368999999999 99999999988764
No 117
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.79 E-value=2.3e-19 Score=182.66 Aligned_cols=158 Identities=22% Similarity=0.331 Sum_probs=114.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh--c
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE--R 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~--~ 502 (654)
.+|+++|++|||||||+|+|++......+.|++|.+...+.+.+ + ..+.+|||||+.+...... -...+..+++ .
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~-~~l~l~DtpG~~~~~~~~~-~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N-KDLEIQDLPGIYSMSPYSP-EAKVARDYLLSQR 80 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C-TTEEEEECCCCSCSSCSSH-HHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C-CeEEEEECCCcCccCCCCh-HHHHHHHHHhcCC
Confidence 58999999999999999999998877888899999887776655 4 4799999999877643221 1122345555 6
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|+|++ + .+....|..++.. .+.|+++|+||+|+...+.+..... .+.+ .
T Consensus 81 ~d~vi~V~D~t---------~---~e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~-~l~~---~---- 135 (272)
T 3b1v_A 81 ADSILNVVDAT---------N---LERNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVD-KLSY---H---- 135 (272)
T ss_dssp CSEEEEEEEGG---------G---HHHHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHH-HHHH---H----
T ss_pred CCEEEEEecCC---------c---hHhHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHH-HHHH---H----
Confidence 99999999998 2 2333445554432 4789999999999865433221111 1221 1
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.+++++++||++|+ ||++||+.+.+.+.
T Consensus 136 ----------lg~~vi~~SA~~g~-gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 136 ----------LGVPVVATSALKQT-GVDQVVKKAAHTTT 163 (272)
T ss_dssp ----------HTSCEEECBTTTTB-SHHHHHHHHHHSCT
T ss_pred ----------cCCCEEEEEccCCC-CHHHHHHHHHHHHh
Confidence 12479999999999 99999999988653
No 118
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=2e-18 Score=170.38 Aligned_cols=175 Identities=20% Similarity=0.126 Sum_probs=114.9
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCC--CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc---cchhHHHHH
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARP--KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN---LGMGHQFLR 498 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~--~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~---~~~~~~~~~ 498 (654)
..+|+++|.+|+|||||+++|++... .....+++|.+.....+...+...+.+|||||+....... +.+...+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 46899999999999999999999863 4456777887776555542333589999999976543222 122333445
Q ss_pred Hhhc---ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhh
Q psy1086 499 HVER---TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 575 (654)
Q Consensus 499 ~~~~---a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~ 575 (654)
+++. +|++++|+|+++. .. +....+..++. ..+.|+++|+||+|+....++.....+....+
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~---------~~-~~~~~~~~~l~-----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l 173 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRP---------LT-ELDRRMIEWFA-----PTGKPIHSLLTKCDKLTRQESINALRATQKSL 173 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSC---------CC-HHHHHHHHHHG-----GGCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HHhcCcCcCEEEEEEeCCCC---------CC-HHHHHHHHHHH-----hcCCCEEEEEeccccCChhhHHHHHHHHHHHH
Confidence 5554 8889999999831 11 11222333332 14689999999999987665433333222222
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
...... ......++|++||++|+ ||++||+.|.+.+..
T Consensus 174 ~~~~~~--------~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 174 DAYRDA--------GYAGKLTVQLFSALKRT-GLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHH--------TCCSCEEEEEEBTTTTB-SHHHHHHHHHHHHC-
T ss_pred Hhhhhc--------ccCCCCeEEEeecCCCc-CHHHHHHHHHHhcCc
Confidence 211000 00134579999999999 999999999988754
No 119
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=1.7e-18 Score=179.89 Aligned_cols=175 Identities=15% Similarity=0.096 Sum_probs=121.2
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcC-CCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRAR-PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
..||+++|.+|||||||++++++.. .+....+++|.+.....+.+++...+.+|||||+.++.. ..+...+..+++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME--NYFTKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH--HHHTTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh--hhhhhHHHHHhcc
Confidence 3589999999999999999998874 334457788888888888876556899999999754310 0002344577899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|..++........+.|++||+||+|+.+.............+..+....+
T Consensus 81 ad~vi~V~D~t---------~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 81 VQVLIHVFDVE---------STEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF 151 (307)
T ss_dssp CSEEEEEEETT---------CSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECC---------ChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence 99999999998 678888888887776554323357999999999999873221100000011111222111
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
+ ....+++++||++ . ++.++|..+.+.
T Consensus 152 g--------~~~~~~~~tSa~~-~-~i~e~~~~iv~~ 178 (307)
T 3r7w_A 152 G--------FPNLIGFPTSIWD-E-SLYKAWSQIVCS 178 (307)
T ss_dssp T--------CCSCEEEECCTTS-S-HHHHHHHHHHHT
T ss_pred C--------CCCeEEEEeeecC-C-hHHHHHHHHHHH
Confidence 1 0125799999999 6 899999988754
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.78 E-value=5e-18 Score=163.59 Aligned_cols=164 Identities=19% Similarity=0.273 Sum_probs=104.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc--cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc---ccchhHHHHH
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI--ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR---NLGMGHQFLR 498 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~--~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~---~~~~~~~~~~ 498 (654)
..+|+++|.+|+|||||+++|++..+.. ...+++|..... ..+++ ++.+|||||+...... .+.+...+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YIIND--ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE--EEETT--TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEE--EEECC--cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4689999999999999999999876332 344555554433 33443 6999999997654322 2223444556
Q ss_pred Hhhcc---cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhh
Q psy1086 499 HVERT---KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 575 (654)
Q Consensus 499 ~~~~a---~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~ 575 (654)
+++.+ |++++|+|+++ ..++.... +..++. ..+.|+++|+||+|+.+.+++.....+ +
T Consensus 99 ~~~~~~~~~~~i~v~d~~~---------~~~~~~~~-~~~~~~-----~~~~p~i~v~nK~Dl~~~~~~~~~~~~----~ 159 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRH---------APSNDDVQ-MYEFLK-----YYGIPVIVIATKADKIPKGKWDKHAKV----V 159 (195)
T ss_dssp HHHHCTTEEEEEEEEETTS---------CCCHHHHH-HHHHHH-----HTTCCEEEEEECGGGSCGGGHHHHHHH----H
T ss_pred HHhhhhcCCEEEEEEECCC---------CCCHHHHH-HHHHHH-----HcCCCEEEEEECcccCChHHHHHHHHH----H
Confidence 66666 99999999983 33333322 223332 146899999999999876654432222 2
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.+.+.. ....++|++||++|. ||+++|+.|.+.++
T Consensus 160 ~~~~~~----------~~~~~~~~~Sa~~~~-gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 160 RQTLNI----------DPEDELILFSSETKK-GKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHTC----------CTTSEEEECCTTTCT-THHHHHHHHHHHHT
T ss_pred HHHHcc----------cCCCceEEEEccCCC-CHHHHHHHHHHHhc
Confidence 211110 123578999999999 99999999987763
No 121
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.77 E-value=4.1e-19 Score=175.27 Aligned_cols=159 Identities=21% Similarity=0.115 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||+++++...+.....++...+.....+.+++. ..+.+|||||+.++.... ..+++.+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 88 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR-------DGYYIQA 88 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC-------HHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH-------HHHHhcC
Confidence 58999999999999999997665443322333333333344444432 378999999976554333 3678999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|||++ ++.+++.+..|..++.... .+.|++||+||+|+.+..... +.. .+..
T Consensus 89 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~-~~~-~~~~--------- 145 (221)
T 3gj0_A 89 QCAIIMFDVT---------SRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKA-KSI-VFHR--------- 145 (221)
T ss_dssp CEEEEEEETT---------CHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSCG-GGC-CHHH---------
T ss_pred CEEEEEEECC---------CHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCccccccccH-HHH-HHHH---------
Confidence 9999999998 6778888888888776542 378999999999997543211 111 0111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+.++|++||++|. ||+++|+.|.+.+..
T Consensus 146 --------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 146 --------KKNLQYYDISAKSNY-NFEKPFLWLARKLIG 175 (221)
T ss_dssp --------HHTCEEEECBGGGTB-TTTHHHHHHHHHHHT
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence 123468999999999 999999999987743
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=3.7e-19 Score=181.77 Aligned_cols=159 Identities=24% Similarity=0.385 Sum_probs=115.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc--chhHHH-HHH--
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL--GMGHQF-LRH-- 499 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~--~~~~~~-~~~-- 499 (654)
.+|+++|.+|+|||||+|+|++......+.+++|.+...+.+.+++. .+.+|||||+.+...... .+...+ ..+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH-QVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC-EEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC-ceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 58999999999999999999998877778999999999999988774 799999999987653221 122222 222
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhh
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 579 (654)
.+.+|++++|+|++ + .+....|..++.. .+.|+|+|+||+|+.+.+.+..... .+.+ .
T Consensus 83 ~~~~d~ii~VvD~~---------~---~~~~~~~~~~l~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~-~l~~---~- 140 (274)
T 3i8s_A 83 SGDADLLINVVDAS---------N---LERNLYLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIEID-ALSA---R- 140 (274)
T ss_dssp HTCCSEEEEEEEGG---------G---HHHHHHHHHHHHH-----HTCCEEEEEECHHHHHHTTEEECHH-HHHH---H-
T ss_pred hcCCCEEEEEecCC---------C---hHHHHHHHHHHHh-----cCCCEEEEEECccchhhhhHHHHHH-HHHH---h-
Confidence 36999999999998 2 2333344444432 2689999999999865433211111 1211 1
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+++++++||++|. ||++||+.|.+.+
T Consensus 141 -------------lg~~~i~~SA~~g~-gi~el~~~i~~~~ 167 (274)
T 3i8s_A 141 -------------LGCPVIPLVSTRGR-GIEALKLAIDRYK 167 (274)
T ss_dssp -------------HTSCEEECCCGGGH-HHHHHHHHHHTCC
T ss_pred -------------cCCCEEEEEcCCCC-CHHHHHHHHHHHH
Confidence 12479999999999 9999999998754
No 123
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=7.8e-19 Score=168.16 Aligned_cols=168 Identities=16% Similarity=0.172 Sum_probs=106.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcC-CCcc-CCCcccccceeEEEEeC----CCceEEEEecCCCCCCCccccchhHHHHH
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRAR-PKIA-SYPFTTIKPNVGVITFD----DFRKMSVADLPGLIEGAHRNLGMGHQFLR 498 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~-~~~~-~~~~~t~~~~~~~v~~~----~~~~~~i~DTpG~~~~~~~~~~~~~~~~~ 498 (654)
.+|+++|++|||||||++++++.. .+.. ..++++.++....+.+. ....+.+|||||+.++... ...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST-------HPH 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT-------SHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh-------hHH
Confidence 489999999999999999999853 2222 34444455444433321 2237899999997554322 236
Q ss_pred HhhcccEEEEEEeCCCcccCCCCCcc-chHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHh
Q psy1086 499 HVERTKLIAMIVDVNGFQLGLKHPKR-SCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKD 577 (654)
Q Consensus 499 ~~~~a~~~ilV~D~~~~~~~~~~~~~-~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~ 577 (654)
+++.++++++|+|++ +. .+++.+..|..++... ..+.|++||+||+|+.+.+.+.....+...++
T Consensus 76 ~~~~~~~~i~v~d~~---------~~~~s~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-- 141 (184)
T 2zej_A 76 FMTQRALYLAVYDLS---------KGQAEVDAMKPWLFNIKAR---ASSSPVILVGTHLDVSDEKQRKACMSKITKEL-- 141 (184)
T ss_dssp HHHHSEEEEEEEEGG---------GCHHHHHTHHHHHHHHHHH---CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHT--
T ss_pred HccCCcEEEEEEeCC---------cchhHHHHHHHHHHHHHhh---CCCCcEEEEEECCCcccchhhHHHHHHHHHHH--
Confidence 788999999999998 44 4677777777766433 13689999999999987655432221111111
Q ss_pred hhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...++ + ....+++++||++|..++++|++.|.+.+.
T Consensus 142 -~~~~~--~-----~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 142 -LNKRG--F-----PAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp -TTCTT--S-----CEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred -HHhcC--C-----cchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 11110 0 111248999999993389999999887664
No 124
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=8.5e-19 Score=177.74 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=115.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccC-CCc-ccccceeEEEEeCCCceEEEEecCCCCCCCccccch----hHHHHH
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIAS-YPF-TTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGM----GHQFLR 498 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~-~~~-~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~----~~~~~~ 498 (654)
.+|+++|++|+|||||+++|++...+... .+. +|.+.....+.+++ ..+.+|||||+.+.......+ ...+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-REIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-EEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-CEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999998766644 343 77888888888877 589999999998765433322 333445
Q ss_pred HhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEe-CCCccChHHHHHHHHHHH-HhhH
Q psy1086 499 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVN-KMDVEGAQEIYDGIRDTL-HNLK 576 (654)
Q Consensus 499 ~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~N-K~Dl~~~~~v~~~~~~~~-~~~~ 576 (654)
+++.+|++++|+|++.+. ...+.+ ..++..........|.|+|+| |+|+.+. .+...+.+.. .+++
T Consensus 102 ~~~~~d~il~V~d~~~~~--------~~~~~~---~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGRYT--------SQDQQA---AQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALS 169 (260)
T ss_dssp HTTCCSEEEEEEETTCCC--------HHHHHH---HHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHH
T ss_pred cCCCCcEEEEEEeCCCCC--------HHHHHH---HHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHH
Confidence 788999999999998321 111112 222222211112457777777 9999743 2222221000 1122
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
+.+..|..++ ..+.+ +++||++|. ||+++|+.|.+.+...
T Consensus 170 ~~~~~~~~~~-----~~~~~-~~~SA~~~~-gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 170 KLVAACGGRI-----CAFNN-RAEGSNQDD-QVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHHTTTCE-----EECCT-TCCHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeE-----EEecC-cccccccHH-HHHHHHHHHHHHHHhC
Confidence 2233333222 01223 899999999 9999999999988763
No 125
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.77 E-value=6.1e-18 Score=164.09 Aligned_cols=163 Identities=19% Similarity=0.126 Sum_probs=119.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|++|+|||||++++++..+...+.++++.++..+.+.+++.. .+.+|||||..++.... ..+++.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~-------~~~~~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT-------SAYYRGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC-------HHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh-------HHHHhcC
Confidence 589999999999999999999987766667777778888888888732 57789999976544322 2567899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|+|++ +..+++.+..|..++... ...+.|+++|+||+|+.+.+.+.......+..
T Consensus 79 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~--------- 138 (199)
T 2f9l_A 79 VGALLVYDIA---------KHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE--------- 138 (199)
T ss_dssp SEEEEEEETT---------CHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccccccCcCHHHHHHHHH---------
Confidence 9999999998 566777777777665432 22468999999999997544332222222221
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
...+.++++||+++. |++++|+.+.+.+.+.
T Consensus 139 --------~~~~~~~d~Sal~~~-~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 139 --------KNNLSFIETSALDST-NVEEAFKNILTEIYRI 169 (199)
T ss_dssp --------HTTCEEEECCTTTCT-THHHHHHHHHHHHHHH
T ss_pred --------HcCCeEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 112358899999999 9999999999887543
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.77 E-value=6.1e-19 Score=180.02 Aligned_cols=160 Identities=26% Similarity=0.403 Sum_probs=116.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh--hc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV--ER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~--~~ 502 (654)
.+|+++|++|+|||||+++|++..+.....+++|.+.....+.+++ ..+.+|||||+.+....... ...+..++ ..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~ 81 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLTAHSID-ELIARNFILDGN 81 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT-EEEEEEECCCCSCCCSSCHH-HHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC-ceEEEEeCCCccccccCCHH-HHHHHHhhhccC
Confidence 5899999999999999999999877667889999999999999887 47999999999876543221 11233444 68
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCC-CCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE-KPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~-~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
+|++++|+|++. .+....|..++.. .+ .|+++|+||+|+.+.+.+..... .+. +.
T Consensus 82 ~d~vi~v~D~~~------------~~~~~~~~~~~~~-----~~~~p~ilv~NK~Dl~~~~~~~~~~~-~l~---~~--- 137 (271)
T 3k53_A 82 ADVIVDIVDSTC------------LMRNLFLTLELFE-----MEVKNIILVLNKFDLLKKKGAKIDIK-KMR---KE--- 137 (271)
T ss_dssp CSEEEEEEEGGG------------HHHHHHHHHHHHH-----TTCCSEEEEEECHHHHHHHTCCCCHH-HHH---HH---
T ss_pred CcEEEEEecCCc------------chhhHHHHHHHHh-----cCCCCEEEEEEChhcCcccccHHHHH-HHH---HH---
Confidence 999999999983 1222233333321 24 89999999999875443322211 121 11
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+++++++||++|. |++++|+.+.+.+..
T Consensus 138 -----------lg~~~~~~Sa~~g~-gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 138 -----------LGVPVIPTNAKKGE-GVEELKRMIALMAEG 166 (271)
T ss_dssp -----------HSSCEEECBGGGTB-THHHHHHHHHHHHHT
T ss_pred -----------cCCcEEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 12479999999999 999999999988753
No 127
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=4.4e-18 Score=185.64 Aligned_cols=161 Identities=20% Similarity=0.258 Sum_probs=107.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc--cccchhHHHHHHhh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH--RNLGMGHQFLRHVE 501 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~--~~~~~~~~~~~~~~ 501 (654)
++|+++|.+|||||||+|+|++.... ..+.|++|++...+.+.+++ ..+.+|||||+..... ....+..++..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-eEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 57999999999999999999998764 46789999999999999987 5899999999876432 23346677889999
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.||++++|+|++.. .+... ..+..++.. .++|+++|+||+|+.+. ...+. ..++..
T Consensus 81 ~ad~il~V~D~~~~---------~~~~d-~~i~~~l~~-----~~~p~ilv~NK~D~~~~--~~~~~---~~~~~~---- 136 (439)
T 1mky_A 81 EADLVLFVVDGKRG---------ITKED-ESLADFLRK-----STVDTILVANKAENLRE--FEREV---KPELYS---- 136 (439)
T ss_dssp TCSEEEEEEETTTC---------CCHHH-HHHHHHHHH-----HTCCEEEEEESCCSHHH--HHHHT---HHHHGG----
T ss_pred hCCEEEEEEECCCC---------CCHHH-HHHHHHHHH-----cCCCEEEEEeCCCCccc--cHHHH---HHHHHh----
Confidence 99999999999831 11111 112222221 36899999999998532 11111 011111
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+.+++++||++|. ||++||+.+.+.+.
T Consensus 137 ----------lg~~~~~~iSA~~g~-gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 137 ----------LGFGEPIPVSAEHNI-NLDTMLETIIKKLE 165 (439)
T ss_dssp ----------GSSCSCEECBTTTTB-SHHHHHHHHHHHHH
T ss_pred ----------cCCCCEEEEeccCCC-CHHHHHHHHHHhcc
Confidence 112257999999999 99999999988774
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.77 E-value=2.9e-18 Score=172.45 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=114.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCC--cccccceeEEEEeCCCceEEEEecCCCCCCCccc-cchhHHHHHHh-
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYP--FTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN-LGMGHQFLRHV- 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~--~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~-~~~~~~~~~~~- 500 (654)
.+|+++|.+|+|||||+|++++...+....+ ++|..+....+.+++ ..+.+|||||+.+..... ..+...+.+++
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~ 100 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-CHVEVVDTPDIFSSQVSKTDPGCEERGHCYL 100 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-EEEEEEECCSCSSTTHHHHSTTSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-cEEEEEECCCCCCCCCCcHHHHHHHHHHHHH
Confidence 5899999999999999999999988776543 478888888888886 589999999997655433 44444554555
Q ss_pred ---hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHH-hhcccCCCCEEEEEeCCCccChHHHHHHHHHH-HHhh
Q psy1086 501 ---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELEL-YKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT-LHNL 575 (654)
Q Consensus 501 ---~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~-~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~-~~~~ 575 (654)
+.+|++++|+|++.+. . +. ..+.+++.. ......+.|+|||.||+|+.+. .+.+.+.+. ...+
T Consensus 101 ~~~~~~d~il~V~d~~~~~-------~---~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l 168 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGRFT-------A---QD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRAL 168 (247)
T ss_dssp HHTTCCSEEEEEEETTBCC-------H---HH-HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHH
T ss_pred hcCCCCCEEEEEEeCCCCC-------H---HH-HHHHHHHHHHhChhhhccEEEEEEchHhcCCC-CHHHHHhhcccHHH
Confidence 8999999999997321 1 11 111222221 1122236899999999999653 222222210 0234
Q ss_pred HhhhccCCCCCCccccccccceEEEeee---cCCCChHHHHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAK---TNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAk---tg~~gv~el~~~i~~~~~~ 622 (654)
++.++.|+.+| .+|..+|. .+. ||++|++.|.+++.+
T Consensus 169 ~~l~~~~g~~~---------~~~~~~~~~~~~~~-~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 169 RELVAECGGRV---------CAFDNRATGREQEA-QVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHTTTCE---------EECCTTCCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeE---------EEEeCCCCccccHH-HHHHHHHHHHHHHHH
Confidence 55566666655 23444443 367 999999999999876
No 129
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.76 E-value=7.5e-19 Score=191.50 Aligned_cols=187 Identities=20% Similarity=0.266 Sum_probs=124.1
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchh-HHHHHHh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLRHV 500 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~-~~~~~~~ 500 (654)
.+.+|+++|++|+|||||+|+|++..+. ....+++|.+.....+.+++ ..+.+|||||+.++....+.+. ..+..++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-EEEEECC--------------------CCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3468999999999999999999997654 56689999999888888887 5899999999876543333221 3344677
Q ss_pred hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhc
Q psy1086 501 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 580 (654)
Q Consensus 501 ~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 580 (654)
+.||++++|+|+++ ..+.+. ..|...+ .+.|+++|+||+|+.....+. .+.
T Consensus 302 ~~aD~vl~VvD~s~---------~~~~~~-~~i~~~l-------~~~piivV~NK~Dl~~~~~~~--------~~~---- 352 (462)
T 3geh_A 302 NTADLVLLTIDAAT---------GWTTGD-QEIYEQV-------KHRPLILVMNKIDLVEKQLIT--------SLE---- 352 (462)
T ss_dssp CSCSEEEEEEETTT---------CSCHHH-HHHHHHH-------TTSCEEEEEECTTSSCGGGST--------TCC----
T ss_pred hcCCEEEEEeccCC---------CCCHHH-HHHHHhc-------cCCcEEEEEECCCCCcchhhH--------HHH----
Confidence 89999999999983 222222 2333332 237999999999998654321 110
Q ss_pred cCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHH----HhhHhHHHHHHHHHHHHHHHHhhh
Q psy1086 581 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAE----EEQEMVDRELELVKKLKSSLREHQ 649 (654)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 649 (654)
. +....+++++||++|. ||++||+.|.+.+..... ...-...|+.+..++..++|.++.
T Consensus 353 ~---------~~~~~~~i~iSAktg~-Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~ 415 (462)
T 3geh_A 353 Y---------PENITQIVHTAAAQKQ-GIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQ 415 (462)
T ss_dssp C---------CTTCCCEEEEBTTTTB-SHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred H---------hccCCcEEEEECCCCC-CHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHH
Confidence 0 0133578999999999 999999999998864331 111245788888888888876553
No 130
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=1.8e-17 Score=159.25 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=104.5
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc---ccchhHHHHHH
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR---NLGMGHQFLRH 499 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~---~~~~~~~~~~~ 499 (654)
..+|+++|.+|+|||||++++++..... ...+++|..... ...+. ++.+|||||+...... ...+...+..+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF--YLVNS--KYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE--EEETT--TEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE--EEECC--cEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 3689999999999999999999986432 334555544432 22333 6899999997543321 11233334455
Q ss_pred hhcc---cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhH
Q psy1086 500 VERT---KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLK 576 (654)
Q Consensus 500 ~~~a---~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~ 576 (654)
++.+ +++++|+|++.. .......+ ..++.. .+.|+++|+||+|+.+..+...... +++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~-------~~~~~~~~---~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~----~~~ 159 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIP-------PQDSDLMM---VEWMKS-----LNIPFTIVLTKMDKVKMSERAKKLE----EHR 159 (195)
T ss_dssp HHHCTTEEEEEEEEETTSC-------CCHHHHHH---HHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHH----HHH
T ss_pred HhcCcCceEEEEEecCCCC-------CCHHHHHH---HHHHHH-----cCCCEEEEEEChhcCChHHHHHHHH----HHH
Confidence 5554 999999998732 11222222 233321 2689999999999976543322221 111
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+.... ....+++++||++|+ ||+++|+.|.+.+.
T Consensus 160 ~~~~~----------~~~~~~~~~Sa~~~~-gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 160 KVFSK----------YGEYTIIPTSSVTGE-GISELLDLISTLLK 193 (195)
T ss_dssp HHHHS----------SCCSCEEECCTTTCT-THHHHHHHHHHHHC
T ss_pred HHHhh----------cCCCceEEEecCCCC-CHHHHHHHHHHHhh
Confidence 21111 233479999999999 99999999998764
No 131
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.76 E-value=9.7e-18 Score=161.69 Aligned_cols=160 Identities=20% Similarity=0.130 Sum_probs=119.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|++|||||||++++++..+...+.++++.++..+.+.+++.. .+.+|||||+.++.... ..+++.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~-------~~~~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT-------SAYYRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC-------HHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh-------HHHhhcC
Confidence 589999999999999999999988777777888888888889888632 45679999987654332 2567889
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++++|+|++ +..+++.+..|..++... ...+.|+++|+||+|+.+.+.+.......+..
T Consensus 103 ~~~i~v~d~~---------~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~--------- 162 (191)
T 1oix_A 103 VGALLVYDIA---------KHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE--------- 162 (191)
T ss_dssp CEEEEEEETT---------CHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH---------
T ss_pred CEEEEEEECc---------CHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHH---------
Confidence 9999999998 556677776676655432 22468999999999997543332222322322
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.....++++||+++. |++++|+.+.+.+
T Consensus 163 --------~~~~~~ld~Sald~~-~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 --------KNGLSFIETSALDST-NVEAAFQTILTEI 190 (191)
T ss_dssp --------HTTCEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred --------HcCCEEEEEeCCCCC-CHHHHHHHHHHHh
Confidence 112358899999999 9999999998753
No 132
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=2.9e-18 Score=190.38 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=119.1
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
...+|+++|.+|+|||||+++|++..+ .... .|.++....+.+.+ ..+.+|||||+.++... +..+++.
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~~~--~T~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~-------~~~~~~~ 389 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTI--PTVGFNVETVTYKN-VKFNVWDVGGQDKIRPL-------WRHYYTG 389 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CCCC--CCSSEEEEEEESSS-CEEEEEEECCCGGGSGG-------GGGGGTT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CCcC--CccceeEEEEEeCC-EEEEEEECCCcHHHHHH-------HHHHhcc
Confidence 346899999999999999999999773 3333 36677777788776 48999999997654432 4478899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..|..++... ....++|+|||+||+|+.+.... .++.+.+. .
T Consensus 390 ad~~i~V~D~~---------~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~---~----- 450 (497)
T 3lvq_E 390 TQGLIFVVDCA---------DRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKP-HEIQEKLG---L----- 450 (497)
T ss_dssp CCEEEEEEETT---------CGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCCCH-HHHHHHTT---C-----
T ss_pred CCEEEEEEECc---------chhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCCCH-HHHHHHhc---h-----
Confidence 99999999999 677888887777665432 12357999999999999754221 11111111 0
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAE 625 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~ 625 (654)
.+ ....+.++|++||++|+ ||+++|+.|.+.++....
T Consensus 451 --~~---~~~~~~~~~~~SA~~g~-gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 451 --TR---IRDRNWYVQPSCATSGD-GLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp --TT---CCSSCEEEEECBTTTTB-THHHHHHHHHHHCC----
T ss_pred --hh---hhcCCeEEEEEECCCCC-CHHHHHHHHHHHHHhcCC
Confidence 00 11234579999999999 999999999998865443
No 133
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.74 E-value=1e-17 Score=160.54 Aligned_cols=169 Identities=21% Similarity=0.253 Sum_probs=108.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc----ccchhHHHHHHh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR----NLGMGHQFLRHV 500 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~----~~~~~~~~~~~~ 500 (654)
.+|+++|.+|+|||||++++++..+.....|++|..... +.+. .+.+|||||+...... .+.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC---CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 489999999999999999999988766677777765543 3343 5899999997543221 223444555666
Q ss_pred hc-ccEEEEEEeCCCcccCCCCCccchHHHH-HHHHHH--------HHHhhcccCCCCEEEEEeCCCccChHHHHHHHHH
Q psy1086 501 ER-TKLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKE--------LELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRD 570 (654)
Q Consensus 501 ~~-a~~~ilV~D~~~~~~~~~~~~~~~~e~~-~~~~~~--------l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~ 570 (654)
+. ++++++|+|+. +..+++.+ ..|... +... ....+.|+++|+||+|+...+ .+ ..+
T Consensus 77 ~~~~~~~~~v~~v~---------d~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~-~~~ 143 (190)
T 2cxx_A 77 EDNAKNIDVAVLVV---------DGKAAPEIIKRWEKRGEIPIDVEFYQF-LRELDIPTIVAVNKLDKIKNV--QE-VIN 143 (190)
T ss_dssp HHHGGGCCEEEEEE---------ETTHHHHHHHHHHHTTCCCHHHHHHHH-HHHTTCCEEEEEECGGGCSCH--HH-HHH
T ss_pred HhhhccCCEEEEEE---------cchhhhhHHHhhhccCccHHHHHHHHH-HHhcCCceEEEeehHhccCcH--HH-HHH
Confidence 65 66666666655 33455544 444331 1111 122478999999999998654 11 111
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
.+++ ... ..|. ....+++++||++|. ||+++|+.+.+.+.+
T Consensus 144 ~~~~---~~~---~~~~----~~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 144 FLAE---KFE---VPLS----EIDKVFIPISAKFGD-NIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHH---HHT---CCGG----GHHHHEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred HHHH---Hhh---hhhh----ccCCcEEEEecCCCC-CHHHHHHHHHHhcch
Confidence 1211 110 0110 012358999999999 999999999987754
No 134
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=177.11 Aligned_cols=163 Identities=21% Similarity=0.199 Sum_probs=112.7
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+..+|+++|.+|+|||||+++|++..+ ....| |.......+.+.+ ..+.+|||||..++.. .+..+++.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~-------~~~~~~~~ 232 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKN-ISFTVWDVGGQDKIRP-------LWRHYFQN 232 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETT-EEEEEEECC-----CC-------SHHHHHTT
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCc-EEEEEEECCCCHhHHH-------HHHHHhcc
Confidence 345899999999999999999998764 23333 5555566677766 4899999999655433 34478899
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
+|++++|||++ ++.+++.+..+..++... ....+.|+|||+||+|+.+.... .++.+.+.. .
T Consensus 233 ad~vilV~D~~---------~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~~-~~i~~~~~~---~---- 294 (329)
T 3o47_A 233 TQGLIFVVDSN---------DRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNA-AEITDKLGL---H---- 294 (329)
T ss_dssp EEEEEEEEETT---------CSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTC---T----
T ss_pred CCEEEEEEECC---------chHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccCH-HHHHHHhch---h----
Confidence 99999999998 667787777665554322 12347899999999999764322 112221110 0
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+ ......++|+|||++|. ||++||+.|.+.+.
T Consensus 295 ---~---~~~~~~~~~~vSAk~g~-gi~el~~~l~~~l~ 326 (329)
T 3o47_A 295 ---S---LRHRNWYIQATCATSGD-GLYEGLDWLSNQLR 326 (329)
T ss_dssp ---T---CCSSCEEEEECBTTTTB-THHHHHHHHHHHHT
T ss_pred ---h---hhcCCCEEEEEECCCCc-CHHHHHHHHHHHHH
Confidence 0 01234579999999999 99999999988764
No 135
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.74 E-value=2.2e-17 Score=174.82 Aligned_cols=176 Identities=23% Similarity=0.370 Sum_probs=113.9
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcccc-chhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL-GMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~-~~~~~~~~~~~~a~ 504 (654)
.|+++|++|+|||||+|+|++......+.+++|.++..+.+.+++ ..+.+|||||+.+..+... .....++.+++.||
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCC
Confidence 499999999999999999999877667789999999999999987 5899999999866432221 12244566789999
Q ss_pred EEEEEEeCCCcccCCCCCccc--hHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRS--CVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~--~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
++++|+|+++ .. ..+.+..|.+.+... ...+.|+|+|+||+|+..... .. ..+....+...+.
T Consensus 260 ~il~VvD~s~---------~~~~~~~~~~~~~~~L~~l--~~~~~p~ilV~NK~Dl~~~~~-~~-~~~~~~~l~~~l~-- 324 (364)
T 2qtf_A 260 ALILVIDSTF---------SENLLIETLQSSFEILREI--GVSGKPILVTLNKIDKINGDL-YK-KLDLVEKLSKELY-- 324 (364)
T ss_dssp EEEEEEETTS---------CHHHHHHHHHHHHHHHHHH--TCCSCCEEEEEECGGGCCSCH-HH-HHHHHHHHHHHHC--
T ss_pred EEEEEEECCC---------CcchHHHHHHHHHHHHHHh--CcCCCCEEEEEECCCCCCchH-HH-HHHHHHHHHHHhc--
Confidence 9999999983 23 445555555555433 224689999999999975421 11 0011111111100
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHh
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEE 627 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~ 627 (654)
....+++++||++|. |+++|++.|.+.+....+.+
T Consensus 325 ---------~~~~~~~~~SA~~g~-gi~~L~~~I~~~l~~~~~~~ 359 (364)
T 2qtf_A 325 ---------SPIFDVIPISALKRT-NLELLRDKIYQLATQLSLEH 359 (364)
T ss_dssp ---------SCEEEEEECBTTTTB-SHHHHHHHHHHHHHHHC---
T ss_pred ---------CCCCcEEEEECCCCc-CHHHHHHHHHHHhcccCCCC
Confidence 011257999999999 99999999999887765544
No 136
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.60 E-value=1.1e-19 Score=176.92 Aligned_cols=166 Identities=16% Similarity=0.093 Sum_probs=109.0
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
+..+|+++|.+|+|||||++++++..+.. .+.+++.+.....+.+++. ..+.+|||||+.++. ..+..+++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~ 100 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYP 100 (204)
Confidence 34689999999999999999999865533 3333444444444444432 256699999975543 33446789
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHh
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHN 574 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~ 574 (654)
.+|++++|||++ ++.+++.+. .|...+.... .+.|++||+||+|+.+.....+.+.+. ..+
T Consensus 101 ~~d~iilv~D~~---------~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 3th5_A 101 QTDVFLICFSLV---------SPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
Confidence 999999999998 556666665 5655554321 268999999999997653222111110 000
Q ss_pred hHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 575 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
..+.. ......++|++||++|. ||+++|+.|.+.
T Consensus 169 ~~~~~----------~~~~~~~~~~vSA~~g~-gi~~l~~~l~~~ 202 (204)
T 3th5_A 169 GLAMA----------KEIGAVKYLECSALTQR-GLKTVFDEAIRA 202 (204)
Confidence 11111 01122368999999999 999999998764
No 137
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.74 E-value=4.8e-18 Score=175.00 Aligned_cols=164 Identities=17% Similarity=0.167 Sum_probs=104.5
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
||+++|..|||||||++++.+...... .....|.......+ +...+++||||||++++.... + .+..|+++|+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~--l--~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS--Y--DSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS--H--HHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh--h--hhhhhccCCC
Confidence 589999999999999998876533221 11223333333333 333479999999988764211 1 2457899999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH-------HHHHHHHHHHHhhHh
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ-------EIYDGIRDTLHNLKD 577 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~-------~v~~~~~~~~~~~~~ 577 (654)
++++|||++ ++ .++.+..|.+++........+.|++||+||+|+.... ++..+..+.+++
T Consensus 75 ~~IlV~Dit---------d~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~--- 141 (331)
T 3r7w_B 75 ALVYVIDSQ---------DE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE--- 141 (331)
T ss_dssp EEEEECCCS---------SC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSS---
T ss_pred EEEEEEECC---------ch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHh---
Confidence 999999998 44 4455555544443222123478999999999997642 222222221111
Q ss_pred hhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.... ...+++|+|||++ . +|.++|..|++.+
T Consensus 142 ---~~~~-------~~~i~f~eTSAkd-~-nV~eAFs~iv~~l 172 (331)
T 3r7w_B 142 ---LGLD-------GVQVSFYLTSIFD-H-SIYEAFSRIVQKL 172 (331)
T ss_dssp ---SSCS-------CCCEEEECCCSSS-S-HHHHHHHHHHTTS
T ss_pred ---hccc-------ccCceEEEeccCC-C-cHHHHHHHHHHHH
Confidence 1000 1246799999997 5 8999999998755
No 138
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.74 E-value=1.1e-16 Score=169.80 Aligned_cols=169 Identities=30% Similarity=0.374 Sum_probs=120.2
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccc-hh-HHHHHHhh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLG-MG-HQFLRHVE 501 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~-~~-~~~~~~~~ 501 (654)
..+|+++|.+|+|||||++++++........+++|.+.....+...+ ..+.+|||||+.+....... .. ..+.....
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 245 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY-FRYQIIDTPGLLDRPISERNEIEKQAILALRY 245 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT-EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC-ceEEEEeCCCccccchhhhhHHHHHHHHHHHh
Confidence 35899999999999999999999876666778888888887777765 47999999998765332211 11 22223334
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 581 (654)
.+|++++|+|+++. ...+++....|..++.... .+.|+|+|+||+|+....++.+ ..+...
T Consensus 246 ~ad~illV~D~s~~-------~~~~~~~~~~~~~~i~~~~---~~~piilV~NK~Dl~~~~~~~~-~~~~~~-------- 306 (357)
T 2e87_A 246 LGNLIIYIFDPSEH-------CGFPLEEQIHLFEEVHGEF---KDLPFLVVINKIDVADEENIKR-LEKFVK-------- 306 (357)
T ss_dssp TCSEEEEEECTTCT-------TSSCHHHHHHHHHHHHHHT---TTSCEEEEECCTTTCCHHHHHH-HHHHHH--------
T ss_pred cCCEEEEEEeCCcc-------ccCCHHHHHHHHHHHHHhc---CCCCEEEEEECcccCChHHHHH-HHHHHH--------
Confidence 69999999999732 1124555566666654321 2789999999999987654421 111111
Q ss_pred CCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
....++++|||++|+ ||++||+.+.+.+...
T Consensus 307 ----------~~~~~~~~iSA~~g~-gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 307 ----------EKGLNPIKISALKGT-GIDLVKEEIIKTLRPL 337 (357)
T ss_dssp ----------HTTCCCEECBTTTTB-THHHHHHHHHHHHHHH
T ss_pred ----------hcCCCeEEEeCCCCc-CHHHHHHHHHHHHHHH
Confidence 112468999999999 9999999999988654
No 139
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.73 E-value=8.8e-18 Score=176.07 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=113.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc-eEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~-~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|.+|+|||||++++++..+ ...+.+++.+.....+.+++.. .+.+|||||+.++.... ..+++.+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 227 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR-------PLSYPQT 227 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTG-------GGGCTTC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHH-------HHhccCC
Confidence 5899999999999999999998755 3344455555555666666531 45699999976654332 2568899
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHH------HHhhH
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT------LHNLK 576 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~------~~~~~ 576 (654)
|++++|||++ ++.+++.+. .|...+.... .+.|++||+||+|+.+.....+.+.+. ..+..
T Consensus 228 d~~i~v~d~~---------~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 228 DVFLICFSLV---------SPASFHHVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp SEEEEEEETT---------CHHHHHHHHHTHHHHHHHHC---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred CEEEEEEeCC---------CHHHHHHHHHHHHHHHHhhC---CCCcEEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 9999999998 677787776 5766665432 278999999999997543221111100 00001
Q ss_pred hhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+.... ....++|+|||++|. ||+++|+.+.+.+
T Consensus 296 ~~~~~----------~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 296 AMAKE----------IGAVKYLECSALTQR-GLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHH----------TTCSEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred HHHHH----------cCCcEEEEecCCCCc-CHHHHHHHHHHHH
Confidence 11100 122378999999999 9999999998765
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.73 E-value=3.1e-18 Score=184.21 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=114.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 503 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a 503 (654)
.+|+++|+.++|||||+++|++..+. .+..+++|.++....+.+.+...+.+|||||+.++..........+..+++.|
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a 114 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence 58999999999999999999998764 45688999999999999887558999999999887765554556677899999
Q ss_pred cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 504 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 504 ~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
|++++|+|++. . +....|..++.. .+.|+|+|+||+|+...... +.. .++.+
T Consensus 115 D~vllVvD~~~---------~---~~~~~~l~~l~~-----~~~piIvV~NK~Dl~~~~~~--~~~---~~l~~------ 166 (423)
T 3qq5_A 115 DCGILVTDSAP---------T---PYEDDVVNLFKE-----MEIPFVVVVNKIDVLGEKAE--ELK---GLYES------ 166 (423)
T ss_dssp SEEEEECSSSC---------C---HHHHHHHHHHHH-----TTCCEEEECCCCTTTTCCCT--HHH---HHSSC------
T ss_pred CEEEEEEeCCC---------h---HHHHHHHHHHHh-----cCCCEEEEEeCcCCCCccHH--HHH---HHHHH------
Confidence 99999999841 1 233445555543 37899999999999865432 111 11111
Q ss_pred CCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
..+.+++++||++|. ||+++|+.|.+.+.
T Consensus 167 --------~~g~~v~~vSAktg~-gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 167 --------RYEAKVLLVSALQKK-GFDDIGKTISEILP 195 (423)
T ss_dssp --------CTTCCCCCCSSCCTT-STTTHHHHHHHHSC
T ss_pred --------HcCCCEEEEECCCCC-CHHHHHHHHHHhhh
Confidence 112478999999999 99999999998884
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.73 E-value=9.4e-21 Score=207.42 Aligned_cols=266 Identities=18% Similarity=0.192 Sum_probs=180.6
Q ss_pred CceeeeEEEEEEeCCCCCCCCCCCC-----CCCCCCcEEEEecCCC-ChhhhhhhcCCceEEcCCCCCCCcCCcCCCCCC
Q psy1086 41 SRFLDSLSLYVKGGSGGNGQPKYGG-----LGGRGGNVVCKVKAGA-SLESVKKQFKGVRITAASGDNSLVHRLAGRNGE 114 (654)
Q Consensus 41 ~~f~d~~~~~~~~g~gg~g~~~~gg-----~gg~gg~v~~~~~~~~-~~~~~~~~~~~~~~~a~~g~~g~~~~~~g~~g~ 114 (654)
..|+|++.|.+..| |.|+=| -||+||.|+++ ..+ +|.++ ....|+.|+.++....+|+
T Consensus 86 ~~~iDe~~v~~~~~-----p~Sft~Ed~ve~~~hGg~~v~~--~~l~~l~~~------g~r~A~~Geft~raf~nGk--- 149 (482)
T 1xzp_A 86 GEDVDEVVVVFYKS-----PKSYTGEDMVEVMCHGGPLVVK--KLLDLFLKS------GARMAEPGEFTKRAFLNGK--- 149 (482)
T ss_dssp SCCCCEEEEEEECT-----TSSSSSSCEEEEEECSCHHHHH--HHHHHHHTT------TCEECCTTHHHHHHHHTTS---
T ss_pred CeeeeEEEEEEEeC-----CCcCCCCCEeeecCcCcHHHHH--HHHHHHHHc------CCEeCCCCCcCCcCCCcCC---
Confidence 57999999999997 666422 25899999976 334 55544 3567888877766666555
Q ss_pred CEEEEcCCCcEEEec-CcceeccccccC---cEEEEeccCcCCCCCC-------------------CCccc-cc------
Q psy1086 115 DKILELPVGITAYAD-GGTKLGELNTEE---DSIIIAHGGAGGNAQN-------------------GWLGR-KG------ 164 (654)
Q Consensus 115 ~~~~~vp~gt~v~~~-~~~~~~~l~~~~---~~~~~a~Gg~gg~gn~-------------------~f~g~-~G------ 164 (654)
.|. +.+.++||.... +.....+++.|++++. .|..+ ++
T Consensus 150 ------------~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~eei~~~~~~i~ 217 (482)
T 1xzp_A 150 ------------MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGEVV 217 (482)
T ss_dssp ------------SCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCHHHHH
T ss_pred ------------cCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCccccchHHHHH
Confidence 253 357788887654 2235566777776553 12221 11
Q ss_pred -ceeeEEEEEe-------------ecCcEEEEcCCCCcHHHHHHHHHccC-CCCCCCCccccccceEEEEeCCCccEEEE
Q psy1086 165 -EELAVRLELK-------------LIADIGLVGFPNAGKSTFLKAISRAR-PKIASYPFTTIKPNVGVITFDDFRKMSVA 229 (654)
Q Consensus 165 -e~~~i~L~lk-------------~~~~VgLVG~~gaGKSTLl~~Lsg~~-~~i~~~~~tTl~p~~G~v~~~~~~~~~i~ 229 (654)
+...+..+|+ .+.+|+|+|.||||||||+|+|++.. +.+.++|+||+++..+.+.+++ ..+.++
T Consensus 218 ~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-~~~~l~ 296 (482)
T 1xzp_A 218 TRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-ILFRIV 296 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-EEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-eEEEEE
Confidence 0112222222 23689999999999999999999985 5678999999999999999876 589999
Q ss_pred ecCccc-ccccccccch-HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecc
Q psy1086 230 DLPGLI-EGAHRNLGMG-HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNK 307 (654)
Q Consensus 230 D~PGl~-~~~~~~~~l~-~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK 307 (654)
||||+. +.......++ ...+.+++.+|++++|+|++.. ....... +. ..+..+|.++|+||
T Consensus 297 DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~---------~s~~~~~-----il---~~l~~~piivV~NK 359 (482)
T 1xzp_A 297 DTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP---------LDEEDRK-----IL---ERIKNKRYLVVINK 359 (482)
T ss_dssp ESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC---------CCHHHHH-----HH---HHHTTSSEEEEEEE
T ss_pred ECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC---------CCHHHHH-----HH---HHhcCCCEEEEEEC
Confidence 999987 6554444444 3457788999999999998742 1112221 11 11247899999999
Q ss_pred cCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 308 MDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 308 ~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+|+..... .+.+.+.... ..+++++||+++ +|++++++.|.+.+.
T Consensus 360 ~DL~~~~~-~~~~~~~~~~-------------------~~~~i~iSAktg-~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 360 VDVVEKIN-EEEIKNKLGT-------------------DRHMVKISALKG-EGLEKLEESIYRETQ 404 (482)
T ss_dssp CSSCCCCC-HHHHHHHHTC-------------------STTEEEEEGGGT-CCHHHHHHHHHHHTH
T ss_pred cccccccC-HHHHHHHhcC-------------------CCcEEEEECCCC-CCHHHHHHHHHHHHh
Confidence 99965311 2222222110 025899999999 999999999987654
No 142
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.73 E-value=5.9e-18 Score=171.04 Aligned_cols=168 Identities=18% Similarity=0.145 Sum_probs=105.6
Q ss_pred ceEEEEcCC---------CCChhhHHHHHHhc---CCCccCCCcc-cccceeEEEE--------------eCC-CceEEE
Q psy1086 425 ADIGLVGFP---------NAGKSTFLKAISRA---RPKIASYPFT-TIKPNVGVIT--------------FDD-FRKMSV 476 (654)
Q Consensus 425 ~~v~~~G~~---------~~GKstl~~~l~~~---~~~~~~~~~~-t~~~~~~~v~--------------~~~-~~~~~i 476 (654)
.||+++|.+ |||||||+++|++. .+.....+++ +.++....+. +++ ...+.+
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i 99 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHI 99 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEE
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEE
Confidence 589999999 99999999999984 3333344443 3444332221 121 136889
Q ss_pred Ee------cCCCCCCCcccc----------chhHHHHHHhh---------------------cccEEEEEEeCCCcccCC
Q psy1086 477 AD------LPGLIEGAHRNL----------GMGHQFLRHVE---------------------RTKLIAMIVDVNGFQLGL 519 (654)
Q Consensus 477 ~D------TpG~~~~~~~~~----------~~~~~~~~~~~---------------------~a~~~ilV~D~~~~~~~~ 519 (654)
|| |||......... .+...+..+++ .||++++|||++
T Consensus 100 ~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t------ 173 (255)
T 3c5h_A 100 VEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS------ 173 (255)
T ss_dssp EEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB------
T ss_pred EEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC------
Confidence 98 555433322100 00000111222 799999999998
Q ss_pred CCCcc--chHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccce
Q psy1086 520 KHPKR--SCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSI 597 (654)
Q Consensus 520 ~~~~~--~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (654)
++ .+++.+..|..++.... ...+.|+|||+||+|+.+.+.+ ++.. .+.. . ..+.++
T Consensus 174 ---~~~~~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~v-~~~~-~~~~---~-------------~~~~~~ 231 (255)
T 3c5h_A 174 ---RGMNRNFDDQLKFVSNLYNQL-AKTKKPIVVVLTKCDEGVERYI-RDAH-TFAL---S-------------KKNLQV 231 (255)
T ss_dssp ---C----CHHHHHHHHHHHHHHH-HHTTCCEEEEEECGGGBCHHHH-HHHH-HHHH---T-------------SSSCCE
T ss_pred ---CCchhhHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccccccHHH-HHHH-HHHH---h-------------cCCCeE
Confidence 55 78888888887775431 1246899999999999876554 2111 1211 0 123468
Q ss_pred EEEeeecCCCChHHHHHHHHHHHH
Q psy1086 598 LPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 598 ~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+++||++|. ||+++|+.|.+.+.
T Consensus 232 ~e~SAk~g~-gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 232 VETSARSNV-NVDLAFSTLVQLID 254 (255)
T ss_dssp EECBTTTTB-SHHHHHHHHHHHHH
T ss_pred EEEECCCCC-CHHHHHHHHHHHhc
Confidence 999999999 99999999987663
No 143
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.72 E-value=4e-18 Score=176.46 Aligned_cols=194 Identities=25% Similarity=0.293 Sum_probs=122.3
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCC-CCCc-cccchhHHHHHH
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLI-EGAH-RNLGMGHQFLRH 499 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~-~~~~-~~~~~~~~~~~~ 499 (654)
+..+|+++|++|+|||||+|+|++..+.. +..+++|.+...+.+..++ .++.+|||||+. +... ....+...+..+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-YQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 34579999999999999999999987654 4567788877777777766 489999999975 2110 000111122356
Q ss_pred hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh-HHHHHHHHHHHHhhHhh
Q psy1086 500 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA-QEIYDGIRDTLHNLKDH 578 (654)
Q Consensus 500 ~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~-~~v~~~~~~~~~~~~~~ 578 (654)
++.+|++++|+|+++ ++. .. ..+.+.+ ...+.|.|+|+||+|+... ..+.+. +.++.+.
T Consensus 86 l~~~D~vl~Vvd~~~----~~~------~~-~~i~~~l-----~~~~~P~ilvlNK~D~~~~~~~~~~~----l~~l~~~ 145 (301)
T 1ega_A 86 IGDVELVIFVVEGTR----WTP------DD-EMVLNKL-----REGKAPVILAVNKVDNVQEKADLLPH----LQFLASQ 145 (301)
T ss_dssp CCCEEEEEEEEETTC----CCH------HH-HHHHHHH-----HSSSSCEEEEEESTTTCCCHHHHHHH----HHHHHTT
T ss_pred HhcCCEEEEEEeCCC----CCH------HH-HHHHHHH-----HhcCCCEEEEEECcccCccHHHHHHH----HHHHHHh
Confidence 788999999999973 111 11 1111112 1246899999999999863 222222 2222111
Q ss_pred hccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHH-----HhhHhHHHHHHHHHHHHHHHHhhhcCc
Q psy1086 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAE-----EEQEMVDRELELVKKLKSSLREHQGEM 652 (654)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (654)
..+.+++++||++|. |+++|++.+.+.+.+... ...+.+.+.. .++..|+.+.+..+|.
T Consensus 146 -------------~~~~~~i~iSA~~g~-~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~-~~e~~re~l~~~l~~e 209 (301)
T 1ega_A 146 -------------MNFLDIVPISAETGL-NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFM-ASEIIREKLMRFLGAE 209 (301)
T ss_dssp -------------SCCSEEEECCTTTTT-THHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHH-HHHHHHHHHHHHHGGG
T ss_pred -------------cCcCceEEEECCCCC-CHHHHHHHHHHhCCcCCCCCCccccCCCCHHHH-HHHHHHHHHHHHhCCC
Confidence 122358999999999 999999999876543211 1111223322 4555677776665553
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.68 E-value=5.5e-18 Score=186.94 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=117.1
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
++.++|+++|++++|||||+++|.+..+.....+++|.+.....+.++++..+.+|||||+.++..... .+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~-------~~~~ 74 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA-------RGTQ 74 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-------SSSB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-------HHHc
Confidence 345789999999999999999999987767778899998888777775556899999999876654443 5678
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH--HHHHHHHHHHHhhHhhh
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EIYDGIRDTLHNLKDHI 579 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~--~v~~~~~~~~~~~~~~~ 579 (654)
.+|++++|+|+++ ....++...|. .+ ...+.|+|+|+||+|+.+.. .+..+ +.+..
T Consensus 75 ~aD~vILVVDa~d---------g~~~qt~e~l~-~~-----~~~~vPiIVViNKiDl~~~~~~~v~~~----l~~~~--- 132 (537)
T 3izy_P 75 VTDIVILVVAADD---------GVMKQTVESIQ-HA-----KDAHVPIVLAINKCDKAEADPEKVKKE----LLAYD--- 132 (537)
T ss_dssp SBSSCEEECBSSS---------CCCHHHHHHHH-HH-----HTTTCCEEECCBSGGGTTTSCCSSSSH----HHHTT---
T ss_pred cCCEEEEEEECCC---------CccHHHHHHHH-HH-----HHcCCcEEEEEecccccccchHHHHHH----HHhhh---
Confidence 9999999999983 22333333222 11 12468999999999997532 11111 11110
Q ss_pred ccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 580 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
... +.+....++|++||++|. ||++||+.+..++.
T Consensus 133 -~~~-----e~~~~~~~iv~vSAktG~-GI~eLle~I~~l~~ 167 (537)
T 3izy_P 133 -VVC-----EDYGGDVQAVHVSALTGE-NMMALAEATIALAE 167 (537)
T ss_dssp -SCC-----CCSSSSEEECCCCSSSSC-SSHHHHHHHHHHHT
T ss_pred -hhH-----HhcCCCceEEEEECCCCC-CchhHHHHHHHhhh
Confidence 001 111234589999999999 99999999987764
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.68 E-value=3.5e-17 Score=178.32 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=99.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc-cccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~-~~~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|||||||+|+|++..... .+.+++|++.....+.+.+ ..+.+|||||+..... ....+..++..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS-SCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC-ceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999987653 5689999999888888877 4799999999863321 123466777889999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
||++++|+|++. ..+... ..+...+ ...++|+++|+||+|+..... ...+
T Consensus 83 ad~il~vvD~~~---------~~~~~d-~~~~~~l-----~~~~~pvilv~NK~D~~~~~~----------~~~~----- 132 (436)
T 2hjg_A 83 ADVIIFMVNGRE---------GVTAAD-EEVAKIL-----YRTKKPVVLAVNKLDNTEMRA----------NIYD----- 132 (436)
T ss_dssp CSEEEEEEETTT---------CSCHHH-HHHHHHH-----TTCCSCEEEEEECCCC---------------CCCS-----
T ss_pred CCEEEEEEeCCC---------CCCHHH-HHHHHHH-----HHcCCCEEEEEECccCccchh----------hHHH-----
Confidence 999999999983 222222 1122222 125789999999999864321 0000
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+ ......+++++||++|. |+.+|++.+.+.+.
T Consensus 133 ---~---~~lg~~~~~~iSA~~g~-gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 133 ---F---YSLGFGEPYPISGTHGL-GLGDLLDAVAEHFK 164 (436)
T ss_dssp ---S---GGGSSCCCEECBTTTTB-THHHHHHHHHHTGG
T ss_pred ---H---HHcCCCCeEEEeCcCCC-ChHHHHHHHHHhcC
Confidence 0 00122257999999999 99999999987764
No 146
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.67 E-value=4.8e-17 Score=181.97 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=100.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeE------EEEeCC---CceEEEEecCCCCCCCccccchhHH
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVG------VITFDD---FRKMSVADLPGLIEGAHRNLGMGHQ 495 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~------~v~~~~---~~~~~i~DTpG~~~~~~~~~~~~~~ 495 (654)
.||+++|.+|||||||++++++..+.....++++.+.... .+.++. ...+.+|||||+..+.....
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~----- 116 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ----- 116 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH-----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH-----
Confidence 5899999999999999999999876544444444443322 122221 24799999999766554332
Q ss_pred HHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhh
Q psy1086 496 FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 575 (654)
Q Consensus 496 ~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~ 575 (654)
.+++.+|++++|+|++. ++.+..|..++..+. .+.|+|||+||+|+...+++..+..+.+
T Consensus 117 --~~l~~~d~ii~V~D~s~------------~~~~~~~~~~l~~~~---~~~pvilV~NK~Dl~~~~~v~~~~~~~~--- 176 (535)
T 3dpu_A 117 --FFMTRSSVYMLLLDSRT------------DSNKHYWLRHIEKYG---GKSPVIVVMNKIDENPSYNIEQKKINER--- 176 (535)
T ss_dssp --HHHHSSEEEEEEECGGG------------GGGHHHHHHHHHHHS---SSCCEEEEECCTTTCTTCCCCHHHHHHH---
T ss_pred --HHccCCcEEEEEEeCCC------------chhHHHHHHHHHHhC---CCCCEEEEEECCCcccccccCHHHHHHH---
Confidence 56889999999999983 244567777776542 3689999999999986544322211111
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
.. ....++|+|||++|. ||++||+.+.+.+...
T Consensus 177 ---~~-----------~~~~~~~~vSA~~g~-gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 177 ---FP-----------AIENRFHRISCKNGD-GVESIAKSLKSAVLHP 209 (535)
T ss_dssp ---CG-----------GGTTCEEECCC------CTTHHHHHHHHHTCT
T ss_pred ---HH-----------hcCCceEEEecCccc-CHHHHHHHHHHHHhcc
Confidence 10 112368999999999 9999999999988643
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.67 E-value=4.3e-16 Score=171.30 Aligned_cols=162 Identities=25% Similarity=0.348 Sum_probs=106.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcC-------CCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHH
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRAR-------PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFL 497 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~-------~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~ 497 (654)
.+|+++|+.++|||||+++|++.. ......+++|.+.....+.+++ ..+.+|||||+ +.+...+.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~iiDtPGh-------~~~~~~~~ 91 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-YRITLVDAPGH-------ADLIRAVV 91 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-EEEEECCCSSH-------HHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-EEEEEEECCCh-------HHHHHHHH
Confidence 589999999999999999999876 2233467788888777787876 58999999994 44667778
Q ss_pred HHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHh
Q psy1086 498 RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKD 577 (654)
Q Consensus 498 ~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~ 577 (654)
.+++.||++++|+|+++. + ..++.+.+. .+. ..+.|.|+|+||+|+.+.... +...+. +.+
T Consensus 92 ~~~~~aD~~ilVvda~~g---~---~~qt~e~l~----~~~-----~~~ip~IvviNK~Dl~~~~~~-~~~~~~---l~~ 152 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEG---P---KTQTGEHML----ILD-----HFNIPIIVVITKSDNAGTEEI-KRTEMI---MKS 152 (482)
T ss_dssp HHTTSCCEEEEEEETTTC---S---CHHHHHHHH----HHH-----HTTCCBCEEEECTTSSCHHHH-HHHHHH---HHH
T ss_pred HHHhhCCEEEEEEecCCC---c---cHHHHHHHH----HHH-----HcCCCEEEEEECCCcccchhH-HHHHHH---HHH
Confidence 899999999999999832 1 123333332 111 136888999999999864322 112211 222
Q ss_pred hhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 578 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.+.... .+...+++++||++|. ||++|++.|.+.+.
T Consensus 153 ~l~~~~-------~~~~~~ii~vSA~~g~-gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 153 ILQSTH-------NLKNSSIIPISAKTGF-GVDELKNLIITTLN 188 (482)
T ss_dssp HHHHSS-------SGGGCCEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred HHhhhc-------ccccceEEEEECcCCC-CHHHHHHHHHHhhc
Confidence 221110 1224579999999999 99999999988765
No 148
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.66 E-value=1.8e-16 Score=163.74 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC------ccCCCc----------------------ccccc---------------
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK------IASYPF----------------------TTIKP--------------- 461 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~------~~~~~~----------------------~t~~~--------------- 461 (654)
.+|+++|.+|+|||||+|+|++..+. ....|+ +|.+.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~ 106 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence 68999999999999999999998764 122343 23221
Q ss_pred --------eeEEEEeCCCceEEEEecCCCCCCCc--ccc----chhHHHHHHhhcccEEE-EEEeCCCcccCCCCCccch
Q psy1086 462 --------NVGVITFDDFRKMSVADLPGLIEGAH--RNL----GMGHQFLRHVERTKLIA-MIVDVNGFQLGLKHPKRSC 526 (654)
Q Consensus 462 --------~~~~v~~~~~~~~~i~DTpG~~~~~~--~~~----~~~~~~~~~~~~a~~~i-lV~D~~~~~~~~~~~~~~~ 526 (654)
....+...+...+.+|||||+.+... ..+ .+...+..|++.++.++ +|+|++.. + .
T Consensus 107 ~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~---~------~ 177 (299)
T 2aka_B 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD---L------A 177 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC---G------G
T ss_pred CCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc---h------h
Confidence 00111222224799999999875321 011 35567778899888776 69999731 1 1
Q ss_pred HHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH-HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecC
Q psy1086 527 VETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 605 (654)
Q Consensus 527 ~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg 605 (654)
......+..++ ...+.|+++|+||+|+.+... ..+. + ......+ ...+.+++++||++|
T Consensus 178 ~~~~~~~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~~~~----~---~~~~~~~--------~~~~~~v~~~SA~~~ 237 (299)
T 2aka_B 178 NSDALKIAKEV-----DPQGQRTIGVITKLDLMDEGTDARDV----L---ENKLLPL--------RRGYIGVVNRSQKDI 237 (299)
T ss_dssp GCHHHHHHHHH-----CTTCSSEEEEEECGGGSCTTCCCHHH----H---TTCSSCC--------TTCEEECCCCCCBCT
T ss_pred hhHHHHHHHHh-----CCCCCeEEEEEEccccCCCCchHHHH----H---hCCcCcC--------CCCcEEEECCChhhc
Confidence 11222233332 224689999999999976532 1111 1 1111000 012357899999999
Q ss_pred CCChHHHHHHHHHHHH
Q psy1086 606 STDVNDAKLKIRSILD 621 (654)
Q Consensus 606 ~~gv~el~~~i~~~~~ 621 (654)
. |+++||+.+.+...
T Consensus 238 ~-gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 238 D-GKKDITAALAAERK 252 (299)
T ss_dssp T-SCBCHHHHHHHHHH
T ss_pred c-ccccHHHHHHHHHH
Confidence 9 99999999987443
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.66 E-value=5.2e-16 Score=168.82 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=106.1
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc-------------------------------cCCCcccccceeEEEEeCCCc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI-------------------------------ASYPFTTIKPNVGVITFDDFR 472 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~v~~~~~~ 472 (654)
..+|+++|+.++|||||+++|++....+ ...+++|.+.....+.+++ .
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~-~ 95 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK-K 95 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-e
Confidence 3589999999999999999997653211 1136788888888888876 4
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcc--cCCCCCccchHHHHHHHHHHHHHhhcccCCCC-E
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQ--LGLKHPKRSCVETVLLLNKELELYKMNLLEKP-I 549 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~ 549 (654)
.+.+|||||+. .+...+..+++.||++++|+|++... .++.. ..+..+.+. .+ ...+.| +
T Consensus 96 ~~~iiDTPGh~-------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~-~~qt~e~l~----~~-----~~~~v~~i 158 (439)
T 3j2k_7 96 HFTILDAPGHK-------SFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAM----LA-----KTAGVKHL 158 (439)
T ss_pred EEEEEECCChH-------HHHHHHHhhHhhCCEEEEEEECCCCccccccCC-CchHHHHHH----HH-----HHcCCCeE
Confidence 89999999954 45667778899999999999998431 01110 011222211 11 113566 9
Q ss_pred EEEEeCCCccCh---HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHH
Q psy1086 550 ILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 614 (654)
Q Consensus 550 iiv~NK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~ 614 (654)
|+|+||+|+... +...+++.+.+.+ .+..++ | ......+++++||++|. |++++++
T Consensus 159 IvviNK~Dl~~~~~~~~~~~~i~~~~~~---~l~~~g--~---~~~~~~~~i~iSA~~G~-ni~~l~~ 217 (439)
T 3j2k_7 159 IVLINKMDDPTVNWSNERYEECKEKLVP---FLKKVG--F---NPKKDIHFMPCSGLTGA-NLKEQSD 217 (439)
T ss_pred EEEeecCCCcccchHHHHHHHHHHHHHH---HHHHhc--c---cccCCeeEEEeeccCCc-ccccccc
Confidence 999999999642 2223333332222 221111 1 00124579999999999 9999776
No 150
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.3e-15 Score=160.75 Aligned_cols=123 Identities=35% Similarity=0.586 Sum_probs=104.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhccc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 504 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~ 504 (654)
.+|+++|.||||||||+|+|++....+.++|++|+++..+.+.+++. +++++||||+.+..+...+++.+++..++.||
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~-~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA-KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE-EEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc-EEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 58999999999999999999999888899999999999999999984 89999999999988878888999999999999
Q ss_pred EEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc
Q psy1086 505 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 559 (654)
Q Consensus 505 ~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~ 559 (654)
++++|+|+++ +.+....+..++.........+|.++++||+|..
T Consensus 152 ~il~vvD~~~-----------p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 152 LLFIILDVNK-----------PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEEETTS-----------HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred ccccccccCc-----------cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999983 3455666777777666555678999999999963
No 151
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=1.9e-17 Score=177.30 Aligned_cols=89 Identities=42% Similarity=0.737 Sum_probs=51.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEe---------------------CC--CceEEEEecCCC
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF---------------------DD--FRKMSVADLPGL 482 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~---------------------~~--~~~~~i~DTpG~ 482 (654)
+|+++|.+|+|||||+|+|++.....+++|++|+++..+.+.+ ++ ..++.+|||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 7899999999999999999998755678899999988876432 22 136899999999
Q ss_pred CCCCccccchhHHHHHHhhcccEEEEEEeCCC
Q psy1086 483 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNG 514 (654)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~ 514 (654)
.+..+....+...++.+++.||++++|+|+++
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTC
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 87655555566666678899999999999985
No 152
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.64 E-value=1.4e-15 Score=163.94 Aligned_cols=164 Identities=23% Similarity=0.269 Sum_probs=104.4
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCcc-CCCcc--------------cccceeEEEEeCC----CceEEEEecCCCCC
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIA-SYPFT--------------TIKPNVGVITFDD----FRKMSVADLPGLIE 484 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~-~~~~~--------------t~~~~~~~v~~~~----~~~~~i~DTpG~~~ 484 (654)
..+|+++|+.++|||||+++|++...... .+... +.+.......+.. ...+.+|||||
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG--- 84 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG--- 84 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC---
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC---
Confidence 36899999999999999999998432210 00000 0000000000000 13799999999
Q ss_pred CCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH
Q psy1086 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI 564 (654)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v 564 (654)
++.+...+..+++.+|++++|+|++. ..++.....+...+... ...|+|+|+||+|+.+....
T Consensus 85 ----h~~~~~~~~~~~~~~D~~ilVvda~~---------~~~~~qt~~~~~~~~~~----~~~~iivviNK~Dl~~~~~~ 147 (403)
T 3sjy_A 85 ----HEVLMATMLSGAALMDGAILVVAANE---------PFPQPQTREHFVALGII----GVKNLIIVQNKVDVVSKEEA 147 (403)
T ss_dssp ----CGGGHHHHHHHHTTCSEEEEEEETTS---------CSSCHHHHHHHHHHHHH----TCCCEEEEEECGGGSCHHHH
T ss_pred ----cHHHHHHHHHHHhhCCEEEEEEECCC---------CCCcHHHHHHHHHHHHc----CCCCEEEEEECccccchHHH
Confidence 45577788899999999999999983 22233334444333322 23599999999999876543
Q ss_pred HHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 565 YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+... ++.+.+..+ .....++|++||++|. ||++|++.|.+.+
T Consensus 148 ~~~~~----~i~~~l~~~--------~~~~~~ii~vSA~~g~-gi~~L~~~l~~~l 190 (403)
T 3sjy_A 148 LSQYR----QIKQFTKGT--------WAENVPIIPVSALHKI-NIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHH----HHHHHHTTS--------TTTTCCEEECBTTTTB-SHHHHHHHHHHHS
T ss_pred HHHHH----HHHHHHHhh--------CCCCCEEEEEECCCCc-ChHHHHHHHHHhC
Confidence 33222 222222211 1234579999999999 9999999998755
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.64 E-value=1.2e-15 Score=168.19 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=102.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc-------------------------------cCCCcccccceeEEEEeCCCce
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI-------------------------------ASYPFTTIKPNVGVITFDDFRK 473 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~v~~~~~~~ 473 (654)
.+|+++|++++|||||+++|++..... ...+++|.+.....+...+ ..
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~ 112 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-AN 112 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-CE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-ce
Confidence 589999999999999999998762211 1245778888777777776 48
Q ss_pred EEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy1086 474 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 553 (654)
Q Consensus 474 ~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~ 553 (654)
+.+|||||+ +.+...+..+++.||++++|+|++... .................+. .....|+|||+
T Consensus 113 ~~iiDTPG~-------~~f~~~~~~~~~~aD~~llVvDa~~g~---~~~~~~~~~qt~e~~~~~~----~~~~~~iIvvi 178 (483)
T 3p26_A 113 FTIVDAPGH-------RDFVPNAIMGISQADMAILCVDCSTNA---FESGFDLDGQTKEHMLLAS----SLGIHNLIIAM 178 (483)
T ss_dssp EEEECCCCC-------GGGHHHHHHHHTTCSEEEEEEECCC---------CCCCHHHHHHHHHHH----HTTCCCEEEEE
T ss_pred EEEEECCCc-------HHHHHHHHHhhhhCCEEEEEEECCCCc---cccccchhhhHHHHHHHHH----HcCCCcEEEEE
Confidence 999999995 446777889999999999999998421 0000000011111111111 11235799999
Q ss_pred eCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHH
Q psy1086 554 NKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 613 (654)
Q Consensus 554 NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~ 613 (654)
||+|+.+. ....+++.+.+.++.+... + .....+++++||++|. ||+++.
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g-----~----~~~~~~~i~iSA~~g~-gi~el~ 229 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIG-----F----FEDNINWVPISGFSGE-GVYKIE 229 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHT-----C----CGGGEEEEECCSSSCT-TSSSSC
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcC-----C----CcccceEEEEeeecCC-CccccC
Confidence 99999863 2223333333322211110 0 0124679999999999 998753
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.62 E-value=2.1e-15 Score=153.96 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=89.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCC--------CcccccceeEEEEeCCC-ceEEEEecCCCCCCCccccchh--
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASY--------PFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMG-- 493 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~--------~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~~~~~~~~-- 493 (654)
.+|+++|.+|+|||||+|+|++...+...+ ++++.+.....+..++. ..+.+|||||+.+.......+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 479999999999999999998887766553 33334444444444332 1799999999865533222222
Q ss_pred -----HHHHHHhhc-------------ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeC
Q psy1086 494 -----HQFLRHVER-------------TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNK 555 (654)
Q Consensus 494 -----~~~~~~~~~-------------a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK 555 (654)
.++..|++. +|++++++|.+.. ++ . +.-..+.+++. .++|+|+|+||
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~--~~-----~--~~d~~~l~~l~------~~~pvi~V~nK 153 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH--GL-----K--PLDIEFMKRLH------EKVNIIPLIAK 153 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS--SC-----C--HHHHHHHHHHT------TTSCEEEEESS
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC--CC-----C--HHHHHHHHHHh------ccCCEEEEEec
Confidence 223455554 7899999987631 11 1 11112223331 16899999999
Q ss_pred CCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 556 MDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 556 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+|+....+....... +.+.+.. ..++++++||++++ |++++++.|.+.+
T Consensus 154 ~D~~~~~e~~~~~~~----i~~~l~~-----------~~i~v~~~sa~~~~-~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 154 ADTLTPEECQQFKKQ----IMKEIQE-----------HKIKIYEFPETDDE-EENKLVKKIKDRL 202 (274)
T ss_dssp GGGSCHHHHHHHHHH----HHHHHHH-----------TTCCCCCC------------CHHHHHTC
T ss_pred cCCCCHHHHHHHHHH----HHHHHHH-----------cCCeEEcCCCCCCh-hHHHHHHHHhcCC
Confidence 999866544332222 2222211 23457899999999 9999999988754
No 155
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.62 E-value=1.9e-16 Score=173.20 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=109.7
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhc
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 502 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~ 502 (654)
+.++|+++|+.++|||||+++|.+..+.....+++|.+.....+.+++ ..+.+|||||+.++..... ++++.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~-~~i~~iDTPGhe~f~~~~~-------~~~~~ 74 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN-GMITFLDTPGHAAFTSMRA-------RGAQA 74 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS-SCCCEECCCTTTCCTTSBC-------SSSBS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC-EEEEEEECCCcHHHHHHHH-------HHHhh
Confidence 457899999999999999999998765555567777777666666666 4799999999877654433 55788
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
||++++|+|+++. ... ++.+.+.. + ...+.|+|+|+||+|+.+... ..+.+.+...
T Consensus 75 aD~aILVVda~~g---~~~---qT~e~l~~----~-----~~~~vPiIVviNKiDl~~~~~---------~~v~~~l~~~ 130 (501)
T 1zo1_I 75 TDIVVLVVAADDG---VMP---QTIEAIQH----A-----KAAQVPVVVAVNKIDKPEADP---------DRVKNELSQY 130 (501)
T ss_dssp CSSEEEEEETTTB---SCT---TTHHHHHH----H-----HHTTCCEEEEEECSSSSTTCC---------CCTTCCCCCC
T ss_pred CCEEEEEeecccC---ccH---HHHHHHHH----H-----HhcCceEEEEEEeccccccCH---------HHHHHHHHHh
Confidence 9999999999842 222 23333221 1 124689999999999975310 0011111000
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 618 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~ 618 (654)
.+.++.+....++|++||++|. ||++||+.|..
T Consensus 131 --~~~~~~~~~~~~~v~vSAktG~-gI~eLle~I~~ 163 (501)
T 1zo1_I 131 --GILPEEWGGESQFVHVSAKAGT-GIDELLDAILL 163 (501)
T ss_dssp --CCCTTCCSSSCEEEECCTTTCT-TCTTHHHHTTT
T ss_pred --hhhHHHhCCCccEEEEeeeecc-Ccchhhhhhhh
Confidence 1111111234689999999999 99999999864
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.62 E-value=3.9e-15 Score=166.61 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=100.7
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCcc---------------CCCcccccceeEEEEeCC--C--ceEEEEecCCCCC
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIA---------------SYPFTTIKPNVGVITFDD--F--RKMSVADLPGLIE 484 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~---------------~~~~~t~~~~~~~v~~~~--~--~~~~i~DTpG~~~ 484 (654)
..+|+++|+.++|||||+++|+.....+. ...++|.......+.|.. + ..+.+|||||+.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~- 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV- 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch-
Confidence 46899999999999999999987432111 134667766666666642 1 378999999954
Q ss_pred CCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHH
Q psy1086 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI 564 (654)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v 564 (654)
.+...+.++++.||++++|+|+++ ..+.++...|...+. .+.|+|+|+||+|+.+.+
T Consensus 83 ------dF~~ev~~~l~~aD~aILVVDa~~---------gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~-- 139 (599)
T 3cb4_D 83 ------DFSYEVSRSLAACEGALLVVDAGQ---------GVEAQTLANCYTAME------MDLEVVPVLNKIDLPAAD-- 139 (599)
T ss_dssp ------GGHHHHHHHHHHCSEEEEEEETTT---------CCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--
T ss_pred ------HHHHHHHHHHHHCCEEEEEEECCC---------CCCHHHHHHHHHHHH------CCCCEEEeeeccCccccc--
Confidence 466677889999999999999983 333455555544331 468999999999997643
Q ss_pred HHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 565 YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+..+.+. +.+. ....+++++||++|. ||++||+.|.+.+
T Consensus 140 ~~~v~~ei~---~~lg-----------~~~~~vi~vSAktg~-GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 140 PERVAEEIE---DIVG-----------IDATDAVRCSAKTGV-GVQDVLERLVRDI 180 (599)
T ss_dssp HHHHHHHHH---HHTC-----------CCCTTCEEECTTTCT-THHHHHHHHHHHS
T ss_pred HHHHHHHHH---HHhC-----------CCcceEEEeecccCC-CchhHHHHHhhcC
Confidence 111222222 2211 111248999999999 9999999988765
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.62 E-value=3.4e-15 Score=166.81 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=104.9
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc---------------cCCCcccccceeEEEEeC--CC--ceEEEEecCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI---------------ASYPFTTIKPNVGVITFD--DF--RKMSVADLPGLI 483 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~---------------~~~~~~t~~~~~~~v~~~--~~--~~~~i~DTpG~~ 483 (654)
+..+|+++|+.++|||||+++|+.....+ ....++|.......+.|. ++ ..+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999998742111 013456666666666664 22 368899999954
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE 563 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~ 563 (654)
+ +...+.++++.||++++|+|+++ ....++...|.... ..+.|+|+|+||+|+...+
T Consensus 85 d-------F~~ev~r~l~~aD~aILVVDa~~---------gv~~qt~~~~~~a~------~~~ipiIvviNKiDl~~a~- 141 (600)
T 2ywe_A 85 D-------FSYEVSRALAACEGALLLIDASQ---------GIEAQTVANFWKAV------EQDLVIIPVINKIDLPSAD- 141 (600)
T ss_dssp G-------GHHHHHHHHHTCSEEEEEEETTT---------BCCHHHHHHHHHHH------HTTCEEEEEEECTTSTTCC-
T ss_pred h-------HHHHHHHHHHhCCEEEEEEECCC---------CccHHHHHHHHHHH------HCCCCEEEEEeccCccccC-
Confidence 4 66677789999999999999983 33455555554433 2468999999999997643
Q ss_pred HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 564 IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
..+..+.+ .+.+. ....+++++||++|. ||++||+.|.+.+
T Consensus 142 -~~~v~~el---~~~lg-----------~~~~~vi~vSAktg~-GI~~Lle~I~~~l 182 (600)
T 2ywe_A 142 -VDRVKKQI---EEVLG-----------LDPEEAILASAKEGI-GIEEILEAIVNRI 182 (600)
T ss_dssp -HHHHHHHH---HHTSC-----------CCGGGCEECBTTTTB-SHHHHHHHHHHHS
T ss_pred -HHHHHHHH---HHhhC-----------CCcccEEEEEeecCC-CchHHHHHHHHhc
Confidence 11122222 22210 111248999999999 9999999988765
No 158
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.61 E-value=2.3e-16 Score=172.86 Aligned_cols=159 Identities=20% Similarity=0.246 Sum_probs=99.8
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCc-cccchhHHHHHHhhc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH-RNLGMGHQFLRHVER 502 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~-~~~~~~~~~~~~~~~ 502 (654)
.+|+++|.+|||||||+|+|++.... +.+.+++|.+.....+.+.+ ..+.+|||||+..... ..+.+...+..+++.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS-SCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC-ceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 68999999999999999999998765 45688999998888887776 4899999999863321 234566778889999
Q ss_pred ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccC
Q psy1086 503 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582 (654)
Q Consensus 503 a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 582 (654)
||++++|+|++.. ++ ... ..+.+.+ ...++|++||+||+|+.+... ...++.
T Consensus 103 ad~il~VvD~~~~---~~------~~d-~~l~~~l-----~~~~~pvilV~NK~D~~~~~~-------~~~e~~------ 154 (456)
T 4dcu_A 103 ADVIIFMVNGREG---VT------AAD-EEVAKIL-----YRTKKPVVLAVNKLDNTEMRA-------NIYDFY------ 154 (456)
T ss_dssp CSEEEEEEESSSC---SC------HHH-HHHHHHH-----TTCCSCEEEEEECC----------------CCSG------
T ss_pred CCEEEEEEeCCCC---CC------hHH-HHHHHHH-----HHcCCCEEEEEECccchhhhh-------hHHHHH------
Confidence 9999999998731 11 111 1122222 125799999999999864321 011110
Q ss_pred CCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 583 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 583 ~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
...+...+++||++|. |+.+|++.+.+.+.
T Consensus 155 --------~lg~~~~~~iSA~~g~-gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 155 --------SLGFGEPYPISGTHGL-GLGDLLDAVAEHFK 184 (456)
T ss_dssp --------GGSSSSEEECCTTTCT-THHHHHHHHHTTGG
T ss_pred --------HcCCCceEEeeccccc-chHHHHHHHHhhcc
Confidence 0122346899999999 99999999987653
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.61 E-value=5.3e-15 Score=159.83 Aligned_cols=163 Identities=22% Similarity=0.313 Sum_probs=106.9
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC---ccCCCcccccceeEEEEeC-----------------C-----CceEEEEec
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK---IASYPFTTIKPNVGVITFD-----------------D-----FRKMSVADL 479 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~---~~~~~~~t~~~~~~~v~~~-----------------~-----~~~~~i~DT 479 (654)
.+|+++|+.++|||||+++|++.... ....+++|.+.......+. + ...+.+|||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 58999999999999999999965321 2234666766543333321 1 147999999
Q ss_pred CCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc
Q psy1086 480 PGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 559 (654)
Q Consensus 480 pG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~ 559 (654)
||+ +.+...+...+..+|++++|+|+++. + ...++.+.+..+. .. ...|+|+|+||+|+.
T Consensus 91 PGh-------~~f~~~~~~~~~~~D~~ilVvda~~g---~--~~~qt~e~l~~~~----~~----~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 91 PGH-------EALMTTMLAGASLMDGAILVIAANEP---C--PRPQTREHLMALQ----II----GQKNIIIAQNKIELV 150 (410)
T ss_dssp SSH-------HHHHHHHHHCGGGCSEEEEEEETTSC---S--SCHHHHHHHHHHH----HH----TCCCEEEEEECGGGS
T ss_pred CCh-------HHHHHHHHhhhhhCCEEEEEEECCCC---C--CChhHHHHHHHHH----Hc----CCCcEEEEEECccCC
Confidence 994 44566667778889999999999832 1 1223344433221 11 235899999999998
Q ss_pred ChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 560 GAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 560 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+....... ++++++.+... .....++|++||++|. ||++|++.|.+.+
T Consensus 151 ~~~~~~~~----~~~i~~~l~~~--------~~~~~~~i~vSA~~g~-gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 151 DKEKALEN----YRQIKEFIEGT--------VAENAPIIPISALHGA-NIDVLVKAIEDFI 198 (410)
T ss_dssp CHHHHHHH----HHHHHHHHTTS--------TTTTCCEEECBTTTTB-SHHHHHHHHHHHS
T ss_pred CHHHHHHH----HHHHHHHHHhc--------CcCCCeEEEeeCCCCC-CHHHHHHHHHHhC
Confidence 76432221 22222332211 1234589999999999 9999999998754
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.61 E-value=3.2e-15 Score=167.51 Aligned_cols=176 Identities=20% Similarity=0.230 Sum_probs=106.0
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeC-----------C------CceEEEEecCCCCCCC
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD-----------D------FRKMSVADLPGLIEGA 486 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~-----------~------~~~~~i~DTpG~~~~~ 486 (654)
.++|+++|+.++|||||+++|++..+......++|.+.....+.+. + ...+.+|||||+.++.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4689999999999999999999864422222234433222222221 0 0148999999988776
Q ss_pred ccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh-----
Q psy1086 487 HRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA----- 561 (654)
Q Consensus 487 ~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~----- 561 (654)
.... ++++.||++++|+|+++. + ..++++.+.. +. ..+.|+|+|+||+|+...
T Consensus 85 ~~~~-------r~~~~aD~aILVvDa~~G---v---~~qT~e~l~~----l~-----~~~vPiIVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 85 TLRK-------RGGALADLAILIVDINEG---F---KPQTQEALNI----LR-----MYRTPFVVAANKIDRIHGWRVHE 142 (594)
T ss_dssp TSBC-------SSSBSCSEEEEEEETTTC---C---CHHHHHHHHH----HH-----HTTCCEEEEEECGGGSTTCCCCT
T ss_pred HHHH-------HHHhhCCEEEEEEECCCC---c---cHhHHHHHHH----HH-----HcCCeEEEEeccccccccccccc
Confidence 5443 567889999999999842 1 2334443322 11 246899999999999642
Q ss_pred ------------HHHHHHHHHHHHhhHhhhccCCC---CC-CccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 562 ------------QEIYDGIRDTLHNLKDHIHKYPE---EF-QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 562 ------------~~v~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
..+...+.+.+.++.+.+..... .| ....+....+++++||++|. ||++|++.|...+..
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~-GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE-GIPELLTMLMGLAQQ 218 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC-CchhHHHHHHhhccc
Confidence 11222222222222222211100 00 00011345689999999999 999999999877653
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.61 E-value=1.9e-15 Score=167.42 Aligned_cols=116 Identities=20% Similarity=0.319 Sum_probs=85.4
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc----------------c------CCCcccccceeEEEEeCCCceEEEEecC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI----------------A------SYPFTTIKPNVGVITFDDFRKMSVADLP 480 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~----------------~------~~~~~t~~~~~~~v~~~~~~~~~i~DTp 480 (654)
+..+|+++|++|+|||||+++|+.....+ . ..+++|.......+.+.+ ..+.+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD-YLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-EEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-EEEEEEECC
Confidence 34689999999999999999997322211 0 135677777788888887 489999999
Q ss_pred CCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccC
Q psy1086 481 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG 560 (654)
Q Consensus 481 G~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~ 560 (654)
|+.+ +...+.++++.||++++|+|++. ....+....|. .+. ..++|+++|+||+|+..
T Consensus 91 G~~d-------f~~~~~~~l~~aD~allVvDa~~---------g~~~~t~~~~~-~~~-----~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHAD-------FTEDTYRTLTAVDSALMVIDAAK---------GVEPRTIKLME-VCR-----LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSTT-------CCHHHHHGGGGCSEEEEEEETTT---------CSCHHHHHHHH-HHH-----TTTCCEEEEEECTTSCC
T ss_pred Cchh-------HHHHHHHHHHhCCEEEEEEeCCC---------CCCHHHHHHHH-HHH-----HcCCCEEEEEeCCCCcc
Confidence 9655 44567789999999999999983 23344444442 221 24789999999999975
Q ss_pred h
Q psy1086 561 A 561 (654)
Q Consensus 561 ~ 561 (654)
.
T Consensus 149 ~ 149 (528)
T 3tr5_A 149 R 149 (528)
T ss_dssp S
T ss_pred c
Confidence 3
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.60 E-value=5.5e-15 Score=159.44 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=96.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhc---C----CCcc----------CCCcccccceeEEEEeCCCceEEEEecCCCCCCCc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRA---R----PKIA----------SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~---~----~~~~----------~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~ 487 (654)
.+|+++|+.++|||||+++|++. . .+.. ...++|.+.....+..++ ..+.+|||||+.+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~~~iiDtpG~~~--- 87 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK-RHYSHVDCPGHAD--- 87 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS-CEEEEEECCCSGG---
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC-eEEEEEECCChHH---
Confidence 58999999999999999999884 1 1110 134566666555555554 4899999999643
Q ss_pred cccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHH
Q psy1086 488 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYD 566 (654)
Q Consensus 488 ~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~ 566 (654)
+...+..+++.||++++|+|+++. ...+ ...+...+. ..+.| +|+|+||+|+.++.+..+
T Consensus 88 ----f~~~~~~~~~~aD~~ilVvda~~g---------~~~q-t~~~l~~~~-----~~~ip~iivviNK~Dl~~~~~~~~ 148 (405)
T 2c78_A 88 ----YIKNMITGAAQMDGAILVVSAADG---------PMPQ-TREHILLAR-----QVGVPYIVVFMNKVDMVDDPELLD 148 (405)
T ss_dssp ----GHHHHHHHHTTCSSEEEEEETTTC---------CCHH-HHHHHHHHH-----HTTCCCEEEEEECGGGCCCHHHHH
T ss_pred ----HHHHHHHHHHHCCEEEEEEECCCC---------CcHH-HHHHHHHHH-----HcCCCEEEEEEECccccCcHHHHH
Confidence 566777889999999999999832 1122 223333222 13678 889999999985433322
Q ss_pred HHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCC
Q psy1086 567 GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD 608 (654)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~g 608 (654)
.+.+.+.+ .+..++ + .....+++++||++|. |
T Consensus 149 ~~~~~~~~---~l~~~~--~----~~~~~~~i~~SA~~g~-~ 180 (405)
T 2c78_A 149 LVEMEVRD---LLNQYE--F----PGDEVPVIRGSALLAL-E 180 (405)
T ss_dssp HHHHHHHH---HHHHTT--S----CTTTSCEEECCHHHHH-H
T ss_pred HHHHHHHH---HHHHhc--c----cccCCCEEEccHHHhh-h
Confidence 22222222 221111 0 0113579999999998 7
No 163
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.60 E-value=2.8e-16 Score=167.04 Aligned_cols=218 Identities=18% Similarity=0.206 Sum_probs=138.0
Q ss_pred HHHHHHH-HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHH
Q psy1086 246 HQFLRHV-ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 246 ~~~l~~i-~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~ 324 (654)
+.+++++ ++++++++|+|+.++.. ....++..+ +..+|.++|+||+|+.......+.+.+++
T Consensus 62 ~~~L~~~~~~~~lil~VvD~~d~~~--------------s~~~~l~~~---l~~~piilV~NK~DLl~~~~~~~~~~~~l 124 (369)
T 3ec1_A 62 LSMLHRIGESKALVVNIVDIFDFNG--------------SFIPGLPRF---AADNPILLVGNKADLLPRSVKYPKLLRWM 124 (369)
T ss_dssp HHHHHHHHHHCCEEEEEEETTCSGG--------------GCCSSHHHH---CTTSCEEEEEECGGGSCTTCCHHHHHHHH
T ss_pred HHHHHHhhccCcEEEEEEECCCCCC--------------chhhHHHHH---hCCCCEEEEEEChhcCCCccCHHHHHHHH
Confidence 3455665 56679999999986421 011112222 34789999999999976532222222222
Q ss_pred hccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccccC
Q psy1086 325 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQ 404 (654)
Q Consensus 325 ~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 404 (654)
..... .. ......++.+||+++ .+++++++.+.++..
T Consensus 125 ~~~~~---~~--------g~~~~~v~~iSA~~g-~gi~~L~~~I~~~~~------------------------------- 161 (369)
T 3ec1_A 125 RRMAE---EL--------GLCPVDVCLVSAAKG-IGMAKVMEAINRYRE------------------------------- 161 (369)
T ss_dssp HHHHH---TT--------TCCCSEEEECBTTTT-BTHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHH---Hc--------CCCcccEEEEECCCC-CCHHHHHHHHHhhcc-------------------------------
Confidence 21000 00 000126899999999 999999988865431
Q ss_pred CCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhc------CCCccCCCcccccceeEEEEeCCCceEEEEe
Q psy1086 405 NGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRA------RPKIASYPFTTIKPNVGVITFDDFRKMSVAD 478 (654)
Q Consensus 405 ~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~------~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~D 478 (654)
..+++++|.+|+|||||+|+|++. ....+..|++|.+... +.++. .+.++|
T Consensus 162 -------------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~--~~~liD 218 (369)
T 3ec1_A 162 -------------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPLES--GATLYD 218 (369)
T ss_dssp -------------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EECST--TCEEEE
T ss_pred -------------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEeCC--CeEEEe
Confidence 136899999999999999999987 3445678888877654 33443 479999
Q ss_pred cCCCCCCCccccchhHHHHHHh---hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeC
Q psy1086 479 LPGLIEGAHRNLGMGHQFLRHV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNK 555 (654)
Q Consensus 479 TpG~~~~~~~~~~~~~~~~~~~---~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK 555 (654)
|||+.........+....+.++ +..+.+++++|.... ..+....+ +. .....+.|+++++||
T Consensus 219 tPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~------------l~--~l~~~~~~~~~v~~k 283 (369)
T 3ec1_A 219 TPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQT-LFFGGLAR------------LD--YIKGGRRSFVCYMAN 283 (369)
T ss_dssp CCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEE-EEETTTEE------------EE--EEESSSEEEEEEECT
T ss_pred CCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCce-EEECCEEE------------EE--EccCCCceEEEEecC
Confidence 9999876544433444455566 788999999998411 00000000 00 012246799999999
Q ss_pred CCccCh
Q psy1086 556 MDVEGA 561 (654)
Q Consensus 556 ~Dl~~~ 561 (654)
+|..+.
T Consensus 284 ~d~~~~ 289 (369)
T 3ec1_A 284 ELTVHR 289 (369)
T ss_dssp TSCEEE
T ss_pred Cccccc
Confidence 998754
No 164
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=2e-15 Score=148.17 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=80.4
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc---cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI---ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV 500 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~---~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~ 500 (654)
..+|+++|++|+|||||+++|++..+.. ...++++.+. .. ..+.+|||||+.+ +...+..++
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~-~~~~l~Dt~G~~~-------~~~~~~~~~ 76 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DG-SGVTLVDFPGHVK-------LRYKLSDYL 76 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GG-SSCEEEECCCCGG-------GTHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eC-ceEEEEECCCcHH-------HHHHHHHHH
Confidence 3689999999999999999999976533 2334333332 22 3789999999744 334455666
Q ss_pred hc----ccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccChH
Q psy1086 501 ER----TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQ 562 (654)
Q Consensus 501 ~~----a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~~ 562 (654)
+. +|++++|+|++. ++.+++....|..++..... ...+.|++||+||+|+...+
T Consensus 77 ~~~~~~~~~~i~v~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTV--------DPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHGGGEEEEEEEEETTS--------CTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HhccccCCEEEEEEECCC--------ChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 65 999999999972 33455655555555432211 22479999999999998653
No 165
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.60 E-value=8.2e-15 Score=153.73 Aligned_cols=90 Identities=39% Similarity=0.718 Sum_probs=74.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC----------------ceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF----------------RKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~----------------~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|.+|+|||||+|+|++......++|++|.++..+.+.+++. ..+.+|||||+.++.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 58999999999999999999998866778999999999998888763 26999999999987765
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCC
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNG 514 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~ 514 (654)
..++...++.+++.||++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 56677778899999999999999985
No 166
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.60 E-value=4.8e-15 Score=160.01 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=96.7
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCC---ccCCCcccccceeEEEEe---------------C--C-----CceEEEEe
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPK---IASYPFTTIKPNVGVITF---------------D--D-----FRKMSVAD 478 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~---~~~~~~~t~~~~~~~v~~---------------~--~-----~~~~~i~D 478 (654)
..+|+++|+.++|||||+++|++.... ....+++|.+.......+ + + ...+.+||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 358999999999999999999965321 123466676554332221 1 1 14799999
Q ss_pred cCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCc
Q psy1086 479 LPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDV 558 (654)
Q Consensus 479 TpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl 558 (654)
|||+ +.+...+...+..+|++++|+|+++. + ...++.+.+..| ... ...|+|+|+||+|+
T Consensus 88 tPGh-------~~f~~~~~~~~~~~D~~ilVvda~~g---~--~~~qt~e~l~~~----~~l----~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 88 SPGH-------ETLMATMLSGASLMDGAILVIAANEP---C--PQPQTKEHLMAL----EIL----GIDKIIIVQNKIDL 147 (408)
T ss_dssp CSSH-------HHHHHHHHTTCSCCSEEEEEEETTSC---S--SCHHHHHHHHHH----HHT----TCCCEEEEEECTTS
T ss_pred CCCH-------HHHHHHHHHhHhhCCEEEEEEECCCC---C--CCchhHHHHHHH----HHc----CCCeEEEEEEccCC
Confidence 9994 44555666667788999999999832 1 122334443322 111 23589999999999
Q ss_pred cChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 559 EGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 559 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
.+........ +++++.+... .....++|++||++|. ||++|++.|.+.+
T Consensus 148 ~~~~~~~~~~----~~i~~~l~~~--------~~~~~~~i~vSA~~g~-gi~~L~~~l~~~i 196 (408)
T 1s0u_A 148 VDEKQAEENY----EQIKEFVKGT--------IAENAPIIPISAHHEA-NIDVLLKAIQDFI 196 (408)
T ss_dssp SCTTTTTTHH----HHHHHHHTTS--------TTTTCCEEEC-------CHHHHHHHHHHHS
T ss_pred CCHHHHHHHH----HHHHHHHhhc--------CCCCCeEEEeeCCCCC-CHHHHHHHHHHhC
Confidence 8654211111 1122222111 1234579999999999 9999999998754
No 167
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.59 E-value=3e-15 Score=158.14 Aligned_cols=89 Identities=42% Similarity=0.783 Sum_probs=80.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC--------------------CccEEEEecCccccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD--------------------FRKMSVADLPGLIEG 237 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~--------------------~~~~~i~D~PGl~~~ 237 (654)
+|+|||+||||||||+|+|++..+.+++|||+|+.|+.|.+.+++ ...+.++||||+.++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~ 82 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKG 82 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccc
Confidence 689999999999999999999888889999999999999987642 135899999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhcccC
Q psy1086 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNG 266 (654)
Q Consensus 238 ~~~~~~l~~~~l~~i~~~~~il~vvd~~~ 266 (654)
++.+.+++.+|+.++..+|++++|+|+.+
T Consensus 83 a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 83 AHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 98888999999999999999999999975
No 168
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.59 E-value=8.4e-15 Score=154.66 Aligned_cols=90 Identities=41% Similarity=0.770 Sum_probs=78.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCC--------------------ceEEEEecCCCCC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--------------------RKMSVADLPGLIE 484 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~--------------------~~~~i~DTpG~~~ 484 (654)
.+|+++|.+|+|||||+|++++......++|++|.++..+.+.+++. ..+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 47899999999999999999998766678899999999888766431 2699999999998
Q ss_pred CCccccchhHHHHHHhhcccEEEEEEeCCC
Q psy1086 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNG 514 (654)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~ 514 (654)
+.+..+++...++.+++.||++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 887777788899999999999999999985
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.59 E-value=7.7e-15 Score=157.76 Aligned_cols=163 Identities=16% Similarity=0.153 Sum_probs=103.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcC------CCc----------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRAR------PKI----------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~------~~~----------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|++.. .+. ....++|.+.....+..++ ..+.+|||||+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~~~iiDtpG~~----- 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA-RHYAHTDCPGHA----- 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS-CEEEEEECSSHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC-eEEEEEECCChH-----
Confidence 589999999999999999998741 010 0134566665444444444 489999999953
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~ 567 (654)
.+...+..+++.||++++|+|+++. ...++...| ..+. ..+.| +|+|+||+|+.++.+..+.
T Consensus 78 --~f~~~~~~~~~~aD~~ilVvda~~g---------~~~qt~e~l-~~~~-----~~~vp~iivviNK~Dl~~~~~~~~~ 140 (397)
T 1d2e_A 78 --DYVKNMITGTAPLDGCILVVAANDG---------PMPQTREHL-LLAR-----QIGVEHVVVYVNKADAVQDSEMVEL 140 (397)
T ss_dssp --HHHHHHHHTSSCCSEEEEEEETTTC---------SCHHHHHHH-HHHH-----HTTCCCEEEEEECGGGCSCHHHHHH
T ss_pred --HHHHHHHhhHhhCCEEEEEEECCCC---------CCHHHHHHH-HHHH-----HcCCCeEEEEEECcccCCCHHHHHH
Confidence 3556677888999999999999832 122222222 2221 13678 6899999999854333222
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCC----------hHHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD----------VNDAKLKIRSIL 620 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~g----------v~el~~~i~~~~ 620 (654)
+.+...+ .+..++ +. ....+++++||++|. | |.+|++.|.+.+
T Consensus 141 ~~~~~~~---~l~~~~--~~----~~~~~~i~~SA~~g~-n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 141 VELEIRE---LLTEFG--YK----GEETPIIVGSALCAL-EQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHH---HHHHTT--SC----TTTSCEEECCHHHHH-TTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHH---HHHHcC--CC----cccCcEEEeehhhcc-cccCCCccCCcHHHHHHHHHHhC
Confidence 2222222 221111 00 113579999999976 5 778888776644
No 170
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.59 E-value=1.3e-14 Score=154.13 Aligned_cols=152 Identities=11% Similarity=0.102 Sum_probs=106.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccE
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 505 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~ 505 (654)
+|+++|+.++|||||+++|+ ..++|.+.....+.+++ ..+.+|||||+.+ +...+..+++.||+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~-~~i~iiDtPGh~~-------f~~~~~~~~~~aD~ 86 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG-RNMVFVDAHSYPK-------TLKSLITALNISDI 86 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS-SEEEEEECTTTTT-------CHHHHHHHHHTCSE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC-eEEEEEECCChHH-------HHHHHHHHHHHCCE
Confidence 89999999999999999998 34667777777777766 4799999999644 55666788899999
Q ss_pred EEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCE-EEEEe-CCCccChHHHHHHHHHHHHhhHhhhccCC
Q psy1086 506 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPI-ILLVN-KMDVEGAQEIYDGIRDTLHNLKDHIHKYP 583 (654)
Q Consensus 506 ~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~-iiv~N-K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 583 (654)
+++|+| +.. . ......+...+. ..+.|. |+|+| |+|+ +...+. .. .+++++.+....
T Consensus 87 ailVvd-~~g---~-------~~qt~e~~~~~~-----~~~i~~~ivvvNNK~Dl-~~~~~~-~~---~~~i~~~l~~~~ 145 (370)
T 2elf_A 87 AVLCIP-PQG---L-------DAHTGECIIALD-----LLGFKHGIIALTRSDST-HMHAID-EL---KAKLKVITSGTV 145 (370)
T ss_dssp EEEEEC-TTC---C-------CHHHHHHHHHHH-----HTTCCEEEEEECCGGGS-CHHHHH-HH---HHHHHHHTTTST
T ss_pred EEEEEc-CCC---C-------cHHHHHHHHHHH-----HcCCCeEEEEEEeccCC-CHHHHH-HH---HHHHHHHHHhcC
Confidence 999999 631 1 122222322222 135777 99999 9999 543222 11 222333332211
Q ss_pred CCCCccccccccceEE--Eeeec---CCCChHHHHHHHHHHHHHH
Q psy1086 584 EEFQPEKVIKFQSILP--ISAKT---NSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 584 ~~~~~~~~~~~~~~~~--vSAkt---g~~gv~el~~~i~~~~~~~ 623 (654)
....++++ +||++ |. ||++|++.|.+.+...
T Consensus 146 --------~~~~~ii~~~~SA~~~~~g~-gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 146 --------LQDWECISLNTNKSAKNPFE-GVDELKARINEVAEKI 181 (370)
T ss_dssp --------TTTCEEEECCCCTTSSSTTT-THHHHHHHHHHHHHHH
T ss_pred --------CCceEEEecccccccCcCCC-CHHHHHHHHHhhcccc
Confidence 13458999 99999 99 9999999998876543
No 171
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.59 E-value=3.1e-15 Score=155.30 Aligned_cols=166 Identities=23% Similarity=0.300 Sum_probs=115.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCcccccc---cccccchHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA---HRNLGMGHQFLRHVE 253 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~---~~~~~l~~~~l~~i~ 253 (654)
.|+++|.||||||||+|+|+|.+.. +.+++.||.....+.+......++.++||||+.... ..+..+.......+.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~ 91 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLE 91 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhh
Confidence 4899999999999999999998776 468899999999999888734689999999987543 111223344556677
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCcc-chHhHHHHHHHHHhccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE-GAQEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~-~~~~~~~~l~~~~~~l~~~i~ 332 (654)
.+|++++|+|++.. ....+...... .+.. ...|.++|+||+|+. ......+.+....+...
T Consensus 92 ~aD~il~VvD~~~~---------~~~~~~~~~~~---~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~---- 153 (308)
T 3iev_A 92 EADVILFMIDATEG---------WRPRDEEIYQN---FIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP---- 153 (308)
T ss_dssp HCSEEEEEEETTTB---------SCHHHHHHHHH---HTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT----
T ss_pred cCCEEEEEEeCCCC---------CCchhHHHHHH---HHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc----
Confidence 88899999998731 11122211111 1111 468999999999997 44433333332222110
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.+..++++||+++ .|++++++.+.+.++.
T Consensus 154 ------------~~~~i~~vSA~~g-~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 154 ------------ELTEIVPISALKG-ANLDELVKTILKYLPE 182 (308)
T ss_dssp ------------TCCCEEECBTTTT-BSHHHHHHHHHHHSCB
T ss_pred ------------CCCeEEEEeCCCC-CCHHHHHHHHHHhCcc
Confidence 1236899999999 9999999999877643
No 172
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.58 E-value=1.7e-15 Score=158.98 Aligned_cols=112 Identities=36% Similarity=0.632 Sum_probs=85.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC----------------ccEEEEecCcccccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF----------------RKMSVADLPGLIEGAHR 240 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~----------------~~~~i~D~PGl~~~~~~ 240 (654)
.+|+|||.||||||||+|+|++..+.+++|||+|+.|+.|.+.+++. ..+.++||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 47999999999999999999999888899999999999999988652 36899999999999888
Q ss_pred cccchHHHHHHHHHHHHHHHhhcccCcccCCCC--CccChHHHHHHHHHHH
Q psy1086 241 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH--PKRSCVETVLLLNKEL 289 (654)
Q Consensus 241 ~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~--~~~~~~~~l~~~~~el 289 (654)
+.+++.+|+.+++++|++++|+|+++.. .+.+ ...+|++++..+..|+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~-~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFEND-DIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC----------CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCC-ceeeecCCcChHHHHHHHHHHH
Confidence 8889999999999999999999997521 0000 1135666666655555
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=3.3e-15 Score=155.53 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccC------CC---cccccc----------------------------------
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIAS------YP---FTTIKP---------------------------------- 461 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~------~~---~~t~~~---------------------------------- 461 (654)
++|+++|.+|+|||||+|+|++..+.... .| .++..+
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHHH
Confidence 68999999999999999999998763221 22 111110
Q ss_pred ----------------eeEEEEeCCCceEEEEecCCCCCCC------ccccchhHHHHHHhhcccEEEEEEeCCCcccCC
Q psy1086 462 ----------------NVGVITFDDFRKMSVADLPGLIEGA------HRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGL 519 (654)
Q Consensus 462 ----------------~~~~v~~~~~~~~~i~DTpG~~~~~------~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~ 519 (654)
....+...+...+.+|||||+.+.. .....+...+..+++.+|++++|+|++.. ++
T Consensus 105 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~--~~ 182 (315)
T 1jwy_B 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT--DL 182 (315)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS--CS
T ss_pred HHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc--ch
Confidence 0001122233479999999987522 11223567778899999999999998521 12
Q ss_pred CCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH-HHHHHHHHHHhhHhhhccCCCCCCccccccccceE
Q psy1086 520 KHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSIL 598 (654)
Q Consensus 520 ~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (654)
...+ ...+..++ ...+.|+++|+||+|+..... ..+. +......+ ...+.+++
T Consensus 183 ~~~~------~~~i~~~~-----~~~~~~~i~v~NK~Dl~~~~~~~~~~-------~~~~~~~~--------~~~~~~v~ 236 (315)
T 1jwy_B 183 ANSD------ALQLAKEV-----DPEGKRTIGVITKLDLMDKGTDAMEV-------LTGRVIPL--------TLGFIGVI 236 (315)
T ss_dssp TTCS------HHHHHHHH-----CSSCSSEEEEEECTTSSCSSCCCHHH-------HTTSSSCC--------TTCEEECC
T ss_pred hhhH------HHHHHHHh-----CCCCCcEEEEEcCcccCCcchHHHHH-------HhCCCccC--------CCCeEEEe
Confidence 1111 11122222 224789999999999975433 1111 11111000 02234566
Q ss_pred EEeeec---CCCChHHHHHHHHHHHHH
Q psy1086 599 PISAKT---NSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 599 ~vSAkt---g~~gv~el~~~i~~~~~~ 622 (654)
++||++ +. |+.++++.+.+.+..
T Consensus 237 ~~sa~~~~~~~-gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 237 NRSQEDIIAKK-SIRESLKSEILYFKN 262 (315)
T ss_dssp CCCHHHHSSSC-CHHHHHHHHHHHHHT
T ss_pred cCChhhhccCC-CHHHHHHHHHHHHhC
Confidence 677777 77 999999998887764
No 174
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.58 E-value=3.5e-16 Score=167.48 Aligned_cols=115 Identities=36% Similarity=0.597 Sum_probs=61.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeC---------------------C--CccEEEEecCcc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD---------------------D--FRKMSVADLPGL 234 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~---------------------~--~~~~~i~D~PGl 234 (654)
+|+|||.||||||||+|+|++....+++|||||..|..|.+.+. + ..++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 58999999999999999999988777899999999999976431 1 136899999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHHhhcccCcc-cCCCC-CccChHHHHHHHHHHHHHH
Q psy1086 235 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQ-LGLKH-PKRSCVETVLLLNKELELY 292 (654)
Q Consensus 235 ~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~-l~~~~-~~~~~~~~l~~~~~el~~~ 292 (654)
..+++...+++.+++.++..+|++++|+|+.... ..... ...+|+.++..+..|+..+
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~ 141 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW 141 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 9888777788888888888999999999997420 00000 0125666666555555433
No 175
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.1e-15 Score=165.73 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=105.8
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCccC-------------------------------CCcccccceeEEEEeCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKIAS-------------------------------YPFTTIKPNVGVITFDDF 471 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~-------------------------------~~~~t~~~~~~~v~~~~~ 471 (654)
...+|+++|++++|||||+++|++....+.. .+++|.+.....+.+.+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~- 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence 4569999999999999999999976443221 26788888888888876
Q ss_pred ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcc--cCCCCCccchHHHHHHHHHHHHHhhcccCC-CC
Q psy1086 472 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQ--LGLKHPKRSCVETVLLLNKELELYKMNLLE-KP 548 (654)
Q Consensus 472 ~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~-~p 548 (654)
..+.+|||||+. .+...+..+++.||++++|+|++... .++.. ..+..+.+ .... ..+ .|
T Consensus 245 ~~~~iiDTPG~e-------~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~-~~qt~e~l-------~~~~--~lgi~~ 307 (611)
T 3izq_1 245 ANFTIVDAPGHR-------DFVPNAIMGISQADMAILCVDCSTNAFESGFDL-DGQTKEHM-------LLAS--SLGIHN 307 (611)
T ss_dssp CEEEEEECCSSS-------CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCT-TSHHHHHH-------HHHH--TTTCCE
T ss_pred ceEEEEECCCCc-------ccHHHHHHHHhhcCceEEEEECCCCcccccchh-hhHHHHHH-------HHHH--HcCCCe
Confidence 489999999964 46667778899999999999998310 01100 01111111 1111 123 45
Q ss_pred EEEEEeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHH
Q psy1086 549 IILLVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 613 (654)
Q Consensus 549 ~iiv~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~ 613 (654)
+|||+||+|+.+. ....+++.+.+..+.... + + .....++|+|||++|. ||+++.
T Consensus 308 iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~---g--~----~~~~~~~i~vSA~tG~-gI~el~ 363 (611)
T 3izq_1 308 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDI---G--F----FEDNINWVPISGFSGE-GVYKIE 363 (611)
T ss_dssp EEEEEECTTTTTTCHHHHHHHHHHHHHHHHHH---T--C----CGGGCEEEECCTTTCT-TTSSCT
T ss_pred EEEEEecccccchhHHHHHHHHHHHHHHHHhh---c--c----cccCccEEeeecccCC-CccccC
Confidence 9999999999863 222233332222221111 0 0 0124579999999999 999764
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=2.9e-14 Score=138.97 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=99.9
Q ss_pred eeecccceEEEEcCCCCChhhHHHHHHhcCCCc--cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccc---cchh
Q psy1086 419 LELKLIADIGLVGFPNAGKSTFLKAISRARPKI--ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN---LGMG 493 (654)
Q Consensus 419 l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~--~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~---~~~~ 493 (654)
|.+..+.+|+++|++|+|||||++++++..+.. ...++++.. .+.+.+++ .+.+|||||+....... ..+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD--GKRLVDLPGYGYAEVPEEMKRKWQ 96 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET--TEEEEECCCCC------CCHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC--CEEEEECcCCcccccCHHHHHHHH
Confidence 677888999999999999999999999875321 234444443 23444544 58899999985432111 1122
Q ss_pred HHHHHHh---hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHH
Q psy1086 494 HQFLRHV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRD 570 (654)
Q Consensus 494 ~~~~~~~---~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~ 570 (654)
.....++ +.++++++|+|++.. .+... ..+..++. ..+.|.++|+||+|+....+....+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~---------~~~~~-~~~~~~~~-----~~~~~~~~v~nK~D~~s~~~~~~~~~~ 161 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHP---------LKDLD-QQMIEWAV-----DSNIAVLVLLTKADKLASGARKAQLNM 161 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC---------CCHHH-HHHHHHHH-----HTTCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccEEEEEEECCCC---------CchhH-HHHHHHHH-----HcCCCeEEEEecccCCCchhHHHHHHH
Confidence 2222333 578999999999832 11111 11122221 246899999999998865332111111
Q ss_pred HHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 571 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
+...+... .....++++||+++. |++++++.|.+.+.+.
T Consensus 162 ----~~~~~~~~---------~~~~~~~~~Sal~~~-~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 162 ----VREAVLAF---------NGDVQVETFSSLKKQ-GVDKLRQKLDTWFSEM 200 (210)
T ss_dssp ----HHHHHGGG---------CSCEEEEECBTTTTB-SHHHHHHHHHHHHC--
T ss_pred ----HHHHHHhc---------CCCCceEEEeecCCC-CHHHHHHHHHHHHhhc
Confidence 11111110 112467999999999 9999999998877553
No 177
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.56 E-value=5.2e-16 Score=164.74 Aligned_cols=219 Identities=19% Similarity=0.230 Sum_probs=132.4
Q ss_pred HHHHHHHHHHH-HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHH
Q psy1086 246 HQFLRHVERTK-LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 246 ~~~l~~i~~~~-~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~ 324 (654)
+.+++++.+.+ ++++|+|+.+. .. ....++..+ +..+|.++|+||+|+.......+.+.+++
T Consensus 60 ~~~l~~i~~~~~~il~VvD~~d~-----------~~---~~~~~l~~~---~~~~p~ilV~NK~DL~~~~~~~~~~~~~l 122 (368)
T 3h2y_A 60 LRILNGIGKSDALVVKIVDIFDF-----------NG---SWLPGLHRF---VGNNKVLLVGNKADLIPKSVKHDKVKHWM 122 (368)
T ss_dssp HHHHHHHHHSCCEEEEEEETTSH-----------HH---HCCTTHHHH---SSSSCEEEEEECGGGSCTTSCHHHHHHHH
T ss_pred HHHHHHHhccCcEEEEEEECCCC-----------cc---cHHHHHHHH---hCCCcEEEEEEChhcCCcccCHHHHHHHH
Confidence 34555665554 88999999732 11 122223322 34789999999999975432222232222
Q ss_pred hccccccccCCCccchhhhccc--ceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCccc
Q psy1086 325 HNLKDHIHKYPEEFQPEKVIKF--QSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGN 402 (654)
Q Consensus 325 ~~l~~~i~~~~~~~~~~~~~~~--~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 402 (654)
..... ..++ ..++.+||+++ .|++++++.+.++..
T Consensus 123 ~~~~~-------------~~g~~~~~v~~iSA~~g-~gi~~L~~~l~~~~~----------------------------- 159 (368)
T 3h2y_A 123 RYSAK-------------QLGLKPEDVFLISAAKG-QGIAELADAIEYYRG----------------------------- 159 (368)
T ss_dssp HHHHH-------------HTTCCCSEEEECCTTTC-TTHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHH-------------HcCCCcccEEEEeCCCC-cCHHHHHhhhhhhcc-----------------------------
Confidence 21100 0011 26899999999 999999988765320
Q ss_pred cCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcC-------CCccCCCcccccceeEEEEeCCCceEE
Q psy1086 403 AQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRAR-------PKIASYPFTTIKPNVGVITFDDFRKMS 475 (654)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~-------~~~~~~~~~t~~~~~~~v~~~~~~~~~ 475 (654)
+.+++++|.+|+|||||+|+|++.. ...+..|++|.+... +.+++ .+.
T Consensus 160 ---------------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~--~~~ 214 (368)
T 3h2y_A 160 ---------------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPLDE--ESS 214 (368)
T ss_dssp ---------------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EESSS--SCE
T ss_pred ---------------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEecC--CeE
Confidence 1368999999999999999999863 223567888877654 34444 379
Q ss_pred EEecCCCCCCCccccchhHHHHHH---hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 476 VADLPGLIEGAHRNLGMGHQFLRH---VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 476 i~DTpG~~~~~~~~~~~~~~~~~~---~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
++||||+.+.......+....+.+ ....+.+++++|.... ..+....+ +. .....+.|++++
T Consensus 215 liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~------------~d--~l~~~~~~~~~v 279 (368)
T 3h2y_A 215 LYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQT-LFFSGLAR------------FD--YVSGGRRAFTCH 279 (368)
T ss_dssp EEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEE-EEETTTEE------------EE--EEESSSEEEEEE
T ss_pred EEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCE-EEEcceEE------------EE--EecCCCceEEEE
Confidence 999999987654444444444444 2577888999987311 00000000 00 012246799999
Q ss_pred EeCCCccChHHH
Q psy1086 553 VNKMDVEGAQEI 564 (654)
Q Consensus 553 ~NK~Dl~~~~~v 564 (654)
+||+|..+..++
T Consensus 280 ~nk~d~~~~~~~ 291 (368)
T 3h2y_A 280 FSNRLTIHRTKL 291 (368)
T ss_dssp ECTTSCEEEEEH
T ss_pred ecCccccccccH
Confidence 999998765433
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=5.3e-14 Score=161.21 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=106.3
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccC-CCcc--------------cccc---------------------------
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIAS-YPFT--------------TIKP--------------------------- 461 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~-~~~~--------------t~~~--------------------------- 461 (654)
..+|+++|.+|+|||||+|+|++......+ .|+| |+.+
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 468999999999999999999998765543 3443 1110
Q ss_pred ------------eeEEEEeCCC---ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccch
Q psy1086 462 ------------NVGVITFDDF---RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSC 526 (654)
Q Consensus 462 ------------~~~~v~~~~~---~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~ 526 (654)
....+.++.. ..+.+|||||+.+.. .....+..+++.||++++|+|++. ..+
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----~~~~~~~~~i~~aD~vL~Vvda~~---------~~s 215 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----ARNELSLGYVNNCHAILFVMRASQ---------PCT 215 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----TCHHHHTHHHHSSSEEEEEEETTS---------TTC
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----hHHHHHHHHHHhCCEEEEEEeCCC---------ccc
Confidence 0001111110 258999999986532 134566789999999999999983 233
Q ss_pred HHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH--------HHH---HHHHHHHH-hhHhhhccCCCCCCccccccc
Q psy1086 527 VETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--------EIY---DGIRDTLH-NLKDHIHKYPEEFQPEKVIKF 594 (654)
Q Consensus 527 ~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~--------~v~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 594 (654)
......|.+.+ ...+.|+++|+||+|+.... ... ..+.+.+. .+.+....++ | ....
T Consensus 216 ~~e~~~l~~~l-----~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g--~----~~~~ 284 (695)
T 2j69_A 216 LGERRYLENYI-----KGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEG--Q----NIYD 284 (695)
T ss_dssp HHHHHHHHHHT-----TTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSS--C----BCGG
T ss_pred hhHHHHHHHHH-----HhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccc--c----ccCC
Confidence 44444443332 12367999999999987543 111 11111111 1111110000 0 0123
Q ss_pred cceEEEeee--------------cCCCChHHHHHHHHHHHH
Q psy1086 595 QSILPISAK--------------TNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 595 ~~~~~vSAk--------------tg~~gv~el~~~i~~~~~ 621 (654)
.++|+|||+ +|. |+++|++.+.+.+.
T Consensus 285 ~~v~~vSAk~al~~~~~~~~~~~~~~-Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 285 ERVFELSSIQALRRRLKNPQADLDGT-GFPKFMDSLNTFLT 324 (695)
T ss_dssp GTEEECCHHHHHHHHHHCTTCCCTTS-SHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHhhccCchhhhhcc-CHHHHHHHHHHHHH
Confidence 468999999 999 99999999988664
No 179
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.56 E-value=4.8e-14 Score=153.40 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=98.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCcc-----------CC----------------------CcccccceeEEEEeCCC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIA-----------SY----------------------PFTTIKPNVGVITFDDF 471 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~-----------~~----------------------~~~t~~~~~~~v~~~~~ 471 (654)
.+|+++|+.++|||||+++|++...... .. .++|.+.....+..++
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~- 103 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK- 103 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS-
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC-
Confidence 5899999999999999999987642110 01 2445554444455554
Q ss_pred ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCC-CEE
Q psy1086 472 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEK-PII 550 (654)
Q Consensus 472 ~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~-p~i 550 (654)
.++.+|||||+. .+...+..+++.||++++|+|++.. ...+. ..+...+.. .+. |+|
T Consensus 104 ~~~~iiDtpGh~-------~f~~~~~~~~~~aD~~ilVvDa~~g---------~~~qt-~~~l~~~~~-----~~~~~iI 161 (434)
T 1zun_B 104 RKFIIADTPGHE-------QYTRNMATGASTCDLAIILVDARYG---------VQTQT-RRHSYIASL-----LGIKHIV 161 (434)
T ss_dssp EEEEEEECCCSG-------GGHHHHHHHHTTCSEEEEEEETTTC---------SCHHH-HHHHHHHHH-----TTCCEEE
T ss_pred ceEEEEECCChH-------HHHHHHHHHHhhCCEEEEEEECCCC---------CcHHH-HHHHHHHHH-----cCCCeEE
Confidence 479999999954 4566677889999999999999832 11111 222222211 234 699
Q ss_pred EEEeCCCccCh-HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHH
Q psy1086 551 LLVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLK 615 (654)
Q Consensus 551 iv~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~ 615 (654)
+|+||+|+.+. .+..+.+.+.+.+ .+..++.. ....+++++||++|. ||+++|+.
T Consensus 162 vviNK~Dl~~~~~~~~~~i~~~~~~---~~~~~g~~------~~~~~~i~vSA~~g~-gi~~~~~~ 217 (434)
T 1zun_B 162 VAINKMDLNGFDERVFESIKADYLK---FAEGIAFK------PTTMAFVPMSALKGD-NVVNKSER 217 (434)
T ss_dssp EEEECTTTTTSCHHHHHHHHHHHHH---HHHTTTCC------CSEEEEEECCTTTCT-TTSSCCTT
T ss_pred EEEEcCcCCcccHHHHHHHHHHHHH---HHHHhCCC------ccCceEEEEeccCCC-Cccccccc
Confidence 99999999763 2222222222222 22221100 123578999999999 99986654
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.56 E-value=2.8e-14 Score=144.64 Aligned_cols=125 Identities=11% Similarity=0.153 Sum_probs=88.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh--h
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV--E 501 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~--~ 501 (654)
.+|+++|.+|+|||||+++|++... .....+++|.......+.+++ ..+.+|||||+.++....+........++ .
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~ 115 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-FTINIIDTPGLVEAGYVNHQALELIKGFLVNR 115 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-EEEEEEECCCSEETTEECHHHHHHHHHHTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-eeEEEEECCCCCCcccchHHHHHHHHHHHhcC
Confidence 5899999999999999999999876 445678888888888888877 48999999999887655543333333333 2
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 559 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~ 559 (654)
.+|++++|+|++.. ...+.-..|.+++..........|+++|+||+|+.
T Consensus 116 ~~~~il~V~~~d~~---------~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 116 TIDVLLYVDRLDVY---------AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECEEEEEEESSCS---------CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCEEEEEEcCCCC---------CCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 78999999998631 11112223444444332222235999999999985
No 181
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.55 E-value=8e-15 Score=137.49 Aligned_cols=154 Identities=27% Similarity=0.470 Sum_probs=98.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc--ccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN--LGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~--~~l~~~~l~~i~~~ 255 (654)
+|+|+|+||||||||+++|++....+..+|++|..+..+.+.+++ ..+.++||||+....... ..+...+++. ..+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~ 82 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIIN-EKP 82 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-EEEEEEECCCCSCSSSSSHHHHHHHHHHHH-HCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-cEEEEEECCCcccCCCcchhHHHHHHHHhc-CCC
Confidence 699999999999999999999877778889889999999988876 579999999986542211 1111222211 235
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l~~~i~ 332 (654)
+++++++|.... +....+..++ .. ...|.++|.||+|+...... .+.+.+..
T Consensus 83 ~~~i~v~D~~~~------------~~~~~~~~~~---~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------- 137 (165)
T 2wji_A 83 DLVVNIVDATAL------------ERNLYLTLQL---ME--MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-------- 137 (165)
T ss_dssp SEEEEEEETTCH------------HHHHHHHHHH---HH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------
T ss_pred CEEEEEecCCch------------hHhHHHHHHH---Hh--cCCCEEEEEEchHhccccChhhHHHHHHHHh--------
Confidence 667777777521 1111111222 11 36899999999998643211 12222111
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ .|++++++.+.+.+
T Consensus 138 ------------~-~~~~~~SA~~~-~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 138 ------------G-VKVVPLSAAKK-MGIEELKKAISIAV 163 (165)
T ss_dssp ------------T-SCEEECBGGGT-BSHHHHHHHHHHHT
T ss_pred ------------C-CCEEEEEcCCC-CCHHHHHHHHHHHh
Confidence 1 25899999999 99999999887654
No 182
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.55 E-value=9e-15 Score=146.87 Aligned_cols=168 Identities=14% Similarity=0.172 Sum_probs=105.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCc--cccccceEEEEeCCCccEEEEecCccccccccc-ccchHHHHHHH--
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPF--TTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN-LGMGHQFLRHV-- 252 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~--tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~-~~l~~~~l~~i-- 252 (654)
+|+|||.+|||||||+|+|++....+..+++ +|..+..+.+.+++ ..+.++||||+....... ..+...+.+++
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~ 101 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLL 101 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999999988877765 88899999888876 589999999997544332 33334444444
Q ss_pred --HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH--hHH-----HHHHHH
Q psy1086 253 --ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EIY-----DGIRDT 323 (654)
Q Consensus 253 --~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~--~~~-----~~l~~~ 323 (654)
..++++++|+|+..+ ...+...+......+...+...|.+++.||+|+.... +.+ +.+.+.
T Consensus 102 ~~~~~d~il~V~d~~~~----------~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l 171 (247)
T 3lxw_A 102 SAPGPHALLLVTQLGRF----------TAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALREL 171 (247)
T ss_dssp HTTCCSEEEEEEETTBC----------CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH
T ss_pred cCCCCCEEEEEEeCCCC----------CHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHH
Confidence 556688888888632 1222233333333444555678999999999996531 111 112222
Q ss_pred HhccccccccCCCccchhhhcccceEEEeec-----ccCccchHHHHHHHHHHHHHh
Q psy1086 324 LHNLKDHIHKYPEEFQPEKVIKFQSILPISA-----KTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 324 ~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA-----~~~~~~i~~L~~~i~~~l~~~ 375 (654)
++... ..++.+++ ..+ .++.+|++.|.+++...
T Consensus 172 ~~~~g------------------~~~~~~~~~~~~~~~~-~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 172 VAECG------------------GRVCAFDNRATGREQE-AQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHHTT------------------TCEEECCTTCCHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred HHHcC------------------CeEEEEeCCCCccccH-HHHHHHHHHHHHHHHHc
Confidence 22211 12333332 236 79999999999888753
No 183
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.54 E-value=2.4e-14 Score=155.80 Aligned_cols=163 Identities=16% Similarity=0.228 Sum_probs=97.6
Q ss_pred cceEEEEcCCCCChhhHHHHHHhc--CCCc-----------------------------cCCCcccccceeEEEEeCCCc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRA--RPKI-----------------------------ASYPFTTIKPNVGVITFDDFR 472 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~--~~~~-----------------------------~~~~~~t~~~~~~~v~~~~~~ 472 (654)
..+|+++|+.++|||||+++|++. .+.. ...+++|.+.....+.+++ .
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-~ 84 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-Y 84 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-C
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-e
Confidence 358999999999999999999875 2210 0145677777766777766 4
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhh--cccCC-CCE
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK--MNLLE-KPI 549 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~~~-~p~ 549 (654)
++.+|||||+.+ +...+..+++.||++++|+|++ + .+++....|..+...+. ....+ .|+
T Consensus 85 ~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~---------~-gsfe~~~~~~~qt~~~~~~~~~~~~~~i 147 (435)
T 1jny_A 85 FFTIIDAPGHRD-------FVKNMITGASQADAAILVVSAK---------K-GEYEAGMSVEGQTREHIILAKTMGLDQL 147 (435)
T ss_dssp EEEECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECS---------T-THHHHHHSTTCHHHHHHHHHHHTTCTTC
T ss_pred EEEEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECC---------C-CccccccccchHHHHHHHHHHHcCCCeE
Confidence 899999999544 5666778899999999999998 3 34554333222221111 11124 468
Q ss_pred EEEEeCCCccCh---HHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHH
Q psy1086 550 ILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 614 (654)
Q Consensus 550 iiv~NK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~ 614 (654)
|+|+||+|+.+. .+..+.+.+.+ ++.+..++ |. ....+++++||++|. ||.++++
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~i---~~~~~~~~--~~----~~~~~~i~iSA~~g~-~v~e~~~ 205 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQV---SKFMRSYG--FN----TNKVRFVPVVAPSGD-NITHKSE 205 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHHH---HHHHHHTT--CC----CTTCEEEECBTTTTB-TTTBCCS
T ss_pred EEEEEcccCCCccccHHHHHHHHHHH---HHHHHHcC--CC----cCCceEEEeecccCc-ccccccc
Confidence 999999999862 22222222222 22221111 00 113579999999999 9986654
No 184
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.54 E-value=1.7e-15 Score=152.81 Aligned_cols=154 Identities=23% Similarity=0.408 Sum_probs=108.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccc------cccchHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR------NLGMGHQFLR 250 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~------~~~l~~~~l~ 250 (654)
.+|+|+|.||||||||+|+|+|....+.++|++|.....+.+.+++ ..+.++||||....... ...+...++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT-EEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC-eEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 4799999999999999999999988888999999999999999877 48999999998765421 1112222221
Q ss_pred HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhcc
Q psy1086 251 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNL 327 (654)
Q Consensus 251 ~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l 327 (654)
. ..+|++++|+|++.. +....+..++. . ...|.++++||+|+...... .+.+.+.+.
T Consensus 81 ~-~~~d~vi~VvDas~~------------~~~~~l~~~l~----~-~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-- 140 (256)
T 3iby_A 81 D-LEYDCIINVIDACHL------------ERHLYLTSQLF----E-LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-- 140 (256)
T ss_dssp H-SCCSEEEEEEEGGGH------------HHHHHHHHHHT----T-SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--
T ss_pred h-CCCCEEEEEeeCCCc------------hhHHHHHHHHH----H-cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--
Confidence 1 457788888888631 11111222211 1 47899999999998654321 222222221
Q ss_pred ccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 328 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.+++++||+++ .|++++++.+.+.
T Consensus 141 -------------------~~vi~~SA~~g-~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 -------------------CSVIPIQAHKN-IGIPALQQSLLHC 164 (256)
T ss_dssp -------------------SCEEECBGGGT-BSHHHHHHHHHTC
T ss_pred -------------------CCEEEEECCCC-CCHHHHHHHHHhh
Confidence 26899999999 9999999998764
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.53 E-value=2.1e-14 Score=152.03 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=97.4
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc------cCCCc----------------------cccc----------------
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI------ASYPF----------------------TTIK---------------- 460 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~------~~~~~----------------------~t~~---------------- 460 (654)
++|+++|.+|+|||||+|+|++..+.. ...|+ +|.+
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 689999999999999999999987641 12233 2221
Q ss_pred -------ceeEEEEeCCCceEEEEecCCCCCCCc----c--ccchhHHHHHHhhccc-EEEEEEeCCCcccCCCCCccch
Q psy1086 461 -------PNVGVITFDDFRKMSVADLPGLIEGAH----R--NLGMGHQFLRHVERTK-LIAMIVDVNGFQLGLKHPKRSC 526 (654)
Q Consensus 461 -------~~~~~v~~~~~~~~~i~DTpG~~~~~~----~--~~~~~~~~~~~~~~a~-~~ilV~D~~~~~~~~~~~~~~~ 526 (654)
.....+...+...+.+|||||+.+... . .+.+...+..|++.++ ++++|+|++. .+...
T Consensus 112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~---~~~~~---- 184 (353)
T 2x2e_A 112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS---DLANS---- 184 (353)
T ss_dssp TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS---CGGGC----
T ss_pred CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC---ccchh----
Confidence 001112222234799999999876321 1 1235566677887665 5555666652 11111
Q ss_pred HHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHH-HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecC
Q psy1086 527 VETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 605 (654)
Q Consensus 527 ~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg 605 (654)
....+..++ ...+.|+|+|+||+|+.+... .... +. ... .. + ...+.+++++||++|
T Consensus 185 --~~~~i~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~~~~----~~---~~~--~~--l----~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 185 --DALKVAKEV-----DPQGQRTIGVITKLDLMDEGTDARDV----LE---NKL--LP--L----RRGYIGVVNRSQKDI 242 (353)
T ss_dssp --HHHHHHHHH-----CTTCTTEEEEEECGGGSCTTCCCHHH----HT---TCS--SC--C----TTCEEECCCCCHHHH
T ss_pred --HHHHHHHHh-----CcCCCceEEEeccccccCcchhHHHH----Hh---CCc--cc--c----cCCceEEEeCCcccc
Confidence 111122222 224789999999999976432 1111 11 000 00 0 013457899999999
Q ss_pred CCChHHHHHHHHH
Q psy1086 606 STDVNDAKLKIRS 618 (654)
Q Consensus 606 ~~gv~el~~~i~~ 618 (654)
. |+++|++.+.+
T Consensus 243 ~-~i~~l~~~l~~ 254 (353)
T 2x2e_A 243 D-GKKDITAALAA 254 (353)
T ss_dssp H-TTCCHHHHHHH
T ss_pred c-ccccHHHHHHH
Confidence 9 99999999876
No 186
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.53 E-value=2.4e-14 Score=156.60 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCcc-------------------------C------CCcccccceeEEEEeCCCce
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIA-------------------------S------YPFTTIKPNVGVITFDDFRK 473 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~-------------------------~------~~~~t~~~~~~~v~~~~~~~ 473 (654)
.+|+++|+.++|||||+++|++...... + ..++|.+.....+..++ ..
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-~~ 86 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-YQ 86 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-EE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-ce
Confidence 5899999999999999999987521000 0 25678777777777766 48
Q ss_pred EEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchH----HHHHHHHHHHHHhhcccCCCC-
Q psy1086 474 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCV----ETVLLLNKELELYKMNLLEKP- 548 (654)
Q Consensus 474 ~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~----e~~~~~~~~l~~~~~~~~~~p- 548 (654)
+.+|||||+. .+...+..+++.||++++|+|+++.. ...+| ++...+ ..+ ...+.|
T Consensus 87 ~~iiDtPGh~-------~f~~~~~~~~~~aD~~ilVvda~~g~------~~~sf~~~~qt~~~~-~~~-----~~~~v~~ 147 (458)
T 1f60_A 87 VTVIDAPGHR-------DFIKNMITGTSQADCAILIIAGGVGE------FEAGISKDGQTREHA-LLA-----FTLGVRQ 147 (458)
T ss_dssp EEEEECCCCT-------THHHHHHHSSSCCSEEEEEEECSHHH------HHHHTCTTSHHHHHH-HHH-----HHTTCCE
T ss_pred EEEEECCCcH-------HHHHHHHhhhhhCCEEEEEEeCCcCc------cccccCcchhHHHHH-HHH-----HHcCCCe
Confidence 9999999953 46667778899999999999998311 00011 111111 111 113555
Q ss_pred EEEEEeCCCccC-hHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHH
Q psy1086 549 IILLVNKMDVEG-AQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 613 (654)
Q Consensus 549 ~iiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~ 613 (654)
+|+|+||+|+.+ +.+..+.+.+.+.++.+.. + |. ....+++++||++|. ||.++.
T Consensus 148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~---g--~~----~~~~~~i~vSA~~g~-nv~~~~ 203 (458)
T 1f60_A 148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKV---G--YN----PKTVPFVPISGWNGD-NMIEAT 203 (458)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHH---T--CC----GGGCCEEECCTTTCB-TTTBCC
T ss_pred EEEEEEccccccCCHHHHHHHHHHHHHHHHHc---C--CC----ccCceEEEeecccCc-Cccccc
Confidence 899999999984 2222222222222221111 0 00 113579999999999 998654
No 187
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.53 E-value=3.4e-15 Score=147.00 Aligned_cols=172 Identities=20% Similarity=0.163 Sum_probs=105.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC--CCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccc------cchHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRAR--PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL------GMGHQF 248 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~--~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~------~l~~~~ 248 (654)
.+|+|+|.+|||||||++.|++.. ..+.+++++|.......+...+...+.++||||+........ .+...+
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 109 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSY 109 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHH
Confidence 479999999999999999999975 356788888888776666533345799999999754321111 111122
Q ss_pred HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHH---HHHHHh
Q psy1086 249 LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDG---IRDTLH 325 (654)
Q Consensus 249 l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~---l~~~~~ 325 (654)
++....++++++|+|.... .. . . ..++..+... ...|.++|+||+|+......... +.+.+.
T Consensus 110 ~~~~~~~d~vi~v~d~~~~-------~~-~-~-----~~~~~~~l~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~ 174 (223)
T 4dhe_A 110 LQTRPQLCGMILMMDARRP-------LT-E-L-----DRRMIEWFAP-TGKPIHSLLTKCDKLTRQESINALRATQKSLD 174 (223)
T ss_dssp HHHCTTEEEEEEEEETTSC-------CC-H-H-----HHHHHHHHGG-GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred HhcCcCcCEEEEEEeCCCC-------CC-H-H-----HHHHHHHHHh-cCCCEEEEEeccccCChhhHHHHHHHHHHHHH
Confidence 2222224557888887631 01 1 1 1111111111 56899999999999876543222 222222
Q ss_pred ccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 326 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 326 ~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
...... .....+++++||+++ .|++++++.|.+.+...
T Consensus 175 ~~~~~~-----------~~~~~~~~~~SA~~g-~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 175 AYRDAG-----------YAGKLTVQLFSALKR-TGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHT-----------CCSCEEEEEEBTTTT-BSHHHHHHHHHHHHC--
T ss_pred hhhhcc-----------cCCCCeEEEeecCCC-cCHHHHHHHHHHhcCcc
Confidence 110000 001237899999999 99999999998877543
No 188
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.51 E-value=5.3e-15 Score=166.33 Aligned_cols=168 Identities=19% Similarity=0.251 Sum_probs=83.8
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc-------------------------------cCCCcccccceeEEEEeCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI-------------------------------ASYPFTTIKPNVGVITFDDF 471 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~v~~~~~ 471 (654)
...+|+++|+.++|||||+++|++....+ ...+++|++.....+.+++
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~- 254 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK- 254 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC-
Confidence 34689999999999999999997531110 1156788888877777776
Q ss_pred ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcc--cCCCCCccchHHHHHHHHHHHHHhhcccCCCC-
Q psy1086 472 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQ--LGLKHPKRSCVETVLLLNKELELYKMNLLEKP- 548 (654)
Q Consensus 472 ~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p- 548 (654)
..+.||||||+.++.... ..+++.||++|+|+|++... .++.. ..++.+.+.. +. ..+.|
T Consensus 255 ~~i~iiDTPGh~~f~~~~-------~~~~~~aD~alLVVDa~~g~~e~gi~~-~~qt~e~l~~----~~-----~lgip~ 317 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGM-------IAGASSADFAVLVVDSSQNNFERGFLE-NGQTREHAYL----LR-----ALGISE 317 (592)
T ss_dssp ----CCEEESSSEEEEEC-------CC-------CCSEEEEEECCSSTTSCS-CSSHHHHHHH----HH-----HSSCCC
T ss_pred eEEEEEECCChHHHHHHH-------HHHHhhCCEEEEEEECCCCcccccccc-chHHHHHHHH----HH-----HcCCCe
Confidence 489999999987654333 25678999999999998421 12210 1122222211 11 13455
Q ss_pred EEEEEeCCCccCh-HHHHHHHHHHHHhhHhhh-ccCCCCCCccccccccceEEEeeecCCCChH--------------HH
Q psy1086 549 IILLVNKMDVEGA-QEIYDGIRDTLHNLKDHI-HKYPEEFQPEKVIKFQSILPISAKTNSTDVN--------------DA 612 (654)
Q Consensus 549 ~iiv~NK~Dl~~~-~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~--------------el 612 (654)
+|||+||+|+.+. ......+.+.+. +.+ ...+ + ....++++++||++|. ||. +|
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~el~---~~l~~~~g--~----~~~~~~ii~iSA~~G~-gI~e~~~~~~~~w~~g~~L 387 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNIVS---DFLIKMVG--F----KTSNVHFVPISAISGT-NLIQKDSSDLYKWYKGPTL 387 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHH---HHHTTTSC--C----CGGGEEEEEECSSSCS-SSCSCCCCGGGGTCCSCCH
T ss_pred EEEEEeccccccccHHHHHHHHHHHH---HHHHHhhC--C----CccceEEEEEecccCc-ccccccccccccccchHHH
Confidence 8999999999762 333333333232 222 1111 1 0123579999999999 998 67
Q ss_pred HHHHHH
Q psy1086 613 KLKIRS 618 (654)
Q Consensus 613 ~~~i~~ 618 (654)
++.|..
T Consensus 388 le~l~~ 393 (592)
T 3mca_A 388 LSALDQ 393 (592)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776654
No 189
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.51 E-value=1.2e-14 Score=159.42 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=88.8
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc-------------------------c------CCCcccccceeEEEEeCCCc
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI-------------------------A------SYPFTTIKPNVGVITFDDFR 472 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~-------------------------~------~~~~~t~~~~~~~v~~~~~~ 472 (654)
..+|+++|+.++|||||+++|+...... . ...++|++.....+.+++ .
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~-~ 121 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-R 121 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-E
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC-e
Confidence 3589999999999999999997532111 0 134677777666777775 5
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcc--cCCCCCccchHHHHHHHHHHHHHhhcccCCCC-E
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQ--LGLKHPKRSCVETVLLLNKELELYKMNLLEKP-I 549 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~ 549 (654)
++.+|||||+.+ +...+..+++.||++++|+|+++.. .+|... .+..+.+ ... ...+.| +
T Consensus 122 ~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~-~qt~e~l-------~~~--~~~~vp~i 184 (467)
T 1r5b_A 122 RFSLLDAPGHKG-------YVTNMINGASQADIGVLVISARRGEFEAGFERG-GQTREHA-------VLA--RTQGINHL 184 (467)
T ss_dssp EEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTT-CCHHHHH-------HHH--HHTTCSSE
T ss_pred EEEEEECCCcHH-------HHHHHHhhcccCCEEEEEEeCCcCccccccCCC-CcHHHHH-------HHH--HHcCCCEE
Confidence 899999999655 3444557889999999999998431 111110 1112211 111 123577 9
Q ss_pred EEEEeCCCccC---hHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHH
Q psy1086 550 ILLVNKMDVEG---AQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 614 (654)
Q Consensus 550 iiv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~ 614 (654)
|||+||+|+.. +.+..+.+.+.+.+ .+... ..|. .....+++++||++|. ||+++|+
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e~~~---~l~~~-~g~~---~~~~~~~i~vSA~~g~-~i~~l~~ 244 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDKLSM---FLRRV-AGYN---SKTDVKYMPVSAYTGQ-NVKDRVD 244 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHHHHH---HHHHH-HCCC---HHHHEEEEECBTTTTB-TTSSCCC
T ss_pred EEEEECccCCCccccHHHHHHHHHHHHH---HHHHh-cCCC---ccCCceEEeccccccc-ccccccc
Confidence 99999999964 12222222222221 11110 0000 0013579999999999 9998763
No 190
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.51 E-value=4.1e-15 Score=140.64 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=105.9
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccc-hHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGM-GHQFLRHVE 253 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l-~~~~l~~i~ 253 (654)
+.+|+|+|+||||||||+++|++... .+.++|++|.....+.+.+++ ..+.++||||+.+.......+ ....+.++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 34799999999999999999998764 467889999998889998876 479999999986432211111 112234566
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
.++.+++|+|++... .... . .+..++.... ....|.++|+||+|+..... . ...
T Consensus 83 ~ad~~i~v~D~~~~~------s~~~-~---~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~----------~---~~~- 136 (172)
T 2gj8_A 83 QADRVLFMVDGTTTD------AVDP-A---EIWPEFIARL--PAKLPITVVRNKADITGETL----------G---MSE- 136 (172)
T ss_dssp TCSEEEEEEETTTCC------CCSH-H---HHCHHHHHHS--CTTCCEEEEEECHHHHCCCC----------E---EEE-
T ss_pred hCCEEEEEEECCCCC------CHHH-H---HHHHHHHHhc--ccCCCEEEEEECccCCcchh----------h---hhh-
Confidence 677888888886421 0111 1 1112222211 13589999999999853210 0 000
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.....++++||+++ .+++++++.+.+.+.
T Consensus 137 ----------~~~~~~~~~SA~~g-~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 137 ----------VNGHALIRLSARTG-EGVDVLRNHLKQSMG 165 (172)
T ss_dssp ----------ETTEEEEECCTTTC-TTHHHHHHHHHHHC-
T ss_pred ----------ccCCceEEEeCCCC-CCHHHHHHHHHHHhh
Confidence 01136899999999 999999999887654
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.7e-14 Score=133.55 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=77.2
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc---cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhh
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI---ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 501 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~---~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~ 501 (654)
.+|+++|.+|+|||||++++++..+.. ...++++.+. .+ ..+.+|||||+.++... ....+...+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~-~~~~l~Dt~G~~~~~~~---~~~~~~~~~~ 117 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DG-SGVTLVDFPGHVKLRYK---LSDYLKTRAK 117 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CC-TTCSEEEETTCCBSSCC---HHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cC-CeEEEEECCCCchHHHH---HHHHHHhhcc
Confidence 589999999999999999999976533 1233333222 33 37899999998765422 1222223344
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhc--ccCCCCEEEEEeCCCccChHH
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQE 563 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--~~~~~p~iiv~NK~Dl~~~~~ 563 (654)
.+|++++|+|++. +..+++.+..|..++..... ...+.|++||+||+|+.+.+.
T Consensus 118 ~~~~~i~v~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 118 FVKGLIFMVDSTV--------DPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GEEEEEEEEETTC--------CHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCC--------CchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 5999999999972 34566666666555432211 224789999999999976543
No 192
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.50 E-value=5.4e-15 Score=137.23 Aligned_cols=158 Identities=22% Similarity=0.303 Sum_probs=98.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|+|||||++.+.+.... ...++.+|..+....+.+++ ..+.++|+||..........+...+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-ceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 47899999999999999999987654 56788888888888888776 47999999998654321111223334445667
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++++|.... ..... .++..+... ...|.++|+||+|+....+... . ..
T Consensus 81 ~~~i~v~d~~~~--------~~~~~------~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~-------~---~~---- 131 (161)
T 2dyk_A 81 EVVLFAVDGRAE--------LTQAD------YEVAEYLRR-KGKPVILVATKVDDPKHELYLG-------P---LY---- 131 (161)
T ss_dssp SEEEEEEESSSC--------CCHHH------HHHHHHHHH-HTCCEEEEEECCCSGGGGGGCG-------G---GG----
T ss_pred CEEEEEEECCCc--------ccHhH------HHHHHHHHh-cCCCEEEEEECcccccchHhHH-------H---HH----
Confidence 788888888631 01111 111111111 4689999999999975421111 0 00
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
..++..++++||+++ .|++++++.+.+.+
T Consensus 132 -------~~~~~~~~~~Sa~~~-~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 132 -------GLGFGDPIPTSSEHA-RGLEELLEAIWERL 160 (161)
T ss_dssp -------GGSSCSCEECBTTTT-BSHHHHHHHHHHHC
T ss_pred -------hCCCCCeEEEecccC-CChHHHHHHHHHhC
Confidence 111225899999999 99999999887653
No 193
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=143.77 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=81.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCC--ccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYP--FTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~--~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+|+|++|||||||+|+|+|.......++ ++|..+..+.+.+++ ..+.++||||+.+.......+...+.+.+..+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 109 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPGIFDTEVPNAETSKEIIRCILLT 109 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEEEEEECCSCC-----CHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceEEEEECCCccCCCCCHHHHHHHHHHHHHhc
Confidence 799999999999999999999888777777 788888888888876 58999999999876554444445555555443
Q ss_pred ----HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh
Q psy1086 256 ----KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE 315 (654)
Q Consensus 256 ----~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~ 315 (654)
+++++|+|+... .. .....+...+..+... ..+|.++|+||+|+.....
T Consensus 110 ~~~~~~~l~v~d~~~~--------~~--~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~ 162 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRY--------TE--EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTN 162 (239)
T ss_dssp TTCCSEEEEEEETTCC--------SS--HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----
T ss_pred CCCCcEEEEEeeCCCC--------CH--HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCccc
Confidence 677888887532 11 2223333333333332 4569999999999876543
No 194
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.50 E-value=1e-13 Score=161.71 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=98.6
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcC------CC----c------cCCCcccccceeEEEEeCCCceEEEEecCCCCCCCcc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRAR------PK----I------ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~------~~----~------~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~ 488 (654)
.+|+++|+.++|||||+++|++.. .+ . ....++|.+.....+...+ ..+.+|||||+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~-~kI~IIDTPGHe----- 370 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPT-RHYAHVDCPGHA----- 370 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSS-CEEEEEECCCHH-----
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCC-EEEEEEECCChH-----
Confidence 589999999999999999998741 00 0 1245666666554555444 589999999954
Q ss_pred ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCccChHHHHHH
Q psy1086 489 NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYDG 567 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p-~iiv~NK~Dl~~~~~v~~~ 567 (654)
.+...+..+++.+|++++|+|+++. ... ++.+.+ ..+.. .++| +|||+||+|+.++.+..+.
T Consensus 371 --dF~~~mi~gas~AD~aILVVDAtdG---v~~---QTrEhL----~ll~~-----lgIP~IIVVINKiDLv~d~e~le~ 433 (1289)
T 3avx_A 371 --DYVKNMITGAAQMDGAILVVAATDG---PMP---QTREHI----LLGRQ-----VGVPYIIVFLNKCDMVDDEELLEL 433 (1289)
T ss_dssp --HHHHHHHHTSCCCSEEEEEEETTTC---SCT---THHHHH----HHHHH-----HTCSCEEEEEECCTTCCCHHHHHH
T ss_pred --HHHHHHHHHHhhCCEEEEEEcCCcc---CcH---HHHHHH----HHHHH-----cCCCeEEEEEeecccccchhhHHH
Confidence 4566677888999999999999842 222 222222 22211 2578 7899999999864433332
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCC-------ChHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNST-------DVNDAKLKIRSI 619 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~-------gv~el~~~i~~~ 619 (654)
+.+.+.+ .+..++ + .....+++++||++|.. ||++|++.|.+.
T Consensus 434 i~eEi~e---lLk~~G--~----~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 434 VEMEVRE---LLSQYD--F----PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHHH---HHHHTT--S----CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH---HHHhcc--c----cccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 2222222 221111 0 01235799999999931 466777766553
No 195
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.50 E-value=1.5e-14 Score=147.14 Aligned_cols=153 Identities=24% Similarity=0.406 Sum_probs=104.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccc--cccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR--NLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~--~~~l~~~~l~~i~~~ 255 (654)
+|+|+|.||||||||+|+|+|....+.+||++|..+..|.+.. + ..+.++||||....... ...+...++.. +.+
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~-~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~ 81 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N-KDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRA 81 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C-TTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C-CeEEEEECCCcCccCCCChHHHHHHHHHhc-CCC
Confidence 6999999999999999999998888999999999999888765 3 57999999998654321 11122222211 236
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l~~~i~ 332 (654)
|++++|+|++.. +....+..++. . ...|.++++||+|+...... .+.+.+.+
T Consensus 82 d~vi~V~D~t~~------------e~~~~~~~~l~---~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-------- 136 (272)
T 3b1v_A 82 DSILNVVDATNL------------ERNLYLTTQLI---E--TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-------- 136 (272)
T ss_dssp SEEEEEEEGGGH------------HHHHHHHHHHH---H--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------
T ss_pred CEEEEEecCCch------------HhHHHHHHHHH---h--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------
Confidence 677788887631 11111222221 1 47899999999998643211 12222211
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ +|++++++.+.+.+
T Consensus 137 ------------g-~~vi~~SA~~g-~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 137 ------------G-VPVVATSALKQ-TGVDQVVKKAAHTT 162 (272)
T ss_dssp ------------T-SCEEECBTTTT-BSHHHHHHHHHHSC
T ss_pred ------------C-CCEEEEEccCC-CCHHHHHHHHHHHH
Confidence 1 26899999999 99999999987543
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.50 E-value=3.5e-13 Score=153.77 Aligned_cols=118 Identities=21% Similarity=0.231 Sum_probs=83.6
Q ss_pred eeecccceEEEEcCCCCChhhHHHHHHhcCCCcc------------C------CCcccccceeEEEEeCCCceEEEEecC
Q psy1086 419 LELKLIADIGLVGFPNAGKSTFLKAISRARPKIA------------S------YPFTTIKPNVGVITFDDFRKMSVADLP 480 (654)
Q Consensus 419 l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~------------~------~~~~t~~~~~~~v~~~~~~~~~i~DTp 480 (654)
+.+.++.+|+++|++|+|||||+++|++...... + ..++|.......+.+.+ ..+.+||||
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~~nliDTp 82 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAP 82 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC-EEEEEEeCC
Confidence 3456678999999999999999999996543211 0 23556666666777765 479999999
Q ss_pred CCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc
Q psy1086 481 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 559 (654)
Q Consensus 481 G~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~ 559 (654)
|+. .+...+..+++.+|++++|+|++.. + ..+.. .+...+. ..+.|+|+|+||+|+.
T Consensus 83 G~~-------~f~~~~~~~l~~ad~~ilVvD~~~g---~------~~qt~-~~~~~~~-----~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 83 GYG-------DFVGEIRGALEAADAALVAVSAEAG---V------QVGTE-RAWTVAE-----RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSG-------GGHHHHHHHHHHCSEEEEEEETTTC---S------CHHHH-HHHHHHH-----HTTCCEEEEEECGGGC
T ss_pred Ccc-------chHHHHHHHHhhcCcEEEEEcCCcc---c------chhHH-HHHHHHH-----HccCCEEEEecCCchh
Confidence 954 4566778999999999999998732 1 12222 2222222 1368999999999987
No 197
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.50 E-value=4.3e-14 Score=149.57 Aligned_cols=169 Identities=23% Similarity=0.353 Sum_probs=101.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHH---HHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQ---FLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~---~l~~i~~ 254 (654)
.|+|+|+||||||||+|+|++....+.+++++|+++..+.+.+++ ..+.++||||++..... .+... .+..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~i~~lp~--~lve~f~~tl~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIRGIPP--QIVDAFFVTLSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEECCCBCSSCCG--GGHHHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEeCCCchhcCCH--HHHHHHHHHHHHHHh
Confidence 399999999999999999999888778999999999999999987 57999999998653211 12222 2334455
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH--hHHHHHHHHHhccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ--EIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~--~~~~~l~~~~~~l~~~i~ 332 (654)
+|++++|+|++.. .......+......+..+ .+...|.++|.||+|+.... ............+.
T Consensus 258 aD~il~VvD~s~~-------~~~~~~~~~~~~~~L~~l--~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~---- 324 (364)
T 2qtf_A 258 SDALILVIDSTFS-------ENLLIETLQSSFEILREI--GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY---- 324 (364)
T ss_dssp SSEEEEEEETTSC-------HHHHHHHHHHHHHHHHHH--TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC----
T ss_pred CCEEEEEEECCCC-------cchHHHHHHHHHHHHHHh--CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc----
Confidence 6778888887631 000111222222222222 12578999999999997532 11111111111110
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.....++++||+++ .+++++++.|.+.+..
T Consensus 325 -----------~~~~~~~~~SA~~g-~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 325 -----------SPIFDVIPISALKR-TNLELLRDKIYQLATQ 354 (364)
T ss_dssp -----------SCEEEEEECBTTTT-BSHHHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEECCCC-cCHHHHHHHHHHHhcc
Confidence 00025789999999 9999999999876654
No 198
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.50 E-value=8.3e-15 Score=151.29 Aligned_cols=159 Identities=23% Similarity=0.290 Sum_probs=107.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecCcccccccc-cccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~-~~~l~~~~l~~i~~~ 255 (654)
.|+|||.||||||||+|+|.+.+..+ .+.|.||.....+.+...+ .++.++||||+...... +..+.......+..+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-RQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-cEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 59999999999999999999987764 5678899988888777655 58999999998653221 111223334455667
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHH-HHhHhhcCcceeEeecccCccchHh-HHHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE-LYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~-~~~~~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~ 333 (654)
|++++|+|++.. .... ...+. .+.......|.++|+||+|+..... ..+ ..+.+
T Consensus 88 d~il~VvD~~~~--------~~~~------~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~----~~~~~------ 143 (301)
T 1wf3_A 88 NAVVWVVDLRHP--------PTPE------DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMK----AYHEL------ 143 (301)
T ss_dssp SEEEEEEETTSC--------CCHH------HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHH----HHHHT------
T ss_pred CEEEEEEECCCC--------CChH------HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHH----HHHHh------
Confidence 888899998631 1111 11111 1111112689999999999976543 222 22211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
..+..++++||+++ .+++++++.+.+.+
T Consensus 144 ----------~~~~~~~~iSA~~g-~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 144 ----------LPEAEPRMLSALDE-RQVAELKADLLALM 171 (301)
T ss_dssp ----------STTSEEEECCTTCH-HHHHHHHHHHHTTC
T ss_pred ----------cCcCcEEEEeCCCC-CCHHHHHHHHHHhc
Confidence 01236899999999 99999999887654
No 199
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.50 E-value=1e-14 Score=148.70 Aligned_cols=155 Identities=25% Similarity=0.429 Sum_probs=108.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc--ccchHHHHHHH---
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN--LGMGHQFLRHV--- 252 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~--~~l~~~~l~~i--- 252 (654)
+|+|+|.+|||||||+|+|+|....+.++|++|..+..+.+.+.+ ..+.++||||........ ..+...+.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS-CEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC-CceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 689999999999999999999887788999999999999998876 479999999987644211 12222222222
Q ss_pred HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh---HHHHHHHHHhcccc
Q psy1086 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE---IYDGIRDTLHNLKD 329 (654)
Q Consensus 253 ~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~---~~~~l~~~~~~l~~ 329 (654)
+.+|++++|+|++.. +....+..++.. ...|.++|+||+|+..... ..+.+.+.+.
T Consensus 84 ~~~d~ii~VvD~~~~------------~~~~~~~~~l~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg---- 142 (274)
T 3i8s_A 84 GDADLLINVVDASNL------------ERNLYLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIEIDALSARLG---- 142 (274)
T ss_dssp TCCSEEEEEEEGGGH------------HHHHHHHHHHHH-----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT----
T ss_pred cCCCEEEEEecCCCh------------HHHHHHHHHHHh-----cCCCEEEEEECccchhhhhHHHHHHHHHHhcC----
Confidence 456778888888631 122122222221 3789999999999865432 1222222221
Q ss_pred ccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 330 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 330 ~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+++++||+++ .|++++++.+.+.+
T Consensus 143 -----------------~~~i~~SA~~g-~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 143 -----------------CPVIPLVSTRG-RGIEALKLAIDRYK 167 (274)
T ss_dssp -----------------SCEEECCCGGG-HHHHHHHHHHHTCC
T ss_pred -----------------CCEEEEEcCCC-CCHHHHHHHHHHHH
Confidence 26899999999 99999998887544
No 200
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.49 E-value=2.6e-13 Score=138.12 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=86.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHh--h
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV--E 501 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~--~ 501 (654)
.+|+++|.+|+|||||+|+|++..+. ....+++|.......+..++ ..+.+|||||+.++......+...+..++ +
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 118 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-FTLNIIDTPGLIEGGYINDMALNIIKSFLLDK 118 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-EEEEEEECCCSEETTEECHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC-eEEEEEECCCCCCCccchHHHHHHHHHHhhcC
Confidence 48999999999999999999998764 35567777777776677665 58999999999876544433333333332 4
Q ss_pred cccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChH
Q psy1086 502 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ 562 (654)
Q Consensus 502 ~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~ 562 (654)
.+|++++|+|++.. .+ . +.-..|...+..........|+++|+||+|+...+
T Consensus 119 ~~d~il~v~~~d~~--~~-----~--~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 119 TIDVLLYVDRLDAY--RV-----D--NLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp EECEEEEEEESSCC--CC-----C--HHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCEEEEEEeCCCC--cC-----C--HHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 79999999998631 01 1 11123444443221111236999999999997543
No 201
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.49 E-value=3.3e-14 Score=140.84 Aligned_cols=175 Identities=25% Similarity=0.287 Sum_probs=103.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccch-HH-HHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQ-FLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~-~~-~l~~i~~~ 255 (654)
+|+|+|.+|||||||++.|++......+++++|.....+.+.+.+ ..+.++||||..+......... .. +......+
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 109 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL-NKYQIIDTPGLLDRAFENRNTIEMTTITALAHIN 109 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT-EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC-CeEEEEECCCCcCcccchhhhHHHHHHHHhhccc
Confidence 799999999999999999999776667889999998888887765 5799999999865433222110 11 11122334
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++++|+|++.. .......+. ..+..+.......|.++|+||+|+...........+....+...
T Consensus 110 d~~i~v~d~~~~-------~s~~~~~~~---~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----- 174 (228)
T 2qu8_A 110 GVILFIIDISEQ-------CGLTIKEQI---NLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN----- 174 (228)
T ss_dssp EEEEEEEETTCT-------TSSCHHHHH---HHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH-----
T ss_pred cEEEEEEecccc-------cCcchHHHH---HHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh-----
Confidence 567788887631 111111111 11222222223789999999999976433222111111111000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 376 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~ 376 (654)
......++++||+++ .|++++++.+.+.+....
T Consensus 175 -------~~~~~~~~~~SA~~g-~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 175 -------VKNPIKFSSFSTLTG-VGVEQAKITACELLKNDQ 207 (228)
T ss_dssp -------CCSCEEEEECCTTTC-TTHHHHHHHHHHHHHHHH
T ss_pred -------cCCCceEEEEecccC-CCHHHHHHHHHHHHHHHH
Confidence 000126899999999 999999999988775543
No 202
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.49 E-value=2.3e-15 Score=155.66 Aligned_cols=158 Identities=25% Similarity=0.294 Sum_probs=104.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecCccc-ccccccccchHHH----HHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLI-EGAHRNLGMGHQF----LRH 251 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~-~~~~~~~~l~~~~----l~~ 251 (654)
.|+|||+||||||||+|+|++....+ .+.|.||.....|.+.+++ .++.++||||+. .... .+...+ ...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-~~i~~iDTpG~~~~~~~---~l~~~~~~~~~~~ 85 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-YQAIYVDTPGLHMEEKR---AINRLMNKAASSS 85 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-EEEEEESSSSCCHHHHH---HHHHHHTCCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-eeEEEEECcCCCccchh---hHHHHHHHHHHHH
Confidence 69999999999999999999987643 5678899988889888766 589999999975 2110 011111 122
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccc-hHhHHHHHHHHHhccccc
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG-AQEIYDGIRDTLHNLKDH 330 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~-~~~~~~~l~~~~~~l~~~ 330 (654)
+..+|++++|+|+.. ++.....+..... -...|.++++||+|+.. .....+.+.+..+.
T Consensus 86 l~~~D~vl~Vvd~~~---------------~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---- 145 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---------------WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQ---- 145 (301)
T ss_dssp CCCEEEEEEEEETTC---------------CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTT----
T ss_pred HhcCCEEEEEEeCCC---------------CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHh----
Confidence 334566677777652 1112222222111 14789999999999986 33333333322221
Q ss_pred cccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.++..++++||+++ .+++++++.+.+.++
T Consensus 146 -------------~~~~~~i~iSA~~g-~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 146 -------------MNFLDIVPISAETG-LNVDTIAAIVRKHLP 174 (301)
T ss_dssp -------------SCCSEEEECCTTTT-TTHHHHHHHHHTTCC
T ss_pred -------------cCcCceEEEECCCC-CCHHHHHHHHHHhCC
Confidence 11236899999999 999999999876553
No 203
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=134.05 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=106.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||+++|.+........+.++.......+.+++. ..+.++|+||....... ....+..+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 82 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI-------TSTYYRGT 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC-------CGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh-------HHHHhccC
Confidence 47999999999999999999987666556666676677777776652 35899999996443221 11223456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|++.. ..+......+..+.......|.++|+||+|+....... +.........
T Consensus 83 d~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 143 (181)
T 3tw8_B 83 HGVIVVYDVTSA------------ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM------- 143 (181)
T ss_dssp SEEEEEEETTCH------------HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------
T ss_pred CEEEEEEECCCH------------HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc-------
Confidence 788888888631 23333334444444444568999999999987543211 1122221110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
+ .+++.+||+++ .|++++++.+.+.+...
T Consensus 144 ----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 144 ----------G-IQLFETSAKEN-VNVEEMFNCITELVLRA 172 (181)
T ss_dssp ----------T-CCEEECBTTTT-BSHHHHHHHHHHHHHHH
T ss_pred ----------C-CeEEEEECCCC-CCHHHHHHHHHHHHHHH
Confidence 1 26899999999 99999999998876554
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=144.29 Aligned_cols=139 Identities=10% Similarity=0.135 Sum_probs=75.8
Q ss_pred ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEE
Q psy1086 472 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 551 (654)
Q Consensus 472 ~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~ii 551 (654)
..+.++||||+.... ......+|++++|+|++.. ...+.+ ...+ ...|.++
T Consensus 167 ~~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~---------~~~~~i---~~~i-------l~~~~iv 217 (349)
T 2www_A 167 YDIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGG---------DELQGI---KRGI-------IEMADLV 217 (349)
T ss_dssp CSEEEEECCCC--CH----------HHHHTTCSEEEEEECCC-------------------------------CCSCSEE
T ss_pred CCEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcc---------hhHHHh---HHHH-------HhcCCEE
Confidence 378999999974311 1335789999999999732 111111 1111 2468899
Q ss_pred EEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHHHHHhhHhH
Q psy1086 552 LVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMV 631 (654)
Q Consensus 552 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~~~~~~~~~ 631 (654)
|+||+|+.+......... ++...+... .+....+..+++++||++|+ |+++|++.|.+.+.....+..-.-
T Consensus 218 VlNK~Dl~~~~~~~~~~~----~l~~~l~~~----~~~a~~~~~~vi~iSA~~g~-Gi~~L~~~I~~~~~~~~~~~~~~~ 288 (349)
T 2www_A 218 AVTKSDGDLIVPARRIQA----EYVSALKLL----RKRSQVWKPKVIRISARSGE-GISEMWDKMKDFQDLMLASGELTA 288 (349)
T ss_dssp EECCCSGGGHHHHHHHHH----HHHHHHTTC----C-----CCCEEEECCTTTCT-THHHHHHHHHHHHHHHHHHSHHHH
T ss_pred EEeeecCCCchhHHHHHH----HHHHHHHhc----CccccCCCceEEEEecCCCC-CHHHHHHHHHHHHHHHhhCchHHH
Confidence 999999975432221111 111111100 00000123578999999999 999999999998765422211122
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1086 632 DRELELVKKLKSSLREH 648 (654)
Q Consensus 632 ~~~~~~~~~~~~~~~~~ 648 (654)
.|+........+.+++.
T Consensus 289 ~R~~~~~~~~~~~~~~~ 305 (349)
T 2www_A 289 KRRKQQKVWMWNLIQES 305 (349)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555444
No 205
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=3.2e-14 Score=150.73 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=77.0
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCC---------CcccccceeEEEEeCCC-ceEEEEecCCCCCCC-------cc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASY---------PFTTIKPNVGVITFDDF-RKMSVADLPGLIEGA-------HR 488 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~---------~~~t~~~~~~~v~~~~~-~~~~i~DTpG~~~~~-------~~ 488 (654)
+|+++|++|+|||||+++|++...+.... ++++.......+..++. ..+.+|||||+.+.. ..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i 118 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 118 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHH
Confidence 68999999999999999988765544322 22222222222233321 168999999994432 22
Q ss_pred ccchhHHHHHHhhccc-------------EEEEEEeCCCcccCCCCCccchHHHHH-HHHHHHHHhhcccCCCCEEEEEe
Q psy1086 489 NLGMGHQFLRHVERTK-------------LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVN 554 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a~-------------~~ilV~D~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~p~iiv~N 554 (654)
...+...+..|++.++ ++++++|.+. .++..+. .|...+ ..+.|+|+|+|
T Consensus 119 ~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~----------~~l~~~d~~~~~~l------~~~~piIlV~N 182 (361)
T 2qag_A 119 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG----------HGLKPLDVAFMKAI------HNKVNIVPVIA 182 (361)
T ss_dssp HHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS----------SSCCHHHHHHHHHT------CS-SCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC----------CCcchhHHHHHHHh------ccCCCEEEEEE
Confidence 2222233446666554 4445554321 1122221 222222 24689999999
Q ss_pred CCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 555 KMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 555 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
|+|+...+++.... .++.+.+.. .++++|++||++|. + ++.|..+.+.+.
T Consensus 183 K~Dl~~~~ev~~~k----~~i~~~~~~-----------~~i~~~~~Sa~~~~-~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 183 KADTLTLKERERLK----KRILDEIEE-----------HNIKIYHLPDAESD-E-DEDFKEQTRLLK 232 (361)
T ss_dssp CCSSSCHHHHHHHH----HHHHHHTTC-----------C-CCSCCCC-----------CHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HHHHHHHHH-----------CCCCEEeCCCcCCC-c-chhHHHHHHHHH
Confidence 99998776554321 122222222 23468999999998 8 888777776654
No 206
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.48 E-value=1.2e-14 Score=146.77 Aligned_cols=155 Identities=23% Similarity=0.369 Sum_probs=107.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc--ccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN--LGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~--~~l~~~~l~~i~~~ 255 (654)
+|+|+|.||||||||+++|+|....+.++|++|.....+.+...+ ..+.++|+||........ ..+...++.. ..+
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~ 84 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-YTINLIDLPGTYSLGYSSIDEKIARDYLLK-GDA 84 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCCSSCCSSSHHHHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC-eEEEEEECCCcCccCCCCHHHHHHHHHHhh-cCC
Confidence 699999999999999999999888888999999999999998765 579999999986543211 1122222221 346
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l~~~i~ 332 (654)
+++++|+|++.. +....+..++.. ...|.++++||+|+...... .+.+.+.+
T Consensus 85 d~ii~V~D~t~~------------~~~~~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-------- 139 (258)
T 3a1s_A 85 DLVILVADSVNP------------EQSLYLLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL-------- 139 (258)
T ss_dssp SEEEEEEETTSC------------HHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------
T ss_pred CEEEEEeCCCch------------hhHHHHHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------
Confidence 777888888632 111112222211 47899999999998643221 12222211
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ .+++++||+++ .|++++++.+.+...
T Consensus 140 ------------g-~~vi~~SA~~g-~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 140 ------------G-IPVVFTSSVTG-EGLEELKEKIVEYAQ 166 (258)
T ss_dssp ------------C-SCEEECCTTTC-TTHHHHHHHHHHHHH
T ss_pred ------------C-CCEEEEEeeCC-cCHHHHHHHHHHHhh
Confidence 1 26899999999 999999999877553
No 207
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.47 E-value=1.5e-14 Score=138.14 Aligned_cols=156 Identities=26% Similarity=0.439 Sum_probs=104.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc--ccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN--LGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~--~~l~~~~l~~i~~~ 255 (654)
+|+|+|++|||||||+++|++.......+|++|..+..+.+.+++ ..+.++||||........ ..+...+++. ..+
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~ 86 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIIN-EKP 86 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCCSCCSSSSHHHHHHHHHHHH-HCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-cEEEEEECCCcCccccccHHHHHHHHHHhc-cCC
Confidence 699999999999999999999777777889999999999998876 579999999986542110 1111222211 125
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh---HHHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE---IYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~---~~~~l~~~~~~l~~~i~ 332 (654)
+++++++|...+ +....+..++ .. ...|.++|+||+|+..... ..+.+.+...
T Consensus 87 ~~~i~v~d~~~~------------~~~~~~~~~~---~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 142 (188)
T 2wjg_A 87 DLVVNIVDATAL------------ERNLYLTLQL---ME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG------- 142 (188)
T ss_dssp SEEEEEEEGGGH------------HHHHHHHHHH---HT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-------
T ss_pred CEEEEEecchhH------------HHHHHHHHHH---Hh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC-------
Confidence 566667776521 2221111111 11 4679999999999864432 1222221111
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..++++||+++ .+++++++.+.+.+..
T Consensus 143 --------------~~~~~~Sa~~~-~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 --------------VKVVPLSAAKK-MGIEELKKAISIAVKD 169 (188)
T ss_dssp --------------SCEEECBGGGT-BSHHHHHHHHHHHHTT
T ss_pred --------------CCeEEEEecCC-CCHHHHHHHHHHHHHh
Confidence 25899999999 9999999999877654
No 208
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.47 E-value=2.2e-13 Score=129.90 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=104.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.|++.. ....++.|+.......+.+++. ..+.++|+||...... + ....+..++
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~~ 77 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA----M---RDQYMRTGE 77 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS-CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT----T---HHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH----H---HHHHHhcCC
Confidence 79999999999999999999754 4566777776666666666542 1367899999643221 2 223445577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++|+|+... .....+.....++..+.. ....|.++|+||+|+.......+...+.....
T Consensus 78 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~--------- 138 (189)
T 4dsu_A 78 GFLCVFAINNT---------KSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY--------- 138 (189)
T ss_dssp EEEEEEETTCH---------HHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH---------
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccCHHHHHHHHHHc---------
Confidence 88888888631 122233333333332221 24689999999999975433333333322211
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLA 376 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~ 376 (654)
+ .+++++||+++ .|++++++.+.+.+....
T Consensus 139 --------~-~~~~~~Sa~~g-~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 139 --------G-IPFIETSAKTR-QGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp --------T-CCEEECCTTTC-TTHHHHHHHHHHHHHHHH
T ss_pred --------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHHhh
Confidence 1 25899999999 999999999988776543
No 209
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=9.5e-13 Score=139.25 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=70.4
Q ss_pred ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEE
Q psy1086 472 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 551 (654)
Q Consensus 472 ~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~ii 551 (654)
..+.+|||||+.. .....+..+|++++|+|++... ..+.+. ......|.++
T Consensus 172 ~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~---------~~~~l~----------~~~~~~p~iv 222 (355)
T 3p32_A 172 FDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGD---------QLQGIK----------KGVLELADIV 222 (355)
T ss_dssp CCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTC---------TTTTCC----------TTSGGGCSEE
T ss_pred CCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCc---------cHHHHH----------HhHhhcCCEE
Confidence 3799999999633 1123458999999999987321 111110 0112369999
Q ss_pred EEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHHH
Q psy1086 552 LVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 623 (654)
Q Consensus 552 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~~ 623 (654)
|+||+|+.+......... .+.+....... ....+..+++++||++|+ ||++|++.|.+.+...
T Consensus 223 VlNK~Dl~~~~~~~~~~~-~l~~~l~~~~~-------~~~~~~~~vi~iSA~~g~-Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 223 VVNKADGEHHKEARLAAR-ELSAAIRLIYP-------REALWRPPVLTMSAVEGR-GLAELWDTVERHRQVL 285 (355)
T ss_dssp EEECCCGGGHHHHHHHHH-HHHHHHHHHST-------TCCSCCCCEEEEBGGGTB-SHHHHHHHHHHHHHHH
T ss_pred EEECCCCcChhHHHHHHH-HHHHHHhhccc-------cccCCCCceEEEEcCCCC-CHHHHHHHHHHHHHHh
Confidence 999999976543322221 12211111100 001123579999999999 9999999999988654
No 210
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.46 E-value=4.9e-13 Score=153.14 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=81.1
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc------------cC------CCcccccceeEEEEeCCCceEEEEecCCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI------------AS------YPFTTIKPNVGVITFDDFRKMSVADLPGLIE 484 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~------------~~------~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~ 484 (654)
+..+|+++|+.++|||||+++|+...... .+ ..++|.......+.+++ ..+.+|||||+.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~-~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT-EEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC-eEEEEEECcCccc
Confidence 34689999999999999999998431110 00 34667777777778876 4899999999644
Q ss_pred CCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh
Q psy1086 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 561 (654)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~ 561 (654)
+...+..+++.+|++++|+|++. ..+.+....|.. +. ..+.|+++|+||+|+...
T Consensus 90 -------f~~~~~~~l~~aD~~ilVvDa~~---------g~~~~t~~~~~~-~~-----~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 -------FTIEVERSMRVLDGAIVVFDSSQ---------GVEPQSETVWRQ-AE-----KYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp -------CHHHHHHHHHHCSEEEEEEETTT---------CSCHHHHHHHHH-HH-----HTTCCEEEEEECTTSTTC
T ss_pred -------hHHHHHHHHHHCCEEEEEEECCC---------CcchhhHHHHHH-HH-----HcCCCEEEEEECCCcccC
Confidence 56677799999999999999983 334455444432 21 247899999999999754
No 211
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.46 E-value=1.1e-13 Score=146.83 Aligned_cols=165 Identities=16% Similarity=0.100 Sum_probs=101.0
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccce------------------------------------------
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN------------------------------------------ 462 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~------------------------------------------ 462 (654)
++|+++|.+|+|||||+++|++..+.......+|..+.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 49999999999999999999997664333222221111
Q ss_pred ------------eEEEEeCCCceEEEEecCCCCCCCcc------ccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCcc
Q psy1086 463 ------------VGVITFDDFRKMSVADLPGLIEGAHR------NLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKR 524 (654)
Q Consensus 463 ------------~~~v~~~~~~~~~i~DTpG~~~~~~~------~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~ 524 (654)
...+.......+.+|||||+.+.... ...+...+..|++.+|++++|+|.+.. +.
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-------~~ 187 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-------DL 187 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-------CG
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-------Cc
Confidence 11122222346899999999876321 122456677899999999999997621 11
Q ss_pred chHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeec
Q psy1086 525 SCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT 604 (654)
Q Consensus 525 ~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAkt 604 (654)
.. ..|...+... ...+.|+|+|+||+|+.+.......+ + .... .....+|+++||++
T Consensus 188 ~~----~~~~~l~~~~--~~~~~~~i~V~nK~Dl~~~~~~~~~~---~---~~~~-----------~~~~~~~~~v~~~s 244 (360)
T 3t34_A 188 AT----SDAIKISREV--DPSGDRTFGVLTKIDLMDKGTDAVEI---L---EGRS-----------FKLKYPWVGVVNRS 244 (360)
T ss_dssp GG----CHHHHHHHHS--CTTCTTEEEEEECGGGCCTTCCSHHH---H---TTSS-----------SCCSSCCEEECCCC
T ss_pred CC----HHHHHHHHHh--cccCCCEEEEEeCCccCCCcccHHHH---H---cCcc-----------ccccCCeEEEEECC
Confidence 11 1222222222 23468999999999997653321111 1 1111 12234689999999
Q ss_pred CCCChHHHHHHHHHHH
Q psy1086 605 NSTDVNDAKLKIRSIL 620 (654)
Q Consensus 605 g~~gv~el~~~i~~~~ 620 (654)
+. ++++.+.......
T Consensus 245 ~~-~i~~~~~~~~~~~ 259 (360)
T 3t34_A 245 QA-DINKNVDMIAARK 259 (360)
T ss_dssp HH-HHHTTCCHHHHHH
T ss_pred hH-HhccCCCHHHHHH
Confidence 88 8887766554443
No 212
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.45 E-value=4.3e-13 Score=124.84 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=99.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+.+.. ....++.|+.......+.+++. ..+.++|+||.... .......+..++
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d 77 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSGE 77 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-------HHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc-cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh-------HHHHHHHhhcCC
Confidence 69999999999999999999865 3455666665555555555542 25889999995432 223334456678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh--cCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL--LEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l--~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
.+++|+|+... ..+......+..+.... ...|.++|+||+|+...... .++..+.....
T Consensus 78 ~~i~v~d~~~~------------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------ 139 (168)
T 1u8z_A 78 GFLCVFSITEM------------ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW------ 139 (168)
T ss_dssp EEEEEEETTCH------------HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH------
T ss_pred EEEEEEECCCH------------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc------
Confidence 88888888631 22222223222222222 36899999999998754221 22222222211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ .+++++++.+.+.+
T Consensus 140 -----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 140 -----------N-VNYVETSAKTR-ANVDKVFFDLMREI 165 (168)
T ss_dssp -----------T-CEEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred -----------C-CeEEEeCCCCC-CCHHHHHHHHHHHH
Confidence 1 26899999999 99999999987655
No 213
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.45 E-value=9.2e-14 Score=133.54 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=106.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||+++|.+........+.++.......+.+++. ..+.++|+||...... .....+..+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------ITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT-------THHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHHhhC
Confidence 47999999999999999999987666666676777777777777653 2589999999543221 233445567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... ..+..+.....++..+. ....|.++|+||+|+....... +...+.....
T Consensus 90 d~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 151 (196)
T 3tkl_A 90 HGIIVVYDVTDQ---------ESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL------- 151 (196)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccccCHHHHHHHHHHc-------
Confidence 888899988731 12222222222222221 1367899999999987543221 1222222111
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++.+||+++ .+++++++.+.+.+..
T Consensus 152 ----------~-~~~~~~Sa~~g-~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 152 ----------G-IPFLETSAKNA-TNVEQSFMTMAAEIKK 179 (196)
T ss_dssp ----------T-CCEEEECTTTC-TTHHHHHHHHHHHHHH
T ss_pred ----------C-CcEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999998876654
No 214
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.45 E-value=1.4e-13 Score=128.72 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=93.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+++........+.++.......+.+++. ..+.++|+||....... +.. ..+..++
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~---~~~~~~d 77 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW---LQD---HCLQTGD 77 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----------C---HHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh---hhh---hhhccCC
Confidence 6899999999999999999986665555566666666666666552 25789999997532211 111 1234577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh--cCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL--LEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l--~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
.+++|+|++.. ..+......+..+.... ...|.++|+||+|+...... .+...+.....
T Consensus 78 ~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------ 139 (169)
T 3q85_A 78 AFLIVFSVTDR------------RSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL------ 139 (169)
T ss_dssp EEEEEEETTCH------------HHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT------
T ss_pred EEEEEEECCCh------------HHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc------
Confidence 88888888631 22333333333333322 36899999999998743322 12222222111
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++.+||+++ .+++++++.+.+.+.
T Consensus 140 -----------~-~~~~~~Sa~~~-~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 140 -----------S-CKHIETSAALH-HNTRELFEGAVRQIR 166 (169)
T ss_dssp -----------T-CEEEECBTTTT-BSHHHHHHHHHHHHH
T ss_pred -----------C-CcEEEecCccC-CCHHHHHHHHHHHHH
Confidence 1 26899999999 999999999887654
No 215
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.44 E-value=6.4e-13 Score=128.64 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=105.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+|+|.+|||||||++.|.+.. ....|++|+.......+.+++. ..+.++|+||.... .......+..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh-------HHHHHHHHhhC
Confidence 379999999999999999999865 3556777776666666666542 25889999996432 22233445567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh--cCcceeEeecccCccchHhH-HHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL--LEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l--~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~ 332 (654)
+.+++|+|+... ..+......+..+.... ...|.++|+||+|+...... .+...++....
T Consensus 87 ~~~i~v~d~~~~------------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----- 149 (206)
T 2bov_A 87 EGFLCVFSITEM------------ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW----- 149 (206)
T ss_dssp SEEEEEEETTCH------------HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-----
T ss_pred CEEEEEEECCCH------------HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh-----
Confidence 788888888631 22222333333332222 37899999999999754221 22233222211
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
+ ..++++||+++ .|++++++.+.+.+...
T Consensus 150 ------------~-~~~~~~Sa~~g-~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 150 ------------N-VNYVETSAKTR-ANVDKVFFDLMREIRAR 178 (206)
T ss_dssp ------------T-CEEEEECTTTC-TTHHHHHHHHHHHHHHH
T ss_pred ------------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHHc
Confidence 1 26899999999 99999999998776543
No 216
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.44 E-value=3.6e-13 Score=127.32 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=102.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||+++|++. .....++.|+.......+.+++. ..+.++|+||..... .+. ...+..++
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----~~~---~~~~~~~d 82 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS-YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----AMR---EQYMRAGH 82 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS-SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----CCH---HHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhC-cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH----HHH---HHHHhhCC
Confidence 7999999999999999999985 34456666666555555666542 257899999965432 122 23445678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
.+++|+|+... ..+......+..+.. .....|.++|+||+|+...... .+....+....
T Consensus 83 ~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~------ 144 (181)
T 2fn4_A 83 GFLLVFAINDR------------QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH------ 144 (181)
T ss_dssp EEEEEEETTCH------------HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT------
T ss_pred EEEEEEeCCCH------------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc------
Confidence 88888888631 222223232222221 1246799999999999754322 12222221110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .|++++++.+.+.+..
T Consensus 145 -----------~-~~~~~~Sa~~~-~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 145 -----------H-VAYFEASAKLR-LNVDEAFEQLVRAVRK 172 (181)
T ss_dssp -----------T-CEEEECBTTTT-BSHHHHHHHHHHHHHH
T ss_pred -----------C-CeEEEecCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999999877654
No 217
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.44 E-value=6.1e-13 Score=126.39 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=103.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.|.+.. ....++.|+.......+.+++. ..+.++|+||.... .......+..++
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d 91 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSGE 91 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC-CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCC-CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc-------HHHHHHHhccCC
Confidence 79999999999999999999854 3456666666555555555542 25889999996432 223344556678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... ..+..+..+..++..+.. ....|.++|+||+|+...... .++..+.....
T Consensus 92 ~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------- 153 (187)
T 2a9k_A 92 GFLCVFSITEM---------ESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-------- 153 (187)
T ss_dssp EEEEEEETTCH---------HHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT--------
T ss_pred EEEEEEECcCH---------HHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHc--------
Confidence 88888888631 122222222233322221 136899999999998653221 22333332211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++++||+++ .+++++++.+.+.+..
T Consensus 154 ---------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 154 ---------N-VNYVETSAKTR-ANVDKVFFDLMREIRA 181 (187)
T ss_dssp ---------T-CEEEECCTTTC-TTHHHHHHHHHHHHHH
T ss_pred ---------C-CeEEEeCCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999999876643
No 218
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.44 E-value=1e-12 Score=150.60 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=81.5
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc------------cC------CCcccccceeEEEEeCCCceEEEEecCCCCC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI------------AS------YPFTTIKPNVGVITFDDFRKMSVADLPGLIE 484 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~------------~~------~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~ 484 (654)
+..+|+++|++|+|||||+++|+...... .+ .+++|+......+.+++ ..+.+|||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG-HRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT-EEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC-eeEEEEECcCCcc
Confidence 34689999999999999999998531111 11 35677777777788876 4899999999755
Q ss_pred CCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh
Q psy1086 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 561 (654)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~ 561 (654)
+...+..+++.||++++|+|++. ..+.+....|.. +. ..+.|+++|+||+|+...
T Consensus 88 -------f~~~~~~~l~~aD~~llVvDa~~---------g~~~~~~~~~~~-~~-----~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 -------FTVEVERSLRVLDGAVTVLDAQS---------GVEPQTETVWRQ-AT-----TYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp -------CCHHHHHHHHHCSEEEEEEETTT---------BSCHHHHHHHHH-HH-----HTTCCEEEEEECTTSTTC
T ss_pred -------hHHHHHHHHHHCCEEEEEECCCC---------CCcHHHHHHHHH-HH-----HcCCCEEEEEECCCcccc
Confidence 44566789999999999999983 333444444432 22 247899999999999754
No 219
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.44 E-value=1.3e-13 Score=128.91 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=97.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+.+........|.++.......+.+++. ..+.++|+||...... + ....+..++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~---~~~~~~~~d 77 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT----I---TTAYYRGAM 77 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC----C---CHHHHTTEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh----h---HHHHhccCC
Confidence 6899999999999999999987654444454454555556665542 2588999999643322 2 223345677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh-cCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL-LEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l-~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... ..+......+..+.... ...|.++|+||+|+.......+...+.....
T Consensus 78 ~~i~v~d~~~~------------~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------- 137 (170)
T 1g16_A 78 GIILVYDITDE------------RTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL-------- 137 (170)
T ss_dssp EEEEEEETTCH------------HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH--------
T ss_pred EEEEEEECCCH------------HHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc--------
Confidence 88889888631 12222222222222211 3678999999999854322222222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++++||+++ .+++++++.+.+.+..
T Consensus 138 ---------~-~~~~~~Sa~~~-~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 138 ---------G-IPFIESSAKND-DNVNEIFFTLAKLIQE 165 (170)
T ss_dssp ---------T-CCEEECBTTTT-BSHHHHHHHHHHHHHH
T ss_pred ---------C-CeEEEEECCCC-CCHHHHHHHHHHHHHH
Confidence 1 15899999999 9999999998876643
No 220
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.44 E-value=4.3e-13 Score=142.11 Aligned_cols=168 Identities=29% Similarity=0.381 Sum_probs=110.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccccc-ch-HHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLG-MG-HQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~-l~-~~~l~~i~~ 254 (654)
..|+++|.||||||||++.|++..+.+.+++++|..+..+.+...+ ..+.++||||+......... .. ..+......
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY-FRYQIIDTPGLLDRPISERNEIEKQAILALRYL 246 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT-EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC-ceEEEEeCCCccccchhhhhHHHHHHHHHHHhc
Confidence 4799999999999999999999888788999999999999887764 57999999998654322111 11 111111123
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++.+++|+|++.. ..........+..++... ....|.++|+||+|+...... +...+.....
T Consensus 247 ad~illV~D~s~~-------~~~~~~~~~~~~~~i~~~---~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~------- 308 (357)
T 2e87_A 247 GNLIIYIFDPSEH-------CGFPLEEQIHLFEEVHGE---FKDLPFLVVINKIDVADEENI-KRLEKFVKEK------- 308 (357)
T ss_dssp CSEEEEEECTTCT-------TSSCHHHHHHHHHHHHHH---TTTSCEEEEECCTTTCCHHHH-HHHHHHHHHT-------
T ss_pred CCEEEEEEeCCcc-------ccCCHHHHHHHHHHHHHh---cCCCCEEEEEECcccCChHHH-HHHHHHHHhc-------
Confidence 5566777776531 000122222222222221 127899999999999865432 2222222210
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
..+++.+||+++ +|++++++.+.+.+...
T Consensus 309 -----------~~~~~~iSA~~g-~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 309 -----------GLNPIKISALKG-TGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp -----------TCCCEECBTTTT-BTHHHHHHHHHHHHHHH
T ss_pred -----------CCCeEEEeCCCC-cCHHHHHHHHHHHHHHH
Confidence 025889999999 99999999998877544
No 221
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.44 E-value=2.4e-13 Score=126.81 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=98.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.|.+........|..+.......+.+++ ...+.++|+||..+... +. ...+..++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~---~~~~~~~d 79 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA----IT---KAYYRGAQ 79 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC----CC---HHHHTTCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH----HH---HHHhcCCC
Confidence 789999999999999999998654333333333444455555544 23689999999653321 22 23344577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++.. ..+......+..+.......|.++|+||+|+...... .+...+.....
T Consensus 80 ~~i~v~d~~~~------------~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------- 139 (168)
T 1z2a_A 80 ACVLVFSTTDR------------ESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-------- 139 (168)
T ss_dssp EEEEEEETTCH------------HHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--------
T ss_pred EEEEEEECcCH------------HHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc--------
Confidence 88888888631 1222222222222222257899999999998753221 22222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ .+++++++.+.+.+
T Consensus 140 ---------~-~~~~~~Sa~~~-~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 140 ---------K-LRFYRTSVKED-LNVSEVFKYLAEKH 165 (168)
T ss_dssp ---------T-CEEEECBTTTT-BSSHHHHHHHHHHH
T ss_pred ---------C-CeEEEEecCCC-CCHHHHHHHHHHHH
Confidence 1 26899999999 99999999987654
No 222
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.43 E-value=8.6e-13 Score=146.24 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=78.7
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc----------------c------CCCcccccceeEEEEeCCCceEEEEecC
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI----------------A------SYPFTTIKPNVGVITFDDFRKMSVADLP 480 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~----------------~------~~~~~t~~~~~~~v~~~~~~~~~i~DTp 480 (654)
+..+|+++|++++|||||+++|+.....+ . ...++|.......+.+++ ..+.+||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD-CLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT-EEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC-eEEEEEECC
Confidence 34689999999999999999998742111 0 134556666666777776 489999999
Q ss_pred CCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccC
Q psy1086 481 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG 560 (654)
Q Consensus 481 G~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~ 560 (654)
|+.+ +...+..+++.+|++++|+|++.. ..... ..+.... ...+.|+++|+||+|+..
T Consensus 91 G~~d-------f~~~~~~~l~~aD~~IlVvDa~~g---------~~~~t-~~~~~~~-----~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHED-------FSEDTYRTLTAVDCCLMVIDAAKG---------VEDRT-RKLMEVT-----RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTT-------CCHHHHHGGGGCSEEEEEEETTTC---------SCHHH-HHHHHHH-----TTTTCCEEEEEECTTSCC
T ss_pred CChh-------HHHHHHHHHHHCCEEEEEEeCCcc---------chHHH-HHHHHHH-----HHcCCCEEEEEcCcCCcc
Confidence 9754 445666889999999999999842 11111 1121211 224789999999999975
Q ss_pred h
Q psy1086 561 A 561 (654)
Q Consensus 561 ~ 561 (654)
.
T Consensus 149 ~ 149 (529)
T 2h5e_A 149 R 149 (529)
T ss_dssp S
T ss_pred c
Confidence 4
No 223
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.43 E-value=7.7e-13 Score=150.48 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=104.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccc---------------------------------------------
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTI--------------------------------------------- 459 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~--------------------------------------------- 459 (654)
++|+++|..++||||++|+|++..+.......+|+
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~ 131 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 131 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCC
Confidence 69999999999999999999997663222222221
Q ss_pred ------cceeEEEEeCCCceEEEEecCCCCCCCcc--c----cchhHHHHHHhh-cccEEEEEEeCCCcccCCCCCccch
Q psy1086 460 ------KPNVGVITFDDFRKMSVADLPGLIEGAHR--N----LGMGHQFLRHVE-RTKLIAMIVDVNGFQLGLKHPKRSC 526 (654)
Q Consensus 460 ------~~~~~~v~~~~~~~~~i~DTpG~~~~~~~--~----~~~~~~~~~~~~-~a~~~ilV~D~~~~~~~~~~~~~~~ 526 (654)
++....+..++...+.++||||+.+.... . ..+...+..|+. .+|++++|+|++. .+..++
T Consensus 132 ~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~---~~~~~d--- 205 (772)
T 3zvr_A 132 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS---DLANSD--- 205 (772)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS---CSSSCH---
T ss_pred CCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC---CcchhH---
Confidence 22233344445457999999999873311 1 224445556664 7899999999983 222221
Q ss_pred HHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCC
Q psy1086 527 VETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS 606 (654)
Q Consensus 527 ~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~ 606 (654)
...+..++ ...+.|+|+|+||+|+.+.......+. . .+.. .. ...+.+++++||++|.
T Consensus 206 ---~l~ll~~L-----~~~g~pvIlVlNKiDlv~~~~~~~~il----~-~~~~---~l------~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 206 ---ALKIAKEV-----DPQGQRTIGVITKLDLMDEGTDARDVL----E-NKLL---PL------RRGYIGVVNRSQKDID 263 (772)
T ss_dssp ---HHHHHHHH-----CTTCSSEEEEEECTTSSCTTCCSHHHH----T-TCSS---CC------SSCEEECCCCCCEESS
T ss_pred ---HHHHHHHH-----HhcCCCEEEEEeCcccCCcchhhHHHH----H-HHhh---hh------hccCCceEEecccccc
Confidence 11222322 234689999999999986532211111 1 0000 00 1245678999999999
Q ss_pred CChHHHHHHHHHH
Q psy1086 607 TDVNDAKLKIRSI 619 (654)
Q Consensus 607 ~gv~el~~~i~~~ 619 (654)
|+++|++.+.+.
T Consensus 264 -GvdeL~eaI~~e 275 (772)
T 3zvr_A 264 -GKKDITAALAAE 275 (772)
T ss_dssp -SSEEHHHHHHHH
T ss_pred -cchhHHHHHHHH
Confidence 999999999864
No 224
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.42 E-value=5.7e-13 Score=128.44 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=96.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC---------------------------------
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--------------------------------- 223 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~--------------------------------- 223 (654)
-+|+++|.+|||||||+++|++........+.+........+.+++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYN 87 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccccc
Confidence 37999999999999999999986543222222222233333443321
Q ss_pred -----ccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcC
Q psy1086 224 -----RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 298 (654)
Q Consensus 224 -----~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~ 298 (654)
..+.++|+||...... .....+..++++++|+|++.. ..+......+..+.. ...
T Consensus 88 ~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~------------~s~~~~~~~~~~i~~-~~~ 147 (208)
T 3clv_A 88 ENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNS------------NTLDRAKTWVNQLKI-SSN 147 (208)
T ss_dssp TTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCH------------HHHHHHHHHHHHHHH-HSC
T ss_pred CccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCH------------HHHHHHHHHHHHHHh-hCC
Confidence 3689999999643221 233445667888999998631 122222222222222 234
Q ss_pred cceeEeecccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 299 KPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 299 ~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.|.++|+||+|........+++.++.... + ..++++||+++ .+++++++.+.+.+.
T Consensus 148 ~piilv~NK~D~~~~~~~~~~~~~~~~~~-----------------~-~~~~~~Sa~~~-~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 148 YIIILVANKIDKNKFQVDILEVQKYAQDN-----------------N-LLFIQTSAKTG-TNIKNIFYMLAEEIY 203 (208)
T ss_dssp CEEEEEEECTTCC-CCSCHHHHHHHHHHT-----------------T-CEEEEECTTTC-TTHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCcccccCCHHHHHHHHHHc-----------------C-CcEEEEecCCC-CCHHHHHHHHHHHHH
Confidence 89999999999432222233444333321 1 26899999999 999999999887654
No 225
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.42 E-value=1.5e-13 Score=129.70 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=100.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC--ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~--~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|||||||++.+++........|.++.+.....+.+++. ..+.++|+||...... + ....+..+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----~---~~~~~~~~ 80 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK----M---LDKYIYGA 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT----T---HHHHHTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc----h---hhHHHhhC
Confidence 6999999999999999999986432111122224455566666652 4689999999643221 2 23345567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcc-eeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P-~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|++.. ..+..+..+..++..+.......| .++|+||+|+...... .+...+.....
T Consensus 81 d~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~------ 145 (178)
T 2hxs_A 81 QGVLLVYDITNY---------QSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN------ 145 (178)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH------
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc------
Confidence 888999998631 122333333344444433333566 6888999999753221 12222222111
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++++||+++ .+++++++.+.+.+.
T Consensus 146 -----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 146 -----------G-FSSHFVSAKTG-DSVFLCFQKVAAEIL 172 (178)
T ss_dssp -----------T-CEEEEECTTTC-TTHHHHHHHHHHHHT
T ss_pred -----------C-CcEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 1 26899999999 999999999887653
No 226
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=130.36 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=98.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.|++........+..+.......+.+++. ..+.++|+||... +.......+..++
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~d 100 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSAK 100 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH-------HHHHHHHHhcCCC
Confidence 6999999999999999999986554444454445555566666542 2589999999542 2233445567788
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... .....+..+...+..+. ....|.++|+||+|+...... .+...+.....
T Consensus 101 ~iilV~D~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~-------- 161 (192)
T 2il1_A 101 GIILVYDITKK---------ETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREITRQQGEKFAQQI-------- 161 (192)
T ss_dssp EEEEEEETTCH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS--------
T ss_pred EEEEEEECcCH---------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHhc--------
Confidence 89999998731 12222222222222221 136789999999998754322 12222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
....++.+||+++ .|++++++.+.+.+.
T Consensus 162 ---------~~~~~~~~SA~~g-~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 162 ---------TGMRFCEASAKDN-FNVDEIFLKLVDDIL 189 (192)
T ss_dssp ---------TTCEEEECBTTTT-BSHHHHHHHHHHHHH
T ss_pred ---------CCCeEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 0126899999999 999999999876653
No 227
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.42 E-value=4e-14 Score=154.78 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=89.5
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccC-CCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccch-HHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRAR-PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLRHVE 253 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~-~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~-~~~l~~i~ 253 (654)
+-+|+|+|.||||||||+|+|++.. ..+.++|+||.+.....+.+++ ..+.++||||+.+.......++ ......+.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-TMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-EEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-eEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 4469999999999999999999975 4567899999999999998876 5899999999865332211111 22233456
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
.+|++++|+|.+... .......+ .. +...+...|.++|+||+|+........ +.+...
T Consensus 312 ~aD~vl~VvD~s~~~------s~~~~~~~---~~----~l~~l~~~piIvV~NK~Dl~~~~~~~~---~~l~~~------ 369 (476)
T 3gee_A 312 EADLILYLLDLGTER------LDDELTEI---RE----LKAAHPAAKFLTVANKLDRAANADALI---RAIADG------ 369 (476)
T ss_dssp SCSEEEEEEETTTCS------SGGGHHHH---HH----HHHHCTTSEEEEEEECTTSCTTTHHHH---HHHHHH------
T ss_pred cCCEEEEEEECCCCc------chhhhHHH---HH----HHHhcCCCCEEEEEECcCCCCccchhH---HHHHhc------
Confidence 678899999987421 00001111 11 112234789999999999976543211 111110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
++.+++++||+++ +|++++++.+.+.+.
T Consensus 370 -----------~~~~~i~vSAktg-~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 -----------TGTEVIGISALNG-DGIDTLKQHMGDLVK 397 (476)
T ss_dssp -----------HTSCEEECBTTTT-BSHHHHHHHHTHHHH
T ss_pred -----------CCCceEEEEECCC-CCHHHHHHHHHHHHh
Confidence 0126899999999 999999999988776
No 228
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.41 E-value=3.4e-13 Score=130.80 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=103.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|||||||++.|++........+..+.......+.+++. ..+.++|+||........ . ..+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~---~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----V---AFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC----C---GGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH----H---HHHhCC
Confidence 47999999999999999999987654444444445555556655542 358999999965432221 1 223456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|++.. .....+..+..++..... .....|.++|+||+|+.......+...++....
T Consensus 82 d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------ 146 (207)
T 1vg8_A 82 DCCVLVFDVTAP---------NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK------ 146 (207)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT------
T ss_pred cEEEEEEECCCH---------HHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhc------
Confidence 788888888631 122222222222222211 014679999999999974332233333332210
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
....++.+||+++ .|++++++.+.+.+...
T Consensus 147 -----------~~~~~~~~Sa~~g-~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 147 -----------NNIPYFETSAKEA-INVEQAFQTIARNALKQ 176 (207)
T ss_dssp -----------TSCCEEECBTTTT-BSHHHHHHHHHHHHHHH
T ss_pred -----------CCceEEEEeCCCC-CCHHHHHHHHHHHHHHh
Confidence 0126899999999 99999999998776543
No 229
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.41 E-value=1.3e-12 Score=149.76 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=82.3
Q ss_pred ccceEEEEcCCCCChhhHHHHHHhcCCCc------------cC------CCcccccceeEEEEeCCC------ceEEEEe
Q psy1086 423 LIADIGLVGFPNAGKSTFLKAISRARPKI------------AS------YPFTTIKPNVGVITFDDF------RKMSVAD 478 (654)
Q Consensus 423 ~~~~v~~~G~~~~GKstl~~~l~~~~~~~------------~~------~~~~t~~~~~~~v~~~~~------~~~~i~D 478 (654)
+..+|+++|+.++|||||+++|+...... .+ ..++|.......+.+++. ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 34689999999999999999997642110 01 345566666566677651 3799999
Q ss_pred cCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCc
Q psy1086 479 LPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDV 558 (654)
Q Consensus 479 TpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl 558 (654)
|||+.+ +...+..+++.||++++|+|++.. ...++...|.. . ...+.|+++|+||+|+
T Consensus 89 TPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~g---------v~~qt~~~~~~-~-----~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 89 TPGHVD-------FTIEVERSMRVLDGAVMVYCAVGG---------VQPQSETVWRQ-A-----NKYKVPRIAFVNKMDR 146 (704)
T ss_pred CCCccc-------hHHHHHHHHHHCCEEEEEEeCCCC---------CcHHHHHHHHH-H-----HHcCCCEEEEEeCCCc
Confidence 999654 556677899999999999999832 22333333322 1 1247899999999998
Q ss_pred cCh
Q psy1086 559 EGA 561 (654)
Q Consensus 559 ~~~ 561 (654)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 230
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.41 E-value=3.5e-13 Score=127.13 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=98.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|||||||++.+.+........|..+.......+.+++. ..+.++|+||.... .......+..+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHHhcC
Confidence 37999999999999999999986554333444444444555555542 26899999995432 11222334456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|+... .....+..+..++..+... ....|.++|+||+|+.......+...+.....
T Consensus 81 ~~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------ 145 (177)
T 1wms_A 81 DCCLLTFSVDDS---------QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN------ 145 (177)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhc------
Confidence 777788887631 1222233333333332211 14579999999999874332233333332211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
....++++||+++ .+++++++.+.+.+.
T Consensus 146 -----------~~~~~~~~Sa~~~-~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 146 -----------GDYPYFETSAKDA-TNVAAAFEEAVRRVL 173 (177)
T ss_dssp -----------TCCCEEECCTTTC-TTHHHHHHHHHHHHH
T ss_pred -----------CCceEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 0126899999999 999999999877653
No 231
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.41 E-value=9.9e-14 Score=141.72 Aligned_cols=177 Identities=20% Similarity=0.286 Sum_probs=104.9
Q ss_pred EEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecc
Q psy1086 228 VADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNK 307 (654)
Q Consensus 228 i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK 307 (654)
+...||... ...++++++++++|++++|+|+.... ..+. ..+..+ +..+|.++|+||
T Consensus 3 i~w~PGhm~------ka~~~~~~~l~~aDvVl~VvDAr~p~-----~~~~---------~~l~~~---l~~kp~ilVlNK 59 (282)
T 1puj_A 3 IQWFPGHMA------KARREVTEKLKLIDIVYELVDARIPM-----SSRN---------PMIEDI---LKNKPRIMLLNK 59 (282)
T ss_dssp ------CTT------HHHHHHHHHGGGCSEEEEEEETTSTT-----TTSC---------HHHHHH---CSSSCEEEEEEC
T ss_pred CcCCchHHH------HHHHHHHHHHhhCCEEEEEEeCCCCC-----ccCC---------HHHHHH---HCCCCEEEEEEC
Confidence 445677532 23467889999999999999997421 0011 111222 257999999999
Q ss_pred cCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhh
Q psy1086 308 MDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDREL 387 (654)
Q Consensus 308 ~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~ 387 (654)
+|+.... ..+.+.++++.. + .+++++||.++ .++.++.+.+.+.+........
T Consensus 60 ~DL~~~~-~~~~~~~~~~~~-----------------g-~~~i~iSA~~~-~gi~~L~~~i~~~l~~~~~~~~------- 112 (282)
T 1puj_A 60 ADKADAA-VTQQWKEHFENQ-----------------G-IRSLSINSVNG-QGLNQIVPASKEILQEKFDRMR------- 112 (282)
T ss_dssp GGGSCHH-HHHHHHHHHHTT-----------------T-CCEEECCTTTC-TTGGGHHHHHHHHHHHHHHHHH-------
T ss_pred cccCCHH-HHHHHHHHHHhc-----------------C-CcEEEEECCCc-ccHHHHHHHHHHHHHHHHHHHH-------
Confidence 9998643 233333333211 1 15889999999 9999999988877654311000
Q ss_pred hhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEE
Q psy1086 388 ELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVI 466 (654)
Q Consensus 388 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v 466 (654)
..+. .....+++++|.+|+|||||+|++.+... ..+..|++|.+... +
T Consensus 113 -------~~~~----------------------~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~ 161 (282)
T 1puj_A 113 -------AKGV----------------------KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--V 161 (282)
T ss_dssp -------HTTC----------------------CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--E
T ss_pred -------hcCC----------------------CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--E
Confidence 0000 01235899999999999999999999764 44568888887763 3
Q ss_pred EeCCCceEEEEecCCCCCCCc
Q psy1086 467 TFDDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 467 ~~~~~~~~~i~DTpG~~~~~~ 487 (654)
.++. .+.+|||||+.....
T Consensus 162 ~~~~--~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 162 KVGK--ELELLDTPGILWPKF 180 (282)
T ss_dssp EETT--TEEEEECCCCCCSCC
T ss_pred EeCC--CEEEEECcCcCCCCC
Confidence 3443 699999999976543
No 232
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.41 E-value=1.4e-12 Score=136.67 Aligned_cols=194 Identities=14% Similarity=0.120 Sum_probs=105.9
Q ss_pred eeeeeecccceEEEEcCCCCChhhHHHHHHhc------CCCccC-CCccccc--------------ce--eEE-------
Q psy1086 416 AVRLELKLIADIGLVGFPNAGKSTFLKAISRA------RPKIAS-YPFTTIK--------------PN--VGV------- 465 (654)
Q Consensus 416 ~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~------~~~~~~-~~~~t~~--------------~~--~~~------- 465 (654)
++++.+..+..++++|++|+|||||++.+.+. ...+.. .+..+.. ++ ...
T Consensus 47 ~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 126 (337)
T 2qm8_A 47 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSS 126 (337)
T ss_dssp HHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCC
T ss_pred hCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccc
Confidence 56677788899999999999999999999842 221111 1111110 00 000
Q ss_pred ----------------EEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHH
Q psy1086 466 ----------------ITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVET 529 (654)
Q Consensus 466 ----------------v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~ 529 (654)
+...+ ..+.++||||+.+.. ......+|.+++|+|++... ..+.
T Consensus 127 ~~l~G~tr~~~e~~~~~~~~~-~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~---------~~~~ 186 (337)
T 2qm8_A 127 GTLGGVAAKTRETMLLCEAAG-FDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGD---------ELQG 186 (337)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-CCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------------
T ss_pred ccccchHHHHHHHHHHHhcCC-CCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCcc---------cHHH
Confidence 11133 479999999985421 12246899999999986210 0010
Q ss_pred HHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCCh
Q psy1086 530 VLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDV 609 (654)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv 609 (654)
+. ..+ ...|.++|+||+|+...........+.+......+... ...++.+++++||++|. |+
T Consensus 187 i~---~~i-------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~-------~~~~~~~vl~~Sal~g~-gi 248 (337)
T 2qm8_A 187 IK---KGI-------FELADMIAVNKADDGDGERRASAAASEYRAALHILTPP-------SATWTPPVVTISGLHGK-GL 248 (337)
T ss_dssp CC---TTH-------HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCS-------BTTBCCCEEEEBTTTTB-SH
T ss_pred HH---HHH-------hccccEEEEEchhccCchhHHHHHHHHHHHHHHhcccc-------ccCCCCCEEEEeCCCCC-CH
Confidence 10 000 02356788899997543332222222222211111000 00113578999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHh
Q psy1086 610 NDAKLKIRSILDLLAEEEQEMVDRELELVKKLKSSLRE 647 (654)
Q Consensus 610 ~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (654)
++|++.|.+.+....+...-.-.|+........+.+++
T Consensus 249 ~~L~~~I~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 286 (337)
T 2qm8_A 249 DSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHE 286 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987643221111122333344444444444
No 233
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.41 E-value=7.5e-13 Score=123.09 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=98.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|++|||||||++.+.+... ...++.++.......+.+++. ..+.++|+||.... .......+..++
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~~ 76 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTF-IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRDLYIKNGQ 76 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHHhccCC
Confidence 699999999999999999987543 234444444444445555442 24889999996432 222334456677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... .....+.....++..+.. ....|.++|+||+|+...... .+...+.....
T Consensus 77 ~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------- 138 (167)
T 1kao_A 77 GFILVYSLVNQ---------QSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEW-------- 138 (167)
T ss_dssp EEEEEEETTCH---------HHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--------
T ss_pred EEEEEEeCCCH---------HHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHHHHHHHHHh--------
Confidence 88888888631 122233333333332221 247899999999998654322 12222222111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ .+++++||+++ .|++++++.+.+.+.
T Consensus 139 ---------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 139 ---------G-CPFMETSAKSK-TMVDELFAEIVRQMN 165 (167)
T ss_dssp ---------T-SCEEEECTTCH-HHHHHHHHHHHHHHH
T ss_pred ---------C-CCEEEecCCCC-cCHHHHHHHHHHHHh
Confidence 1 25899999999 999999999877653
No 234
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2.8e-13 Score=126.82 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=94.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.|++...... +..+........+..+.. ..+.++|+||.... .......+..++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~~~ 76 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQF-------PAMQRLSISKGH 76 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC-------HHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccccEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHhcccCC
Confidence 689999999999999999998644322 222211111122333321 25799999996432 223344556678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHH-HHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYD-GIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~-~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++.. ...+.+.....++..+.......|.++|+||+|+........ ........
T Consensus 77 ~~i~v~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~--------- 138 (172)
T 2erx_A 77 AFILVYSITSR---------QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART--------- 138 (172)
T ss_dssp EEEEEEETTCH---------HHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH---------
T ss_pred EEEEEEECcCH---------HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHH---------
Confidence 88888888631 122222333333333332334789999999999865432211 11111111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ ..++++||+++ .|++++++.+.+.+
T Consensus 139 --------~~-~~~~~~Sa~~~-~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 139 --------WK-CAFMETSAKLN-HNVKELFQELLNLE 165 (172)
T ss_dssp --------HT-CEEEECBTTTT-BSHHHHHHHHHHTC
T ss_pred --------hC-CeEEEecCCCC-cCHHHHHHHHHHHH
Confidence 01 26899999999 99999999987654
No 235
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.41 E-value=4.8e-13 Score=130.34 Aligned_cols=162 Identities=18% Similarity=0.140 Sum_probs=103.4
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
..+|+++|.+|||||||++.|++........|.++.......+.+++. ..+.++|+||...... + ....+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT----I---TTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC----C---CHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH----H---HHHHhcc
Confidence 347999999999999999999987655455555555566666666542 3689999999653321 1 2334456
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++.+++|+|+... ..+..+..+..++..+.. ...|.++|+||+|+.......+...+.....
T Consensus 93 ~d~ii~v~d~~~~---------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------- 154 (213)
T 3cph_A 93 AMGIILVYDVTDE---------RTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKEL------- 154 (213)
T ss_dssp CSEEEEEEETTCH---------HHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHH-------
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHc-------
Confidence 7888899998631 112222222222222211 3678999999999853322222222222211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++++||+++ .+++++++.+.+.+..
T Consensus 155 ----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 155 ----------G-IPFIESSAKND-DNVNEIFFTLAKLIQE 182 (213)
T ss_dssp ----------T-CCEEECBTTTT-BSSHHHHHHHHHHHHH
T ss_pred ----------C-CEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 15899999999 9999999999876643
No 236
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.41 E-value=3.7e-13 Score=128.97 Aligned_cols=160 Identities=19% Similarity=0.259 Sum_probs=95.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCccccccccc------ccchHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN------LGMGHQFL 249 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~------~~l~~~~l 249 (654)
.+|+++|.+|||||||++.|.+... ...+.+.+|....... .+ ..+.++|+||+....... ..+...++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--VN--SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--ET--TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--EC--CcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4799999999999999999998763 3345666666554432 22 369999999964322110 00111122
Q ss_pred HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH---HHHHHHHhc
Q psy1086 250 RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY---DGIRDTLHN 326 (654)
Q Consensus 250 ~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~---~~l~~~~~~ 326 (654)
+....++++++|+|.... ...... .....+ .. ...|.++|+||+|+....... +.+.+....
T Consensus 100 ~~~~~~~~vi~v~d~~~~---------~~~~~~-~~~~~~----~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIP---------PQDSDL-MMVEWM----KS-LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHCTTEEEEEEEEETTSC---------CCHHHH-HHHHHH----HH-TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred hcCcCceEEEEEecCCCC---------CCHHHH-HHHHHH----HH-cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 211222566777776521 011111 111122 11 378999999999997543322 222222221
Q ss_pred cccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 327 l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
. +..+++++||+++ .|++++++.+.+.+.
T Consensus 165 ~-----------------~~~~~~~~Sa~~~-~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 165 Y-----------------GEYTIIPTSSVTG-EGISELLDLISTLLK 193 (195)
T ss_dssp S-----------------CCSCEEECCTTTC-TTHHHHHHHHHHHHC
T ss_pred c-----------------CCCceEEEecCCC-CCHHHHHHHHHHHhh
Confidence 0 1126899999999 999999999987664
No 237
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.40 E-value=1.2e-12 Score=137.58 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=93.3
Q ss_pred eeecccceEEEEcCCCCChhhHHHHHHhcC------CCc-cCCCccccc-----------------ceeEEE--------
Q psy1086 419 LELKLIADIGLVGFPNAGKSTFLKAISRAR------PKI-ASYPFTTIK-----------------PNVGVI-------- 466 (654)
Q Consensus 419 l~~~~~~~v~~~G~~~~GKstl~~~l~~~~------~~~-~~~~~~t~~-----------------~~~~~v-------- 466 (654)
+....+..|+++|.+|+||||+++.+.+.. ..+ ...++++.. +. ..+
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~-~~i~~~~~~~~ 129 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEA-AFIRPVPSSGH 129 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTT-EEEEEECC---
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCC-ceeecCccccc
Confidence 334556789999999999999999997531 111 111211110 00 000
Q ss_pred ---------------EeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHH
Q psy1086 467 ---------------TFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVL 531 (654)
Q Consensus 467 ---------------~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~ 531 (654)
.+++ ..+.+|||||+.+.. ....+.||++++|+|++... ..+.+.
T Consensus 130 l~g~~~~~~~~~~~~~~~~-~~i~liDTpG~~~~~----------~~~~~~aD~vl~Vvd~~~~~---------~~~~l~ 189 (341)
T 2p67_A 130 LGGASQRARELMLLCEAAG-YDVVIVETVGVGQSE----------TEVARMVDCFISLQIAGGGD---------DLQGIK 189 (341)
T ss_dssp --CHHHHHHHHHHHHHHTT-CSEEEEEEECCTTHH----------HHHHTTCSEEEEEECC---------------CCCC
T ss_pred cchhHHHHHHHHHHhhccC-CCEEEEeCCCccchH----------HHHHHhCCEEEEEEeCCccH---------HHHHHH
Confidence 0223 379999999975421 12358999999999997321 000000
Q ss_pred HHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHH
Q psy1086 532 LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVND 611 (654)
Q Consensus 532 ~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~e 611 (654)
. .. .+.|.++|+||+|+.+...+...+. ++++.+..... ....++.+++++||++|. |+++
T Consensus 190 ~---~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~----~l~~~l~~~~~----~~~~~~~~vi~iSA~~g~-gi~~ 250 (341)
T 2p67_A 190 K---GL-------MEVADLIVINKDDGDNHTNVAIARH----MYESALHILRR----KYDEWQPRVLTCSALEKR-GIDE 250 (341)
T ss_dssp H---HH-------HHHCSEEEECCCCTTCHHHHHHHHH----HHHHHHHHSCC----SBTTBCCEEEECBGGGTB-SHHH
T ss_pred H---hh-------hcccCEEEEECCCCCChHHHHHHHH----HHHHHHHhccc----cccCCCCcEEEeeCCCCC-CHHH
Confidence 0 00 1358899999999986543322111 11111111000 000113568999999999 9999
Q ss_pred HHHHHHHHHHH
Q psy1086 612 AKLKIRSILDL 622 (654)
Q Consensus 612 l~~~i~~~~~~ 622 (654)
|++.|.+.+..
T Consensus 251 L~~~l~~~~~~ 261 (341)
T 2p67_A 251 IWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 238
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.40 E-value=1.1e-13 Score=140.85 Aligned_cols=157 Identities=26% Similarity=0.465 Sum_probs=106.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccc--cchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL--GMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~--~l~~~~l~~i~~ 254 (654)
.+|+|+|.||||||||+++|+|....+.++|.+|.....+.+.+.+ ..+.++|+||+........ .+...++. ...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~ 81 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLTAHSIDELIARNFIL-DGN 81 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT-EEEEEEECCCCSCCCSSCHHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC-ceEEEEeCCCccccccCCHHHHHHHHhhh-ccC
Confidence 3799999999999999999999888788999999999999998876 4799999999875432210 01111110 134
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhcccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHI 331 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l~~~i 331 (654)
+|++++|+|++.. ...+ ....++. .+...|.++++||+|+...... ...+.+.+.
T Consensus 82 ~d~vi~v~D~~~~-----------~~~~-~~~~~~~----~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg------ 139 (271)
T 3k53_A 82 ADVIVDIVDSTCL-----------MRNL-FLTLELF----EMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG------ 139 (271)
T ss_dssp CSEEEEEEEGGGH-----------HHHH-HHHHHHH----HTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS------
T ss_pred CcEEEEEecCCcc-----------hhhH-HHHHHHH----hcCCCCEEEEEEChhcCcccccHHHHHHHHHHcC------
Confidence 6677778887631 1111 1111111 1223899999999998643321 222222221
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+++++||.++ .|++++++.+.+.+.
T Consensus 140 ---------------~~~~~~Sa~~g-~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 140 ---------------VPVIPTNAKKG-EGVEELKRMIALMAE 165 (271)
T ss_dssp ---------------SCEEECBGGGT-BTHHHHHHHHHHHHH
T ss_pred ---------------CcEEEEEeCCC-CCHHHHHHHHHHHHh
Confidence 26899999999 999999999887653
No 239
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.40 E-value=1.6e-13 Score=131.85 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=90.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC--CCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc---ccchHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRAR--PKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN---LGMGHQFLRH 251 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~--~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~---~~l~~~~l~~ 251 (654)
.+|+++|.+|||||||++.|.+.. +...+.+.+|....... .+ ..+.++|+||+....... ..+.......
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN--DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET--TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC--CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 479999999999999999999864 33456666666654433 33 369999999965432110 0111111122
Q ss_pred HHHH---HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccc
Q psy1086 252 VERT---KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLK 328 (654)
Q Consensus 252 i~~~---~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~ 328 (654)
+..+ +++++|+|+... ...... ++..+... ...|.++|+||+|+...........+..+.+.
T Consensus 100 ~~~~~~~~~~i~v~d~~~~---------~~~~~~-----~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 164 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHA---------PSNDDV-----QMYEFLKY-YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN 164 (195)
T ss_dssp HHHCTTEEEEEEEEETTSC---------CCHHHH-----HHHHHHHH-TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred HhhhhcCCEEEEEEECCCC---------CCHHHH-----HHHHHHHH-cCCCEEEEEECcccCChHHHHHHHHHHHHHHc
Confidence 2223 677778887631 111111 11111111 56899999999999865443222211111111
Q ss_pred cccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 329 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 329 ~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
. .....++++||+++ .|++++++.+.+.+
T Consensus 165 ~--------------~~~~~~~~~Sa~~~-~gv~~l~~~l~~~l 193 (195)
T 1svi_A 165 I--------------DPEDELILFSSETK-KGKDEAWGAIKKMI 193 (195)
T ss_dssp C--------------CTTSEEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred c--------------cCCCceEEEEccCC-CCHHHHHHHHHHHh
Confidence 0 01136899999999 99999999987665
No 240
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=5.7e-13 Score=127.71 Aligned_cols=159 Identities=18% Similarity=0.094 Sum_probs=99.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|||||||+++|++........+..+.......+.+++. ..+.++|+||...... + ....+..+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 88 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT----L---TPSYYRGA 88 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC----S---HHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh----h---hHHHhccC
Confidence 37999999999999999999986544333343334444455555432 3589999999643221 2 23345567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchHhHHHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|+... ..+......+..+... ....|.++|+||+|+.......+...++....
T Consensus 89 d~ii~v~d~~~~------------~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------ 150 (195)
T 1x3s_A 89 QGVILVYDVTRR------------DTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH------ 150 (195)
T ss_dssp CEEEEEEETTCH------------HHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT------
T ss_pred CEEEEEEECcCH------------HHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc------
Confidence 888899988631 1222222222222221 13678899999999854322222222222211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++++||+++ .+++++++.+.+.+.
T Consensus 151 -----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 151 -----------S-MLFIEASAKTC-DGVQCAFEELVEKII 177 (195)
T ss_dssp -----------T-CEEEECCTTTC-TTHHHHHHHHHHHHH
T ss_pred -----------C-CEEEEecCCCC-CCHHHHHHHHHHHHH
Confidence 1 25889999999 999999999887664
No 241
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.40 E-value=1.6e-12 Score=120.65 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=98.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+.+... ...++.++.......+..++. ..+.++|+||..... ......+..++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~ 76 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF-VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTGE 76 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccCC
Confidence 689999999999999999997543 334444444443444555442 247899999964321 22334455677
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++++|+... .....+..+..++..+.. ....|.++++||+|+.......+...+.....
T Consensus 77 ~~i~v~d~~~~---------~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--------- 137 (166)
T 2ce2_X 77 GFLCVFAINNT---------KSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTVESRQAQDLARSY--------- 137 (166)
T ss_dssp EEEEEEETTCH---------HHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH---------
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcccCHHHHHHHHHHc---------
Confidence 88888887631 122223223333332221 13689999999999876332223333322211
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ .+++++||+++ .+++++++.+.+.+
T Consensus 138 --------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 138 --------G-IPYIETSAKTR-QGVEDAFYTLVREI 163 (166)
T ss_dssp --------T-CCEEEECTTTC-TTHHHHHHHHHHHH
T ss_pred --------C-CeEEEecCCCC-CCHHHHHHHHHHHH
Confidence 1 15899999999 99999999988665
No 242
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.40 E-value=4e-13 Score=126.73 Aligned_cols=158 Identities=12% Similarity=0.128 Sum_probs=100.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.|++........+.++.......+.+++. ..+.++|+||...... .....+..++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~d 88 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDST 88 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GSHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-------HHHHHhcCCC
Confidence 7999999999999999999986655445555555566666666542 2589999999643221 1234456678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... .....+.....++.... ....|.++|+||+|+...... .+.........
T Consensus 89 ~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------- 149 (179)
T 2y8e_A 89 VAVVVYDITNT---------NSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-------- 149 (179)
T ss_dssp EEEEEEETTCH---------HHHHTHHHHHHHHHHHH--TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH--------
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccCcCCHHHHHHHHHHc--------
Confidence 88889988631 11222222222222211 146788999999998654321 12222222111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++.+||+++ .+++++++.+.+.+
T Consensus 150 ---------~-~~~~~~Sa~~~-~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 150 ---------N-VMFIETSAKAG-YNVKQLFRRVAAAL 175 (179)
T ss_dssp ---------T-CEEEEEBTTTT-BSHHHHHHHHHHTC
T ss_pred ---------C-CeEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 1 26899999999 99999999987654
No 243
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.40 E-value=4.2e-13 Score=135.59 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=104.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCc--cccccceEEEEeCCCccEEEEecCcccccccccccchHHHHH----H
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPF--TTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLR----H 251 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~--tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~----~ 251 (654)
+|+|+|.+|||||||+++|++....+..+.. +|.....+.+.+.+ ..+.++||||+.........+...+.+ .
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 102 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-REIVIIDTPDMFSWKDHCEALYKEVQRCYLLS 102 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999999999998766665543 67788888888876 589999999987654332222112222 2
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeec-ccCccchHhHHHH--------HHH
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVN-KMDVEGAQEIYDG--------IRD 322 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlN-K~D~~~~~~~~~~--------l~~ 322 (654)
+..+|++++|+|+..+ . .........+..+...-...|.++++| |+|+... ..... +.+
T Consensus 103 ~~~~d~il~V~d~~~~---------~--~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~ 170 (260)
T 2xtp_A 103 APGPHVLLLVTQLGRY---------T--SQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSK 170 (260)
T ss_dssp TTCCSEEEEEEETTCC---------C--HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHH
T ss_pred CCCCcEEEEEEeCCCC---------C--HHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHH
Confidence 3345677788877531 1 111112222322222112567888887 9999743 22221 111
Q ss_pred HHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 323 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 323 ~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
....+.. .+ ..+.. +++||+++ .|++++++.+.+.+..
T Consensus 171 ~~~~~~~-------~~-----~~~~~-~~~SA~~~-~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 171 LVAACGG-------RI-----CAFNN-RAEGSNQD-DQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHTTT-------CE-----EECCT-TCCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-------eE-----EEecC-cccccccH-HHHHHHHHHHHHHHHh
Confidence 2221111 00 00112 78899999 9999999999887765
No 244
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.40 E-value=2.7e-13 Score=130.24 Aligned_cols=173 Identities=19% Similarity=0.177 Sum_probs=101.5
Q ss_pred eEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHH
Q psy1086 168 AVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQ 247 (654)
Q Consensus 168 ~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~ 247 (654)
++++..+.. +|+++|.+|||||||++++++.... .+ ..|..+..+.+.+++ ..+.++|+||...... +..
T Consensus 16 ~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~----~~~- 85 (190)
T 1m2o_B 16 SLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGN-IKFTTFDLGGHIQARR----LWK- 85 (190)
T ss_dssp --------C-EEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETT-EEEEEEECCCSGGGTT----SGG-
T ss_pred HhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECC-EEEEEEECCCCHHHHH----HHH-
Confidence 445554444 8999999999999999999986532 23 235666778888876 6899999999754322 111
Q ss_pred HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcc
Q psy1086 248 FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 327 (654)
Q Consensus 248 ~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l 327 (654)
..+..++.+++|+|++.. ..+........++... ......|.++|+||+|+... ...+++.+.+...
T Consensus 86 --~~~~~~d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~ 152 (190)
T 1m2o_B 86 --DYFPEVNGIVFLVDAADP---------ERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNA-VSEAELRSALGLL 152 (190)
T ss_dssp --GGCTTCCEEEEEEETTCG---------GGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCS
T ss_pred --HHHhcCCEEEEEEECCCh---------HHHHHHHHHHHHHHcc-hhhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCc
Confidence 123456788888888742 1223222222222211 12356899999999999752 1233444443321
Q ss_pred ccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 328 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
. ....... .......++++||+++ .|++++++.+.+
T Consensus 153 ~----~~~~~~~--~~~~~~~~~~~Sa~~g-~gi~~l~~~l~~ 188 (190)
T 1m2o_B 153 N----TTGSQRI--EGQRPVEVFMCSVVMR-NGYLEAFQWLSQ 188 (190)
T ss_dssp S----CCC---C--CSSCCEEEEECBTTTT-BSHHHHHHHHHT
T ss_pred c----ccccccc--cccceEEEEEeECCcC-CCHHHHHHHHHh
Confidence 1 0000000 0001136899999999 999999998764
No 245
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.39 E-value=7.8e-13 Score=123.18 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=97.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++++.+... ...++.|+.......+.+++. ..+.++|+||...... .....+..++
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d 76 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLYMKNGQ 76 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHhccCC
Confidence 689999999999999999998543 334444443333333444331 2578999999653221 2234455678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... ..+..+.....++..+. .....|.++|+||+|+...... .+...+.....
T Consensus 77 ~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------- 138 (167)
T 1c1y_A 77 GFALVYSITAQ---------STFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-------- 138 (167)
T ss_dssp EEEEEEETTCH---------HHHHTHHHHHHHHHHHH-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--------
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhh-CcCCCcEEEEEECccccccccCCHHHHHHHHHHc--------
Confidence 88888888631 11222222222222221 1247899999999999754321 22222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
...+++++||+++ .|++++++.+.+.+
T Consensus 139 ---------~~~~~~~~Sa~~~-~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 139 ---------CNCAFLESSAKSK-INVNEIFYDLVRQI 165 (167)
T ss_dssp ---------TSCEEEECBTTTT-BSHHHHHHHHHHHH
T ss_pred ---------cCCcEEEecCCCC-CCHHHHHHHHHHHH
Confidence 0126899999999 99999999987654
No 246
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.39 E-value=4.8e-13 Score=128.11 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=104.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|.+|||||||++.|++.......+. .|.......+.+++ ..+.++|+||....... +...+..++
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~-------~~~~~~~~d 92 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSS-LSFTVFDMSGQGRYRNL-------WEHYYKEGQ 92 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSS-CEEEEEEECCSTTTGGG-------GGGGGGGCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECC-EEEEEEECCCCHHHHHH-------HHHHHhcCC
Confidence 3799999999999999999998764444443 34556667777765 58999999996543221 123345678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--h--cCcceeEeecccCccchHhHHHHHHHHHhccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--L--LEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l--~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~ 332 (654)
.+++|+|++.. ..+......+..+... + ...|.++|+||+|+..... .+++.+.+.. ..
T Consensus 93 ~ii~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~-~~--- 155 (190)
T 2h57_A 93 AIIFVIDSSDR------------LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCL-EN--- 155 (190)
T ss_dssp EEEEEEETTCH------------HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTG-GG---
T ss_pred EEEEEEECCCH------------HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC-HHHHHHHhCh-hh---
Confidence 88899998631 2233333333333322 1 4689999999999975322 2333333321 00
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+.. . ...++.+||+++ .|++++++.+.+.+..
T Consensus 156 -~~~-------~-~~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 156 -IKD-------K-PWHICASDAIKG-EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp -CCS-------S-CEEEEECBTTTT-BTHHHHHHHHHHHC--
T ss_pred -ccC-------C-ceEEEEccCCCC-cCHHHHHHHHHHHHHH
Confidence 000 0 126899999999 9999999999876643
No 247
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.39 E-value=7.1e-13 Score=126.73 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=97.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccc-eEEEEeCCC----------ccEEEEecCcccccccccccchH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN-VGVITFDDF----------RKMSVADLPGLIEGAHRNLGMGH 246 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~-~G~v~~~~~----------~~~~i~D~PGl~~~~~~~~~l~~ 246 (654)
+|+|+|.+|||||||++.|++........+....... ...+.+++. ..+.++|+||... +..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~ 85 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------FRS 85 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------GHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------HHH
Confidence 7999999999999999999986543222222222222 223444331 3689999999632 222
Q ss_pred HHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh--cCcceeEeecccCccchHhH-HHHHHHH
Q psy1086 247 QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL--LEKPIILLVNKMDVEGAQEI-YDGIRDT 323 (654)
Q Consensus 247 ~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l--~~~P~ilvlNK~D~~~~~~~-~~~l~~~ 323 (654)
.....+..++.+++|+|+... ..+......+..+.... ...|.++|+||+|+...... .+...+.
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~------------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNE------------QSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL 153 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCH------------HHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEECCCH------------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 344445667888888888631 12222222222222221 46899999999998653221 2222222
Q ss_pred HhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 324 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 324 ~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.... + ..++++||+++ .+++++++.+.+.+..
T Consensus 154 ~~~~-----------------~-~~~~~~Sa~~~-~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 154 AEKY-----------------G-IPYFETSAANG-TNISHAIEMLLDLIMK 185 (195)
T ss_dssp HHHH-----------------T-CCEEECCTTTC-TTHHHHHHHHHHHHHH
T ss_pred HHHc-----------------C-CCEEEEECCCC-CCHHHHHHHHHHHHHH
Confidence 2211 1 15899999999 9999999999877654
No 248
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=146.19 Aligned_cols=120 Identities=29% Similarity=0.539 Sum_probs=73.9
Q ss_pred eecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC----------------ccEEEEecCccccc
Q psy1086 174 KLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF----------------RKMSVADLPGLIEG 237 (654)
Q Consensus 174 k~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~----------------~~~~i~D~PGl~~~ 237 (654)
..+.+|+|||+||||||||+|+|++....+++|||+|+.|+.|.+.+++. ..+.++|+||+..+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34568999999999999999999999888899999999999999987642 24899999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCC--CccChHHHHHHHHHHHHHHhH
Q psy1086 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH--PKRSCVETVLLLNKELELYKM 294 (654)
Q Consensus 238 ~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~--~~~~~~~~l~~~~~el~~~~~ 294 (654)
++.+.+++..|+.++..+|++++|+|+.+.. .+.+ ...+|+.++..+..++..+..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~-~i~~v~~~~dP~~di~~i~~El~l~d~ 157 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD-DITHVEGSVDPIRDIEIIHEELQLKDE 157 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-------------CTTHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc-chhhhcCCCChHHHHHHhhhhhhhhhH
Confidence 8888889999999999999999999987421 1111 123678888888888766554
No 249
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.39 E-value=3.7e-12 Score=141.76 Aligned_cols=127 Identities=18% Similarity=0.269 Sum_probs=88.1
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCCC----------------c------cCCCcccccceeEEEEeCCCceEEEEec
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARPK----------------I------ASYPFTTIKPNVGVITFDDFRKMSVADL 479 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~----------------~------~~~~~~t~~~~~~~v~~~~~~~~~i~DT 479 (654)
.+..+|+++|+.++|||||..+|+..... . .-..++|+......+.|++ ..+.|+||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~-~~iNlIDT 107 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD-RVVNLLDT 107 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT-EEEEEECC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC-EEEEEEeC
Confidence 34568999999999999999999632111 1 1256888888888999998 48999999
Q ss_pred CCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc
Q psy1086 480 PGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 559 (654)
Q Consensus 480 pG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~ 559 (654)
||.. .|..++.+.++-+|++++|+|+... + ..++...|..- ...+.|.|+++||+|..
T Consensus 108 PGHv-------DF~~Ev~raL~~~DgAvlVvda~~G---V------~~qT~~v~~~a------~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 108 PGHQ-------DFSEDTYRVLTAVDSALVVIDAAKG---V------EAQTRKLMDVC------RMRATPVMTFVNKMDRE 165 (548)
T ss_dssp CCGG-------GCSHHHHHHHHSCSEEEEEEETTTB---S------CHHHHHHHHHH------HHTTCCEEEEEECTTSC
T ss_pred CCcH-------HHHHHHHHHHHhcCceEEEeecCCC---c------ccccHHHHHHH------HHhCCceEEEEecccch
Confidence 9954 4667777999999999999999843 2 22333344322 23579999999999987
Q ss_pred Ch--HHHHHHHHHH
Q psy1086 560 GA--QEIYDGIRDT 571 (654)
Q Consensus 560 ~~--~~v~~~~~~~ 571 (654)
.. ..+.+++.+.
T Consensus 166 ~ad~~~~~~~i~~~ 179 (548)
T 3vqt_A 166 ALHPLDVMADIEQH 179 (548)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred hcchhHhhhhhhhh
Confidence 54 3344444433
No 250
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.39 E-value=5.4e-13 Score=128.46 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=100.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+|+|.+|||||||++.|++......+|.. |.......+.... ..+.++|+||....... ....+..++
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~-------~~~~~~~~d 88 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGR-VAFTVFDMGGAKKFRGL-------WETYYDNID 88 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETT-EEEEEEEECCSGGGGGG-------GGGGCTTCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCC-EEEEEEECCCCHhHHHH-------HHHHHhcCC
Confidence 37999999999999999999987655433333 3334455555444 57999999997543222 112345678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh-------cCcceeEeecccCccchHhHHHHHHHHHhcccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL-------LEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKD 329 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l-------~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~ 329 (654)
++++|+|+... ..+..+.....++..... + ...|.++|+||+|+..... .+++.+.+... .
T Consensus 89 ~ii~v~D~~~~---------~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~-~ 156 (199)
T 4bas_A 89 AVIFVVDSSDH---------LRLCVVKSEIQAMLKHED-IRRELPGGGRVPFLFFANKMDAAGAKT-AAELVEILDLT-T 156 (199)
T ss_dssp EEEEEEETTCG---------GGHHHHHHHHHHHHTSHH-HHSBCTTSCBCCEEEEEECTTSTTCCC-HHHHHHHHTHH-H
T ss_pred EEEEEEECCcH---------HHHHHHHHHHHHHHhChh-hhhcccccCCCCEEEEEECcCCCCCCC-HHHHHHHhcch-h
Confidence 88999998742 222333222222221111 1 2789999999999976522 22222222110 0
Q ss_pred ccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 330 HIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 330 ~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
... ... ..++.+||+++ .+++++++.|.+.+...
T Consensus 157 ~~~----------~~~-~~~~~~Sa~~g-~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 157 LMG----------DHP-FVIFASNGLKG-TGVHEGFSWLQETASRQ 190 (199)
T ss_dssp HHT----------TSC-EEEEECBTTTT-BTHHHHHHHHHHHHHHH
T ss_pred hcc----------CCe-eEEEEeeCCCc-cCHHHHHHHHHHHHHHH
Confidence 000 001 26899999999 99999999998776543
No 251
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.38 E-value=4.3e-13 Score=126.59 Aligned_cols=164 Identities=21% Similarity=0.202 Sum_probs=105.6
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
..+|+++|.+|||||||++.|++.......++.+|.......+.+++ ..+.++|+||......... ..+..+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~-------~~~~~~ 79 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-KKITFLDTPGHEAFTTMRA-------RGAQVT 79 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT-EEEEESCCCSSSSSSCSCC-------SSCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC-ceEEEEECCCCHHHHHHHH-------HHHhhC
Confidence 34799999999999999999999776666677777777777777776 5799999999754432211 223346
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++++|+|+... .....+..+ ..+. ....|.++|+||+|+.... .+.+...+.........
T Consensus 80 d~~i~v~d~~~~---------~~~~~~~~l----~~~~--~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~-- 140 (178)
T 2lkc_A 80 DIVILVVAADDG---------VMPQTVEAI----NHAK--AANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEE-- 140 (178)
T ss_dssp CEEEEEEETTCC---------CCHHHHHHH----HHHG--GGSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTT--
T ss_pred CEEEEEEECCCC---------CcHHHHHHH----HHHH--hCCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhH--
Confidence 677888887631 111222211 1111 2478999999999997532 12222222221111100
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
......++++||+++ .|++++++.+.+.+..
T Consensus 141 -------~~~~~~~~~~Sa~~~-~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 141 -------WGGDTIFCKLSAKTK-EGLDHLLEMILLVSEM 171 (178)
T ss_dssp -------TTSSEEEEECCSSSS-HHHHHHHHHHHHHHHH
T ss_pred -------cCCcccEEEEecCCC-CCHHHHHHHHHHhhhh
Confidence 001126899999999 9999999999876654
No 252
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.38 E-value=5.9e-13 Score=124.30 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=96.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++++.+........|..+.......+.+++. ..+.++|+||..... ......+..++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d 77 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNAQ 77 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccCc
Confidence 6899999999999999999986544333344444444455555432 268999999964322 12334455678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccch---HhHH-HHHHHHHhcccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGA---QEIY-DGIRDTLHNLKDHI 331 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~~---~~~~-~~l~~~~~~l~~~i 331 (654)
.+++|+|++.. ..+......+..+... ....|.++|+||+|+... .... +...+.....
T Consensus 78 ~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~---- 141 (170)
T 1ek0_A 78 AALVVYDVTKP------------QSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK---- 141 (170)
T ss_dssp EEEEEEETTCH------------HHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH----
T ss_pred EEEEEEecCCh------------HHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc----
Confidence 88888888631 1222222222222221 136788899999998653 1111 1111111110
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++++||+++ .+++++++.+.+.+
T Consensus 142 -------------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 142 -------------G-LLFFETSAKTG-ENVNDVFLGIGEKI 167 (170)
T ss_dssp -------------T-CEEEECCTTTC-TTHHHHHHHHHTTS
T ss_pred -------------C-CEEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 1 26899999999 99999999886543
No 253
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.38 E-value=7.9e-13 Score=127.76 Aligned_cols=174 Identities=17% Similarity=0.103 Sum_probs=97.5
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHH
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVE 253 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~ 253 (654)
...+|+++|.+|||||||++.+.+.. ....|+.|+.......+.+++. ..+.++|+||....... .. ..+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~~---~~~~ 90 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL----RP---LCYT 90 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS----GG---GGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH----hH---hhcC
Confidence 34579999999999999999999865 4456777766555555655542 24679999997543322 11 2234
Q ss_pred HHHHHHHhhcccCcccCCCCCccChHHHHH-HHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccc
Q psy1086 254 RTKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 254 ~~~~il~vvd~~~~~l~~~~~~~~~~~~l~-~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~ 332 (654)
.++.+++|+|++.. ..+..+. .+..++ .......|.++|+||+|+.........+.+.... .+.
T Consensus 91 ~~~~~i~v~d~~~~---------~s~~~~~~~~~~~~---~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~v~ 155 (201)
T 2q3h_A 91 NTDIFLLCFSVVSP---------SSFQNVSEKWVPEI---RCHCPKAPIILVGTQSDLREDVKVLIELDKCKEK---PVP 155 (201)
T ss_dssp TCSEEEEEEETTCH---------HHHHHHHHTHHHHH---HHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCC---CCC
T ss_pred CCcEEEEEEECCCH---------HHHHHHHHHHHHHH---HHhCCCCCEEEEEECHhhhhchhhhhhhcccccc---cCC
Confidence 57788888888631 1222221 122222 2223478999999999997543222111100000 000
Q ss_pred cCCCcc-chhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 333 KYPEEF-QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 333 ~~~~~~-~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.... .-....+...++.+||+++ .|++++++.+.+.+..
T Consensus 156 --~~~~~~~~~~~~~~~~~~~Sa~~g-~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 156 --EEAAKLLAEEIKAASYIECSALTQ-KNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp --HHHHHHHHHHHTCSEEEECCTTTC-TTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCcEEEEEecCCC-CCHHHHHHHHHHHHhc
Confidence 0000 0000112236899999999 9999999998876543
No 254
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.38 E-value=5.7e-13 Score=129.36 Aligned_cols=162 Identities=20% Similarity=0.182 Sum_probs=103.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+|+|.+|||||||++.|++........|..+.......+.+++. ..+.++|+||....... ....+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI-------TSSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC-------CGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH-------HHHhccCC
Confidence 37999999999999999999987655445565555666666666542 26899999996543222 11233456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... ..+..+..+..++..+. ....|.++|+||+|+...... .+...++....
T Consensus 82 d~vilv~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 143 (206)
T 2bcg_Y 82 HGIIIVYDVTDQ---------ESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN------- 143 (206)
T ss_dssp SEEEEEEETTCH---------HHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-------
Confidence 788889988631 12222222222222221 135788999999999753221 12222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
+ ..++++||+++ .+++++++.+.+.+...
T Consensus 144 ----------~-~~~~~~Sa~~g-~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 144 ----------K-MPFLETSALDS-TNVEDAFLTMARQIKES 172 (206)
T ss_dssp ----------T-CCEEECCTTTC-TTHHHHHHHHHHHHHHH
T ss_pred ----------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHHH
Confidence 1 25899999999 99999999998776543
No 255
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.38 E-value=1.1e-12 Score=122.73 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=94.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+++........|..+.......+.+++. ..+.++|+||........ ...+..++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~~d 80 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG-------PIYYRDSN 80 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH-------HHHhccCC
Confidence 7999999999999999999986544333343333334445555432 257899999964332211 11233567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... .....+.....++..+. ....|.++|+||+|+...... .+...+.....
T Consensus 81 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------- 141 (170)
T 1z08_A 81 GAILVYDITDE---------DSFQKVKNWVKELRKML--GNEICLCIVGNKIDLEKERHVSIQEAESYAESV-------- 141 (170)
T ss_dssp EEEEEEETTCH---------HHHHHHHHHHHHHHHHH--GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT--------
T ss_pred EEEEEEECcCH---------HHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccccCHHHHHHHHHHc--------
Confidence 78888887631 12222222222222221 146788999999999653221 22222222211
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++++||+++ .|++++++.+.+.+
T Consensus 142 ---------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 142 ---------G-AKHYHTSAKQN-KGIEELFLDLCKRM 167 (170)
T ss_dssp ---------T-CEEEEEBTTTT-BSHHHHHHHHHHHH
T ss_pred ---------C-CeEEEecCCCC-CCHHHHHHHHHHHH
Confidence 1 26889999999 99999999987655
No 256
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.38 E-value=1.9e-12 Score=121.97 Aligned_cols=158 Identities=20% Similarity=0.195 Sum_probs=97.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCcc-ccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFT-TIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~t-Tl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.+|+++|.+|||||||++.|.+.... ..++.+ +.......+.+++ ...+.++|+||... +.......+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 87 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYYRG 87 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG-------TCHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChH-------hhhhHHHHhcc
Confidence 37999999999999999999986543 333332 2223333444443 13589999999543 22234455667
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
++.+++|+|+... .....+..+..++..+. -...|.++|+||+|+...... .++..++....
T Consensus 88 ~d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------ 150 (179)
T 1z0f_A 88 AAGALMVYDITRR---------STYNHLSSWLTDARNLT--NPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN------ 150 (179)
T ss_dssp CSEEEEEEETTCH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT------
T ss_pred CCEEEEEEeCcCH---------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHHc------
Confidence 7888999998631 12222222222222221 146789999999999643221 22333332211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++++||+++ .+++++++.+.+.+
T Consensus 151 -----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 151 -----------G-LLFLEASAKTG-ENVEDAFLEAAKKI 176 (179)
T ss_dssp -----------T-CEEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred -----------C-CEEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 1 26899999999 99999999887654
No 257
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=7.1e-13 Score=127.58 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=96.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccce-EEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV-GVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~-G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|||||||+++|++..... .+.. |..... ..+..+. ...+.++|+||.... .......+..+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 80 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGTFRD-TYIP-TIEDTYRQVISCDKSVCTLQITDTTGSHQF-------PAMQRLSISKG 80 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCC-TTSC-CCCEEEEEEEEETTEEEEEEEEECCGGGSC-------HHHHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC-cccC-ccccceeEEEEECCEEEEEEEEeCCChHHh-------HHHHHHhhccC
Confidence 79999999999999999999854432 2221 222221 1222332 125789999996432 22233445667
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++|+|++.. ..+..+......+..+.......|.++|+||+|+.......+.........
T Consensus 81 d~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------- 143 (199)
T 2gf0_A 81 HAFILVFSVTSK---------QSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW-------- 143 (199)
T ss_dssp SEEEEEEETTCH---------HHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH--------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh--------
Confidence 888888888631 122222222333333322234679999999999975322222222222111
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++++||+++ .|++++++.+.+.+.
T Consensus 144 ---------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 144 ---------K-CAFMETSAKMN-YNVKELFQELLTLET 170 (199)
T ss_dssp ---------T-CEEEECBTTTT-BSHHHHHHHHHHHCS
T ss_pred ---------C-CeEEEEecCCC-CCHHHHHHHHHHHHh
Confidence 1 26899999999 999999999887654
No 258
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.37 E-value=8.5e-13 Score=124.91 Aligned_cols=160 Identities=17% Similarity=0.079 Sum_probs=98.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|+|||||++.+++........+..+.......+.+++ ...+.++|+||...... .....+..+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-------LAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG-------GTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh-------hhHHHhccC
Confidence 3799999999999999999998654433333333333344454543 23689999999643221 123344567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|++.. ..+......+..+... ....|.++|+||+|+...... .++..+.....
T Consensus 86 d~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~------ 147 (181)
T 2efe_B 86 AAAIIVFDVTNQ------------ASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN------ 147 (181)
T ss_dssp SEEEEEEETTCH------------HHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT------
T ss_pred CEEEEEEECCCH------------HHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc------
Confidence 888889888631 1222222222222221 136788999999999653321 22233222211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++++||+++ .+++++++.+.+.+..
T Consensus 148 -----------~-~~~~~~Sa~~g-~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 148 -----------G-LFFMETSAKTA-TNVKEIFYEIARRLPR 175 (181)
T ss_dssp -----------T-CEEEECCSSSC-TTHHHHHHHHHHTCC-
T ss_pred -----------C-CEEEEEECCCC-CCHHHHHHHHHHHHHh
Confidence 1 25899999999 9999999998876543
No 259
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.37 E-value=5.5e-13 Score=126.92 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=102.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||++.|.+........+.++.......+.+++. ..+.++|+||.... .......+..+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHHhcC
Confidence 47999999999999999999987665555555555555566666542 26889999996432 22233344567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|++.. .....+.....++..+. -...|.++|+||+|+...... .++..+.....
T Consensus 84 d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 145 (186)
T 2bme_A 84 AGALLVYDITSR---------ETYNALTNWLTDARMLA--SQNIVIILCGNKKDLDADREVTFLEASRFAQEN------- 145 (186)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHHc-------
Confidence 788888888631 12222222222222221 146789999999999643221 12222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+.+.+..
T Consensus 146 ----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 146 ----------E-LMFLETSALTG-ENVEEAFVQCARKILN 173 (186)
T ss_dssp ----------T-CEEEECCTTTC-TTHHHHHHHHHHHHHH
T ss_pred ----------C-CEEEEecCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999998776543
No 260
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=4.2e-13 Score=130.24 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=100.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+|+|.+|||||||++.|.+........+..+.+.....+.+++. ..+.++|+||.... .......+..+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHHhcC
Confidence 37999999999999999999886554444444444444556666542 25899999996322 12223334567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|++.. ..+..+.....++..+. -...|.++|+||+|+...... .+...++....
T Consensus 100 d~~i~v~D~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~------- 161 (201)
T 2ew1_A 100 NALILTYDITCE---------ESFRCLPEWLREIEQYA--SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ------- 161 (201)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-------
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-------
Confidence 788888888631 12222222222332221 135788999999999753221 12222221110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++++||+++ .|++++++.+.+.+..
T Consensus 162 ----------~-~~~~~~Sa~~g-~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 162 ----------D-MYYLETSAKES-DNVEKLFLDLACRLIS 189 (201)
T ss_dssp ----------T-CCEEECCTTTC-TTHHHHHHHHHHHHHH
T ss_pred ----------C-CEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 25899999999 9999999998876643
No 261
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.37 E-value=6.6e-13 Score=127.37 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=98.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.|++........+..+.......+.+++. ..+.++|+||...... +. ...+..++
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~---~~~~~~~d 95 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS----IT---RSYYRGAA 95 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC----CC---HHHHTTCS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh----hH---HHHhccCC
Confidence 6999999999999999999987655444454455555556666542 3689999999653322 22 23345578
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++.. .....+.....++..+. ....|.++|+||+|+...... .++..++....
T Consensus 96 ~ii~v~d~~~~---------~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------- 156 (191)
T 2a5j_A 96 GALLVYDITRR---------ETFNHLTSWLEDARQHS--SSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-------- 156 (191)
T ss_dssp EEEEEEETTCH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCCccccCHHHHHHHHHHc--------
Confidence 88889998631 12222222222222211 136788999999999653221 12222222110
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+.+.+..
T Consensus 157 ---------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 157 ---------G-LIFMETSAKTA-CNVEEAFINTAKEIYR 184 (191)
T ss_dssp ---------T-CEEEEECTTTC-TTHHHHHHHHHHHHHH
T ss_pred ---------C-CEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26889999999 9999999998776543
No 262
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.37 E-value=1.6e-12 Score=123.35 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=99.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||+++|++. .....++.++.......+..++. ..+.++|+||..... .+ ....+..++
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~---~~~~~~~~d 91 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK-IFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----AM---REQYMRTGD 91 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS-CCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----SS---HHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhC-CCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----HH---HHHHHhcCC
Confidence 7899999999999999999975 33445555555444555555542 135679999964322 12 233456688
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... ..+..+.....++..+. .....|.++|+||+|+...... .++..+.....
T Consensus 92 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-------- 153 (183)
T 3kkq_A 92 GFLIVYSVTDK---------ASFEHVDRFHQLILRVK-DRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-------- 153 (183)
T ss_dssp EEEEEEETTCH---------HHHHTHHHHHHHHHHHH-TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH--------
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh--------
Confidence 88899998731 12222222222232221 2256789999999998653221 12222222211
Q ss_pred CccchhhhcccceEEEeecc-cCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAK-TNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~-~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++++||+ ++ .+++++++.+.+.+.
T Consensus 154 ---------~-~~~~~~Sa~~~~-~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 154 ---------N-IPYIETSAKDPP-LNVDKTFHDLVRVIR 181 (183)
T ss_dssp ---------T-CCEEEEBCSSSC-BSHHHHHHHHHHHHH
T ss_pred ---------C-CeEEEeccCCCC-CCHHHHHHHHHHHHh
Confidence 1 258999999 99 999999999887654
No 263
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=126.53 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=102.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+|||.+|||||||++.+++.......+|.++.......+.+++. ..+.+||+||...... .+ ....+..+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~---~~~~~~~~ 97 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG---WL---RDHCLQTG 97 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH---HH---HHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh---hh---HHHhhccC
Confidence 37999999999999999999876555556666676666677766652 2467899999643210 01 11234567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchHhH-HHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~ 332 (654)
+++++|+|++.. ..+......+..+... ....|.++|.||+|+...... .++..++....
T Consensus 98 d~~ilv~d~~~~------------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~----- 160 (195)
T 3cbq_A 98 DAFLIVFSVTDR------------RSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL----- 160 (195)
T ss_dssp SEEEEEEETTCH------------HHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT-----
T ss_pred CEEEEEEECCCH------------HHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh-----
Confidence 888888888631 2222223333222221 136899999999999653221 22222222111
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++.+||+++ .+++++++.+.+.+.
T Consensus 161 ------------~-~~~~e~Sa~~~-~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 161 ------------S-CKHIETSAALH-HNTRELFEGAVRQIR 187 (195)
T ss_dssp ------------T-CEEEEEBTTTT-BSHHHHHHHHHHHHH
T ss_pred ------------C-CEEEEEcCCCC-CCHHHHHHHHHHHHH
Confidence 1 25889999999 999999999887654
No 264
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.37 E-value=1.4e-12 Score=121.22 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=98.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|.+|+|||||++.+.+.... ...| |.......+.+.+ ..+.++|+||... +.......+..++.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~i~Dt~G~~~-------~~~~~~~~~~~~d~ 70 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-ISFTVWDVGGQDK-------IRPLWRHYFQNTQG 70 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSS-CEEEEEECCCCGG-------GHHHHHHHTTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECC-EEEEEEEcCCChh-------hHHHHHHHhccCCE
Confidence 6899999999999999999875432 2222 4445556666655 5799999999743 22223334566788
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|++.. ..+.. ....+..+.. .....|.++|+||+|+..... .+.+.+..... ...
T Consensus 71 ~i~v~d~~~~---------~s~~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~--- 132 (164)
T 1r8s_A 71 LIFVVDSNDR---------ERVNE---AREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLH--SLR--- 132 (164)
T ss_dssp EEEEEETTCG---------GGHHH---HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGG--GCS---
T ss_pred EEEEEECCCH---------HHHHH---HHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcc--ccc---
Confidence 8888888631 12222 2233333322 234789999999999975422 22233222210 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
... .+++.+||+++ .|++++++.+.+.+.
T Consensus 133 -------~~~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 133 -------HRN-WYIQATCATSG-DGLYEGLDWLSNQLR 161 (164)
T ss_dssp -------SCC-EEEEECBTTTT-BTHHHHHHHHHHHC-
T ss_pred -------Ccc-EEEEEcccCCC-cCHHHHHHHHHHHHh
Confidence 001 25889999999 999999999876653
No 265
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=1.3e-12 Score=123.55 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=95.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCC-CccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASY-PFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~-~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|||||||++.|.+.......+ |.++.......+..++. ..+.++|+||...... .....+..+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 84 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-------VTHAYYRDA 84 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGGC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHccCC
Confidence 79999999999999999999876544333 33333333344445432 2588999999643221 122334557
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... .....+.....++..+.. ...|.++|+||+|+...... .+...+.....
T Consensus 85 d~ii~v~d~~~~---------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 146 (180)
T 2g6b_A 85 HALLLLYDVTNK---------ASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY------- 146 (180)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-------
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHc-------
Confidence 788888888631 112222222222222211 46789999999999753221 12222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++++||+++ .+++++++.+.+.+..
T Consensus 147 ----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 147 ----------G-LPFMETSAKTG-LNVDLAFTAIAKELKR 174 (180)
T ss_dssp ----------T-CCEEECCTTTC-TTHHHHHHHHHHHHHC
T ss_pred ----------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 25899999999 9999999998876643
No 266
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.36 E-value=8.7e-13 Score=126.22 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=98.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
-+|+++|.+|||||||++.|.+........ .|.......+...+ ..+.++|+||..... ......+..++
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 92 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKGN-VTIKLWDIGGQPRFR-------SMWERYCRGVS 92 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEETT-EEEEEEEECCSHHHH-------TTHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeCC-EEEEEEECCCCHhHH-------HHHHHHHccCC
Confidence 479999999999999999999765432222 24444445555554 579999999964321 11233445678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++++|+|+... ..+.. ....+..+.. .....|.++|+||+|+..... .+++.+.+... ...
T Consensus 93 ~ii~v~D~~~~---------~s~~~---~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~--~~~-- 155 (188)
T 1zd9_A 93 AIVYMVDAADQ---------EKIEA---SKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLS--AIQ-- 155 (188)
T ss_dssp EEEEEEETTCG---------GGHHH---HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGG--GCC--
T ss_pred EEEEEEECCCH---------HHHHH---HHHHHHHHHhCcccCCCCEEEEEECCCCccCCC-HHHHHHHhChh--hhc--
Confidence 88889998631 12222 2223333222 135789999999999975422 12222222110 000
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.....++.+||+++ .|++++++.+.+.+.
T Consensus 156 ---------~~~~~~~~~SA~~g-~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 156 ---------DREICCYSISCKEK-DNIDITLQWLIQHSK 184 (188)
T ss_dssp ---------SSCEEEEECCTTTC-TTHHHHHHHHHHTCC
T ss_pred ---------cCCeeEEEEECCCC-CCHHHHHHHHHHHHH
Confidence 01125889999999 999999999876553
No 267
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.36 E-value=1.2e-12 Score=123.82 Aligned_cols=163 Identities=17% Similarity=0.114 Sum_probs=94.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC--ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~--~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.+|+++|.+|||||||++.+.+........|..+.......+.+++. ..+.++|+||...... .....+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 81 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-------LGVAFYRG 81 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-------hhHHHhhc
Confidence 47999999999999999999986544333344445555566665522 3579999999543221 11222345
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHh--HHHHHHHHHhccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQE--IYDGIRDTLHNLKDH 330 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~--~~~~l~~~~~~l~~~ 330 (654)
++.+++|+|+... .....+..+..++..+.. .....|.++|+||+|+..... ..+...+.....
T Consensus 82 ~d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~--- 149 (182)
T 1ky3_A 82 ADCCVLVYDVTNA---------SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL--- 149 (182)
T ss_dssp CCEEEEEEETTCH---------HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT---
T ss_pred CCEEEEEEECCCh---------HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhc---
Confidence 6778888888631 122222222233322221 114679999999999854321 122222222210
Q ss_pred cccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
....++++||+++ .|++++++.+.+.+.
T Consensus 150 --------------~~~~~~~~Sa~~~-~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 150 --------------GDIPLFLTSAKNA-INVDTAFEEIARSAL 177 (182)
T ss_dssp --------------TSCCEEEEBTTTT-BSHHHHHHHHHHHHH
T ss_pred --------------CCCeEEEEecCCC-CCHHHHHHHHHHHHH
Confidence 0126899999999 999999999987654
No 268
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.36 E-value=3.2e-13 Score=125.93 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=85.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
-+|+++|.+|||||||++.+++.... ..+.+.++.. ..+.+++. ..+.++|+||...... .....+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRW-------LPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchh-------hhhhhhhh
Confidence 37999999999999999999986543 2234444442 22333331 2578999999654221 11223455
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++.+++|+|+++. ..+..+.....++..+. .....|.++|+||+|+.............+...
T Consensus 73 ~~~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------- 135 (166)
T 3q72_A 73 GDAYVIVYSVTDK---------GSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVSVDEGRACAVV------- 135 (166)
T ss_dssp CCEEEEEEETTCH---------HHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHH-------
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccCHHHHHHHHHH-------
Confidence 6777888888631 12233332323322221 124689999999999875432221111111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.+ .+++++||+++ .|++++++.+.+.+..
T Consensus 136 ---------~~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 136 ---------FD-CKFIETSAALH-HNVQALFEGVVRQIRL 164 (166)
T ss_dssp ---------TT-CEEEECBGGGT-BSHHHHHHHHHHHHHH
T ss_pred ---------hC-CcEEEeccCCC-CCHHHHHHHHHHHHHh
Confidence 01 26899999999 9999999999876643
No 269
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.36 E-value=1.4e-12 Score=121.64 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=93.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||+++|++........+..+.......+.+++ ...+.++|+||..... ......+..++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d 80 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRGAQ 80 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccCCC
Confidence 689999999999999999997543322222222222223344433 2368999999964321 12334455678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|++.. ..+......+..+... ....|.++|+||+|+...... .++..+.....
T Consensus 81 ~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 141 (170)
T 1r2q_A 81 AAIVVYDITNE------------ESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN------- 141 (170)
T ss_dssp EEEEEEETTCH------------HHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-------
T ss_pred EEEEEEECCCH------------HHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc-------
Confidence 88888888631 1222222222222221 235678888899998653221 12222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++++||+++ .+++++++.|.+.+
T Consensus 142 ----------~-~~~~~~Sa~~g-~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 142 ----------S-LLFMETSAKTS-MNVNEIFMAIAKKL 167 (170)
T ss_dssp ----------T-CEEEECCTTTC-TTHHHHHHHHHHTS
T ss_pred ----------C-CeEEEEeCCCC-CCHHHHHHHHHHHH
Confidence 1 26889999999 99999999987644
No 270
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.36 E-value=1.3e-12 Score=124.86 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=96.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.|++.. ....++.|+.......+.+++. ..+.++|+||...... .....+..++
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d 94 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTGE 94 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC-CccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHhhCcCC
Confidence 79999999999999999999754 3345566655555555555542 2488999999643221 1122334466
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++|+|+... .....+..+..++..+.. ....|.++|+||+|+.......+...+.....
T Consensus 95 ~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------- 155 (190)
T 3con_A 95 GFLCVFAINNS---------KSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY--------- 155 (190)
T ss_dssp EEEEEEETTCH---------HHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH---------
T ss_pred EEEEEEECcCH---------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHc---------
Confidence 77777777631 122333333333332221 13689999999999875322223333332211
Q ss_pred ccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 337 EFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 337 ~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++.+||+++ .+++++++.+.+.+..
T Consensus 156 --------~-~~~~~~Sa~~~-~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 156 --------G-IPFIETSAKTR-QGVEDAFYTLVREIRQ 183 (190)
T ss_dssp --------T-CCEEECCTTTC-TTHHHHHHHHHHHHHH
T ss_pred --------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 15899999999 9999999999876654
No 271
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=125.98 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=96.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+|+|.+|||||||++.|.+........+..+.......+.+++. ..+.++|+||.... .......+..+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF-------RTITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG-------HHHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHHhhC
Confidence 47999999999999999999876532222222223333445555541 36899999996432 22233445667
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh-HHHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... ..+..+..+..++..+. ....|.++|+||+|+..... ..++..+.....
T Consensus 103 d~iilv~D~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~------- 164 (201)
T 2hup_A 103 NGAILAYDITKR---------SSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY------- 164 (201)
T ss_dssp SEEEEEEETTBH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECCccccccccCHHHHHHHHHHc-------
Confidence 888889888631 12222222222222221 14678899999999975322 122233322211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
++..++.+||+++ .+++++++.+.+.+..
T Consensus 165 ----------~~~~~~~~SA~~g-~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 165 ----------DILCAIETSAKDS-SNVEEAFLRVATELIM 193 (201)
T ss_dssp ----------TCSEEEECBTTTT-BSHHHHHHHHHHHHHH
T ss_pred ----------CCCEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1126899999999 9999999998876643
No 272
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.36 E-value=2.3e-12 Score=123.18 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=97.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+|+|.+|||||||++.|++........+..+.......+...+ ...+.++|+||....... ....+..+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI-------TTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-------GGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-------HHHhccCC
Confidence 3799999999999999999998654333333222233333444433 236899999996543221 12234457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|++.. .....+..+..++..+. ....|.++|+||+|+...... .+...+.....
T Consensus 96 d~ii~v~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 157 (189)
T 2gf9_A 96 MGFLLMYDIANQ---------ESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPAEDGRRLADDL------- 157 (189)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCHHHHHHHHHHc-------
Confidence 788888888631 12222222222222221 236799999999998654221 12222222211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++.+||+++ .+++++++.+.+.+.
T Consensus 158 ----------~-~~~~~~Sa~~g-~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 158 ----------G-FEFFEASAKEN-INVKQVFERLVDVIC 184 (189)
T ss_dssp ----------T-CEEEECBTTTT-BSHHHHHHHHHHHHH
T ss_pred ----------C-CeEEEEECCCC-CCHHHHHHHHHHHHH
Confidence 1 16899999999 999999999887664
No 273
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.35 E-value=2.8e-12 Score=121.16 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=96.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+++..... +..|+.......+.+++. ..+.+||+||... ...+..++
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~d 74 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWAD 74 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhCC
Confidence 69999999999999999999865432 433433333444555442 2478899999643 13345678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccc--h-HhHHHHHHHHHhccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEG--A-QEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~--~-~~~~~~l~~~~~~l~~~i~ 332 (654)
.+++|+|++.. ..+..+..+..++..+... ....|.++|.||+|+.. . ....+...++....
T Consensus 75 ~~ilv~D~~~~---------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----- 140 (178)
T 2iwr_A 75 AVIFVFSLEDE---------NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM----- 140 (178)
T ss_dssp EEEEEEETTCH---------HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-----
T ss_pred EEEEEEECcCH---------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-----
Confidence 88999998631 1223333322233333211 13678999999999842 1 11122222222211
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
....++.+||+++ .+++++++.+.+.+...
T Consensus 141 ------------~~~~~~~~Sa~~~-~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 141 ------------KRCSYYETXATYG-LNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp ------------SSEEEEEEBTTTT-BTHHHHHHHHHHHHHHH
T ss_pred ------------cCCeEEEEecccc-CCHHHHHHHHHHHHHHH
Confidence 0126899999999 99999999988766443
No 274
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.35 E-value=4.3e-13 Score=129.72 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=97.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|++|||||||++++++... ..|. .|..+..+.+.+++ ..+.++||||...... +.. ..+..++.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~~~--~~~~-~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~----~~~---~~~~~~d~ 95 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDDRL--GQHV-PTLHPTSEELTIAG-MTFTTFDLGGHIQARR----VWK---NYLPAING 95 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT-EEEEEEEECC----CC----GGG---GGGGGCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CccC-CCCCceeEEEEECC-EEEEEEECCCcHhhHH----HHH---HHHhcCCE
Confidence 699999999999999999987543 2232 35566678888876 5899999999754322 111 22345778
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|+... ..+... ..++..+.. .....|.++|+||+|+... ...+++.+.+.........-.
T Consensus 96 ~i~v~D~~~~---------~s~~~~---~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 96 IVFLVDCADH---------ERLLES---KEELDSLMTDETIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGS 162 (198)
T ss_dssp EEEEEETTCG---------GGHHHH---HHHHHHHHTCGGGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSC
T ss_pred EEEEEECCCH---------HHHHHH---HHHHHHHHhCcccCCCcEEEEEECCCcccc-CCHHHHHHHhCcccccccccc
Confidence 8888888631 122322 233332221 2357899999999999752 223344444332110000000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
..+.. .......++++||+++ +|++++++++.+.
T Consensus 163 ~~~~~-~~~~~~~~~~~SA~~g-~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 163 VSLKE-LNARPLEVFMCSVLKR-QGYGEGFRWMAQY 196 (198)
T ss_dssp CCTTT-CCSCCEEEEECBTTTT-BSHHHHHHHHHTT
T ss_pred ccccc-ccCceEEEEEEECCCC-CCHHHHHHHHHHh
Confidence 00000 0001136899999999 9999999988643
No 275
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2.3e-12 Score=124.07 Aligned_cols=160 Identities=20% Similarity=0.197 Sum_probs=100.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||++.|++... ...|..|+.......+.+++. ..+.++|+||... .......+..+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 99 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRF-IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED--------TIQREGHMRWG 99 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC--------CHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc--------ccchhhhhccC
Confidence 3799999999999999999998643 234444443333334444432 3588999999754 12234456677
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|++.. ..++.+..+..++..+.. ....|.++|+||+|+...... .++..+.....
T Consensus 100 d~iilv~D~~~~---------~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~------- 162 (196)
T 2atv_A 100 EGFVLVYDITDR---------GSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATEL------- 162 (196)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHh-------
Confidence 888999998631 122223223333333221 247899999999999753221 12222222111
Q ss_pred CCccchhhhcccceEEEeecccCcc-chHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNST-DVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~-~i~~L~~~i~~~l~~ 374 (654)
+ ..++++||+++ . +++++++.+.+.+..
T Consensus 163 ----------~-~~~~~~Sa~~g-~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 163 ----------A-CAFYECSACTG-EGNITEIFYELCREVRR 191 (196)
T ss_dssp ----------T-SEEEECCTTTC-TTCHHHHHHHHHHHHHH
T ss_pred ----------C-CeEEEECCCcC-CcCHHHHHHHHHHHHHh
Confidence 1 26899999999 9 999999998876643
No 276
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.35 E-value=8e-13 Score=125.94 Aligned_cols=163 Identities=20% Similarity=0.178 Sum_probs=101.1
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
..+|+++|.+|||||||++.+++.. ...+.. |.......+.+++ ..+.++|+||....... ....+..+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~-------~~~~~~~~ 86 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED--VDTISP-TLGFNIKTLEHRG-FKLNIWDVGGQKSLRSY-------WRNYFEST 86 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC-CSSEEEEEEEETT-EEEEEEEECCSHHHHTT-------GGGGCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCcccc-cCccceEEEEECC-EEEEEEECCCCHhHHHH-------HHHHhcCC
Confidence 3479999999999999999999866 333332 3445556676664 57999999997432211 12233457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++|+|++.. ..+..+.....++... ......|.++|+||+|+..... .+++.+.+... ...
T Consensus 87 d~ii~v~d~~~~---------~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~--- 150 (186)
T 1ksh_A 87 DGLIWVVDSADR---------QRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGALS-CNAIQEALELD--SIR--- 150 (186)
T ss_dssp SEEEEEEETTCG---------GGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGG--GCC---
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHhC-hhcCCCcEEEEEeCccCCCCCC-HHHHHHHhChh--hcc---
Confidence 788888888631 1223222222222111 1135689999999999975432 23333332210 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+ .+++++||+++ .+++++++.+.+.+.+
T Consensus 151 -------~~~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 151 -------SHH-WRIQGCSAVTG-EDLLPGIDWLLDDISS 180 (186)
T ss_dssp -------SSC-EEEEECCTTTC-TTHHHHHHHHHHHHHT
T ss_pred -------CCc-eEEEEeeCCCC-CCHHHHHHHHHHHHHh
Confidence 001 26899999999 9999999998876543
No 277
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.1e-12 Score=125.16 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=99.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|.+|||||||++.+++.... .+ ..|.......+.+++ ..+.++|+||...... + ....+..++
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~----~---~~~~~~~~d 85 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVINN-TRFLMWDIGGQESLRS----S---WNTYYTNTE 85 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--EE-ECCSCSSCEEEEETT-EEEEEEECCC----CG----G---GHHHHTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cC-cCCCccceEEEEECC-EEEEEEECCCCHhHHH----H---HHHHhcCCC
Confidence 37999999999999999999975432 11 124445556677765 5799999999753221 1 223445678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|++.. ..+... ...+..+... ....|.++|+||+|+..... .+++.+.+... ...
T Consensus 86 ~ii~v~d~~~~---------~s~~~~---~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~--~~~-- 148 (187)
T 1zj6_A 86 FVIVVVDSTDR---------ERISVT---REELYKMLAHEDLRKAGLLIFANKQDVKECMT-VAEISQFLKLT--SIK-- 148 (187)
T ss_dssp EEEEEEETTCT---------TTHHHH---HHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGG--GCC--
T ss_pred EEEEEEeCCCH---------HHHHHH---HHHHHHHHhchhhCCCeEEEEEECCCCcCCCC-HHHHHHHhChh--hhc--
Confidence 88999998741 223332 2233333221 35789999999999975322 22333333211 000
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+ ..++.+||+++ .|++++++.+.+.+..
T Consensus 149 --------~~~-~~~~~~Sa~~g-~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 149 --------DHQ-WHIQACCALTG-EGLCQGLEWMMSRLKI 178 (187)
T ss_dssp --------SSC-EEEEECBTTTT-BTHHHHHHHHHHHHCC
T ss_pred --------CCC-cEEEEccCCCC-cCHHHHHHHHHHHHHH
Confidence 001 26899999999 9999999999876543
No 278
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.35 E-value=1.9e-12 Score=125.27 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=98.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+|+|.+|||||||++.|++........+..+.......+..++ ...+.++|+||.... .......+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhhcCC
Confidence 3799999999999999999998654333233222233333444443 236899999996432 22233445567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... ..+..+..+..++..+. ....|.++|+||+|+...... .+...+.....
T Consensus 82 d~ii~v~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 143 (203)
T 1zbd_A 82 MGFILMYDITNE---------ESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL------- 143 (203)
T ss_dssp SEEEEEEETTCH---------HHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcccccCHHHHHHHHHHC-------
Confidence 788888888631 12223332333332221 246899999999998653221 12222222211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+.+.+..
T Consensus 144 ----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 144 ----------G-FEFFEASAKDN-INVKQTFERLVDVICE 171 (203)
T ss_dssp ----------T-CEEEECBTTTT-BSSHHHHHHHHHHHHH
T ss_pred ----------C-CeEEEEECCCC-CCHHHHHHHHHHHHHH
Confidence 1 16899999999 9999999998876644
No 279
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=124.25 Aligned_cols=160 Identities=18% Similarity=0.116 Sum_probs=96.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+|+|.+|||||||++.|++........+..........+.+++ ...+.++|+||...... + ....+..+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA----I---TSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT----T---HHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh----h---hHHHhccC
Confidence 3799999999999999999998654433222222222222333332 23578999999754221 1 23345567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|+... ..+......+..+... ....|.++|+||+|+...... .+....+....
T Consensus 99 d~vi~v~D~~~~------------~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------ 160 (193)
T 2oil_A 99 VGALLVFDLTKH------------QTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN------ 160 (193)
T ss_dssp CEEEEEEETTCH------------HHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT------
T ss_pred CEEEEEEECCCH------------HHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc------
Confidence 788888888631 1222222222222211 136789999999999754221 22222222110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+.+.+..
T Consensus 161 -----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 161 -----------G-LLFLETSALDS-TNVELAFETVLKEIFA 188 (193)
T ss_dssp -----------T-CEEEEECTTTC-TTHHHHHHHHHHHHHH
T ss_pred -----------C-CEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999998876543
No 280
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.35 E-value=1.8e-12 Score=121.06 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=94.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||++.|.+........|..........+.+.+ ...+.++|+||..... ......+..+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYRGS 79 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCcCC
Confidence 3799999999999999999998653222122111122222333332 1358899999974321 1122344556
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... .....+..+..++..+ .....|.++|+||+|+....+. .+.........
T Consensus 80 ~~~i~v~d~~~~---------~s~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~------- 141 (170)
T 1z0j_A 80 AAAIIVYDITKE---------ETFSTLKNWVRELRQH--GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI------- 141 (170)
T ss_dssp SEEEEEEETTCH---------HHHHHHHHHHHHHHHH--SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHh--CCCCCcEEEEEECCccccccccCHHHHHHHHHHc-------
Confidence 788888888631 1222332222333222 1245678888999999754322 12222222111
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++++||+++ .+++++++.+.+.+
T Consensus 142 ----------~-~~~~~~Sa~~~-~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 142 ----------H-AIFVETSAKNA-ININELFIEISRRI 167 (170)
T ss_dssp ----------T-CEEEECBTTTT-BSHHHHHHHHHHHC
T ss_pred ----------C-CEEEEEeCCCC-cCHHHHHHHHHHHH
Confidence 1 26899999999 99999999987654
No 281
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.35 E-value=1.4e-12 Score=151.91 Aligned_cols=261 Identities=16% Similarity=0.140 Sum_probs=134.1
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccch
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG 245 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~ 245 (654)
..+++|++..|+.++|+|+||||||||+++|+|-. +...+... ....+.+ .. +.+.+..... .
T Consensus 451 L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~--i~g~~~~~-~~~~~~v--~q-------~~~~~~~~lt----v- 513 (986)
T 2iw3_A 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ--VDGFPTQE-ECRTVYV--EH-------DIDGTHSDTS----V- 513 (986)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC--STTCCCTT-TSCEEET--TC-------CCCCCCTTSB----H-
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--cCCCcccc-ceeEEEE--cc-------cccccccCCc----H-
Confidence 46899999999999999999999999999999532 22221100 0011111 10 0001110000 0
Q ss_pred HHHHH-----HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhH
Q psy1086 246 HQFLR-----HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEI 316 (654)
Q Consensus 246 ~~~l~-----~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~ 316 (654)
.+++. ..++...++..+++.. +..+.++..+|++++++..+++.+..+|.++++ |.+|.....+.
T Consensus 514 ~e~l~~~~~~~~~~v~~~L~~lgL~~------~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 514 LDFVFESGVGTKEAIKDKLIEFGFTD------EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHTTCCH------HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHcCCCh------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 00000 0122222232233210 112456678999999999999999999999999 89998877776
Q ss_pred HHHHHHHHhccccccccCCCccchhhhcccceEEEeeccc----CccchHHHHHHHHHHHHHhHhHH-HhhhhhhhhhhH
Q psy1086 317 YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKT----NSTDVNDAKLKIRSILDLLAEEE-QEMVDRELELDS 391 (654)
Q Consensus 317 ~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~----~~~~i~~L~~~i~~~l~~~~~~~-~~~~~~~~~~~~ 391 (654)
.+.+.+ .. ..+....++...-.. -...++.+.... . ....++... .+...... .........++.
T Consensus 588 ~~~L~~--~g--~tvIivSHdl~~l~~-~adrii~L~~G~iv~~~-G~~~e~~~~----~~~~~~~~~l~~~~~~~~~p~ 657 (986)
T 2iw3_A 588 VNYLNT--CG--ITSITISHDSVFLDN-VCEYIINYEGLKLRKYK-GNFTEFVKK----CPAAKAYEELSNTDLEFKFPE 657 (986)
T ss_dssp HHHHHH--SC--SEEEEECSCHHHHHH-HCSEEEEEETTEEEEEE-SCHHHHHHH----CGGGGGSSSTTTCCCCCCCCC
T ss_pred HHHHHh--CC--CEEEEEECCHHHHHH-hCCEEEEEECCeeecCC-CCHHHHHhh----hHHHHHHHhhhhhhhhccccc
Confidence 666654 11 111111111110000 001233332100 0 122222211 00000000 000000000000
Q ss_pred HH-----HhhCCCccccCCCcccCCC----cceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccce
Q psy1086 392 II-----IAHGGAGGNAQNGWLGRKG----EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN 462 (654)
Q Consensus 392 ~~-----~~~g~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~ 462 (654)
.. ...+...+...+.++.|++ ...+++|++..|..++++|+||+|||||++.+.|. ..+.
T Consensus 658 ~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl-----------l~P~ 726 (986)
T 2iw3_A 658 PGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-----------LLPT 726 (986)
T ss_dssp CCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS-----------SCCS
T ss_pred cccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCC
Confidence 00 0011122334445555532 35699999999999999999999999999999996 3356
Q ss_pred eEEEEeCC
Q psy1086 463 VGVITFDD 470 (654)
Q Consensus 463 ~~~v~~~~ 470 (654)
.+.+.+++
T Consensus 727 sG~I~~~~ 734 (986)
T 2iw3_A 727 SGEVYTHE 734 (986)
T ss_dssp EEEEEECT
T ss_pred ceEEEEcC
Confidence 67777764
No 282
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.35 E-value=1e-12 Score=124.58 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=99.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|||||||++.+.+.. ....++.|+.......+.+++. ..+.++|+||....... ... .+..+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----~~~---~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF----PQT---YSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----CGG---GTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH----HHH---HHhcC
Confidence 379999999999999999999644 4566666666555556666542 24689999997654221 111 22346
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... ..+..+.....++..+.. ....|.++|+||+|+...... .++..+.....
T Consensus 79 ~~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------- 141 (181)
T 3t5g_A 79 NGYILVYSVTSI---------KSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESW------- 141 (181)
T ss_dssp SEEEEEEETTCH---------HHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHHHHHHHHHh-------
Confidence 777888888631 222333333333322221 236799999999998643222 22222222211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++++||+++ .+++++++.+.+.+..
T Consensus 142 ----------~-~~~~~~Sa~~~-~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 142 ----------N-AAFLESSAKEN-QTAVDVFRRIILEAEK 169 (181)
T ss_dssp ----------T-CEEEECCTTSH-HHHHHHHHHHHHHHHT
T ss_pred ----------C-CcEEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 1 25899999999 9999999998876644
No 283
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.34 E-value=5.1e-13 Score=130.80 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=96.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-----------CccEEEEecCcccccccccccch
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-----------FRKMSVADLPGLIEGAHRNLGMG 245 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-----------~~~~~i~D~PGl~~~~~~~~~l~ 245 (654)
-+|+|+|.+|||||||+++|++........+..+.......+.+++ ...+.++|+||... +.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-------FR 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------HH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-------HH
Confidence 3799999999999999999998644222122122222233344443 23689999999532 22
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhh--cCcceeEeecccCccchHhH-HHHHHH
Q psy1086 246 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL--LEKPIILLVNKMDVEGAQEI-YDGIRD 322 (654)
Q Consensus 246 ~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l--~~~P~ilvlNK~D~~~~~~~-~~~l~~ 322 (654)
......+..++++++|+|+... ..+......+..+.... ...|.++|+||+|+...... .+...+
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~------------~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~ 166 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQ------------QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE 166 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCH------------HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred hHHHHHhcCCCEEEEEEECcCH------------HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence 2234445667788888888631 22222222222222111 46789999999999753221 222222
Q ss_pred HHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 323 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 323 ~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+.... + ..++.+||+++ .+++++++.+.+.+..
T Consensus 167 ~~~~~-----------------~-~~~~~~Sa~~g-~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 167 LADKY-----------------G-IPYFETSAATG-QNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHHT-----------------T-CCEEEEBTTTT-BTHHHHHHHHHHHHHH
T ss_pred HHHHC-----------------C-CcEEEEECCCC-CCHHHHHHHHHHHHHH
Confidence 22211 1 25899999999 9999999999876644
No 284
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=122.46 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=89.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|||||||++.|++...... ++.+........+.+++. ..+.++|+||..... ...+ .......+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--~~~~---~~~~~~~~ 78 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--KSWS---QESCLQGG 78 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------CHH---HHHTTTSC
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccc--hhhh---HHhhcccC
Confidence 3799999999999999999998654322 222222333445555542 257899999964310 0001 11112335
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+++. ..+..+..+..++..+. .....|.++|+||+|+...... .++...+....
T Consensus 79 ~~~i~v~d~~~~---------~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~------- 141 (175)
T 2nzj_A 79 SAYVIVYSIADR---------GSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSVEEGRACAVVF------- 141 (175)
T ss_dssp SEEEEEEETTCH---------HHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH-------
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCHHHHHHHHHHc-------
Confidence 666777777531 12223322222222211 1236899999999999754221 12222211110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++++||+++ .|++++++.+.+.+..
T Consensus 142 ----------~-~~~~~~Sa~~g-~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 142 ----------D-CKFIETSATLQ-HNVAELFEGVVRQLRL 169 (175)
T ss_dssp ----------T-SEEEECBTTTT-BSHHHHHHHHHHHHHH
T ss_pred ----------C-CeEEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999999876643
No 285
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=5.9e-13 Score=127.69 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=98.9
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.-+|+|+|.+|||||||++.|++........+..+.......+..+. ...+.++|+||... +.......+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 95 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYYRG 95 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHcc
Confidence 34799999999999999999998653322222223333334444443 23589999999532 22233444556
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
++.+++|+|+... ..++.+..+..++..+. ....|.++|+||+|+...... .+.........
T Consensus 96 ~d~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------ 158 (191)
T 3dz8_A 96 AMGFILMYDITNE---------ESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL------ 158 (191)
T ss_dssp CCEEEEEEETTCH---------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------
T ss_pred CCEEEEEEECcCH---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHc------
Confidence 7788888888631 22233333333332221 246789999999998654222 12222221111
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+.+.+..
T Consensus 159 -----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 159 -----------G-FDFFEASAKEN-ISVRQAFERLVDAICD 186 (191)
T ss_dssp -----------T-CEEEECBTTTT-BSHHHHHHHHHHHHHH
T ss_pred -----------C-CeEEEEECCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999998876643
No 286
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.34 E-value=9.9e-13 Score=125.13 Aligned_cols=159 Identities=23% Similarity=0.236 Sum_probs=97.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|.+|||||||++.+++... ..+. .|.......+.+++ ..+.++|+||... +...+...+..++
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~--~~~~-~t~g~~~~~~~~~~-~~l~i~Dt~G~~~-------~~~~~~~~~~~~~ 85 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI--SHIT-PTQGFNIKSVQSQG-FKLNVWDIGGQRK-------IRPYWRSYFENTD 85 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC--EEEE-EETTEEEEEEEETT-EEEEEEECSSCGG-------GHHHHHHHHTTCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--Cccc-CcCCeEEEEEEECC-EEEEEEECCCCHH-------HHHHHHHHhCCCC
Confidence 3799999999999999999998532 1111 12222333566654 5789999999643 2223344556678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|+++. ..+.. ...++..+.. .....|.++|+||+|+..... .+++.+.+... ...
T Consensus 86 ~~i~v~d~~~~---------~s~~~---~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~--~~~-- 148 (181)
T 1fzq_A 86 ILIYVIDSADR---------KRFEE---TGQELTELLEEEKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLH--TIR-- 148 (181)
T ss_dssp EEEEEEETTCG---------GGHHH---HHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGG--GCC--
T ss_pred EEEEEEECcCH---------HHHHH---HHHHHHHHHhChhhcCCCEEEEEECcCcccCCC-HHHHHHHhCch--hcc--
Confidence 88888888631 12222 2223322221 235689999999999975432 22333332210 000
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
... ..++++||+++ .|++++++.+.+.+.
T Consensus 149 --------~~~-~~~~~~Sa~~g-~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 149 --------DRV-WQIQSCSALTG-EGVQDGMNWVCKNVN 177 (181)
T ss_dssp --------SSC-EEEEECCTTTC-TTHHHHHHHHHHTC-
T ss_pred --------CCc-eEEEEccCCCC-CCHHHHHHHHHHHHH
Confidence 001 26899999999 999999999876553
No 287
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=1.2e-12 Score=125.59 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=95.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCC--CCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKI--ASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i--~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|+++|.+|+|||||++.|++..... .+.+.++ .....+.++. ...+.++|+||...... .....+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 95 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS--FMTKTVPCGNELHKFLIWDTAGQERFHS-------LAPMYYRG 95 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEE--EEEEEEECSSSEEEEEEEEECCSGGGGG-------GTHHHHTT
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCccee--EEEEEEEeCCEEEEEEEEcCCCchhhHh-------hhHHhhcc
Confidence 79999999999999999999865321 2222222 2222333332 23689999999643221 12334456
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh-HHHHHHHHHhcccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~ 333 (654)
++.+++|+|+... .....+..+..++..+. ....|.++|+||+|+..... ..++..+.....
T Consensus 96 ~d~iilV~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~------ 158 (192)
T 2fg5_A 96 SAAAVIVYDITKQ---------DSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSDIREVPLKDAKEYAESI------ 158 (192)
T ss_dssp CSEEEEEEETTCT---------HHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT------
T ss_pred CCEEEEEEeCCCH---------HHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHc------
Confidence 7888889888631 12233332323332221 13678999999999965322 123333333221
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ ..++++||+++ .+++++++.+.+.+.
T Consensus 159 -----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 159 -----------G-AIVVETSAKNA-INIEELFQGISRQIP 185 (192)
T ss_dssp -----------T-CEEEECBTTTT-BSHHHHHHHHHHTCC
T ss_pred -----------C-CEEEEEeCCCC-cCHHHHHHHHHHHHH
Confidence 1 26899999999 999999999876553
No 288
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.34 E-value=3.3e-12 Score=123.36 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=93.5
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
..+|+|+|.+|||||||++.|++........+..........+.+++. ..+.++|+||... +.......+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ 100 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER-------FRSIAKSYFRK 100 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTT-------CHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc-------hhhhHHHHHhh
Confidence 458999999999999999999986533222222222333344555442 2588999999543 23334555677
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh------H-HHHHHHHHhcc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE------I-YDGIRDTLHNL 327 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~------~-~~~l~~~~~~l 327 (654)
++.+++|+|+... .....+..+..++..+. ....|.++|+||+|+..... . .+...+....
T Consensus 101 ~d~iilv~d~~~~---------~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~- 168 (199)
T 2p5s_A 101 ADGVLLLYDVTCE---------KSFLNIREWVDMIEDAA--HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT- 168 (199)
T ss_dssp CSEEEEEEETTCH---------HHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH-
T ss_pred CCEEEEEEECCCh---------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccccccccccCHHHHHHHHHH-
Confidence 8889999998631 12222222222222221 13679999999999863211 0 1111111111
Q ss_pred ccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 328 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ ..++++||+++ .|++++++.+.+.+
T Consensus 169 ----------------~~-~~~~~~SA~~g-~gv~el~~~l~~~i 195 (199)
T 2p5s_A 169 ----------------YG-ALFCETSAKDG-SNIVEAVLHLAREV 195 (199)
T ss_dssp ----------------HT-CEEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred ----------------cC-CeEEEeeCCCC-CCHHHHHHHHHHHH
Confidence 01 26889999999 99999999987655
No 289
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.34 E-value=2e-12 Score=121.05 Aligned_cols=159 Identities=23% Similarity=0.228 Sum_probs=99.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|.+|||||||++.+.+.... .+. .|.......+.+++ ..+.++|+||....... +...+..++
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~-~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~-------~~~~~~~~d 76 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV--TTI-PTIGFNVETVTYKN-LKFQVWDLGGLTSIRPY-------WRCYYSNTD 76 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--CCC-CCSSEEEEEEEETT-EEEEEEEECCCGGGGGG-------GGGGCTTCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CcC-CcCccceEEEEECC-EEEEEEECCCChhhhHH-------HHHHhccCC
Confidence 47999999999999999999875431 222 24445556677764 57999999997543221 122334678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|+... ..+.. ...++..+.. .....|.++|+||+|+..... .+.+.+.+... ...
T Consensus 77 ~ii~v~d~~~~---------~s~~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~-- 139 (171)
T 1upt_A 77 AVIYVVDSCDR---------DRIGI---SKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLP--ALK-- 139 (171)
T ss_dssp EEEEEEETTCC---------TTHHH---HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGG--GCT--
T ss_pred EEEEEEECCCH---------HHHHH---HHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-HHHHHHHhCch--hcc--
Confidence 88899998632 12222 2233333322 125789999999999976422 12222222110 000
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
..+ ..++++||+++ .+++++++.+.+.+.
T Consensus 140 --------~~~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 140 --------DRK-WQIFKTSATKG-TGLDEAMEWLVETLK 168 (171)
T ss_dssp --------TSC-EEEEECCTTTC-TTHHHHHHHHHHHHH
T ss_pred --------CCc-eEEEECcCCCC-cCHHHHHHHHHHHHh
Confidence 011 26899999999 999999999887654
No 290
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.33 E-value=3.1e-12 Score=122.64 Aligned_cols=165 Identities=18% Similarity=0.139 Sum_probs=99.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCc----cccccceEEEEe-------CC-CccEEEEecCcccccccccccch
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPF----TTIKPNVGVITF-------DD-FRKMSVADLPGLIEGAHRNLGMG 245 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~----tTl~p~~G~v~~-------~~-~~~~~i~D~PGl~~~~~~~~~l~ 245 (654)
+|+|+|.+|||||||++.+.+..+....... +...|..|.-.. ++ ...+.++|+||.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------- 88 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN------- 88 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS-------
T ss_pred EEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH-------
Confidence 7999999999999999999986543211100 112233432211 11 1257899999964322
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHh
Q psy1086 246 HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 246 ~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~ 325 (654)
......+..++.+++|+|++.. ........+..+...+..+.......|.++|+||+|+.... ..++..+...
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~------~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~ 161 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPN------RLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL-PVEMVRAVVD 161 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGG------GHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC-CHHHHHHHHC
T ss_pred HHHHHHHhcCCEEEEEEECCcc------hhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc-CHHHHHHHHH
Confidence 2233345567888888888621 00012233334444444333334678999999999987542 2333333333
Q ss_pred ccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 326 NLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 326 ~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.. ++..++.+||+++ .|++++++.+.+.+..
T Consensus 162 ~~-----------------~~~~~~~~Sa~~~-~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 162 PE-----------------GKFPVLEAVATEG-KGVFETLKEVSRLVLA 192 (198)
T ss_dssp TT-----------------CCSCEEECBGGGT-BTHHHHHHHHHHHHHH
T ss_pred hc-----------------CCceEEEEecCCC-cCHHHHHHHHHHHHHH
Confidence 21 1125899999999 9999999998876644
No 291
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.33 E-value=1.7e-13 Score=152.35 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=43.9
Q ss_pred CCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHHHh
Q psy1086 273 HPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 273 ~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~~ 325 (654)
+..+.+..++|++++++..++.+|..+|.++++ |.+|.....+..+.+.+..+
T Consensus 150 ~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~ 206 (538)
T 1yqt_A 150 NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206 (538)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 344667889999999999999999999999999 89998877777666665543
No 292
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.33 E-value=5.4e-13 Score=126.60 Aligned_cols=159 Identities=22% Similarity=0.261 Sum_probs=96.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|++|||||||++.+++... ..+. .|.......+.+++ ..+.++|+||....... +...+..++.
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~~--~~~~-~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ 88 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGEV--VTTK-PTIGFNVETLSYKN-LKLNVWDLGGQTSIRPY-------WRCYYADTAA 88 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSEE--EEEC-SSTTCCEEEEEETT-EEEEEEEEC----CCTT-------GGGTTTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc--CccC-CcCccceEEEEECC-EEEEEEECCCCHhHHHH-------HHHHhccCCE
Confidence 799999999999999999986433 1111 23334456666665 57999999997543221 1223345778
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|++.. ..+..+ ...+..+... ....|.++|+||+|+..... .+++.+.+.... ..
T Consensus 89 ii~v~d~~~~---------~s~~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~-----~~ 150 (183)
T 1moz_A 89 VIFVVDSTDK---------DRMSTA---SKELHLMLQEEELQDAALLVFANKQDQPGALS-ASEVSKELNLVE-----LK 150 (183)
T ss_dssp EEEEEETTCT---------TTHHHH---HHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTT-----CC
T ss_pred EEEEEECCCH---------HHHHHH---HHHHHHHHcChhhCCCeEEEEEECCCCCCCCC-HHHHHHHhCccc-----cc
Confidence 8888888631 222332 2333333221 35789999999999865321 223333322100 00
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
. ....++++||+++ .|++++++.+.+.+..
T Consensus 151 -------~-~~~~~~~~Sa~~~-~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 151 -------D-RSWSIVASSAIKG-EGITEGLDWLIDVIKE 180 (183)
T ss_dssp -------S-SCEEEEEEBGGGT-BTHHHHHHHHHHHHHH
T ss_pred -------C-CceEEEEccCCCC-cCHHHHHHHHHHHHHh
Confidence 0 0126899999999 9999999999876643
No 293
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=127.15 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=94.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||++.|.+........+..+.......+.+++. ..+.++|+||...... + ....+..+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~---~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS----V---TRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC----C---CHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH----H---HHHHhccC
Confidence 47999999999999999999986655444555555555556665542 3689999999643211 1 22334567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... .....+.....++..+. -...|.++|+||+|+...... ..+..+.....
T Consensus 99 d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~------- 160 (200)
T 2o52_A 99 AGALLVYDITSR---------ETYNSLAAWLTDARTLA--SPNIVVILCGNKKDLDPEREVTFLEASRFAQEN------- 160 (200)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHHT--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCcccccccCHHHHHHHHHHc-------
Confidence 888889888631 11222222222222211 136789999999998643221 12222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .|++++++.+.+.+..
T Consensus 161 ----------~-~~~~~~SA~~g-~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 161 ----------E-LMFLETSALTG-ENVEEAFLKCARTILN 188 (200)
T ss_dssp ----------T-CEEEEECTTTC-TTHHHHHHHHHHHHHH
T ss_pred ----------C-CEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999998876543
No 294
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.32 E-value=5.8e-13 Score=128.90 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=97.0
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.-+|+|+|.+|||||||+++|++.... ..++.|+.......+.+++ ...+.++|+||........ ...+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~ 95 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP-------YSFIIG 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC-------GGGTTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH-------HHHHhc
Confidence 347999999999999999999986544 4454444443333443332 2357899999965433221 122344
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-HHHHHHHhcccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHK 333 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~ 333 (654)
++.+++|+|+... ..+..+..+..++..+. .....|.++|+||+|+....... ....+.....
T Consensus 96 ~d~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~------ 159 (201)
T 3oes_A 96 VHGYVLVYSVTSL---------HSFQVIESLYQKLHEGH-GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW------ 159 (201)
T ss_dssp CCEEEEEEETTCH---------HHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH------
T ss_pred CCEEEEEEeCCCH---------HHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCccccccCHHHHHHHHHHh------
Confidence 6778888888631 12222222222222211 12367999999999987543221 1112221110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
+ ..++.+||+++ .+++++++.+.+.+...
T Consensus 160 -----------~-~~~~~~Sa~~~-~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 160 -----------G-ATFMESSAREN-QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp -----------T-CEEEECCTTCH-HHHHHHHHHHHHHHHHC
T ss_pred -----------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHhh
Confidence 1 26899999999 99999999998776544
No 295
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.32 E-value=1.7e-13 Score=149.21 Aligned_cols=160 Identities=21% Similarity=0.289 Sum_probs=100.5
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccch-HHHHHHH
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMG-HQFLRHV 252 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~-~~~l~~i 252 (654)
.+-+|+|+|+||||||||+|+|++... .+.++|+||.+.....+.+++ ..+.++||||+.+.......++ ......+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-EEEEECC--------------------CCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 344699999999999999999998744 467889999998888888876 5899999999865332211111 1223334
Q ss_pred HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccc
Q psy1086 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 253 ~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~ 332 (654)
..+|++++|+|.+.. . .. .. .++ ...+..+|.++|+||+|+....... ...
T Consensus 302 ~~aD~vl~VvD~s~~-------~-~~-~~-----~~i---~~~l~~~piivV~NK~Dl~~~~~~~--------~~~---- 352 (462)
T 3geh_A 302 NTADLVLLTIDAATG-------W-TT-GD-----QEI---YEQVKHRPLILVMNKIDLVEKQLIT--------SLE---- 352 (462)
T ss_dssp CSCSEEEEEEETTTC-------S-CH-HH-----HHH---HHHHTTSCEEEEEECTTSSCGGGST--------TCC----
T ss_pred hcCCEEEEEeccCCC-------C-CH-HH-----HHH---HHhccCCcEEEEEECCCCCcchhhH--------HHH----
Confidence 557888999998631 0 11 11 111 1223457999999999997653311 000
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.+. ...+++.+||+++ .|++++++.+.+.+..
T Consensus 353 ~~~---------~~~~~i~iSAktg-~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 353 YPE---------NITQIVHTAAAQK-QGIDSLETAILEIVQT 384 (462)
T ss_dssp CCT---------TCCCEEEEBTTTT-BSHHHHHHHHHHHHTT
T ss_pred Hhc---------cCCcEEEEECCCC-CCHHHHHHHHHHHHhc
Confidence 010 1136899999999 9999999999887643
No 296
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.32 E-value=7.1e-13 Score=125.96 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=96.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|.+|+|||||++.|.+... ..+ ..|.......+.+++ ..+.++|+||....... +...+..+|
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~--~~~-~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~-------~~~~~~~~d 90 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEV--VHT-SPTIGSNVEEIVINN-TRFLMWDIGGQESLRSS-------WNTYYTNTE 90 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSC--EEE-ECCSSSSCEEEEETT-EEEEEEEESSSGGGTCG-------GGGGGTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--Ccc-CCcCceeeEEEEECC-EEEEEEECCCCHhHHHH-------HHHHhccCC
Confidence 3799999999999999999998644 111 123333445666655 57999999997543221 122345678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh--hcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN--LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~--l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|++.. ..+..+ ...+..+... ....|.++|+||+|+..... .+++.+.+... ...
T Consensus 91 ~ii~v~D~~~~---------~s~~~~---~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~--~~~-- 153 (181)
T 2h17_A 91 FVIVVVDSTDR---------ERISVT---REELYKMLAHEDLRKAGLLIFANKQDVKECMT-VAEISQFLKLT--SIK-- 153 (181)
T ss_dssp EEEEEEETTCT---------TTHHHH---HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGG--GCC--
T ss_pred EEEEEEECCCH---------HHHHHH---HHHHHHHHhChhhCCCeEEEEEECCCcccCCC-HHHHHHHhCcc--ccc--
Confidence 88999998731 222322 2222222221 35789999999999975321 22333332210 000
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
..+ ..++.+||+++ .|++++++.+.+
T Consensus 154 --------~~~-~~~~~~Sa~~g-~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 --------DHQ-WHIQACCALTG-EGLCQGLEWMMS 179 (181)
T ss_dssp --------SSC-EEEEECBTTTT-BTHHHHHHHHHT
T ss_pred --------CCc-eEEEEccCCCC-cCHHHHHHHHHh
Confidence 001 26899999999 999999988764
No 297
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.31 E-value=1.2e-11 Score=117.76 Aligned_cols=169 Identities=21% Similarity=0.218 Sum_probs=95.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccc----cchHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNL----GMGHQFLRHV 252 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~----~l~~~~l~~i 252 (654)
.+|+++|.+|||||||++.+++........|.+|..+... .+. .+.++|+||+........ .+.......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC---CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999877666777777665443 333 699999999643211100 0111111122
Q ss_pred HH-HHHHHHhhcccCcccCCCCCccChHHHH-HHHH--------HHHHHHhHhhcCcceeEeecccCccchH-hHHHHHH
Q psy1086 253 ER-TKLIAMIVDVNGFQLGLKHPKRSCVETV-LLLN--------KELELYKMNLLEKPIILLVNKMDVEGAQ-EIYDGIR 321 (654)
Q Consensus 253 ~~-~~~il~vvd~~~~~l~~~~~~~~~~~~l-~~~~--------~el~~~~~~l~~~P~ilvlNK~D~~~~~-~~~~~l~ 321 (654)
.. ++.+..++++.+. .....+ .... .++..+.. -...|.++|+||+|+.... +..+.+.
T Consensus 77 ~~~~~~~~~v~~v~d~---------~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~ 146 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDG---------KAAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIKNVQEVINFLA 146 (190)
T ss_dssp HHHGGGCCEEEEEEET---------THHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred HhhhccCCEEEEEEcc---------hhhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccCcHHHHHHHHH
Confidence 22 3333333333311 111111 1111 11111111 1468999999999997653 2223333
Q ss_pred HHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 322 DTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 322 ~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
+.+.. .+ .. + ...++++||+++ .|++++++.+.+.+...
T Consensus 147 ~~~~~------~~----~~--~--~~~~~~~Sa~~~-~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 147 EKFEV------PL----SE--I--DKVFIPISAKFG-DNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHTC------CG----GG--H--HHHEEECCTTTC-TTHHHHHHHHHHHHHHC
T ss_pred HHhhh------hh----hc--c--CCcEEEEecCCC-CCHHHHHHHHHHhcchh
Confidence 22211 00 00 0 025799999999 99999999998776543
No 298
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.31 E-value=4.8e-13 Score=143.82 Aligned_cols=160 Identities=22% Similarity=0.271 Sum_probs=106.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|+|||||+++|++... .+.+++++|..+....+.+.+...+.++||||+.++..............+..+
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a 114 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence 3699999999999999999998765 356889999999999999887557999999999876554444445566667778
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
|.+++|+|+. . . .....+..++.. ...|.++|+||+|+...... ...+.+.. . +
T Consensus 115 D~vllVvD~~-~---------~--~~~~~~l~~l~~-----~~~piIvV~NK~Dl~~~~~~--~~~~~l~~---~---~- 168 (423)
T 3qq5_A 115 DCGILVTDSA-P---------T--PYEDDVVNLFKE-----MEIPFVVVVNKIDVLGEKAE--ELKGLYES---R---Y- 168 (423)
T ss_dssp SEEEEECSSS-C---------C--HHHHHHHHHHHH-----TTCCEEEECCCCTTTTCCCT--HHHHHSSC---C---T-
T ss_pred CEEEEEEeCC-C---------h--HHHHHHHHHHHh-----cCCCEEEEEeCcCCCCccHH--HHHHHHHH---H---c-
Confidence 8889999883 1 1 111112222221 37899999999999765432 12222211 0 0
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+ .+++++||+++ .+++++++.+.+.+.
T Consensus 169 ---------g-~~v~~vSAktg-~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 169 ---------E-AKVLLVSALQK-KGFDDIGKTISEILP 195 (423)
T ss_dssp ---------T-CCCCCCSSCCT-TSTTTHHHHHHHHSC
T ss_pred ---------C-CCEEEEECCCC-CCHHHHHHHHHHhhh
Confidence 1 25789999999 999999999988774
No 299
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=1.3e-12 Score=138.70 Aligned_cols=118 Identities=31% Similarity=0.504 Sum_probs=93.0
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCC----------------ccEEEEecCccccc
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDF----------------RKMSVADLPGLIEG 237 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~----------------~~~~i~D~PGl~~~ 237 (654)
.+..|||||+||||||||+|+|+|... .+++|||+|+.|+.|.+.+.+. ..+.++|+||+..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 345799999999999999999999887 7889999999999999988751 24799999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCC--CccChHHHHHHHHHHHHHHh
Q psy1086 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH--PKRSCVETVLLLNKELELYK 293 (654)
Q Consensus 238 ~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~--~~~~~~~~l~~~~~el~~~~ 293 (654)
++...+++..|+.++..+|.+++|+|+.+.. .+.+ ...+|+.++..+..++....
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~-~i~~v~~~~dP~~di~ildeel~~~D 155 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFDDA-EIIHVEGDVDPIRDLSIIVDELLIKD 155 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCCTT-CSSCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccccc-eeeeeccccCcchhhhhchhhhHHHH
Confidence 8888889999999999999999999986421 0111 11255666666665555443
No 300
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=4e-11 Score=127.24 Aligned_cols=94 Identities=35% Similarity=0.590 Sum_probs=83.4
Q ss_pred ecccceEEEEcCCCCChhhHHHHHHhcCC-CccCCCcccccceeEEEEeCCC----------------ceEEEEecCCCC
Q psy1086 421 LKLIADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDF----------------RKMSVADLPGLI 483 (654)
Q Consensus 421 ~~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~t~~~~~~~v~~~~~----------------~~~~i~DTpG~~ 483 (654)
+..+.+++++|.||+|||||+|+|++... ..+++|++|+++..+.+.+++. ..+.+|||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 45678999999999999999999999877 6678999999999999998862 257999999999
Q ss_pred CCCccccchhHHHHHHhhcccEEEEEEeCCC
Q psy1086 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNG 514 (654)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~ 514 (654)
...+..+.+...++.+++.+|++++|+|+++
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8887778888899999999999999999874
No 301
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.30 E-value=6.8e-12 Score=129.99 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=106.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc-CCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccc-cccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRA-RPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR-NLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~-~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~-~~~l~~~~l~~i~~ 254 (654)
.+|+|+|.+|||||||++++.+. .+...+++.+|.....+.+.+.+...+.+||+||....... ...+ ....+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~---~~~~~~~ 80 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQ---KDHIFQM 80 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTT---HHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhH---HHHHhcc
Confidence 37999999999999999998876 35556789999999999888766568999999997532100 0111 2223345
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-------HHHHHHHhcc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-------DGIRDTLHNL 327 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-------~~l~~~~~~l 327 (654)
++++++|+|+.. ....+.+..+..++..+.......|.++|+||+|+...+... +...+.....
T Consensus 81 ad~vi~V~D~t~---------~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 81 VQVLIHVFDVES---------TEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF 151 (307)
T ss_dssp CSEEEEEEETTC---------SCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCC---------hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence 788888999874 234455544444444444334578999999999998632221 1222222111
Q ss_pred ccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHH
Q psy1086 328 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRS 370 (654)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~ 370 (654)
. .....++.+||++. ++.+++..+..
T Consensus 152 g---------------~~~~~~~~tSa~~~--~i~e~~~~iv~ 177 (307)
T 3r7w_A 152 G---------------FPNLIGFPTSIWDE--SLYKAWSQIVC 177 (307)
T ss_dssp T---------------CCSCEEEECCTTSS--HHHHHHHHHHH
T ss_pred C---------------CCCeEEEEeeecCC--hHHHHHHHHHH
Confidence 0 00136899999984 66666655543
No 302
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.30 E-value=3.1e-12 Score=122.89 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=97.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|+|||||++.+++... ...+..|+.......+.+++. ..+.++|+||....... . ...+..+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~---~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRL----R---PLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT----G---GGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHH----h---HhhccCC
Confidence 3799999999999999999998653 344554544443444444432 23689999996443221 1 1223456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch---HhHHHHHHHHHhccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIH 332 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~---~~~~~~l~~~~~~l~~~i~ 332 (654)
+.+++|+|+... ..+..+. ...+..+.......|.++|+||+|+... ....+...+.....
T Consensus 96 d~~i~v~d~~~~---------~s~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----- 159 (194)
T 3reg_A 96 DVVLLCFAVNNR---------TSFDNIS--TKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL----- 159 (194)
T ss_dssp SEEEEEEETTCH---------HHHHHHH--HTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH-----
T ss_pred cEEEEEEECCCH---------HHHHHHH--HHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc-----
Confidence 788888888631 1222221 1122222222346899999999998642 11122222222211
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+...++.+||+++ .|++++++.+.+.+.
T Consensus 160 ------------~~~~~~~~Sa~~~-~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 160 ------------GCVAYIEASSVAK-IGLNEVFEKSVDCIF 187 (194)
T ss_dssp ------------TCSCEEECBTTTT-BSHHHHHHHHHHHHH
T ss_pred ------------CCCEEEEeecCCC-CCHHHHHHHHHHHHH
Confidence 1124899999999 999999999887654
No 303
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.30 E-value=4.4e-13 Score=150.74 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=43.6
Q ss_pred CCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHHHh
Q psy1086 273 HPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 273 ~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~~ 325 (654)
+..+....++|++++++..++.+|..+|.++++ +.+|.....+..+.+.+..+
T Consensus 220 ~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~ 276 (607)
T 3bk7_A 220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276 (607)
T ss_dssp TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 344667789999999999999999999999999 89998877776666665543
No 304
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.30 E-value=2e-12 Score=126.68 Aligned_cols=160 Identities=23% Similarity=0.198 Sum_probs=92.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeC-CC--ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD-DF--RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~-~~--~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
+|+|+|.+|||||||+++|++.... ..+..|............ +. ..+.++|+||...... +.. ..+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~---~~~~~ 84 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV----LKD---VYYIG 84 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC----CCH---HHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch----HHH---HHhhc
Confidence 7999999999999999999975432 222222222222222222 21 3589999999654321 222 22445
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++++++|+|+... .....+..+..++..+.. ...|.++|+||+|+.............+...
T Consensus 85 ~d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------- 146 (218)
T 4djt_A 85 ASGAILFFDVTSR---------ITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKG------- 146 (218)
T ss_dssp CSEEEEEEETTCH---------HHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTT-------
T ss_pred CCEEEEEEeCCCH---------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHH-------
Confidence 7788888888631 122222222222222211 3479999999999976433222222111110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.+ ..++.+||+++ .|++++++.+.+.+..
T Consensus 147 ---------~~-~~~~~~Sa~~g-~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 147 ---------KN-YEYFEISAKTA-HNFGLPFLHLARIFTG 175 (218)
T ss_dssp ---------CC-CEEEEEBTTTT-BTTTHHHHHHHHHHHC
T ss_pred ---------cC-CcEEEEecCCC-CCHHHHHHHHHHHHhc
Confidence 01 26899999999 9999999999877654
No 305
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.30 E-value=2.6e-12 Score=121.98 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||++.+++........|.++.......+.+++. ..+.++|+||........ ...+..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C-------CTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH-------HHHHhcC
Confidence 47999999999999999999975443222333333344445555441 368999999965432211 1223456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|++.. ..+......+..+... ....|.++|+||+|+...... .+...++....
T Consensus 82 d~~i~v~d~~~~------------~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~------ 143 (183)
T 2fu5_C 82 MGIMLVYDITNE------------KSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY------ 143 (183)
T ss_dssp SEEEEEEETTCH------------HHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH------
T ss_pred CEEEEEEECcCH------------HHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc------
Confidence 788888888631 1222222222222221 135789999999998653221 22222222211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ .+++.+||+++ .+++++++.+.+.+..
T Consensus 144 -----------~-~~~~~~Sa~~~-~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 144 -----------G-IKFMETSAKAN-INVENAFFTLARDIKA 171 (183)
T ss_dssp -----------T-CEEEECCC----CCHHHHHHHHHHHHHH
T ss_pred -----------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26899999999 9999999999876654
No 306
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.6e-12 Score=128.02 Aligned_cols=161 Identities=15% Similarity=0.070 Sum_probs=95.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+|+|.+|+|||||++.|++........|..+.......+.+++. ..+.++|+||....... . ...+..+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~---~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI----T---SAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC----C---GGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh----H---HHHhccC
Confidence 47999999999999999999987655544455555555556666542 26899999996543221 1 1223456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... ..+..+..+..++..+. ....|.++|+||+|+...... .++..++....
T Consensus 87 d~vilV~D~~~~---------~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~------- 148 (223)
T 3cpj_B 87 VGALIVYDISKS---------SSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN------- 148 (223)
T ss_dssp CEEEEEEC-CCH---------HHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEeCCCH---------HHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccccCHHHHHHHHHHc-------
Confidence 778888888631 12222222222222221 136788999999999753221 12222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+.+.+..
T Consensus 149 ----------~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 149 ----------Q-LLFTETSALNS-ENVDKAFEELINTIYQ 176 (223)
T ss_dssp ----------T-CEEEECCCC-C-CCHHHHHHHHHHHHTT
T ss_pred ----------C-CEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 26889999999 9999999998876643
No 307
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.30 E-value=3.1e-12 Score=124.75 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=100.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+++... ...|+.|+.......+.+++. ..+.+||+||........ ...+..++
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~d 82 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR-------PLSYRGAD 82 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHH-------HhhccCCC
Confidence 799999999999999999997543 355666665555455555542 268999999975433211 12344577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHH-HHHHHHHHHhHhhcCcceeEeecccCccchHhH---------HHHHHHHHhc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---------YDGIRDTLHN 326 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~-~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---------~~~l~~~~~~ 326 (654)
.+++|+|+... ..+..+. .+..++..+ ....|.++|+||+|+...... .+...+....
T Consensus 83 ~~ilv~d~~~~---------~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 83 IFVLAFSLISK---------ASYENVLKKWMPELRRF---APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp EEEEEEETTCH---------HHHHHHHHTHHHHHHHH---CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHHh---CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 88888888631 1222221 222222222 237899999999998654321 1222222111
Q ss_pred cccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 327 l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.+...++++||+++ .|++++++.+.+.+..
T Consensus 151 -----------------~~~~~~~~~Sa~~g-~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 151 -----------------IGAAAYIECSSKTQ-QNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp -----------------HTCSEEEECCTTTC-TTHHHHHHHHHHHHHC
T ss_pred -----------------cCCceEEEccCCCC-CCHHHHHHHHHHHHhh
Confidence 11126899999999 9999999998876644
No 308
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.29 E-value=8.5e-12 Score=145.80 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=99.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCc----------------cCCCcccccceeEEEEeC---------------CCce
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKI----------------ASYPFTTIKPNVGVITFD---------------DFRK 473 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~----------------~~~~~~t~~~~~~~v~~~---------------~~~~ 473 (654)
.+|+++|+.++|||||+++|+.....+ ....++|.......+.|. ....
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 589999999999999999998752111 113455665555555553 1247
Q ss_pred EEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy1086 474 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 553 (654)
Q Consensus 474 ~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~ 553 (654)
+.+|||||+.+ +...+..+++.||++++|+|++ +..++++...|.... ..+.|+|+|+
T Consensus 100 i~liDTPG~~d-------f~~~~~~~l~~aD~ailVvDa~---------~g~~~qt~~~~~~~~------~~~~p~ilvi 157 (842)
T 1n0u_A 100 INLIDSPGHVD-------FSSEVTAALRVTDGALVVVDTI---------EGVCVQTETVLRQAL------GERIKPVVVI 157 (842)
T ss_dssp EEEECCCCCCS-------SCHHHHHHHHTCSEEEEEEETT---------TBSCHHHHHHHHHHH------HTTCEEEEEE
T ss_pred EEEEECcCchh-------hHHHHHHHHHhCCEEEEEEeCC---------CCCCHHHHHHHHHHH------HcCCCeEEEE
Confidence 99999999765 4456778999999999999998 334455555454322 2468999999
Q ss_pred eCCCccC------hHHHHHHHHHHHHhhHhhhccCCC------CCCccccccccceEEEeeecCC
Q psy1086 554 NKMDVEG------AQEIYDGIRDTLHNLKDHIHKYPE------EFQPEKVIKFQSILPISAKTNS 606 (654)
Q Consensus 554 NK~Dl~~------~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~vSAktg~ 606 (654)
||+|+.. ..++...+.+.+..++..+..+.. .+.| ...++...||++|.
T Consensus 158 NK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p----~~~~v~~~sa~~g~ 218 (842)
T 1n0u_A 158 NKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYP----ARGTVAFGSGLHGW 218 (842)
T ss_dssp ECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCG----GGTCEEEEETTTTE
T ss_pred ECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeece----EEeeeEEeeccccc
Confidence 9999863 233444445445554444322110 0100 01146778999886
No 309
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.29 E-value=5.5e-12 Score=123.42 Aligned_cols=170 Identities=14% Similarity=0.080 Sum_probs=90.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.|++... ...|..|+.......+.+++. ..+.++|+||...... .....+..++
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~~~d 107 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-------LRPLFYPDAS 107 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH-------HHHHHhccCC
Confidence 799999999999999999997543 344555554444445555442 2588999999643221 1122345577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHH-HHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLN-KELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~-~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
++++|+|++.. ..+.... ..+..+.......|.++|+||+|+.......+.+...... ...
T Consensus 108 ~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~v~ 169 (214)
T 2j1l_A 108 VLLLCFDVTSP------------NSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLE------PVT 169 (214)
T ss_dssp EEEEEEETTCH------------HHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCC------CCC
T ss_pred EEEEEEECcCH------------HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccC------ccc
Confidence 88888888631 1222222 1222222223468999999999997654332222110000 000
Q ss_pred C-cc-chhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 E-EF-QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~-~~-~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
. +. ......+...++++||+++ .|++++++.+.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~SA~~g-~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 170 YHRGQEMARSVGAVAYLECSARLH-DNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHHHHTTCSEEEECBTTTT-BSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEecCCCC-CCHHHHHHHHHHHHHH
Confidence 0 00 0000112236899999999 9999999998876543
No 310
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.29 E-value=2.2e-12 Score=143.16 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=41.3
Q ss_pred CccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHHH
Q psy1086 274 PKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 274 ~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~ 323 (654)
..+..+..+|++++++..++++|..+|.++++ +.+|.....+..+.+++.
T Consensus 131 ~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l 184 (538)
T 3ozx_A 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184 (538)
T ss_dssp GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999 889987766666655554
No 311
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.29 E-value=4e-12 Score=122.18 Aligned_cols=157 Identities=22% Similarity=0.224 Sum_probs=95.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|.+|||||||++.+.+.... .+ ..|.......+.+.+ ..+.++|+||...... .....+..++.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 99 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN-ICFTVWDVGGQDKIRP-------LWRHYFQNTQG 99 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSCCE--EE-EEETTEEEEEEEETT-EEEEEEECC-----CT-------THHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcc--cc-CCcCceeEEEEEECC-EEEEEEECCCCHhHHH-------HHHHHhccCCE
Confidence 6999999999999999999865321 11 124444455566654 5799999999743211 12334567888
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|+... ..+.. ....+..+.. .....|.++|+||+|+..... .+++.+.+... ...
T Consensus 100 iilv~D~~~~---------~s~~~---~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~--~~~--- 161 (192)
T 2b6h_A 100 LIFVVDSNDR---------ERVQE---SADELQKMLQEDELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQ--HLR--- 161 (192)
T ss_dssp EEEEEETTCG---------GGHHH---HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGG--GCS---
T ss_pred EEEEEECCCH---------HHHHH---HHHHHHHHhcccccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcc--ccc---
Confidence 8999998632 12222 2233333222 234689999999999975422 22333322210 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
... ..++++||+++ .|++++++.+.+.+
T Consensus 162 -------~~~-~~~~~~SA~~g-~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 162 -------SRT-WYVQATCATQG-TGLYDGLDWLSHEL 189 (192)
T ss_dssp -------SCC-EEEEECBTTTT-BTHHHHHHHHHHHT
T ss_pred -------CCc-eEEEECcCCCc-CCHHHHHHHHHHHH
Confidence 001 25899999999 99999999987654
No 312
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.29 E-value=5.6e-12 Score=120.16 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=87.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC-CCCCCCCccccccceEEEEe------CCCccEEEEecCcccccccccccchHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRAR-PKIASYPFTTIKPNVGVITF------DDFRKMSVADLPGLIEGAHRNLGMGHQFLR 250 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~-~~i~~~~~tTl~p~~G~v~~------~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~ 250 (654)
+|+|+|++|||||||++.+++.. +....+..| .........+ .....+.+||+||...... +...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t-~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~--- 75 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSAT-VGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----THPH--- 75 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHHHHT----TSHH---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCCCccee-ccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----hhHH---
Confidence 69999999999999999999863 323333322 2222222211 1224689999999643221 1122
Q ss_pred HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccc
Q psy1086 251 HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 330 (654)
Q Consensus 251 ~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~ 330 (654)
.+..++++++|+|++.. ...+..+..++..+.......|.++|.||+|+...........+....+.
T Consensus 76 ~~~~~~~~i~v~d~~~~-----------~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-- 142 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKG-----------QAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELL-- 142 (184)
T ss_dssp HHHHSEEEEEEEEGGGC-----------HHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT--
T ss_pred HccCCcEEEEEEeCCcc-----------hhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHH--
Confidence 23345566667777531 11222233333332222236788888999999765432211111111110
Q ss_pred cccCCCccchhhhcccceEEEeecccCcc-chHHHHHHHHHHHHH
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNST-DVNDAKLKIRSILDL 374 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~-~i~~L~~~i~~~l~~ 374 (654)
..+. ......++.+||+++ . +++++++.+.+.+..
T Consensus 143 -~~~~-------~~~~~~~~~~Sa~~~-~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 143 -NKRG-------FPAIRDYHFVNATEE-SDALAKLRKTIINESLN 178 (184)
T ss_dssp -TCTT-------SCEEEEEEECCTTSC-CHHHHHHHHHHHHHHHC
T ss_pred -HhcC-------CcchhheEEEecccC-chhHHHHHHHHHHHHhc
Confidence 0000 000014789999999 7 899999888766544
No 313
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=6.7e-12 Score=120.44 Aligned_cols=169 Identities=14% Similarity=0.078 Sum_probs=98.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+.+.. ....++.|+.......+.+++. ..+.++|+||....... . ...+..++
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~---~~~~~~~d 91 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL----R---PLSYPMTD 91 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT----G---GGGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH----H---HHhcCCCC
Confidence 79999999999999999999863 3455666665555455555442 25789999997543321 1 12234567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~ 336 (654)
.+++|+|+... ..+..+. ...+..+.......|.++|+||+|+.......+.+.. .... ....
T Consensus 92 ~~i~v~d~~~~---------~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~--~v~~ 154 (194)
T 2atx_A 92 VFLICFSVVNP---------ASFQNVK--EEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLND----MKEK--PICV 154 (194)
T ss_dssp EEEEEEETTCH---------HHHHHHH--HTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTT----TTCC--CCCH
T ss_pred EEEEEEECCCH---------HHHHHHH--HHHHHHHHHhCCCCCEEEEEEChhhcccccchhhccc----ccCc--ccCH
Confidence 88888888631 1122221 0122222222247899999999999764322211110 0000 0000
Q ss_pred -cc-chhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 337 -EF-QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 337 -~~-~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.. ......+...++.+||+++ .|++++++.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~Sa~~g-~gi~~l~~~l~~~i 191 (194)
T 2atx_A 155 EQGQKLAKEIGACCYVECSALTQ-KGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHHHTCSCEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeeCCCC-CCHHHHHHHHHHHH
Confidence 00 0000112226899999999 99999999987654
No 314
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=135.02 Aligned_cols=94 Identities=34% Similarity=0.639 Sum_probs=60.9
Q ss_pred ecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEeCCCc----------------eEEEEecCCCCC
Q psy1086 421 LKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------------KMSVADLPGLIE 484 (654)
Q Consensus 421 ~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~~~~~----------------~~~i~DTpG~~~ 484 (654)
+..+.+|+++|.+|+|||||+|+|++.....+++|++|.++..+.+.+++.+ .+.+|||||+.+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3456799999999999999999999988767789999999999999887521 489999999998
Q ss_pred CCccccchhHHHHHHhhcccEEEEEEeCCC
Q psy1086 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNG 514 (654)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~ 514 (654)
+.+..+++...++.+++.||++++|+|+++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 877667777789999999999999999984
No 315
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.28 E-value=2.1e-12 Score=125.35 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=97.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||++.+++.. ....++.|+.......+.+++. ..+.++|+||....... ....+..+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~ 102 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL-------RPLSYPQT 102 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC-CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT-------GGGGCTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCC-CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH-------HHHHhccC
Confidence 379999999999999999998643 2445566665554445555442 13459999997543221 11233457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+.+++|+|++.. .....+. ...+..+.......|.++|+||+|+.......+.+.+..... + ...
T Consensus 103 d~~i~v~d~~~~---------~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---v-~~~ 167 (204)
T 4gzl_A 103 DVFLICFSLVSP---------ASFENVR--AKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP---I-TYP 167 (204)
T ss_dssp SEEEEEEETTCH---------HHHHHHH--HTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCC---C-CHH
T ss_pred CEEEEEEECCCH---------HHHHHHH--HHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhcccccc---c-cHH
Confidence 788888888631 1222221 011222222224789999999999976554333322210000 0 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
.........+..+++++||+++ .|++++++.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~SA~~g-~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGAVKYLECSALTQ-RGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTCSEEEECCTTTC-TTHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcEEEEeeCCCC-CCHHHHHHHHHHH
Confidence 0000001112235899999999 9999999988653
No 316
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.28 E-value=1.7e-12 Score=132.34 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=75.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCC------ccccccceEEEEeCCCc---cEEEEecCcccccccccccch---
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYP------FTTIKPNVGVITFDDFR---KMSVADLPGLIEGAHRNLGMG--- 245 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~------~tTl~p~~G~v~~~~~~---~~~i~D~PGl~~~~~~~~~l~--- 245 (654)
+|+|+|.+|+|||||+|+|.+......++| ..|..+........... .+.++||||+.+.......+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~ 89 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI 89 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHH
Confidence 689999999999999999999887777764 45555555555443222 689999999854322111111
Q ss_pred ----HHHHHHHHH-------------HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeeccc
Q psy1086 246 ----HQFLRHVER-------------TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKM 308 (654)
Q Consensus 246 ----~~~l~~i~~-------------~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~ 308 (654)
.+|...+.. +|+++++++..+. . .... ..++..... ...|.++|+||+
T Consensus 90 ~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~------~-~~~~------d~~~l~~l~--~~~pvi~V~nK~ 154 (274)
T 3t5d_A 90 DYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH------G-LKPL------DIEFMKRLH--EKVNIIPLIAKA 154 (274)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS------S-CCHH------HHHHHHHHT--TTSCEEEEESSG
T ss_pred HHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC------C-CCHH------HHHHHHHHh--ccCCEEEEEecc
Confidence 111222221 1123344433210 0 1111 111111111 178999999999
Q ss_pred CccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 309 DVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 309 D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
|+....+.........+.+.. .+ ..++.+||.++ ++++++.+.|.+.
T Consensus 155 D~~~~~e~~~~~~~i~~~l~~--------------~~-i~v~~~sa~~~-~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 155 DTLTPEECQQFKKQIMKEIQE--------------HK-IKIYEFPETDD-EEENKLVKKIKDR 201 (274)
T ss_dssp GGSCHHHHHHHHHHHHHHHHH--------------TT-CCCCCC------------CHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHH--------------cC-CeEEcCCCCCC-hhHHHHHHHHhcC
Confidence 997654432221111111100 01 25778899999 9999888777644
No 317
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=3.2e-12 Score=124.36 Aligned_cols=170 Identities=19% Similarity=0.166 Sum_probs=95.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.|++.... ..+..|+.......+.+++. ..+.++|+||........ ...+..++
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~d 98 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR-------PLSYPDTD 98 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTG-------GGGCTTCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHH-------HhhcCCCC
Confidence 6999999999999999999986543 33444444333344555441 257899999975432211 12234567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHH-HHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l-~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++.. ..+..+ ..+...+. ......|.++|+||+|+.......+.+.+..... +. ..
T Consensus 99 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---v~-~~ 162 (207)
T 2fv8_A 99 VILMCFSVDSP---------DSLENIPEKWVPEVK---HFCPNVPIILVANKKDLRSDEHVRTELARMKQEP---VR-TD 162 (207)
T ss_dssp EEEEEEETTCH---------HHHHHHHHTHHHHHH---HHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCC---CC-HH
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHH---HhCCCCCEEEEEEchhhhccccchhhhhhcccCC---CC-HH
Confidence 78888887631 122222 11222222 2224789999999999976544333332211100 00 00
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.........+...++++||+++ .|++++++.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~SA~~g-~gi~el~~~l~~~i 198 (207)
T 2fv8_A 163 DGRAMAVRIQAYDYLECSAKTK-EGVREVFETATRAA 198 (207)
T ss_dssp HHHHHHHHTTCSEEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeeCCCC-CCHHHHHHHHHHHH
Confidence 0000000112226899999999 99999999987654
No 318
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.28 E-value=3.1e-12 Score=141.68 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=107.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
-+|+|||.+|||||||++.|++.. .+ ..+.|.....+.+.+.+ ..+.++||||....... +..+++.++
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~-~~--~~~~T~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~-------~~~~~~~ad 391 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ-SV--TTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPL-------WRHYYTGTQ 391 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS-CC--CCCCCSSEEEEEEESSS-CEEEEEEECCCGGGSGG-------GGGGGTTCC
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC-CC--CcCCccceeEEEEEeCC-EEEEEEECCCcHHHHHH-------HHHHhccCC
Confidence 378999999999999999999876 22 23458888888888766 58999999996543322 234456788
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++++|+|++.. ..+..+ ..++..+.. .....|.++|+||+|+..... .+.+.+.+.... .
T Consensus 392 ~~i~V~D~~~~---------~s~~~~---~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~--~--- 453 (497)
T 3lvq_E 392 GLIFVVDCADR---------DRIDEA---RQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTR--I--- 453 (497)
T ss_dssp EEEEEEETTCG---------GGHHHH---HHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTT--C---
T ss_pred EEEEEEECcch---------hHHHHH---HHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhh--h---
Confidence 99999998742 223333 233333221 235789999999999975422 223333222100 0
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHh
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~ 375 (654)
......++++||+++ +|++++++.|.+.+...
T Consensus 454 --------~~~~~~~~~~SA~~g-~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 454 --------RDRNWYVQPSCATSG-DGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp --------CSSCEEEEECBTTTT-BTHHHHHHHHHHHCC--
T ss_pred --------hcCCeEEEEEECCCC-CCHHHHHHHHHHHHHhc
Confidence 001136899999999 99999999998776544
No 319
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.28 E-value=4.6e-12 Score=121.14 Aligned_cols=162 Identities=16% Similarity=0.143 Sum_probs=94.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|||||||++.|.+........+..+.......+.+++. ..+.++|+||..... ..+ ....+..+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~---~~~~~~~~ 94 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR---KSM---VQHYYRNV 94 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH---TTT---HHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh---hhh---hHHHhcCC
Confidence 37999999999999999999986554444444444455555666542 368999999964321 011 22334567
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|++.. ..+..+.....++..+.. ....|.++|+||+|+...... .+...++....
T Consensus 95 d~iilv~D~~~~---------~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~------- 157 (189)
T 1z06_A 95 HAVVFVYDMTNM---------ASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH------- 157 (189)
T ss_dssp CEEEEEEETTCH---------HHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHc-------
Confidence 888888888631 112222222222222211 246889999999999654322 12222221110
Q ss_pred CCccchhhhcccceEEEeecccCc--cchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNS--TDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~--~~i~~L~~~i~~~l 372 (654)
+ ..++.+||+++. .+++++++.+.+.+
T Consensus 158 ----------~-~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 158 ----------S-MPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp ----------T-CCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred ----------C-CEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 1 158899999861 46777777765543
No 320
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.6e-12 Score=143.05 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=39.1
Q ss_pred CccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHHHHH
Q psy1086 274 PKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 274 ~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~ 322 (654)
..+..+..+|++++++..++.++..+|.++++ +.+|.....+..+.+++
T Consensus 214 ~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~ 266 (608)
T 3j16_B 214 VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266 (608)
T ss_dssp GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHG
T ss_pred hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 34566788999999999999999999999998 78887666555554443
No 321
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.27 E-value=8.9e-12 Score=119.14 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=95.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|||||||++.+++.. ....|+.|+.......+.+++. ..+.++|+||...... + ...+..++
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~----~~~~~~~~ 93 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR-FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----C----ERYLNWAH 93 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----T----HHHHTTCS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----H----HHHHhhCC
Confidence 79999999999999999998854 3455555554333333444431 2578999999754321 2 12344567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH-hhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-NLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~-~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
.+++|+|++. ...+..+..+..++..+.. .....|.++|+||+|+...... .++..++....
T Consensus 94 ~~ilv~d~~~---------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~------- 157 (187)
T 3c5c_A 94 AFLVVYSVDS---------RQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF------- 157 (187)
T ss_dssp EEEEEEETTC---------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-------
T ss_pred EEEEEEECCC---------HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-------
Confidence 7788888863 1223333333333333221 1247899999999999653221 12222222211
Q ss_pred CCccchhhhcccceEEEeec-ccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISA-KTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA-~~~~~~i~~L~~~i~~~l 372 (654)
+ ..++.+|| +++ .+++++++.+.+.+
T Consensus 158 ----------~-~~~~e~Sa~~~g-~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 158 ----------G-CLFFEVSACLDF-EHVQHVFHEAVREA 184 (187)
T ss_dssp ----------T-CEEEECCSSSCS-HHHHHHHHHHHHHH
T ss_pred ----------C-CcEEEEeecCcc-ccHHHHHHHHHHHH
Confidence 1 16889999 899 99999999987654
No 322
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.26 E-value=7.5e-12 Score=118.79 Aligned_cols=171 Identities=17% Similarity=0.147 Sum_probs=97.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+++... ...+..|+.......+.+++. ..+.++|+||....... .. ..+..++
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~~---~~~~~~d 78 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL----RP---LSYPQTD 78 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT----GG---GGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH----HH---HhccCCc
Confidence 799999999999999999987533 344555554443334444432 24679999997543221 11 1234577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHH-HHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~-~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++.. ..+..+. .+...+.. .....|.++|+||+|+.......+.+.+..... + ...
T Consensus 79 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---v-~~~ 142 (186)
T 1mh1_A 79 VSLICFSLVSP---------ASFENVRAKWYPEVRH---HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP---I-TYP 142 (186)
T ss_dssp EEEEEEETTCH---------HHHHHHHHTHHHHHHH---HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCC---C-CHH
T ss_pred EEEEEEECCCh---------hhHHHHHHHHHHHHHH---hCCCCCEEEEeEcccccccchhhhhhccccccc---C-CHH
Confidence 88888888631 1122221 12222222 223789999999999976543332222110000 0 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.........+...++++||+++ .|++++++.+.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~g-~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 143 QGLAMAKEIGAVKYLECSALTQ-RGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHHHHHHTTCSEEEECCTTTC-TTHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCcEEEEecCCCc-cCHHHHHHHHHHHHh
Confidence 0000000112236899999999 999999999887653
No 323
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.26 E-value=7.2e-12 Score=129.28 Aligned_cols=164 Identities=17% Similarity=0.188 Sum_probs=71.5
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccCC-C------cccccceeEEEEe--CC-CceEEEEecCCCCCCC-------cc
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIASY-P------FTTIKPNVGVITF--DD-FRKMSVADLPGLIEGA-------HR 488 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~~-~------~~t~~~~~~~v~~--~~-~~~~~i~DTpG~~~~~-------~~ 488 (654)
+|+++|++|+|||||+++|.+...+..+. + ..|.......+.. ++ ...+.+|||||+.... ..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l 99 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 99 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHH
Confidence 56999999999999999998753322211 0 1122111111222 11 1268999999984321 11
Q ss_pred ccchhHHHHHHhhcc-------------cEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeC
Q psy1086 489 NLGMGHQFLRHVERT-------------KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNK 555 (654)
Q Consensus 489 ~~~~~~~~~~~~~~a-------------~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK 555 (654)
...+...+..+++.+ ++++++.+.+.. ++ +... . .+...+ ..+.|+++|+||
T Consensus 100 ~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~--~L-----d~~~-~-~~l~~l------~~~~~iilV~~K 164 (301)
T 2qnr_A 100 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH--GL-----KPLD-V-AFMKAI------HNKVNIVPVIAK 164 (301)
T ss_dssp HHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS--SC-----CHHH-H-HHHHHH------TTTSCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc--CC-----CHHH-H-HHHHHH------HhcCCEEEEEEe
Confidence 111112222444433 334444443311 11 1111 1 111211 135799999999
Q ss_pred CCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 556 MDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 556 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+|+...+++..... ++.+.... .++++|++||++| |++++|..+++.+.
T Consensus 165 ~Dl~~~~e~~~~~~----~~~~~~~~-----------~~~~~~e~Sa~~~--~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 165 ADTLTLKERERLKK----RILDEIEE-----------HNIKIYHLPDAES--DEDEDFKEQTRLLK 213 (301)
T ss_dssp GGGSCHHHHHHHHH----HHHHHHHH-----------TTCCCCCCC-----------CHHHHHHHH
T ss_pred CCCCCHHHHHHHHH----HHHHHHHH-----------cCCeEEecCCccc--cccHHHHHHHHHhh
Confidence 99987654322111 11111111 2346899999998 79999999988774
No 324
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.26 E-value=7.8e-12 Score=120.95 Aligned_cols=170 Identities=19% Similarity=0.156 Sum_probs=97.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+++.... ..|..|+.......+.+++. ..+.++|+||....... . ...+..++
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~d 98 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL----R---PLSYPDTD 98 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTT----G---GGGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHH----H---HHhcCCCC
Confidence 7999999999999999999986543 33444444444344555542 25889999996433211 1 11234567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHH-HHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l-~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|+... ..+..+ ..+...+. ......|.++|+||+|+.......+.+.+..... + ...
T Consensus 99 ~~i~v~d~~~~---------~s~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---v-~~~ 162 (201)
T 2gco_A 99 VILMCFSIDSP---------DSLENIPEKWTPEVK---HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEP---V-RSE 162 (201)
T ss_dssp EEEEEEETTCH---------HHHHHHHHTHHHHHH---HHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCC---C-CHH
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHH---HhCCCCCEEEEEecHHhhcCccchhhhcccccCc---C-CHH
Confidence 88888887631 122222 11222222 2224789999999999976543332222110000 0 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.........+...++++||+++ .|++++++.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~SA~~g-~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 163 EGRDMANRISAFGYLECSAKTK-EGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHTTCSEEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEeeCCCC-CCHHHHHHHHHHHH
Confidence 0000000112226899999999 99999999987654
No 325
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.25 E-value=2.1e-11 Score=116.23 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=93.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+|+|.+|||||||++.+++.... ..+..| .......+.+++. ..+.+||+||..... .+..++
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------~~~~~~ 87 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYV-QEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ------------FAAWVD 87 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCC-CCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH------------HHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh------------eecCCC
Confidence 7999999999999999998875432 223222 2222335555542 246779999964321 455678
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch--H-hHHHHHHHHHhcccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA--Q-EIYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~--~-~~~~~l~~~~~~l~~~i~~ 333 (654)
.+++|+|++.. ..+..+..+..++..+. .....|.++|.||+|+... . ...++..++....
T Consensus 88 ~~i~v~d~~~~---------~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~------ 151 (184)
T 3ihw_A 88 AVVFVFSLEDE---------ISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL------ 151 (184)
T ss_dssp EEEEEEETTCH---------HHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT------
T ss_pred EEEEEEECcCH---------HHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccCHHHHHHHHHHc------
Confidence 88889888731 12233222222222221 1246789999999998421 1 1122222222211
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+...++.+||+++ .+++++++.+.+.+..
T Consensus 152 -----------~~~~~~e~Sa~~~-~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 152 -----------KRCTYYETCATYG-LNVERVFQDVAQKVVA 180 (184)
T ss_dssp -----------TTCEEEEEBTTTT-BTHHHHHHHHHHHHHH
T ss_pred -----------CCCeEEEecCCCC-CCHHHHHHHHHHHHHH
Confidence 1126899999999 9999999998876543
No 326
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.25 E-value=1.6e-12 Score=125.92 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccc-cccceEEEEeCC---CccEEEEecCcccccccccccchHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTT-IKPNVGVITFDD---FRKMSVADLPGLIEGAHRNLGMGHQFLRH 251 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tT-l~p~~G~v~~~~---~~~~~i~D~PGl~~~~~~~~~l~~~~l~~ 251 (654)
.+|+++|.+|||||||++.|++.... ...++.|+ .+.....+.+++ ...+.++|+||..... ......
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 93 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK-------EQISQY 93 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH-------HHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH-------HHHHHH
Confidence 37999999999999999999986333 33454444 245566677665 2468999999974321 112222
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh----hcCcceeEeecccCccc-hHhH-HHHHHHHHh
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN----LLEKPIILLVNKMDVEG-AQEI-YDGIRDTLH 325 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~----l~~~P~ilvlNK~D~~~-~~~~-~~~l~~~~~ 325 (654)
+..++.+++|+|++.. ..+......+..+... ....|.++|+||+|+.. .... .++..++..
T Consensus 94 ~~~~d~~i~v~d~~~~------------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~ 161 (208)
T 2yc2_C 94 WNGVYYAILVFDVSSM------------ESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT 161 (208)
T ss_dssp CCCCCEEEEEEETTCH------------HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH
T ss_pred HhhCcEEEEEEECCCH------------HHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH
Confidence 3446778888887631 1222223333333222 14679999999999976 2221 222333322
Q ss_pred ccccccccCCCccchhhhcccceEEEeeccc-CccchHHHHHHHHHHHHHh
Q psy1086 326 NLKDHIHKYPEEFQPEKVIKFQSILPISAKT-NSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 326 ~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~-~~~~i~~L~~~i~~~l~~~ 375 (654)
.. + ..++.+||++ + .+++++++.+.+.+...
T Consensus 162 ~~-----------------~-~~~~~~Sa~~~~-~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 162 TN-----------------T-LDFFDVSANPPG-KDADAPFLSIATTFYRN 193 (208)
T ss_dssp HT-----------------T-CEEEECCC--------CHHHHHHHHHHHHH
T ss_pred Hc-----------------C-CEEEEeccCCCC-cCHHHHHHHHHHHHHHH
Confidence 21 1 2689999999 9 99999999998766543
No 327
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.25 E-value=2.7e-12 Score=121.48 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=87.4
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC-CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~-~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.-+|+++|.+|+|||||++.+.+... ...++.|+.......+.+++ ...+.++|+||....... . ...+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~---~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL----R---PLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------CEEECCCC-CTTTTT----G---GGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh----H---HhhccC
Confidence 34799999999999999999997542 33444443322211222222 124679999997543221 1 122345
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHH-HHHHHHHHHhHhhcCcceeEeecccCccchHhH-----------HHHHHH
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-----------YDGIRD 322 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~-~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-----------~~~l~~ 322 (654)
++.+++|+|+... ..+..+. .+..++..+ ....|.++|+||+|+...... .++..+
T Consensus 80 ~d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~ 147 (182)
T 3bwd_D 80 ADVFILAFSLISK---------ASYENVSKKWIPELKHY---APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE 147 (182)
T ss_dssp CSEEEEEEETTCH---------HHHHHHHHTHHHHHHHH---CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHHHHHh---CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH
Confidence 6788888888631 1222222 122222222 236899999999998654332 111111
Q ss_pred HHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 323 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 323 ~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.... .+...++++||+++ .|++++++.+.+.+
T Consensus 148 ~~~~-----------------~~~~~~~~~Sa~~~-~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 148 LKKL-----------------IGAPAYIECSSKSQ-ENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHH-----------------HTCSEEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred HHHH-----------------cCCCEEEEEECCCC-CCHHHHHHHHHHHH
Confidence 1111 11126899999999 99999999987654
No 328
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.25 E-value=8.8e-12 Score=119.07 Aligned_cols=159 Identities=19% Similarity=0.188 Sum_probs=99.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|.+|||||||++++.+.... ...| |.......+.+++ ..+.++|+||......... ..+..++.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~-------~~~~~~d~ 92 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKN-ISFEVWDLGGQTGVRPYWR-------CYFSDTDA 92 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETT-EEEEEEEECCSSSSCCCCS-------SSSTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECC-EEEEEEECCCCHhHHHHHH-------HHhhcCCE
Confidence 7999999999999999999764321 1122 4445556677665 5799999999754332211 12345788
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|++.. ..+.. ...++..+.. .....|.++|+||+|+..... .+++.+..... ...
T Consensus 93 ii~v~d~~~~---------~s~~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~--- 154 (189)
T 2x77_A 93 VIYVVDSTDR---------DRMGV---AKHELYALLDEDELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVS--SIM--- 154 (189)
T ss_dssp EEEEEETTCC---------TTHHH---HHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGG--GCC---
T ss_pred EEEEEeCCCH---------HHHHH---HHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChh--hcc---
Confidence 8899998731 12222 2233333222 124689999999999975422 12233222210 000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+ ..++++||+++ .+++++++.+.+.+..
T Consensus 155 -------~~~-~~~~~~Sa~~~-~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 155 -------NRT-WTIVKSSSKTG-DGLVEGMDWLVERLRE 184 (189)
T ss_dssp -------SSC-EEEEECCTTTC-TTHHHHHHHHHHHHHH
T ss_pred -------CCc-eEEEEccCCCc-cCHHHHHHHHHHHHHh
Confidence 001 26899999999 9999999999876644
No 329
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.23 E-value=2.3e-11 Score=119.42 Aligned_cols=152 Identities=11% Similarity=0.075 Sum_probs=88.1
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCC------ccCCCcccccce------eEEEEeCC-------------------Cce
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPK------IASYPFTTIKPN------VGVITFDD-------------------FRK 473 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~------~~~~~~~t~~~~------~~~v~~~~-------------------~~~ 473 (654)
.+|+++|.+|+|||||+++|++.... +...++++.+.. ...+.++. ...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 110 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCD 110 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCCC
Confidence 47999999999999999999876211 111222221110 00111111 126
Q ss_pred EEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy1086 474 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 553 (654)
Q Consensus 474 ~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~ 553 (654)
+.+|||||+... +.. +...++.+++|+|++... . ....+... .+.|.+||+
T Consensus 111 ~iiidt~G~~~~----~~~------~~~~~~~~i~vvd~~~~~-------~----~~~~~~~~--------~~~~~iiv~ 161 (221)
T 2wsm_A 111 LLLIENVGNLIC----PVD------FDLGENYRVVMVSVTEGD-------D----VVEKHPEI--------FRVADLIVI 161 (221)
T ss_dssp EEEEEEEEBSSG----GGG------CCCSCSEEEEEEEGGGCT-------T----HHHHCHHH--------HHTCSEEEE
T ss_pred EEEEeCCCCCCC----Cch------hccccCcEEEEEeCCCcc-------h----hhhhhhhh--------hhcCCEEEE
Confidence 889999995211 100 012578899999998321 1 11111111 247899999
Q ss_pred eCCCccChHH-HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 554 NKMDVEGAQE-IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 554 NK~Dl~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
||+|+.+... ...++.+.+.++ ....+++++||++|. |++++|+.+.+.+..
T Consensus 162 NK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~i~~~Sa~~g~-gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 162 NKVALAEAVGADVEKMKADAKLI----------------NPRAKIIEMDLKTGK-GFEEWIDFLRGILNV 214 (221)
T ss_dssp ECGGGHHHHTCCHHHHHHHHHHH----------------CTTSEEEECBTTTTB-THHHHHHHHHHHHC-
T ss_pred ecccCCcchhhHHHHHHHHHHHh----------------CCCCeEEEeecCCCC-CHHHHHHHHHHHHHH
Confidence 9999864321 122222222211 123468999999999 999999999887644
No 330
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.23 E-value=4.6e-11 Score=133.10 Aligned_cols=129 Identities=20% Similarity=0.266 Sum_probs=82.5
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCC---ccCCCcccccceeE------------------------------------
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPK---IASYPFTTIKPNVG------------------------------------ 464 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~---~~~~~~~t~~~~~~------------------------------------ 464 (654)
..+|+++|.+|+|||||+|+|++..+. .+..|+++......
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 468999999999999999999998764 44455543211000
Q ss_pred EEEeCCC--ceEEEEecCCCCCCCc--cccc--hhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHH
Q psy1086 465 VITFDDF--RKMSVADLPGLIEGAH--RNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE 538 (654)
Q Consensus 465 ~v~~~~~--~~~~i~DTpG~~~~~~--~~~~--~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~ 538 (654)
.+.+++. ..+.+|||||+.+... .... +...+..+++.+|++++|+|++. ....+....|...+.
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~---------~~~~~~~~~~l~~l~ 215 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK---------LEISDEFSEAIGALR 215 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS---------CCCCHHHHHHHHHTT
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc---------CCCCHHHHHHHHHHH
Confidence 0011100 2589999999976322 1111 44666778899999999999973 112233334433332
Q ss_pred HhhcccCCCCEEEEEeCCCccChHHHHH
Q psy1086 539 LYKMNLLEKPIILLVNKMDVEGAQEIYD 566 (654)
Q Consensus 539 ~~~~~~~~~p~iiv~NK~Dl~~~~~v~~ 566 (654)
..+.|+++|+||+|+....++..
T Consensus 216 -----~~~~pvilVlNK~Dl~~~~el~~ 238 (550)
T 2qpt_A 216 -----GHEDKIRVVLNKADMVETQQLMR 238 (550)
T ss_dssp -----TCGGGEEEEEECGGGSCHHHHHH
T ss_pred -----hcCCCEEEEEECCCccCHHHHHH
Confidence 23579999999999987665443
No 331
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.23 E-value=6.8e-12 Score=131.24 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=99.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+|+|.+|+|||||++.|++... ...+| |.......+...+ ..+.++||||...... + ....+..++.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~----~---~~~~~~~ad~ 235 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKN-ISFTVWDVGGQDKIRP----L---WRHYFQNTQG 235 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETT-EEEEEEECC-----CC----S---HHHHHTTEEE
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCc-EEEEEEECCCCHhHHH----H---HHHHhccCCE
Confidence 799999999999999999987542 22333 6666666676655 5799999999543221 2 2334556788
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++|+|+... ..+..+. ..+..+.. .....|.++|+||+|+..... .+.+.+.+.... ..
T Consensus 236 vilV~D~~~~---------~s~~~~~---~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~--~~--- 297 (329)
T 3o47_A 236 LIFVVDSNDR---------ERVNEAR---EELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHS--LR--- 297 (329)
T ss_dssp EEEEEETTCS---------SSHHHHH---HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTT--CC---
T ss_pred EEEEEECCch---------HHHHHHH---HHHHHHHhhhccCCCeEEEEEECccCCcccC-HHHHHHHhchhh--hh---
Confidence 8999998632 2223222 22222221 224788999999999976432 233333332110 00
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
. ....++.+||+++ .|++++++.|.+.+.
T Consensus 298 -------~-~~~~~~~vSAk~g-~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 -------H-RNWYIQATCATSG-DGLYEGLDWLSNQLR 326 (329)
T ss_dssp -------S-SCEEEEECBTTTT-BTHHHHHHHHHHHHT
T ss_pred -------c-CCCEEEEEECCCC-cCHHHHHHHHHHHHH
Confidence 0 0126899999999 999999999987654
No 332
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.21 E-value=1.6e-11 Score=118.59 Aligned_cols=161 Identities=20% Similarity=0.154 Sum_probs=96.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+|+|+||||||||+++|++........|..+..+..+.+.+++. ..+.++|+||..... .+...+. ..+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----~~~~~~~---~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR----RITSAYY---RGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT----CCCHHHH---TTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhh----hhhHHHH---hcC
Confidence 37999999999999999999997655555555556777888888763 246789999964322 1222222 234
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|+... .....+..+..++... .....|.++++||+|+...... .+.........
T Consensus 79 ~~~i~v~d~~~~---------~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~------- 140 (199)
T 2f9l_A 79 VGALLVYDIAKH---------LTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN------- 140 (199)
T ss_dssp SEEEEEEETTCH---------HHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccccccCcCHHHHHHHHHHc-------
Confidence 555666776521 1112221122222111 1235788999999998653221 11122222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ..++.+||+++ .+++++++.+.+.+..
T Consensus 141 ----------~-~~~~d~Sal~~-~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 141 ----------N-LSFIETSALDS-TNVEEAFKNILTEIYR 168 (199)
T ss_dssp ----------T-CEEEECCTTTC-TTHHHHHHHHHHHHHH
T ss_pred ----------C-CeEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 1 14677999999 9999999999877643
No 333
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.21 E-value=2.8e-12 Score=143.26 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=94.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC------CCCCCCCccccccceEEEEeCC---CccEEEEecCcccccccccccchHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRAR------PKIASYPFTTIKPNVGVITFDD---FRKMSVADLPGLIEGAHRNLGMGHQ 247 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~------~~i~~~~~tTl~p~~G~v~~~~---~~~~~i~D~PGl~~~~~~~~~l~~~ 247 (654)
.+|+|||.+|||||||++++++.. |.++.+.+++..|+.+.+..+. ...+.++|+||..... .+...
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----~~~~~ 117 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----ASHQF 117 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT----TTCHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH----HHHHH
Confidence 379999999999999999999876 3333333444334333333332 3479999999954322 23333
Q ss_pred HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh-HHHHHHHHHhc
Q psy1086 248 FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHN 326 (654)
Q Consensus 248 ~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~ 326 (654)
++ ..++++++|+|++.. +.+..+..++..+. ...|.++|+||+|+..... ..+.+.+....
T Consensus 118 ~l---~~~d~ii~V~D~s~~------------~~~~~~~~~l~~~~---~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~ 179 (535)
T 3dpu_A 118 FM---TRSSVYMLLLDSRTD------------SNKHYWLRHIEKYG---GKSPVIVVMNKIDENPSYNIEQKKINERFPA 179 (535)
T ss_dssp HH---HSSEEEEEEECGGGG------------GGHHHHHHHHHHHS---SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG
T ss_pred Hc---cCCcEEEEEEeCCCc------------hhHHHHHHHHHHhC---CCCCEEEEEECCCcccccccCHHHHHHHHHh
Confidence 43 347888999998742 22333444444443 3589999999999975433 22333333222
Q ss_pred cccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 327 l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
. + .+++++||+++ .|++++++.+.+.+..
T Consensus 180 ~-----------------~-~~~~~vSA~~g-~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 180 I-----------------E-NRFHRISCKNG-DGVESIAKSLKSAVLH 208 (535)
T ss_dssp G-----------------T-TCEEECCC------CTTHHHHHHHHHTC
T ss_pred c-----------------C-CceEEEecCcc-cCHHHHHHHHHHHHhc
Confidence 1 0 25899999999 9999999998876543
No 334
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.21 E-value=3.8e-11 Score=115.34 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=92.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.+|+|||.+|||||||++.+++.... ...++.++.+.....+.+++. ..+.++|++|.... ...+... ....
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~---~~~~~~~---~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE---NEWLHDH---CMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------CTTGGG---HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch---hhhHHHh---hccc
Confidence 37999999999999999999975443 344555444444455666542 14578999985321 1112222 2233
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhcccccccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~ 333 (654)
++.+++|.|+++ ...+.....+..++..+.. ....|.++|.||+|+...... .+....+...
T Consensus 81 ~~~~i~v~dv~~---------~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~------- 143 (192)
T 2cjw_A 81 GDAYLIVYSITD---------RASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSEGRAXAVV------- 143 (192)
T ss_dssp CSEEEEEEETTC---------HHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------
T ss_pred CCEEEEEEECCC---------HHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHHHHHHHHH-------
Confidence 566677777753 1222333323232322211 136789999999998643221 1111111110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+ ..++.+||+++ .|++++++.+.+.+.
T Consensus 144 ----------~~-~~~~e~SA~~g-~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 144 ----------FD-XKFIETSAAVQ-HNVKELFEGIVRQVR 171 (192)
T ss_dssp ----------TT-CEEEECBTTTT-BSHHHHHHHHHHHHH
T ss_pred ----------hC-CceEEeccccC-CCHHHHHHHHHHHHH
Confidence 00 25789999999 999999999887664
No 335
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.21 E-value=8.1e-12 Score=143.25 Aligned_cols=49 Identities=2% Similarity=-0.030 Sum_probs=41.3
Q ss_pred cChHHHHHHHHHHHHHHhHhhcCcce--eEee----cccCccchHhHHHHHHHHH
Q psy1086 276 RSCVETVLLLNKELELYKMNLLEKPI--ILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 276 ~~~~~~l~~~~~el~~~~~~l~~~P~--ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
+.+..++|++++++..++++|..+|. ++++ +.+|.....+..+.+.+..
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~ 251 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR 251 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 56678999999999999999999988 9998 8999988877776666543
No 336
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.20 E-value=1.8e-11 Score=139.03 Aligned_cols=115 Identities=21% Similarity=0.382 Sum_probs=83.8
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCc------------cC------CCcccccceeEEEEeCCCceEEEEecCCCCCC
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKI------------AS------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~------------~~------~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~ 485 (654)
..+|+++|+.++|||||..+|+.....+ .+ ..++|+......+.|++. .+.|+||||.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~-~iNlIDTPGH--- 77 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENT-KVNIIDTPGH--- 77 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSC-BCCCEECCCS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCE-EEEEEECCCc---
Confidence 3578999999999999999987432111 11 236777777778888874 7999999994
Q ss_pred CccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccCh
Q psy1086 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 561 (654)
Q Consensus 486 ~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~ 561 (654)
..|..++.+.++-+|++++|+|+.. |+..| +...|..-. ..+.|.|+++||+|.+..
T Consensus 78 ----~DF~~Ev~raL~~~DgavlVVDa~~---GV~~q------T~~v~~~a~------~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 78 ----MDFLAEVYRSLSVLDGAILLISAKD---GVQAQ------TRILFHALR------KMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp ----SSTHHHHHHHHTTCSEEECCEESSC---TTCSH------HHHHHHHHH------HHTCSCEECCEECCSSSC
T ss_pred ----HHHHHHHHHHHHHhCEEEEEEeCCC---CCcHH------HHHHHHHHH------HcCCCeEEEEeccccccC
Confidence 4577778899999999999999984 33332 222232211 246899999999998753
No 337
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.20 E-value=2.2e-11 Score=119.39 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=91.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCcccc-ccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTI-KPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl-~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+|||.+|+|||||++.+.... ....|..|.- +...-.+..++. ..+.+|||+|...+.. +.. .....+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~----l~~---~~~~~a 86 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS----LIP---SYIRDS 86 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTTTCGG----GHH---HHHTTC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh----HHH---HHhccc
Confidence 79999999999999999998643 2233332221 111223333332 2467999999754322 222 233456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|.|+.. ...++.+..+..++..... ...|.+||.||+|+...+.. .++..++....
T Consensus 87 ~~~ilv~di~~---------~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~------- 148 (216)
T 4dkx_A 87 AAAVVVYDITN---------VNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL------- 148 (216)
T ss_dssp SEEEEEEETTC---------HHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------
T ss_pred cEEEEEeecch---------hHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHh-------
Confidence 67777777763 2233444444444333322 35688889999998754322 12222222211
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+ ...+.+||+++ .|++++++.|.+.+..
T Consensus 149 ----------~-~~~~e~SAktg-~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 149 ----------N-VMFIETSAKAG-YNVKQLFRRVAAALPG 176 (216)
T ss_dssp ----------T-CEEEEEBTTTT-BSHHHHHHHHHHHC--
T ss_pred ----------C-CeeEEEeCCCC-cCHHHHHHHHHHHHHh
Confidence 1 15789999999 9999999998776543
No 338
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.20 E-value=1.2e-11 Score=121.08 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=96.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+|+|.+|||||||++.+++... ...|..|+.......+.+++. ..+.+||+||....... .. ..+..+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~---~~~~~~ 99 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV----RP---LCYSDS 99 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT----GG---GGCTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH----HH---HHcCCC
Confidence 3799999999999999999988543 344444443333333344332 25789999997543221 11 123457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHH-HHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH-------------HHHH
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVET-VLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY-------------DGIR 321 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~-l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~-------------~~l~ 321 (654)
+.+++|+|++.. ..+.. +..+..++..+ ....|.++|.||+|+....... +...
T Consensus 100 d~~i~v~d~~~~---------~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 100 DAVLLCFDISRP---------ETVDSALKKWRTEILDY---CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp SEEEEEEETTCT---------HHHHHHHTHHHHHHHHH---CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred eEEEEEEECcCH---------HHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 888888888731 12222 22233333322 3467999999999997532111 1111
Q ss_pred HHHhccccccccCCCccchhhhcccceEEEeecccCccc-hHHHHHHHHHHHHH
Q psy1086 322 DTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD-VNDAKLKIRSILDL 374 (654)
Q Consensus 322 ~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~-i~~L~~~i~~~l~~ 374 (654)
++.. ..+...++.+||+++ .+ ++++++.+.+.+..
T Consensus 168 ~~~~-----------------~~~~~~~~e~SA~~g-~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 168 AIAK-----------------QLGAEIYLEGSAFTS-EKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHH-----------------HHTCSEEEECCTTTC-HHHHHHHHHHHHHHHHC
T ss_pred HHHH-----------------HcCCCEEEEeccCCC-cccHHHHHHHHHHHHhc
Confidence 1111 112226899999999 98 99999998876543
No 339
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=1.2e-11 Score=120.74 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=90.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHH--H
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRH--V 252 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~--i 252 (654)
.+|+|||.+|||||||++.+.+.... ...++.++.......+.+++. ..+.++||+|.... ..++.. .
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~--------~~~l~~~~~ 109 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE--------NEWLHDHCM 109 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH--------HHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch--------hhhHHHHHH
Confidence 37999999999999999999975443 344554444444455666542 14678999984310 111111 1
Q ss_pred HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhcccccc
Q psy1086 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHI 331 (654)
Q Consensus 253 ~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i 331 (654)
..++.+++|+|+++ ...++.+..+..++.... .....|.++|.||+|+...... .++...+...
T Consensus 110 ~~a~~~ilVydvt~---------~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~----- 174 (211)
T 2g3y_A 110 QVGDAYLIVYSITD---------RASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVV----- 174 (211)
T ss_dssp CCCSEEEEEEETTC---------HHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH-----
T ss_pred hhCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH-----
Confidence 12345566666653 122233332222222211 1236899999999998643221 1111111111
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+ ..++.+||+++ .+++++++.+.+.+.
T Consensus 175 ------------~~-~~~~e~SAk~g-~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 175 ------------FD-CKFIETSAAVQ-HNVKELFEGIVRQVR 202 (211)
T ss_dssp ------------HT-CEEEECBTTTT-BSHHHHHHHHHHHHH
T ss_pred ------------cC-CEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 01 25789999999 999999999887653
No 340
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.19 E-value=2.5e-13 Score=131.31 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=92.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+|+|.+|||||||+++|++........+.++.......+.+++. ..+.++|+||........ ...+..+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT-------SSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS-------CC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH-------HHHhhcC
Confidence 37999999999999999999986555444555566666677776652 258999999965433221 1223456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHh-hcCcceeEeecccCccchHhHH-HHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN-LLEKPIILLVNKMDVEGAQEIY-DGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~-l~~~P~ilvlNK~D~~~~~~~~-~~l~~~~~~l~~~i~~ 333 (654)
+.+++|+|+... ..+..+ ...+..+... ....|.++|+||+|+....... +...+....
T Consensus 107 d~~i~v~d~~~~---------~s~~~~---~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~------- 167 (199)
T 3l0i_B 107 HGIIVVYDVTDQ---------ESFNNV---KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS------- 167 (199)
T ss_dssp SEEEECC-CCCS---------HHHHHH---HHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT-------
T ss_pred CEEEEEEECCCH---------HHHHHH---HHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHH-------
Confidence 788888888631 222333 3333222221 1267899999999986432110 001111110
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ ..++.+||+++ .+++++++.+.+.+
T Consensus 168 ----------~~-~~~~~vSA~~g-~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 168 ----------LG-IPFLETSAKNA-TNVEQSFMTMAAEI 194 (199)
T ss_dssp ----------TT-CCBCCCCC----HHHHHHHHHHTTTT
T ss_pred ----------cC-CeEEEEECCCC-CCHHHHHHHHHHHH
Confidence 01 25788999999 99999999886544
No 341
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.19 E-value=1.9e-11 Score=126.15 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=89.5
Q ss_pred hHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCccc
Q psy1086 439 TFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQL 517 (654)
Q Consensus 439 tl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~ 517 (654)
+++.+++...+. ....|++. +.....+.. + .++++||| +.++..... .|++.+|++++|||++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~-~-~~~~iwD~--qer~~~l~~-------~~~~~ad~vilV~D~~---- 95 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDE-T-GSGVIENV--LHRKNLLTK-------PHVANVDQVILVVTVK---- 95 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECCC-S-SSEEEEEE--CCCSCEETT-------TTEESCCEEEEEECSS----
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEcC-C-CeEEEEEE--ccccceeec-------cccccCCEEEEEEeCC----
Confidence 566777766554 34445554 333322222 2 27999999 666554443 5799999999999998
Q ss_pred CCCCCccc-hHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccc
Q psy1086 518 GLKHPKRS-CVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQS 596 (654)
Q Consensus 518 ~~~~~~~~-~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (654)
++. +++.+..|..++.. .+.|++||+||+|+.+.+++ ++..+ +.+ .... . .+
T Consensus 96 -----~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~~~~v-~~~~~-~~~---~~~~-----------~-~~ 148 (301)
T 1u0l_A 96 -----MPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYDEDDL-RKVRE-LEE---IYSG-----------L-YP 148 (301)
T ss_dssp -----TTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHH-HHHHH-HHH---HHTT-----------T-SC
T ss_pred -----CCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCCchhH-HHHHH-HHH---HHhh-----------h-Cc
Confidence 444 56777777765532 36899999999999876544 22221 111 1100 0 36
Q ss_pred eEEEeeecCCCChHHHHHHHH
Q psy1086 597 ILPISAKTNSTDVNDAKLKIR 617 (654)
Q Consensus 597 ~~~vSAktg~~gv~el~~~i~ 617 (654)
+|+|||++|. ||+++|..+.
T Consensus 149 ~~~~SAktg~-gv~~lf~~l~ 168 (301)
T 1u0l_A 149 IVKTSAKTGM-GIEELKEYLK 168 (301)
T ss_dssp EEECCTTTCT-THHHHHHHHS
T ss_pred EEEEECCCCc-CHHHHHHHhc
Confidence 8999999999 9999998775
No 342
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=129.69 Aligned_cols=171 Identities=17% Similarity=0.202 Sum_probs=71.5
Q ss_pred ceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccCCCcc------cccceeEE--EEeCCC-ceEEEEecCCCCC
Q psy1086 414 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFT------TIKPNVGV--ITFDDF-RKMSVADLPGLIE 484 (654)
Q Consensus 414 ~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~------t~~~~~~~--v~~~~~-~~~~i~DTpG~~~ 484 (654)
..+++|+ |+++|++|+|||||+++|++..+......+. |....... +...+. ..+.+|||||+..
T Consensus 27 l~~vsf~------I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 27 KRGFEFT------LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp C-CCCEE------EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred ecCCCEE------EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 3466664 5999999999999999999976532221111 11111111 111111 1689999999876
Q ss_pred CCccccchh-------HHHHHH-----------hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCC
Q psy1086 485 GAHRNLGMG-------HQFLRH-----------VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 546 (654)
Q Consensus 485 ~~~~~~~~~-------~~~~~~-----------~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~ 546 (654)
.......+. ..+..+ ++.+++.+++|+..+...++. ..+ ..|..++. .+
T Consensus 101 ~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~-----~~d--~~~lk~L~------~~ 167 (418)
T 2qag_C 101 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-----PLD--IEFMKRLH------EK 167 (418)
T ss_dssp -------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC-----HHH--HHHHHHHT------TT
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC-----HHH--HHHHHHHh------cc
Confidence 422111011 111222 233444444444432101111 111 13334332 26
Q ss_pred CCEEEEEeCCCccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHH
Q psy1086 547 KPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 619 (654)
Q Consensus 547 ~p~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~ 619 (654)
.|+|+|+||+|+...+++.....+....+. ..+++++++||+++. +++++|..+.+.
T Consensus 168 v~iIlVinK~Dll~~~ev~~~k~~i~~~~~---------------~~~i~~~~~sa~~~~-~v~~~~~~l~~~ 224 (418)
T 2qag_C 168 VNIIPLIAKADTLTPEECQQFKKQIMKEIQ---------------EHKIKIYEFPETDDE-EENKLVKKIKDR 224 (418)
T ss_dssp SEEEEEEESTTSSCHHHHHHHHHHHHHHHH---------------HHTCCCCCCC------------------
T ss_pred CcEEEEEEcccCccHHHHHHHHHHHHHHHH---------------HcCCeEEeCCCCCCc-CHHHHHHHHHhh
Confidence 899999999999876655432222111111 123567899999999 999998888764
No 343
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.19 E-value=1.6e-11 Score=123.94 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=71.7
Q ss_pred eEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEE
Q psy1086 473 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 552 (654)
Q Consensus 473 ~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv 552 (654)
.+.+|||||+.+..... .+......++.. +++++|+|++... +...+.....+. ... ....+.|+++|
T Consensus 110 d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~~------~~~~~~~~~~~~--~~~--~~~~~~p~~iv 177 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEILK------KPNDYCFVRFFA--LLI--DLRLGATTIPA 177 (262)
T ss_dssp SEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGCC------SHHHHHHHHHHH--HHH--HHHHTSCEEEE
T ss_pred CEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhhc------CHHHHHHHHHHH--HHH--hcccCCCeEEE
Confidence 68999999975432211 112233345556 8999999986321 222222111111 110 01135899999
Q ss_pred EeCCCccChHHHHHHHHHHHHh---hHhhhccCC--CCCC-------ccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 553 VNKMDVEGAQEIYDGIRDTLHN---LKDHIHKYP--EEFQ-------PEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 553 ~NK~Dl~~~~~v~~~~~~~~~~---~~~~~~~~~--~~~~-------~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+||+|+....++. ++.+.+.+ +.+.+..-+ ..|. ........+++++||++|+ |+++|++.|.+.+
T Consensus 178 ~NK~D~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~-gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 178 LNKVDLLSEEEKE-RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE-GFEDLETLAYEHY 255 (262)
T ss_dssp ECCGGGCCHHHHH-HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT-THHHHHHHHHHHH
T ss_pred EecccccccccHH-HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc-cHHHHHHHHHHHh
Confidence 9999997654321 11111111 100000000 0000 0000122368999999999 9999999999887
Q ss_pred HHH
Q psy1086 621 DLL 623 (654)
Q Consensus 621 ~~~ 623 (654)
+.+
T Consensus 256 ~~~ 258 (262)
T 1yrb_A 256 CTC 258 (262)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 344
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.19 E-value=4.3e-11 Score=115.22 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=95.6
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEE--e--CCCccEEEEecCcccccccccccchHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVIT--F--DDFRKMSVADLPGLIEGAHRNLGMGHQFLRH 251 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~--~--~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~ 251 (654)
..+|+++|.+|||||||++.+.+..... +..+..+....+. + .....+.+||+||....... .......
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP----TFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT----TCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh----hhhcccc
Confidence 3479999999999999999999853322 1111222222222 2 23347899999996543221 1000234
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhcc-ccc
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL-KDH 330 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l-~~~ 330 (654)
+..++.+++|+|+.. ...+.+..+...+..+.......|.++|.||+|+...+...+..+...... ..+
T Consensus 93 ~~~~~~~i~v~d~~~----------~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~ 162 (196)
T 3llu_A 93 FRGTGALIYVIDAQD----------DYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDL 162 (196)
T ss_dssp HHTCSEEEEEEETTS----------CCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCC----------chHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHH
Confidence 456888999999873 123344444444444433345789999999999876432221111110000 000
Q ss_pred cccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 331 i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
...... ..+ ..++.+||++ .+++++++.+.+.
T Consensus 163 ~~~~~~------~~~-~~~~e~Sa~~--~~v~~~f~~l~~~ 194 (196)
T 3llu_A 163 ADAGLE------KLH-LSFYLTSIYD--HSIFEAFSKVVQK 194 (196)
T ss_dssp HHTTCT------TSC-EEEEEECTTS--THHHHHHHHHHHH
T ss_pred HHhhhh------cCC-cceEEEEech--hhHHHHHHHHHHH
Confidence 000000 001 2688999998 6999999887654
No 345
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.19 E-value=1.8e-11 Score=118.96 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=93.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-+|+++|.+|||||||++.+++.... ..|..|+.......+.+++. ..+.+||+||....... .. ..+..+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~---~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----RP---LSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT----GG---GGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH----HH---hhccCC
Confidence 47999999999999999999985432 33443433333333444432 35799999997543221 11 123456
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHH-HHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l-~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|++.. ..+..+ ..+..++..+ ....|.++|+||+|+........++.+.... .+.
T Consensus 101 d~~ilv~D~~~~---------~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~v~-- 163 (205)
T 1gwn_A 101 DAVLICFDISRP---------ETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDVSTLVELSNHRQT---PVS-- 163 (205)
T ss_dssp SEEEEEEETTCH---------HHHHHHHHTHHHHHHHH---CTTCEEEEEEECGGGGGCHHHHHHHHTTTCC---CCC--
T ss_pred CEEEEEEECCCH---------HHHHHHHHHHHHHHHHH---CCCCCEEEEEechhhccchhhhhhhcccccC---CCC--
Confidence 778888888631 122222 2222233222 2468899999999997532221111100000 000
Q ss_pred CCccc-hhhhcccceEEEeecc-cCccchHHHHHHHHHHH
Q psy1086 335 PEEFQ-PEKVIKFQSILPISAK-TNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~-~~~~~~~~~v~~iSA~-~~~~~i~~L~~~i~~~l 372 (654)
..... -....+...++.+||+ ++ .|++++++.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~SAk~~~-~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 164 YDQGANMAKQIGAATYIECSALQSE-NSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHHHHTCSEEEECCTTTCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeeccCC-cCHHHHHHHHHHHH
Confidence 00000 0001111368999998 67 89999999887653
No 346
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.18 E-value=2e-11 Score=116.23 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=93.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|+++|.+|+|||||++.+++... ...|..|........+.+++. ..+.++|+||....... .. ..+..++
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~~---~~~~~~~ 80 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----RP---LSYPDSD 80 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT----GG---GGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh----HH---hhcCCCc
Confidence 689999999999999999998543 233443433333333444432 35789999997543221 11 1234567
Q ss_pred HHHHhhcccCcccCCCCCccChHHHH-HHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l-~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
.+++|+|++.. ..+..+ ..+..++..+ ....|.++|+||+|+........++...... ...
T Consensus 81 ~~i~v~d~~~~---------~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~v~ 142 (184)
T 1m7b_A 81 AVLICFDISRP---------ETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDVSTLVELSNHRQT------PVS 142 (184)
T ss_dssp EEEEEEETTCH---------HHHHHHHHTHHHHHHHH---CTTCEEEEEEECGGGGGCHHHHHHHHTTTCC------CCC
T ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHHHHH---CCCCCEEEEEEcchhhcchhhHhhhhhcccC------CCC
Confidence 78888888631 122222 2222333222 2468999999999997532221111100000 000
Q ss_pred Cc-cc-hhhhcccceEEEeecc-cCccchHHHHHHHHHHH
Q psy1086 336 EE-FQ-PEKVIKFQSILPISAK-TNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 336 ~~-~~-~~~~~~~~~v~~iSA~-~~~~~i~~L~~~i~~~l 372 (654)
.. .. -....+...++.+||+ ++ .+++++++.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~e~Sa~~~~-~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 143 YDQGANMAKQIGAATYIECSALQSE-NSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHHHHTCSEEEECBTTTBH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEeeecCCC-cCHHHHHHHHHHHH
Confidence 00 00 0001111368999998 68 89999999887654
No 347
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.18 E-value=4.1e-11 Score=116.89 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC--CccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD--FRKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~--~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.+|+++|.+|+|||||++.|++.. ....|+.++ .....+.+++ ...+.+|||||....... .....+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~~ 78 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQ------LLDRFKSS 78 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCS--CEEEEEECSSTTCCEEEEEECCCCHHHHHH------HHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccCCcc--eeeEEEEecCCCccEEEEEECCCChhHHHH------HHHHHHhh
Confidence 479999999999999999999754 344555333 3444566663 346999999997432110 11122445
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHH-HHHHHHHHHHhHhhcCcceeEeecccCccch
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETV-LLLNKELELYKMNLLEKPIILLVNKMDVEGA 313 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l-~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~ 313 (654)
++.+++|+|+... ....... ..+...+......-...|.++|+||+|+...
T Consensus 79 ~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 79 ARAVVFVVDSAAF--------QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp EEEEEEEEETTTH--------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCc--------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 6777888887521 0111111 1111111111111135789999999998654
No 348
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.18 E-value=1.4e-10 Score=114.20 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=89.5
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------------cE-EEE
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------------KM-SVA 229 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------------~~-~i~ 229 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.
T Consensus 20 l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~ 88 (224)
T 2pcj_A 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL-----------DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVF 88 (224)
T ss_dssp EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS-----------SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEEC
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEe
Confidence 5789999999999999999999999999999994 55777888775420 01 111
Q ss_pred ecCcccccc--cccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCccee
Q psy1086 230 DLPGLIEGA--HRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 302 (654)
Q Consensus 230 D~PGl~~~~--~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~i 302 (654)
+.|.+.... .++..+...+. ...++..-++..+++. +..+.....+|++++++..+++++..+|.+
T Consensus 89 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 89 QFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-------DKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-------TCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred cCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 222222111 11111111000 0011222233333332 334566788999999999999999999999
Q ss_pred Eee----cccCccchHhHHHHHHHH
Q psy1086 303 LLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 303 lvl----NK~D~~~~~~~~~~l~~~ 323 (654)
+++ +.+|........+.+.+.
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999 788887766666655544
No 349
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.18 E-value=4.2e-11 Score=114.93 Aligned_cols=158 Identities=22% Similarity=0.168 Sum_probs=95.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-cEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-KMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+|+|+||||||||+++|++........|..+..+..+.+.+++.. .+.++|+||..... .+...+ ...+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----~~~~~~---~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----AITSAY---YRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----CCCHHH---HTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----hhhHHH---hhcC
Confidence 379999999999999999999987666666666667778888887631 34569999975322 122222 1223
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH-HHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI-YDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~-~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|.... ...+.+..+..++... .....|.++++||+|+...... .+..+......
T Consensus 103 ~~~i~v~d~~~~---------~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~------- 164 (191)
T 1oix_A 103 VGALLVYDIAKH---------LTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN------- 164 (191)
T ss_dssp CEEEEEEETTCH---------HHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-------
T ss_pred CEEEEEEECcCH---------HHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHc-------
Confidence 344556665421 1111111111222111 1235788999999998653221 12222222110
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
. ..++.+||+++ .+++++++.+.+.
T Consensus 165 ----------~-~~~ld~Sald~-~~v~~l~~~l~~~ 189 (191)
T 1oix_A 165 ----------G-LSFIETSALDS-TNVEAAFQTILTE 189 (191)
T ss_dssp ----------T-CEEEECCTTTC-TTHHHHHHHHHHH
T ss_pred ----------C-CEEEEEeCCCC-CCHHHHHHHHHHH
Confidence 1 14677999999 9999999988754
No 350
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.17 E-value=4.1e-12 Score=124.82 Aligned_cols=157 Identities=20% Similarity=0.077 Sum_probs=94.5
Q ss_pred cEEEEcCCCCcHHHHHHH-HHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKA-ISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~-Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
+|+++|.+|||||||++. +.+... ...+.+.+|.......+.... ..+.++|+||...... +... .+..+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~----~~~~---~~~~~ 88 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGG----LRDG---YYIQA 88 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEE-EEEEEEEECSGGGTSC----CCHH---HHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE-EEEEEEeCCChHHHhH----HHHH---HHhcC
Confidence 699999999999999999 555422 223444444444433322111 3689999999643221 2222 33457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
+++++|+|+... ..+......+..+.......|.++|+||+|+....... .......
T Consensus 89 ~~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~---------- 145 (221)
T 3gj0_A 89 QCAIIMFDVTSR------------VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA-KSIVFHR---------- 145 (221)
T ss_dssp CEEEEEEETTCH------------HHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG-GGCCHHH----------
T ss_pred CEEEEEEECCCH------------HHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH-HHHHHHH----------
Confidence 788888888631 22222223333333323478999999999986532110 0000000
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+ ..++.+||+++ .|++++++.+.+.+..
T Consensus 146 -------~~~-~~~~~~Sa~~~-~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 146 -------KKN-LQYYDISAKSN-YNFEKPFLWLARKLIG 175 (221)
T ss_dssp -------HHT-CEEEECBGGGT-BTTTHHHHHHHHHHHT
T ss_pred -------HcC-CEEEEEeCCCC-CCHHHHHHHHHHHHHh
Confidence 011 26899999999 9999999999876644
No 351
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.17 E-value=8.2e-12 Score=121.41 Aligned_cols=162 Identities=15% Similarity=0.244 Sum_probs=84.4
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCC--CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARP--KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE 253 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~--~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~ 253 (654)
+.+|+|+|+||||||||+++|+|... .+.+.+++|.. .+.+.+++ .+.++|+||+...... ......+.+.+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~--~~~l~Dt~G~~~~~~~-~~~~~~~~~~~~ 100 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD--GKRLVDLPGYGYAEVP-EEMKRKWQRALG 100 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET--TEEEEECCCCC-------CCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC--CEEEEECcCCcccccC-HHHHHHHHHHHH
Confidence 34699999999999999999999752 22445555543 34444444 5889999997532111 011111211111
Q ss_pred -------HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHH
Q psy1086 254 -------RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDT 323 (654)
Q Consensus 254 -------~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~ 323 (654)
.++.+++++|+.. .. .. . ..++..+.. ....|.+++.||+|+....+. ...+.+.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~-------~~-~~-~-----~~~~~~~~~-~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRH-------PL-KD-L-----DQQMIEWAV-DSNIAVLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTS-------CC-CH-H-----HHHHHHHHH-HTTCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccEEEEEEECCC-------CC-ch-h-----HHHHHHHHH-HcCCCeEEEEecccCCCchhHHHHHHHHHHH
Confidence 1122333444431 11 11 1 111111111 256788889999998764322 2233333
Q ss_pred HhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 324 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 324 ~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
+.... .....+++||+++ .+++++++.+.+.+..
T Consensus 166 ~~~~~----------------~~~~~~~~Sal~~-~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 166 VLAFN----------------GDVQVETFSSLKK-QGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HGGGC----------------SCEEEEECBTTTT-BSHHHHHHHHHHHHC-
T ss_pred HHhcC----------------CCCceEEEeecCC-CCHHHHHHHHHHHHhh
Confidence 32210 0125789999999 9999999998876543
No 352
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.76 E-value=3.6e-12 Score=123.57 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=95.6
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVER 254 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~ 254 (654)
.-+|+++|.+|||||||++.+.+... ...+..|+.......+.+++. ..+.++|+||...... .....+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 101 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSYPQ 101 (204)
Confidence 34799999999999999999986433 334444544443334443331 2456999999643221 12234567
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHH-HHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhc-c-cccc
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHN-L-KDHI 331 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~-~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~-l-~~~i 331 (654)
++.+++|+|++.. ..+..+. .+...+..+ ....|.++|+||+|+.......+.+.+.... . ....
T Consensus 102 ~d~iilv~D~~~~---------~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 102 TDVFLICFSLVSP---------ASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 8999999998742 1111111 111222211 1267899999999997543222221111000 0 0000
Q ss_pred ccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHH
Q psy1086 332 HKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSI 371 (654)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~ 371 (654)
..+. ...+...++++||+++ .|++++++.+.+.
T Consensus 170 ~~~~------~~~~~~~~~~vSA~~g-~gi~~l~~~l~~~ 202 (204)
T 3th5_A 170 LAMA------KEIGAVKYLECSALTQ-RGLKTVFDEAIRA 202 (204)
Confidence 0000 0111125789999999 9999999887653
No 353
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.14 E-value=2e-11 Score=123.22 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHH
Q psy1086 244 MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 244 l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~ 323 (654)
..+++..+++++|++++|+|+...... +.+ ++. + + .+|.++|+||+|+..... .+.+.++
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~-----~~~---------~l~-l---l-~k~~iivlNK~DL~~~~~-~~~~~~~ 70 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFAT-----SAY---------GVD-F---S-RKETIILLNKVDIADEKT-TKKWVEF 70 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTT-----SCT---------TSC-C---T-TSEEEEEEECGGGSCHHH-HHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcC-----cCh---------HHH-h---c-CCCcEEEEECccCCCHHH-HHHHHHH
Confidence 346788899999999999999742110 110 001 1 1 789999999999986532 2333333
Q ss_pred HhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhhhhhhhhHHHHhhCCCcccc
Q psy1086 324 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNA 403 (654)
Q Consensus 324 ~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 403 (654)
++.. + .++ .+||.++ .++++|++.+.+.+
T Consensus 71 ~~~~-----------------g-~~v-~iSa~~~-~gi~~L~~~l~~~~------------------------------- 99 (262)
T 3cnl_A 71 FKKQ-----------------G-KRV-ITTHKGE-PRKVLLKKLSFDRL------------------------------- 99 (262)
T ss_dssp HHHT-----------------T-CCE-EECCTTS-CHHHHHHHHCCCTT-------------------------------
T ss_pred HHHc-----------------C-CeE-EEECCCC-cCHHHHHHHHHHhh-------------------------------
Confidence 3211 1 146 8999999 88887765542110
Q ss_pred CCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCC-ccCCCcccccceeEEEEeCCCceEEEEecCCC
Q psy1086 404 QNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIKPNVGVITFDDFRKMSVADLPGL 482 (654)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~-~~~~~~~t~~~~~~~v~~~~~~~~~i~DTpG~ 482 (654)
.+++++|.+|+|||||+|++.+.... ....+++|.... .+.++. .+.+|||||+
T Consensus 100 ---------------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~--~~~l~DtpG~ 154 (262)
T 3cnl_A 100 ---------------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLEN--GVKILDTPGI 154 (262)
T ss_dssp ---------------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECTT--SCEEESSCEE
T ss_pred ---------------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeCC--CEEEEECCCc
Confidence 37999999999999999999987653 455777777664 233433 6899999999
Q ss_pred CCCC
Q psy1086 483 IEGA 486 (654)
Q Consensus 483 ~~~~ 486 (654)
....
T Consensus 155 ~~~~ 158 (262)
T 3cnl_A 155 LYKN 158 (262)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8754
No 354
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.14 E-value=7.5e-10 Score=127.37 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=79.7
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhcCC------C------c------cCCCcccccceeEEEEeCC------CceEEEE
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRARP------K------I------ASYPFTTIKPNVGVITFDD------FRKMSVA 477 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~~~------~------~------~~~~~~t~~~~~~~v~~~~------~~~~~i~ 477 (654)
.+..+|+++|+..+|||||..+|+...- . . .-..++|+......+.|.+ ...+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 3456899999999999999999863210 0 0 1256778888777888863 2379999
Q ss_pred ecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Q psy1086 478 DLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMD 557 (654)
Q Consensus 478 DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~D 557 (654)
||||. ..|..++.+.++-+|++++|+|+... +. .++...|..-. ..+.|.|+++||+|
T Consensus 91 DTPGH-------vDF~~Ev~~aLr~~DgavlvVDaveG---V~------~qT~~v~~~a~------~~~lp~i~~iNKiD 148 (709)
T 4fn5_A 91 DTPGH-------VDFTIEVERSLRVLDGAVVVFCGTSG---VE------PQSETVWRQAN------KYGVPRIVYVNKMD 148 (709)
T ss_dssp CCCSC-------TTCHHHHHHHHHHCSEEEEEEETTTC---SC------HHHHHHHHHHH------HHTCCEEEEEECSS
T ss_pred eCCCC-------cccHHHHHHHHHHhCeEEEEEECCCC---Cc------hhHHHHHHHHH------HcCCCeEEEEcccc
Confidence 99994 44677788999999999999999843 22 23333343322 24799999999999
Q ss_pred ccCh
Q psy1086 558 VEGA 561 (654)
Q Consensus 558 l~~~ 561 (654)
....
T Consensus 149 r~~a 152 (709)
T 4fn5_A 149 RQGA 152 (709)
T ss_dssp STTC
T ss_pred ccCc
Confidence 8643
No 355
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.13 E-value=6.4e-11 Score=122.61 Aligned_cols=140 Identities=13% Similarity=0.118 Sum_probs=91.4
Q ss_pred cceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCC-CCCccchHHHHHHHHHHHH
Q psy1086 460 KPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGL-KHPKRSCVETVLLLNKELE 538 (654)
Q Consensus 460 ~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~-~~~~~~~~e~~~~~~~~l~ 538 (654)
......+.+++ .++++|||+|+. .++..|..|+++++++|+|+|++++...+ ...+...++....|..++.
T Consensus 156 Gi~~~~~~~~~-v~l~iwDtgGQe-------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 156 GIIEYPFDLQS-VIFRMVDVGGQR-------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp SEEEEEEEETT-EEEEEEEECCSH-------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred eEEEEEEEeec-eeeEEEEcCCch-------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 34555666666 489999999954 45556668999999999999998654333 2334556666555555553
Q ss_pred HhhcccCCCCEEEEEeCCCccChH---------------------HHHHHHHHHHHhhHhhhccCCCCCCccccccccce
Q psy1086 539 LYKMNLLEKPIILLVNKMDVEGAQ---------------------EIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSI 597 (654)
Q Consensus 539 ~~~~~~~~~p~iiv~NK~Dl~~~~---------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (654)
.. ....+.|+||++||+|+...+ +..+.+.+.+..+.. ...+.+.+
T Consensus 228 ~~-~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~------------~~~~~i~~ 294 (327)
T 3ohm_A 228 TY-PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNP------------DSDKIIYS 294 (327)
T ss_dssp TS-GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCT------------TTTSCEEE
T ss_pred hh-hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcc------------cccCCcEE
Confidence 21 223578999999999986543 111122222211100 11233457
Q ss_pred EEEeeecCCCChHHHHHHHHHHHH
Q psy1086 598 LPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 598 ~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
++|||+++. ||.++|..+.+.+-
T Consensus 295 ~~TsA~d~~-nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 295 HFTCATDTE-NIRFVFAAVKDTIL 317 (327)
T ss_dssp EECCTTCHH-HHHHHHHHHHHHHH
T ss_pred EEEEeecCH-HHHHHHHHHHHHHH
Confidence 889999999 99999999998764
No 356
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.13 E-value=2.1e-11 Score=126.66 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=94.4
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCC------CCCC---ccccccc--------------------------------
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKI------ASYP---FTTIKPN-------------------------------- 214 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i------~~~~---~tTl~p~-------------------------------- 214 (654)
..+|+++|.+|||||||+|+|+|..... ...| .++..|.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 3579999999999999999999975411 1223 1222110
Q ss_pred ------e----E------E--EEeCCCccEEEEecCccccccc------ccccchHHHHHHHHHHHHHHHhhcccCcccC
Q psy1086 215 ------V----G------V--ITFDDFRKMSVADLPGLIEGAH------RNLGMGHQFLRHVERTKLIAMIVDVNGFQLG 270 (654)
Q Consensus 215 ------~----G------~--v~~~~~~~~~i~D~PGl~~~~~------~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~ 270 (654)
. | . +......++.++||||+..... ....+......++..+|.+++|+|.....+
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~- 182 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL- 182 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-
Confidence 0 0 0 1222334799999999875321 112234455667777888888888742110
Q ss_pred CCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh-HHHHHHHHHhccccccccCCCccchhhhcccceE
Q psy1086 271 LKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSI 349 (654)
Q Consensus 271 ~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~-~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v 349 (654)
..... + ++..+.. -...|.++|+||+|+..... ..+.+ .. ....+ ...+.++
T Consensus 183 ----~~~~~--~-----~i~~~~~-~~~~~~i~v~NK~Dl~~~~~~~~~~~----~~---~~~~~--------~~~~~~v 235 (315)
T 1jwy_B 183 ----ANSDA--L-----QLAKEVD-PEGKRTIGVITKLDLMDKGTDAMEVL----TG---RVIPL--------TLGFIGV 235 (315)
T ss_dssp ----TTCSH--H-----HHHHHHC-SSCSSEEEEEECTTSSCSSCCCHHHH----TT---SSSCC--------TTCEEEC
T ss_pred ----hhhHH--H-----HHHHHhC-CCCCcEEEEEcCcccCCcchHHHHHH----hC---CCccC--------CCCeEEE
Confidence 00110 0 1111111 14689999999999875433 22222 11 00000 0122356
Q ss_pred EEeeccc---CccchHHHHHHHHHHHHH
Q psy1086 350 LPISAKT---NSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 350 ~~iSA~~---~~~~i~~L~~~i~~~l~~ 374 (654)
.++|+.+ + .++.++++.+.++++.
T Consensus 236 ~~~sa~~~~~~-~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 236 INRSQEDIIAK-KSIRESLKSEILYFKN 262 (315)
T ss_dssp CCCCHHHHSSS-CCHHHHHHHHHHHHHT
T ss_pred ecCChhhhccC-CCHHHHHHHHHHHHhC
Confidence 6677777 7 8999999998887764
No 357
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.13 E-value=2.8e-10 Score=111.00 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=91.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------cE-EEEecCcccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------KM-SVADLPGLIEGA 238 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------~~-~i~D~PGl~~~~ 238 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+-|.++...
T Consensus 25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T 1sgw_A 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-----------LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKI 93 (214)
T ss_dssp EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTS
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCC
Confidence 5789999999999999999999999999999994 56778888876521 11 122223322211
Q ss_pred c--ccccchHHHHH---HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccC
Q psy1086 239 H--RNLGMGHQFLR---HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMD 309 (654)
Q Consensus 239 ~--~~~~l~~~~l~---~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D 309 (654)
. ++..+...+.. ..++...++..+++. +. ......+|.+++++..++.++..+|.++++ +.+|
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVL-------DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-------CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred CHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-------cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 1 11111100000 011222222222222 23 456788999999999999999999999999 7899
Q ss_pred ccchHhHHHHHHHHH
Q psy1086 310 VEGAQEIYDGIRDTL 324 (654)
Q Consensus 310 ~~~~~~~~~~l~~~~ 324 (654)
........+.+.+..
T Consensus 166 ~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 166 EDSKHKVLKSILEIL 180 (214)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777666665543
No 358
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.13 E-value=6.3e-11 Score=124.51 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=89.4
Q ss_pred ccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCC-CCCccchHHHHHHHHHHH
Q psy1086 459 IKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGL-KHPKRSCVETVLLLNKEL 537 (654)
Q Consensus 459 ~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~-~~~~~~~~e~~~~~~~~l 537 (654)
.......+.+++ ..+.+|||+|+.+ ++..|..|++.++++|+|||++++...+ .++....++....|...+
T Consensus 181 ~Gi~~~~~~~~~-~~l~iwDt~GQe~-------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 181 TGIVETHFTFKD-LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CSEEEEEEEETT-EEEEEEEECCSGG-------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred eceEEEEEeeCC-eeEEEEeCCCchh-------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 334455666765 4899999999654 4455668899999999999999542111 111144566666666655
Q ss_pred HHhhcccCCCCEEEEEeCCCccChH--------------------HHHHHHHHHHHhhHhhhccCCCCCCccccccccce
Q psy1086 538 ELYKMNLLEKPIILLVNKMDVEGAQ--------------------EIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSI 597 (654)
Q Consensus 538 ~~~~~~~~~~p~iiv~NK~Dl~~~~--------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (654)
... ....+.|+|||+||+|+...+ +..+.+...+..+.. . ...+.+.+
T Consensus 253 ~~~-~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~---~--------~~~~~~~~ 320 (353)
T 1cip_A 253 CNN-KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK---R--------KDTKEIYT 320 (353)
T ss_dssp HTC-GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS---C--------TTTCCEEE
T ss_pred HcC-ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc---c--------cCCCceEE
Confidence 422 123578999999999986432 111111111111100 0 00123468
Q ss_pred EEEeeecCCCChHHHHHHHHHHHH
Q psy1086 598 LPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 598 ~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
++|||++|+ ||.++|+.+.+.+.
T Consensus 321 ~etSA~~~~-nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 321 HFTCATDTK-NVQFVFDAVTDVII 343 (353)
T ss_dssp EECCTTCHH-HHHHHHHHHHHHHH
T ss_pred EEEECcCch-hHHHHHHHHHHHHH
Confidence 999999999 99999999988764
No 359
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.12 E-value=2.8e-10 Score=115.39 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=91.6
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE------------EEEecC
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM------------SVADLP 232 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~------------~i~D~P 232 (654)
-.++|+|+++.|+.++|+|+||||||||+++|+|. +.|..|.|.+++. .+ .+.-+|
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~-~i~~~~~~~~~~~~~ig~v~ 90 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNK-PIDYSRKGIMKLRESIGIVF 90 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE-ECCCSHHHHHHHHHSEEEEC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCE-ECCcccccHHHHhCcEEEEE
Confidence 45799999999999999999999999999999994 5577888877652 11 011122
Q ss_pred cc-----cc-cccccccchHHH-----HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcce
Q psy1086 233 GL-----IE-GAHRNLGMGHQF-----LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPI 301 (654)
Q Consensus 233 Gl-----~~-~~~~~~~l~~~~-----l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ 301 (654)
+. .. ...++..++... ....+++..++..+++. +..+.....+|++++++..+++++..+|.
T Consensus 91 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 91 QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-------HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp SSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-------GGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 21 10 000111111000 00112233333333332 23356678899999999999999999999
Q ss_pred eEee----cccCccchHhHHHHHHHHH
Q psy1086 302 ILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 302 ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
++++ +.+|........+.+.+..
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHH
Confidence 9999 7889877776666665543
No 360
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.11 E-value=1.3e-10 Score=115.36 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=90.7
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------------cE-EEE
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------------KM-SVA 229 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------------~~-~i~ 229 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.
T Consensus 21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~ 89 (235)
T 3tif_A 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVF 89 (235)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEEC
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEe
Confidence 5789999999999999999999999999999994 56778888776520 01 122
Q ss_pred ecCcccccc--cccccchHH--------HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCc
Q psy1086 230 DLPGLIEGA--HRNLGMGHQ--------FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEK 299 (654)
Q Consensus 230 D~PGl~~~~--~~~~~l~~~--------~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~ 299 (654)
+.|.++... .++..+... -....+++.-++..+++.. ...+.....+|++++++..+++++..+
T Consensus 90 Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~LSgGq~QRv~iAral~~~ 163 (235)
T 3tif_A 90 QQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE------RFANHKPNQLSGGQQQRVAIARALANN 163 (235)
T ss_dssp TTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCG------GGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCCh------hhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 223332211 111111000 0011122222233333321 012456688999999999999999999
Q ss_pred ceeEee----cccCccchHhHHHHHHHHH
Q psy1086 300 PIILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 300 P~ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
|.++++ +.+|........+.+.+..
T Consensus 164 p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 164 PPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999 7888877766666655543
No 361
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.11 E-value=2.4e-10 Score=115.18 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=89.1
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-------------cE-EEEec
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------KM-SVADL 231 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-------------~~-~i~D~ 231 (654)
..+|+|++..|+.++|+|+||||||||+++|+|. +.|..|.+.+++.. .+ .+.+-
T Consensus 40 L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~ 108 (263)
T 2olj_A 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----------EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQR 108 (263)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSS
T ss_pred EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEECCCccccHHHHhCcEEEEeCC
Confidence 5689999999999999999999999999999994 55777888776520 01 11111
Q ss_pred Ccccccc--cccccchH-HH-----HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 232 PGLIEGA--HRNLGMGH-QF-----LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 232 PGl~~~~--~~~~~l~~-~~-----l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
|.++... .++..++. .+ ....+++..++..+++. +..+.....+|++++++..+++++..+|.++
T Consensus 109 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 109 FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-------DKAHAYPDSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-------hHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence 2222110 11111100 00 00011222333333332 2234566789999999999999999999999
Q ss_pred ee----cccCccchHhHHHHHHHH
Q psy1086 304 LV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 304 vl----NK~D~~~~~~~~~~l~~~ 323 (654)
++ +.+|........+.+.+.
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99 789987776666665554
No 362
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.10 E-value=8.1e-11 Score=126.63 Aligned_cols=163 Identities=22% Similarity=0.213 Sum_probs=95.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC-CCCCCccccc--------------c-----ceEEEEeCCCccEEEEecCcccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK-IASYPFTTIK--------------P-----NVGVITFDDFRKMSVADLPGLIE 236 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~-i~~~~~tTl~--------------p-----~~G~v~~~~~~~~~i~D~PGl~~ 236 (654)
-+|+++|.+|+|||||+++|++.... ...++.++.. + ....... ....+.++|+||..
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtPGh~- 86 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAPGHE- 86 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECCCCG-
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECCCcH-
Confidence 47999999999999999999985321 1111111110 0 0000000 01368999999953
Q ss_pred cccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH
Q psy1086 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI 316 (654)
Q Consensus 237 ~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~ 316 (654)
.+...+...+..+|.+++|+|+.... +..... +...+...+..+|.++++||+|+...++.
T Consensus 87 ------~~~~~~~~~~~~~D~~ilVvda~~~~---------~~~qt~----~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 147 (403)
T 3sjy_A 87 ------VLMATMLSGAALMDGAILVVAANEPF---------PQPQTR----EHFVALGIIGVKNLIIVQNKVDVVSKEEA 147 (403)
T ss_dssp ------GGHHHHHHHHTTCSEEEEEEETTSCS---------SCHHHH----HHHHHHHHHTCCCEEEEEECGGGSCHHHH
T ss_pred ------HHHHHHHHHHhhCCEEEEEEECCCCC---------CcHHHH----HHHHHHHHcCCCCEEEEEECccccchHHH
Confidence 34455666777788999999987310 011111 11112222334689999999999876543
Q ss_pred HHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 317 YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 317 ~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
.+.+.+..+.+.. + .....+++++||+++ .|+++|++.+.+.+.
T Consensus 148 ~~~~~~i~~~l~~----~--------~~~~~~ii~vSA~~g-~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 148 LSQYRQIKQFTKG----T--------WAENVPIIPVSALHK-INIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHHHTT----S--------TTTTCCEEECBTTTT-BSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHh----h--------CCCCCEEEEEECCCC-cChHHHHHHHHHhCC
Confidence 3222222111110 0 001136899999999 999999999987654
No 363
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.10 E-value=5.3e-10 Score=112.25 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=91.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc----------cE-EEEecCcc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR----------KM-SVADLPGL 234 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~----------~~-~i~D~PGl 234 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|.+
T Consensus 31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l 99 (256)
T 1vpl_A 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-----------IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGA 99 (256)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCC
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCccHHHHhhcEEEEcCCCCC
Confidence 5689999999999999999999999999999994 56778888776521 11 12222222
Q ss_pred cccc--cccccchHHHHH-----HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee--
Q psy1086 235 IEGA--HRNLGMGHQFLR-----HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV-- 305 (654)
Q Consensus 235 ~~~~--~~~~~l~~~~l~-----~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl-- 305 (654)
.... .++..+...+.. ..++...++..+++. +..+.....+|++++++..++.++..+|.++++
T Consensus 100 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 100 YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-------EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-------GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 2211 111111111100 011222333333333 223456678999999999999999999999999
Q ss_pred --cccCccchHhHHHHHHHHH
Q psy1086 306 --NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 306 --NK~D~~~~~~~~~~l~~~~ 324 (654)
+.+|........+.+.+..
T Consensus 173 Pts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 173 PTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTTTCCHHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHH
Confidence 7899877776666665543
No 364
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.10 E-value=3.3e-10 Score=111.41 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCccChHH-HHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 546 EKPIILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 546 ~~p~iiv~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+.|.+||+||+|+.+.+. ..+++.+.+..+ ....+++++||++|. ||+++|+.+.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRI----------------NPDAEVVLLSLKTME-GFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH----------------CTTSEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHh----------------CCCCeEEEEEecCCC-CHHHHHHHHHHHHH
Confidence 478899999999865422 122222222111 123478999999999 99999999987664
No 365
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.10 E-value=8e-11 Score=129.64 Aligned_cols=163 Identities=18% Similarity=0.189 Sum_probs=96.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCC-------------------------------CCCCccccccceEEEEeCCCcc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKI-------------------------------ASYPFTTIKPNVGVITFDDFRK 225 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i-------------------------------~~~~~tTl~p~~G~v~~~~~~~ 225 (654)
-+|+++|.+|+|||||++.|++....+ ...++.|.......+...+ ..
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~ 112 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-AN 112 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-CE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-ce
Confidence 479999999999999999997652211 1224556666666666655 58
Q ss_pred EEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 226 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 226 ~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
+.++||||... +...+...+..+|.+++|+|+..... ...+ .+.....+...+...+..+|.++++
T Consensus 113 ~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~------~~~~-~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 113 FTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAF------ESGF-DLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp EEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC------------C-CCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCcc------cccc-chhhhHHHHHHHHHHcCCCcEEEEE
Confidence 99999999743 45556677778899999999874100 0000 0011222333333444446789999
Q ss_pred cccCccch-HhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHH
Q psy1086 306 NKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDA 364 (654)
Q Consensus 306 NK~D~~~~-~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L 364 (654)
||+|+... ....+++.+.+........ + ......++++||+++ .|++++
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g-~--------~~~~~~~i~iSA~~g-~gi~el 228 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIG-F--------FEDNINWVPISGFSG-EGVYKI 228 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHT-C--------CGGGEEEEECCSSSC-TTSSSS
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcC-C--------CcccceEEEEeeecC-CCcccc
Confidence 99999752 2223333332221100000 0 000136899999999 999853
No 366
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.09 E-value=4.7e-11 Score=131.18 Aligned_cols=159 Identities=25% Similarity=0.376 Sum_probs=96.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCC-------CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARP-------KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFL 249 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~-------~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l 249 (654)
.+|+++|.+|+|||||+++|++... .....+++|.......+.+++ ..+.++|+||..+ +...+.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~iiDtPGh~~-------~~~~~~ 91 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-YRITLVDAPGHAD-------LIRAVV 91 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-EEEEECCCSSHHH-------HHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-EEEEEEECCChHH-------HHHHHH
Confidence 3799999999999999999998651 223345567766666676655 5899999999632 333445
Q ss_pred HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH---HHHHHHHHhc
Q psy1086 250 RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHN 326 (654)
Q Consensus 250 ~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~ 326 (654)
..+..+|.+++|+|+... ......+.+ .+.. ....|.++++||+|+...++. .+++.+.+..
T Consensus 92 ~~~~~aD~~ilVvda~~g------~~~qt~e~l--------~~~~-~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~ 156 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEG------PKTQTGEHM--------LILD-HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS 156 (482)
T ss_dssp HHTTSCCEEEEEEETTTC------SCHHHHHHH--------HHHH-HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEecCCC------ccHHHHHHH--------HHHH-HcCCCEEEEEECCCcccchhHHHHHHHHHHHHhh
Confidence 555667888999998631 001111111 1112 256788999999999864322 2222222221
Q ss_pred cccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 327 l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
... ....+++++||+++ .|+++|++.|.+.++
T Consensus 157 ~~~--------------~~~~~ii~vSA~~g-~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 157 THN--------------LKNSSIIPISAKTG-FGVDELKNLIITTLN 188 (482)
T ss_dssp SSS--------------GGGCCEEECCTTTC-TTHHHHHHHHHHHHH
T ss_pred hcc--------------cccceEEEEECcCC-CCHHHHHHHHHHhhc
Confidence 100 00136899999999 999999999988765
No 367
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.09 E-value=1.8e-10 Score=122.39 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=91.7
Q ss_pred eeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCC-CCCccchHHHHHHHHHHHHHh
Q psy1086 462 NVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGL-KHPKRSCVETVLLLNKELELY 540 (654)
Q Consensus 462 ~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~-~~~~~~~~e~~~~~~~~l~~~ 540 (654)
....+.+++ ..+.+|||+|+.+ ++..|..|++.++++|+|||++++...+ .+.+..+++....|..++...
T Consensus 208 ~~~~~~~~~-v~l~iwDtaGQe~-------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 208 FETKFQVDK-VNFHMFDVGGQRD-------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEEEETT-EEEEEEEECCSGG-------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred EEEEeecCC-ccceecccchhhh-------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 334566665 5899999999654 4455568899999999999999653222 233367788888887776432
Q ss_pred hcccCCCCEEEEEeCCCccChHH---HH---------------------------HHHHHHHH--hhHhhhccCCCCCCc
Q psy1086 541 KMNLLEKPIILLVNKMDVEGAQE---IY---------------------------DGIRDTLH--NLKDHIHKYPEEFQP 588 (654)
Q Consensus 541 ~~~~~~~p~iiv~NK~Dl~~~~~---v~---------------------------~~~~~~~~--~~~~~~~~~~~~~~~ 588 (654)
....+.|+|||+||+|+...+. +. .+....+. .+.+......
T Consensus 280 -~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~----- 353 (402)
T 1azs_C 280 -RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASG----- 353 (402)
T ss_dssp -TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSC-----
T ss_pred -ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccc-----
Confidence 1235789999999999865432 10 01111110 0011100000
Q ss_pred cccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 589 EKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 589 ~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
...+.+.+++|||+++. ||+++|..+.+.+..
T Consensus 354 -~~~~~~~~~~TSA~d~~-nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 354 -DGRHYCYPHFTCAVDTE-NIRRVFNDCRDIIQR 385 (402)
T ss_dssp -TTSSCEEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred -ccCcccEEEEEEeecCc-CHHHHHHHHHHHHHH
Confidence 00012346899999999 999999999887753
No 368
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.08 E-value=9.3e-11 Score=127.37 Aligned_cols=166 Identities=17% Similarity=0.245 Sum_probs=95.1
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCC-------------------------------CCCccccccceEEEEeCCCc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIA-------------------------------SYPFTTIKPNVGVITFDDFR 224 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~-------------------------------~~~~tTl~p~~G~v~~~~~~ 224 (654)
.-+|+++|.+|+|||||++.|.+....+. ..+.+|.......+.+.+ .
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~-~ 95 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK-K 95 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-e
Confidence 34799999999999999999965422211 113456665555666655 4
Q ss_pred cEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcc-eeE
Q psy1086 225 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IIL 303 (654)
Q Consensus 225 ~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P-~il 303 (654)
.+.++||||... +...+...+..+|.+++|+|+..... ...++.. ....+...+... ...| .++
T Consensus 96 ~~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~------e~~~~~~-~qt~e~l~~~~~-~~v~~iIv 160 (439)
T 3j2k_7 96 HFTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKGEF------ETGFEKG-GQTREHAMLAKT-AGVKHLIV 160 (439)
T ss_pred EEEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCCcc------ccccCCC-chHHHHHHHHHH-cCCCeEEE
Confidence 899999999643 34455666778899999999974210 0000000 001111112222 4556 788
Q ss_pred eecccCccchHh---HHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHH
Q psy1086 304 LVNKMDVEGAQE---IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 366 (654)
Q Consensus 304 vlNK~D~~~~~~---~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~ 366 (654)
++||+|+....+ ..+.+.+.+..+ ...+. +.+ ....+++++||+++ .|+.++.+
T Consensus 161 viNK~Dl~~~~~~~~~~~~i~~~~~~~---l~~~g--~~~---~~~~~~i~iSA~~G-~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNWSNERYEECKEKLVPF---LKKVG--FNP---KKDIHFMPCSGLTG-ANLKEQSD 217 (439)
T ss_pred EeecCCCcccchHHHHHHHHHHHHHHH---HHHhc--ccc---cCCeeEEEeeccCC-cccccccc
Confidence 999999864322 222222222111 10000 000 00136899999999 99998765
No 369
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.07 E-value=3.4e-11 Score=123.99 Aligned_cols=165 Identities=17% Similarity=0.217 Sum_probs=90.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC------CCCCCc----------------------cccccce-----------E-
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK------IASYPF----------------------TTIKPNV-----------G- 216 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~------i~~~~~----------------------tTl~p~~-----------G- 216 (654)
.+|+++|.+|||||||+++|+|.... +...|. +|..... |
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~ 106 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence 47999999999999999999997642 223342 3332100 0
Q ss_pred -----------EEEeCCCccEEEEecCccccccc----cc--ccchHHHHHHHHHHHHH-HHhhcccCcccCCCCCccCh
Q psy1086 217 -----------VITFDDFRKMSVADLPGLIEGAH----RN--LGMGHQFLRHVERTKLI-AMIVDVNGFQLGLKHPKRSC 278 (654)
Q Consensus 217 -----------~v~~~~~~~~~i~D~PGl~~~~~----~~--~~l~~~~l~~i~~~~~i-l~vvd~~~~~l~~~~~~~~~ 278 (654)
.+.......+.++||||+..... .. ..+......++..++.+ ++|+|+... ....
T Consensus 107 ~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~------~~~~- 179 (299)
T 2aka_B 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD------LANS- 179 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC------GGGC-
T ss_pred CCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc------hhhh-
Confidence 11112224799999999875321 11 01222333444444433 367777531 0011
Q ss_pred HHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCc
Q psy1086 279 VETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS 358 (654)
Q Consensus 279 ~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~ 358 (654)
++..+. ..+.. ...|.++|+||+|+........ +.++.. ...+ ..++..++++||+++
T Consensus 180 --~~~~~~---~~~~~--~~~~~i~V~NK~Dl~~~~~~~~---~~~~~~---~~~~--------~~~~~~v~~~SA~~~- 237 (299)
T 2aka_B 180 --DALKIA---KEVDP--QGQRTIGVITKLDLMDEGTDAR---DVLENK---LLPL--------RRGYIGVVNRSQKDI- 237 (299)
T ss_dssp --HHHHHH---HHHCT--TCSSEEEEEECGGGSCTTCCCH---HHHTTC---SSCC--------TTCEEECCCCCCBCT-
T ss_pred --HHHHHH---HHhCC--CCCeEEEEEEccccCCCCchHH---HHHhCC---cCcC--------CCCcEEEECCChhhc-
Confidence 111111 11111 4679999999999975433111 111110 0000 012236789999999
Q ss_pred cchHHHHHHHHH
Q psy1086 359 TDVNDAKLKIRS 370 (654)
Q Consensus 359 ~~i~~L~~~i~~ 370 (654)
.+++++++.+.+
T Consensus 238 ~gi~~l~~~l~~ 249 (299)
T 2aka_B 238 DGKKDITAALAA 249 (299)
T ss_dssp TSCBCHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 999999988875
No 370
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.07 E-value=4.3e-10 Score=112.83 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=89.5
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE-EEEecCccccc--ccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM-SVADLPGLIEG--AHRNL 242 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~-~i~D~PGl~~~--~~~~~ 242 (654)
..+++|++..|+.++|+|+||||||||+++|+|. +.|..|.+.+.. .+ .+.+.|.+... ..++.
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~~--~i~~v~q~~~~~~~~tv~enl 87 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-----------HRPIQGKIEVYQ--SIGFVPQFFSSPFAYSVLDIV 87 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS-----------SCCSEEEEEECS--CEEEECSCCCCSSCCBHHHHH
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEec--cEEEEcCCCccCCCCCHHHHH
Confidence 5789999999999999999999999999999994 556777776432 12 22222332211 11111
Q ss_pred cchHH---------HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccC
Q psy1086 243 GMGHQ---------FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMD 309 (654)
Q Consensus 243 ~l~~~---------~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D 309 (654)
.++.. -....++...++..+++. +..+.....+|++++++..+++++..+|.++++ +.+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 160 (253)
T 2nq2_C 88 LMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-------HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160 (253)
T ss_dssp HGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-------GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred HHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 11100 000112233333333433 222456678999999999999999999999999 7889
Q ss_pred ccchHhHHHHHHHHH
Q psy1086 310 VEGAQEIYDGIRDTL 324 (654)
Q Consensus 310 ~~~~~~~~~~l~~~~ 324 (654)
........+.+.+..
T Consensus 161 ~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 161 LANQDIVLSLLIDLA 175 (253)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877766666665543
No 371
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.07 E-value=1.8e-10 Score=120.90 Aligned_cols=138 Identities=10% Similarity=0.093 Sum_probs=84.4
Q ss_pred ceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCC-CCccchHHHHHHHHHHHHHhhcccCCCCEE
Q psy1086 472 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLK-HPKRSCVETVLLLNKELELYKMNLLEKPII 550 (654)
Q Consensus 472 ~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~-~~~~~~~e~~~~~~~~l~~~~~~~~~~p~i 550 (654)
.++.+|||+|+.++ +..+..|++.++++|+|||++++...+. +.+..+++....|.+++.... ...+.|+|
T Consensus 183 v~l~iwDtaGQe~~-------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~pii 254 (354)
T 2xtz_A 183 EVYRLFDVGGQRNE-------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFM 254 (354)
T ss_dssp -EEEEEEECCSTTG-------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEE
T ss_pred eeeEEEECCCchhh-------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEE
Confidence 37999999997654 3445588999999999999986544332 335677777777776664321 23578999
Q ss_pred EEEeCCCccChHHH---------------------HHHHHHHH-Hh-hHhhhccCCCCCCccccccccceEEEeeecCCC
Q psy1086 551 LLVNKMDVEGAQEI---------------------YDGIRDTL-HN-LKDHIHKYPEEFQPEKVIKFQSILPISAKTNST 607 (654)
Q Consensus 551 iv~NK~Dl~~~~~v---------------------~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~ 607 (654)
||+||+|+...+.. ..+....+ .. +.+........ ........+++|||++++
T Consensus 255 LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~---~~~~~~~~~~eTSA~d~~- 330 (354)
T 2xtz_A 255 LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAP---DRVDRVFKIYRTTALDQK- 330 (354)
T ss_dssp EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCT---TTTTSCEEEEECCTTCHH-
T ss_pred EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccc---cccCcceEEEEEEeecch-
Confidence 99999998643210 00111111 11 00000000000 000011236899999999
Q ss_pred ChHHHHHHHHHHHH
Q psy1086 608 DVNDAKLKIRSILD 621 (654)
Q Consensus 608 gv~el~~~i~~~~~ 621 (654)
||+++|+.+.+.+.
T Consensus 331 nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 331 LVKKTFKLVDETLR 344 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988764
No 372
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.06 E-value=3.5e-10 Score=117.52 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=94.3
Q ss_pred ccceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCC-CCCccchHHHHHHHHHHH
Q psy1086 459 IKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGL-KHPKRSCVETVLLLNKEL 537 (654)
Q Consensus 459 ~~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~-~~~~~~~~e~~~~~~~~l 537 (654)
.......+.+++ .++++|||+| ++.++..|..|++.++++|+|+|++++...+ .+.+...++....|...+
T Consensus 149 iGi~~~~~~~~~-v~l~iwDtaG-------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 149 TGIHEYDFVVKD-IPFHLIDVGG-------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CSCEEEEEESSS-CEEEEEECCS-------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred eeeEEEEEEeee-eeeccccCCC-------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 445555666666 4899999999 4557788889999999999999998654332 233455666666666555
Q ss_pred HHhhcccCCCCEEEEEeCCCccChHHHHHH-------------HHHHHHhhHhhh------ccCCCCCCc--c----ccc
Q psy1086 538 ELYKMNLLEKPIILLVNKMDVEGAQEIYDG-------------IRDTLHNLKDHI------HKYPEEFQP--E----KVI 592 (654)
Q Consensus 538 ~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~-------------~~~~~~~~~~~~------~~~~~~~~~--~----~~~ 592 (654)
... ....+.|+||++||+|+...+..... ..+..+.+.+.. ........+ . ...
T Consensus 221 ~~~-~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (340)
T 4fid_A 221 MTN-EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVN 299 (340)
T ss_dssp HHC-GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------
T ss_pred hhh-hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccC
Confidence 432 22357899999999998654321100 111111111111 000000000 0 000
Q ss_pred cccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 593 KFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 593 ~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
+.+.+++|||++.. ||..+|..+.+.+-+
T Consensus 300 ~~iy~h~TsA~dt~-nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 300 EKVYTNPTNATDGS-NIKRVFMLAVDVIMK 328 (340)
T ss_dssp CEEEEEEECTTCHH-HHHHHHHHHHHHHHH
T ss_pred cceEEEEEEeeCcH-HHHHHHHHHHHHHHH
Confidence 23567999999999 999999999987754
No 373
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.06 E-value=1.7e-10 Score=120.34 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=99.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
.+|+++|.+|+|||||++.+++... ...++.|+.......+..++. ..+.++|+||....... . ...+..+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----~---~~~~~~~ 227 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL----R---PLSYPQT 227 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT----G---GGGCTTC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH----H---HHhccCC
Confidence 4799999999999999999987533 455666665555555555442 13459999997543221 1 1223457
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHH-HHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVL-LLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~-~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
+.+++|+|++.. ..+..+. .+..++..+ ....|.++|+||+|+.......+.+.+.... ..
T Consensus 228 d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~v 289 (332)
T 2wkq_A 228 DVFLICFSLVSP---------ASFHHVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLT------PI 289 (332)
T ss_dssp SEEEEEEETTCH---------HHHHHHHHTHHHHHHHH---CTTSCEEEEEECHHHHTCHHHHHHHHHTTCC------CC
T ss_pred CEEEEEEeCCCH---------HHHHHHHHHHHHHHHhh---CCCCcEEEEEEchhcccccchhhhccccccc------cc
Confidence 788888888631 1222221 122222222 2378999999999997543322222111000 00
Q ss_pred CCc-c-chhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEE-F-QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~-~-~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
... . .-....+...++++||+++ .|++++++.+.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 290 TYPQGLAMAKEIGAVKYLECSALTQ-RGLKTVFDEAIRAV 328 (332)
T ss_dssp CHHHHHHHHHHTTCSEEEECCTTTC-TTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCcEEEEecCCCC-cCHHHHHHHHHHHH
Confidence 000 0 0000112236899999999 99999999987654
No 374
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.06 E-value=1.2e-11 Score=136.51 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=104.5
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-.+|+++|.+|+|||||+++|++........+++|.......+.+++...++++||||...+..... +.+..+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~-------~~~~~a 76 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA-------RGTQVT 76 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-------SSSBSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-------HHHccC
Confidence 4579999999999999999999876666677888888777777665556799999999754433221 122346
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHh--HHHHHHHHHhcccccccc
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQE--IYDGIRDTLHNLKDHIHK 333 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~--~~~~l~~~~~~l~~~i~~ 333 (654)
|.+++|+|+... .. ..+...+ .... ....|.++++||+|+..... ....+.+. ......
T Consensus 77 D~vILVVDa~dg--------~~-~qt~e~l-----~~~~-~~~vPiIVViNKiDl~~~~~~~v~~~l~~~----~~~~e~ 137 (537)
T 3izy_P 77 DIVILVVAADDG--------VM-KQTVESI-----QHAK-DAHVPIVLAINKCDKAEADPEKVKKELLAY----DVVCED 137 (537)
T ss_dssp SSCEEECBSSSC--------CC-HHHHHHH-----HHHH-TTTCCEEECCBSGGGTTTSCCSSSSHHHHT----TSCCCC
T ss_pred CEEEEEEECCCC--------cc-HHHHHHH-----HHHH-HcCCcEEEEEecccccccchHHHHHHHHhh----hhhHHh
Confidence 788899988731 11 1111111 1111 24679999999999875321 11111111 000000
Q ss_pred CCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+....+++++||+++ .|+++|++.+..+++
T Consensus 138 ---------~~~~~~iv~vSAktG-~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 138 ---------YGGDVQAVHVSALTG-ENMMALAEATIALAE 167 (537)
T ss_dssp ---------SSSSEEECCCCSSSS-CSSHHHHHHHHHHHT
T ss_pred ---------cCCCceEEEEECCCC-CCchhHHHHHHHhhh
Confidence 111136889999999 999999999886654
No 375
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.06 E-value=6e-10 Score=116.70 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=91.8
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc--------------cE-EEEe
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR--------------KM-SVAD 230 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~--------------~~-~i~D 230 (654)
.++|+|++..|+.++|+|+||||||||+++|+|. ..|..|.|.+++.. .+ .+..
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q 112 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECS
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeC
Confidence 5789999999999999999999999999999994 56777888776520 01 1111
Q ss_pred cCcccccc--cccccchHHH-----HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 231 LPGLIEGA--HRNLGMGHQF-----LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 231 ~PGl~~~~--~~~~~l~~~~-----l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
.|.++... .++..+.... ....+++.-++..+++.. ..+.....+|++++++..++++|..+|.++
T Consensus 113 ~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-------~~~~~~~~LSGGqkQRVaIArAL~~~P~lL 185 (366)
T 3tui_C 113 HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------KHDSYPSNLSGGQKQRVAIARALASNPKVL 185 (366)
T ss_dssp SCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEE
T ss_pred CCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-------HhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 22222111 1111111110 011123333444444432 234556789999999999999999999999
Q ss_pred ee----cccCccchHhHHHHHHHHH
Q psy1086 304 LV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 304 vl----NK~D~~~~~~~~~~l~~~~ 324 (654)
++ +.+|.......++.+.+..
T Consensus 186 LlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 186 LCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred EEECCCccCCHHHHHHHHHHHHHHH
Confidence 99 7888877776666665543
No 376
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.06 E-value=4.7e-10 Score=117.43 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=91.6
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------cE-EEEecCccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------KM-SVADLPGLI 235 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------~~-~i~D~PGl~ 235 (654)
..+++|++..|+.++|+|+|||||||||++|+|. ..|..|.+.+++.. .+ .+.+-+.++
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 99 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-----------ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALF 99 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCC
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECCcCChhhCcEEEEecCcccC
Confidence 5689999999999999999999999999999994 56778888776521 11 111112222
Q ss_pred cc--ccccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee---
Q psy1086 236 EG--AHRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV--- 305 (654)
Q Consensus 236 ~~--~~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl--- 305 (654)
.. ..++..++.... ...++..-++..+++.+ ..+....++|++++++..++++|..+|.++++
T Consensus 100 ~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 100 QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11 111211111110 00122333333444432 23455678999999999999999999999999
Q ss_pred -cccCccchHhHHHHHHHHH
Q psy1086 306 -NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 306 -NK~D~~~~~~~~~~l~~~~ 324 (654)
+.+|........+.+.+..
T Consensus 173 ~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 173 FAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp TCCSSHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 7899877766666665543
No 377
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.05 E-value=1.2e-10 Score=117.75 Aligned_cols=120 Identities=14% Similarity=0.223 Sum_probs=79.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHH---
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE--- 253 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~--- 253 (654)
+|+++|.+|+|||||+++|++... .+.+++++|..+....+.+++ ..+.++||||+.++.... ..+.+.+.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~liDTpG~~~~~~~~----~~~~~~i~~~l 112 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-FTINIIDTPGLVEAGYVN----HQALELIKGFL 112 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-EEEEEEECCCSEETTEEC----HHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-eeEEEEECCCCCCcccch----HHHHHHHHHHH
Confidence 689999999999999999999765 567889999999888888876 589999999987654332 33344333
Q ss_pred ---HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCcc
Q psy1086 254 ---RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 311 (654)
Q Consensus 254 ---~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~ 311 (654)
.++++++|+++... .-. ..-....+++......-..+|.++|+||+|+.
T Consensus 113 ~~~~~~~il~V~~~d~~-------~~~--~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVY-------AVD--ELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTCEECEEEEEEESSCS-------CCC--HHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred hcCCCCEEEEEEcCCCC-------CCC--HHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 34566777555421 001 11112222232222222346899999999985
No 378
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.05 E-value=2.5e-10 Score=120.39 Aligned_cols=144 Identities=10% Similarity=0.089 Sum_probs=85.5
Q ss_pred cceeEEEEeCCCceEEEEecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCC-CCccchHHHHHHHHHHHH
Q psy1086 460 KPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLK-HPKRSCVETVLLLNKELE 538 (654)
Q Consensus 460 ~~~~~~v~~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~-~~~~~~~e~~~~~~~~l~ 538 (654)
......+.+++ ..+.+|||||+.+. +..+..|++.++++|+|||++++...+. +++..+++....|...+.
T Consensus 190 Gi~~~~~~~~~-~~l~i~Dt~Gq~~~-------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~ 261 (362)
T 1zcb_A 190 GIHEYDFEIKN-VPFKMVDVGGQRSE-------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 261 (362)
T ss_dssp SEEEEEEEETT-EEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH
T ss_pred ceEEEEeeeCC-eEEEEEeccchhhh-------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh
Confidence 34445566765 58999999997543 4445578899999999999995421111 112566777767766654
Q ss_pred HhhcccCCCCEEEEEeCCCccChH----------------HH-HHHHHHHHH-hhHhhhccCCCCCCccccccccceEEE
Q psy1086 539 LYKMNLLEKPIILLVNKMDVEGAQ----------------EI-YDGIRDTLH-NLKDHIHKYPEEFQPEKVIKFQSILPI 600 (654)
Q Consensus 539 ~~~~~~~~~p~iiv~NK~Dl~~~~----------------~v-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 600 (654)
.. ....+.|+|||+||+|+...+ .+ .++..+.+. .+.++... ...+...+++|
T Consensus 262 ~~-~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~--------~~~~~~~~~~t 332 (362)
T 1zcb_A 262 NN-RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD--------QQQRPLYHHFT 332 (362)
T ss_dssp TC-GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSS--------CC--CCEEEEC
T ss_pred cc-hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcc--------cCCCceEEEEE
Confidence 32 123578999999999986432 01 111111110 01111000 00123457899
Q ss_pred eeecCCCChHHHHHHHHHHHH
Q psy1086 601 SAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 601 SAktg~~gv~el~~~i~~~~~ 621 (654)
||++++ ||+++|+.+.+.+-
T Consensus 333 SA~d~~-nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 333 TAINTE-NIRLVFRDVKDTIL 352 (362)
T ss_dssp CTTCHH-HHHHHHHHHHHHHH
T ss_pred ecCCch-hHHHHHHHHHHHHH
Confidence 999999 99999999988764
No 379
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.05 E-value=6.4e-11 Score=133.48 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=98.1
Q ss_pred eecCcEEEEcCCCCcHHHHHHHHHccCCCCCC-------------------------------CCccccccceEEEEeCC
Q psy1086 174 KLIADIGLVGFPNAGKSTFLKAISRARPKIAS-------------------------------YPFTTIKPNVGVITFDD 222 (654)
Q Consensus 174 k~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~-------------------------------~~~tTl~p~~G~v~~~~ 222 (654)
+..-+|++||.+|+|||||+++|++....+.. .+++|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34558999999999999999999976444332 14667777777777765
Q ss_pred CccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCccee
Q psy1086 223 FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 302 (654)
Q Consensus 223 ~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~i 302 (654)
..+.++||||... +...+...+..+|++++|+|+....... ... +.....+...+...+..+|.+
T Consensus 245 -~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e~--~~~-----~~~qt~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 245 -ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFES--GFD-----LDGQTKEHMLLASSLGIHNLI 309 (611)
T ss_dssp -CEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHHT--TCC-----TTSHHHHHHHHHHTTTCCEEE
T ss_pred -ceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCcccc--cch-----hhhHHHHHHHHHHHcCCCeEE
Confidence 5899999999743 3334444556678899999986310000 000 000111222222333335688
Q ss_pred EeecccCccch-HhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHH
Q psy1086 303 LLVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDA 364 (654)
Q Consensus 303 lvlNK~D~~~~-~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L 364 (654)
+|+||+|+... ....+.+.+.+........ + .....+++++||+++ .|+.++
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g-~--------~~~~~~~i~vSA~tG-~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIG-F--------FEDNINWVPISGFSG-EGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHT-C--------CGGGCEEEECCTTTC-TTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhc-c--------cccCccEEeeecccC-CCcccc
Confidence 89999999762 1222222222221100000 0 000136899999999 999876
No 380
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.05 E-value=4.3e-10 Score=113.42 Aligned_cols=139 Identities=20% Similarity=0.180 Sum_probs=88.4
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEE------------------
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMS------------------ 227 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~------------------ 227 (654)
..+|+|+++.|+.++|+|+||||||||+++|+|. +.|..|.|.+++. .+.
T Consensus 22 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~-~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1b0u_A 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGAIIVNGQ-NINLVRDKDGQLKVADKNQLR 89 (262)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE-ECCEEECTTSSEEESCHHHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCE-EccccccccccccccChhhHH
Confidence 5689999999999999999999999999999994 5577788877652 110
Q ss_pred -----EEec---Ccccccc--cccccchH-HH-----HHHHHHHHHHHHhhcccCcccCCCCC-ccChHHHHHHHHHHHH
Q psy1086 228 -----VADL---PGLIEGA--HRNLGMGH-QF-----LRHVERTKLIAMIVDVNGFQLGLKHP-KRSCVETVLLLNKELE 290 (654)
Q Consensus 228 -----i~D~---PGl~~~~--~~~~~l~~-~~-----l~~i~~~~~il~vvd~~~~~l~~~~~-~~~~~~~l~~~~~el~ 290 (654)
+.-+ +.++... .++..++. .+ ....+++.-++..+++. +. .+.....+|++++++.
T Consensus 90 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~~~~~~~~~LSgGq~qRv 162 (262)
T 1b0u_A 90 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-------ERAQGKYPVHLSGGQQQRV 162 (262)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-------HHHHTSCGGGSCHHHHHHH
T ss_pred HHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-------chhhcCCcccCCHHHHHHH
Confidence 1111 2222110 11111100 00 00011222233333332 22 2455678999999999
Q ss_pred HHhHhhcCcceeEee----cccCccchHhHHHHHHHH
Q psy1086 291 LYKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 291 ~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~ 323 (654)
.+++++..+|.++++ +.+|........+.+.+.
T Consensus 163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999 789987776666666554
No 381
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.05 E-value=3.6e-10 Score=112.44 Aligned_cols=139 Identities=21% Similarity=0.262 Sum_probs=89.7
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------cE-EEEecCccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------KM-SVADLPGLI 235 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------~~-~i~D~PGl~ 235 (654)
..+++|+++. +.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+-|.+.
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~ 82 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCchhhCcEEEEcCCCccC
Confidence 6799999999 99999999999999999999994 56778888776520 00 111112222
Q ss_pred cc--ccccccchHH---HHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----c
Q psy1086 236 EG--AHRNLGMGHQ---FLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----N 306 (654)
Q Consensus 236 ~~--~~~~~~l~~~---~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----N 306 (654)
.. ..++..+... .....++...++..+++. +..+.....+|++++++..+++++..+|.++++ +
T Consensus 83 ~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts 155 (240)
T 2onk_A 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-------HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155 (240)
T ss_dssp TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-------TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS
T ss_pred CCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 11 0111111000 001112222333333332 233556688999999999999999999999999 7
Q ss_pred ccCccchHhHHHHHHHH
Q psy1086 307 KMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 307 K~D~~~~~~~~~~l~~~ 323 (654)
.+|........+.+.+.
T Consensus 156 ~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 156 AVDLKTKGVLMEELRFV 172 (240)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89987776666666554
No 382
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.04 E-value=7.2e-10 Score=112.73 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=89.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEE------------EEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMS------------VADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~------------i~D~PG 233 (654)
..+|+|++..|+.++|+|+||||||||+++|+|. +.|..|.+.+++. .+. +.-+|+
T Consensus 37 L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~-~~~~~~~~~~~~~~~i~~v~Q 104 (279)
T 2ihy_A 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNLFGK-MPGKVGYSAETVRQHIGFVSH 104 (279)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTB-CCC---CCHHHHHTTEEEECH
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEECCE-EcccccCCHHHHcCcEEEEEc
Confidence 5689999999999999999999999999999994 5577788877652 111 111111
Q ss_pred c----cc---cccccccchH----HHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhc
Q psy1086 234 L----IE---GAHRNLGMGH----QFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 297 (654)
Q Consensus 234 l----~~---~~~~~~~l~~----~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~ 297 (654)
. .. ...++..++. .+. ...+++..++..+++. +..+....++|++++++..+++++.
T Consensus 105 ~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 105 SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-------AKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp HHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-------GGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred CcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-------hHhcCChhhCCHHHHHHHHHHHHHh
Confidence 1 00 1111111100 000 0012222233333332 2235567889999999999999999
Q ss_pred CcceeEee----cccCccchHhHHHHHHHHH
Q psy1086 298 EKPIILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 298 ~~P~ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
.+|.++++ +.+|........+.+.+..
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 99999999 7899877776666665543
No 383
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.04 E-value=4.9e-10 Score=117.29 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=90.8
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE---------------EEEe
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM---------------SVAD 230 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~---------------~i~D 230 (654)
.++|+|++..|+.++|+|+|||||||||++|+|. ..|..|.+.+++. .+ .+.+
T Consensus 20 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~-~i~~~~~~~~~~~r~ig~vfQ 87 (359)
T 3fvq_A 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF-----------EQPDSGEISLSGK-TIFSKNTNLPVRERRLGYLVQ 87 (359)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-----------SCCSEEEEEETTE-EEESSSCBCCGGGSCCEEECT
T ss_pred EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCE-ECcccccccchhhCCEEEEeC
Confidence 4689999999999999999999999999999994 5677787777652 11 1111
Q ss_pred cCccccc--ccccccchHHH-----HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 231 LPGLIEG--AHRNLGMGHQF-----LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 231 ~PGl~~~--~~~~~~l~~~~-----l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
.+.++.. ..++..++... ....++..-++..+++.+ ..+....++|++++++..++++|..+|.++
T Consensus 88 ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-------~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 88 EGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-------LAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp TCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-------HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1222111 01111111000 011123333444444432 234566789999999999999999999999
Q ss_pred ee----cccCccchHhHHHHHHHHHh
Q psy1086 304 LV----NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 304 vl----NK~D~~~~~~~~~~l~~~~~ 325 (654)
++ +.+|........+.+.+...
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~ 186 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALR 186 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99 78888766666555555443
No 384
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.04 E-value=4.4e-10 Score=113.09 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=89.1
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE-----------EEEecC--
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM-----------SVADLP-- 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~-----------~i~D~P-- 232 (654)
..+|+|+++.|+.++|+|+||||||||+++|+|. +.|..|.+.+++. .+ .+.-+|
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~-~~~~~~~~~~~~~~i~~v~q~ 90 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYFENK-DITNKEPAELYHYGIVRTFQT 90 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE-ECTTCCHHHHHHHTEEECCCC
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCE-ECCCCCHHHHHhCCEEEEccC
Confidence 4678888888889999999999999999999994 5567788777542 10 012222
Q ss_pred -ccccc--ccccccchH-----HH-------------HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHH
Q psy1086 233 -GLIEG--AHRNLGMGH-----QF-------------LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELEL 291 (654)
Q Consensus 233 -Gl~~~--~~~~~~l~~-----~~-------------l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~ 291 (654)
.+... ..++..+.. .+ ....+++..++..+++. +..+.....+|++++++..
T Consensus 91 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 91 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-------HLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-------GGTTSBGGGSCHHHHHHHH
T ss_pred CccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-------hhhCCCchhCCHHHHHHHH
Confidence 22211 011111100 00 00112222233333332 2235567889999999999
Q ss_pred HhHhhcCcceeEee----cccCccchHhHHHHHHHHH
Q psy1086 292 YKMNLLEKPIILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 292 ~~~~l~~~P~ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
+++++..+|.++++ +.+|........+.+.+..
T Consensus 164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999 7899877777666665543
No 385
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.04 E-value=9.8e-10 Score=115.43 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=91.5
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------cE-EEEecCccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------KM-SVADLPGLI 235 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------~~-~i~D~PGl~ 235 (654)
..+++|++..|+.++|+|+|||||||||++|+|. ..|..|.+.+++.. .+ .+.+.+.++
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 87 (362)
T 2it1_A 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----------YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALY 87 (362)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCC
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHhHCcEEEEecCcccC
Confidence 4689999999999999999999999999999994 55777888776420 11 111112222
Q ss_pred cc--ccccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee---
Q psy1086 236 EG--AHRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV--- 305 (654)
Q Consensus 236 ~~--~~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl--- 305 (654)
.. ..++..++.... ...++..-++..+++. +..+....++|++++++..++++|..+|.++++
T Consensus 88 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 88 PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-------KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-------TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-------hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 11 111211111110 0012223333334443 233556688999999999999999999999999
Q ss_pred -cccCccchHhHHHHHHHHH
Q psy1086 306 -NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 306 -NK~D~~~~~~~~~~l~~~~ 324 (654)
+.+|........+.+.+..
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 161 LSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 7899877766666665543
No 386
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.03 E-value=4.1e-10 Score=113.75 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=88.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++|+|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.+.
T Consensus 27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~ 95 (266)
T 4g1u_C 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-----------LSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSE 95 (266)
T ss_dssp EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS-----------SCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCC
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCCHHHHhheEEEEecCCc
Confidence 5789999999999999999999999999999995 44566777665420 01 1111122
Q ss_pred cccc--ccccccchHHH---HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcC------ccee
Q psy1086 234 LIEG--AHRNLGMGHQF---LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE------KPII 302 (654)
Q Consensus 234 l~~~--~~~~~~l~~~~---l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~------~P~i 302 (654)
+... ..++..++... ....+++..++..+++. +..+.....+|++++++..+++++.. +|.+
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 96 LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-------ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-------TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-------hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 1110 00111010000 00112233333334433 23355667899999999999999998 9999
Q ss_pred Eee----cccCccchHhHHHHHHHHH
Q psy1086 303 LLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 303 lvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
+++ +.+|........+.+.+..
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHH
Confidence 998 7888877666666555543
No 387
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.03 E-value=6e-10 Score=116.51 Aligned_cols=141 Identities=19% Similarity=0.167 Sum_probs=92.7
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------cE-EEEecCcc
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------KM-SVADLPGL 234 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------~~-~i~D~PGl 234 (654)
-..+++|++..|+.++|+|+|||||||||++|+|. ..|..|.+.+++.. .+ .+.+-+.+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-----------HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECCEECCCCchhhCcEEEEecCccc
Confidence 35789999999999999999999999999999994 56788888876521 01 11111222
Q ss_pred ccc--ccccccchHHHH---HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----
Q psy1086 235 IEG--AHRNLGMGHQFL---RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV---- 305 (654)
Q Consensus 235 ~~~--~~~~~~l~~~~l---~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl---- 305 (654)
+.. ..++..++.... +. ++..-++..+++. +..+.....+|++++++..++++|..+|.++++
T Consensus 84 ~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~-------~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIE-------HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCT-------TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred CCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCc-------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 211 111211111110 01 2333334444433 233556678999999999999999999999999
Q ss_pred cccCccchHhHHHHHHHHH
Q psy1086 306 NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 306 NK~D~~~~~~~~~~l~~~~ 324 (654)
+.+|........+.+++..
T Consensus 156 s~LD~~~~~~l~~~l~~l~ 174 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLH 174 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 7899877766666665543
No 388
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.02 E-value=7.5e-10 Score=116.69 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=92.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------cE-EEEecCccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------KM-SVADLPGLI 235 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------~~-~i~D~PGl~ 235 (654)
.++|+|+++.|+.++|+|+|||||||||++|+|. ..|..|.+.+++.. .+ .+...+.++
T Consensus 19 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~ 87 (381)
T 3rlf_A 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALY 87 (381)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCC
T ss_pred EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-----------CCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCC
Confidence 4689999999999999999999999999999995 55777888775420 11 112222232
Q ss_pred cc--ccccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee---
Q psy1086 236 EG--AHRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV--- 305 (654)
Q Consensus 236 ~~--~~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl--- 305 (654)
.. ..++..++.... ...++..-++..+++.. ..+.....+|++++++..++++|..+|.++++
T Consensus 88 p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 21 112222221110 11123333444444432 23556678999999999999999999999999
Q ss_pred -cccCccchHhHHHHHHHHHh
Q psy1086 306 -NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 306 -NK~D~~~~~~~~~~l~~~~~ 325 (654)
+.+|........+.+.+..+
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 161 LSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp TTTSCHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHH
Confidence 78887766666666655443
No 389
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.02 E-value=2.8e-10 Score=119.77 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=84.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC------CCCCCC--------------------------CccccccceEEE---Ee-
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRAR------PKIASY--------------------------PFTTIKPNVGVI---TF- 220 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~------~~i~~~--------------------------~~tTl~p~~G~v---~~- 220 (654)
..|+|+|+||||||||+|+|++.. ..+..+ .+.+..|..+.+ ..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~ 154 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRT 154 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHH
Confidence 469999999999999999999731 111111 111112211111 00
Q ss_pred ---------CCCccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHH
Q psy1086 221 ---------DDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELEL 291 (654)
Q Consensus 221 ---------~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~ 291 (654)
.++..+.++||||+.... ....+.+|++++|+|.... .... .+
T Consensus 155 ~~~~~~~~~~~~~~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~------------~~~~----~i-- 206 (349)
T 2www_A 155 TNEAILLCEGAGYDIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGG------------DELQ----GI-- 206 (349)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCC--CH----------HHHHTTCSEEEEEECCC--------------------------
T ss_pred HHHHHHhhccCCCCEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcc------------hhHH----Hh--
Confidence 122468999999964211 1223456777777777521 0000 00
Q ss_pred HhHhhcCcceeEeecccCccchHhH---HHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHH
Q psy1086 292 YKMNLLEKPIILLVNKMDVEGAQEI---YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKI 368 (654)
Q Consensus 292 ~~~~l~~~P~ilvlNK~D~~~~~~~---~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i 368 (654)
...+...|.++|+||+|+...... ...+...+.... +.......+++++||+++ +|++++++.|
T Consensus 207 -~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~-----------~~a~~~~~~vi~iSA~~g-~Gi~~L~~~I 273 (349)
T 2www_A 207 -KRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLR-----------KRSQVWKPKVIRISARSG-EGISEMWDKM 273 (349)
T ss_dssp -----CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC----------------CCCEEEECCTTTC-TTHHHHHHHH
T ss_pred -HHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcC-----------ccccCCCceEEEEecCCC-CCHHHHHHHH
Confidence 012346789999999999754321 122222221100 000000136889999999 9999999999
Q ss_pred HHHHHH
Q psy1086 369 RSILDL 374 (654)
Q Consensus 369 ~~~l~~ 374 (654)
.+.+..
T Consensus 274 ~~~~~~ 279 (349)
T 2www_A 274 KDFQDL 279 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 390
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.01 E-value=2e-10 Score=123.94 Aligned_cols=161 Identities=22% Similarity=0.295 Sum_probs=96.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCC---CCCccccccceEEEEeC-----------------C-----CccEEEEec
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIA---SYPFTTIKPNVGVITFD-----------------D-----FRKMSVADL 231 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~---~~~~tTl~p~~G~v~~~-----------------~-----~~~~~i~D~ 231 (654)
.+|+++|.+|+|||||+++|+|...... ..+..|.........+. + ...+.++|+
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 4799999999999999999997643211 12344554433333221 0 146899999
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCcc
Q psy1086 232 PGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 311 (654)
Q Consensus 232 PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~ 311 (654)
||... +...+.+.+..+|.+++|+|+.... ......+.+. +...+..+|.++++||+|+.
T Consensus 91 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~-----~~~qt~e~l~--------~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 91 PGHEA-------LMTTMLAGASLMDGAILVIAANEPC-----PRPQTREHLM--------ALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSCS-----SCHHHHHHHH--------HHHHHTCCCEEEEEECGGGS
T ss_pred CChHH-------HHHHHHhhhhhCCEEEEEEECCCCC-----CChhHHHHHH--------HHHHcCCCcEEEEEECccCC
Confidence 99532 2233444455668888899986310 0111112111 11223346788999999998
Q ss_pred chHhH---HHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 312 GAQEI---YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 312 ~~~~~---~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
..++. .+++.+++... .....+++++||+++ .++++|++.|.+.++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~---------------~~~~~~~i~vSA~~g-~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 151 DKEKALENYRQIKEFIEGT---------------VAENAPIIPISALHG-ANIDVLVKAIEDFIP 199 (410)
T ss_dssp CHHHHHHHHHHHHHHHTTS---------------TTTTCCEEECBTTTT-BSHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHhc---------------CcCCCeEEEeeCCCC-CCHHHHHHHHHHhCC
Confidence 75432 23333333211 001136899999999 999999999887554
No 391
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.01 E-value=1.9e-09 Score=109.00 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=89.1
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc--------cEE-EEecC-ccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR--------KMS-VADLP-GLI 235 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~--------~~~-i~D~P-Gl~ 235 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+. +.+.| ..+
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~ 91 (266)
T 2yz2_A 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQF 91 (266)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGC
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEECchHHhhhhEEEEeccchhhc
Confidence 5789999999999999999999999999999994 56778888876521 111 11111 111
Q ss_pred cc--ccccccchHHH-HH---HHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----
Q psy1086 236 EG--AHRNLGMGHQF-LR---HVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV---- 305 (654)
Q Consensus 236 ~~--~~~~~~l~~~~-l~---~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl---- 305 (654)
.. ..++..+.... .. ..++...++..+++.. .+..+.....+|++++++..+++++..+|.++++
T Consensus 92 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 92 FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF-----DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166 (266)
T ss_dssp CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCH-----HHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCC-----cccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 10 00110000000 00 0112222233333320 0112455678999999999999999999999999
Q ss_pred cccCccchHhHHHHHHHHH
Q psy1086 306 NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 306 NK~D~~~~~~~~~~l~~~~ 324 (654)
+.+|........+.+.+..
T Consensus 167 s~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 167 VGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 7899877776666665543
No 392
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.01 E-value=4.9e-10 Score=112.02 Aligned_cols=139 Identities=16% Similarity=0.079 Sum_probs=89.4
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
..+++|++..|+.++|+|+||||||||+++|+|. +.|. |.+.+++.. .+ .+.+.|.
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 83 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----------TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQT 83 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCC
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCC-eEEEECCEECCcCCHHHHhceEEEECCCCc
Confidence 5789999999999999999999999999999994 5677 888876521 01 1222222
Q ss_pred cccc--ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcce-------eEe
Q psy1086 234 LIEG--AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPI-------ILL 304 (654)
Q Consensus 234 l~~~--~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~-------ilv 304 (654)
+... ..++..+........++...++..+++. +..+.....+|++++++..++.++..+|. +++
T Consensus 84 ~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-------DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-------GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-------hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 2211 0111111000000012222333333332 22245567899999999999999999999 999
Q ss_pred e----cccCccchHhHHHHHHHH
Q psy1086 305 V----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 305 l----NK~D~~~~~~~~~~l~~~ 323 (654)
+ +.+|........+.+.+.
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHH
Confidence 9 789987776666666554
No 393
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.00 E-value=9.6e-10 Score=115.40 Aligned_cols=141 Identities=19% Similarity=0.241 Sum_probs=91.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEE----------------EE
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMS----------------VA 229 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~----------------i~ 229 (654)
..+++|+++.|+.++|+|+|||||||||++|+|. ..|..|.+.+++. .+. +.
T Consensus 21 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~-~i~~~~~~~~~~~~r~ig~v~ 88 (353)
T 1oxx_K 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDR-LVASNGKLIVPPEDRKIGMVF 88 (353)
T ss_dssp EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-----------SCCSEEEEEETTE-EEEETTEESSCGGGSCEEEEE
T ss_pred EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCE-ECcccccccCChhhCCEEEEe
Confidence 4689999999999999999999999999999994 5567777776542 111 11
Q ss_pred ecCccccc--ccccccchHHH-----HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCccee
Q psy1086 230 DLPGLIEG--AHRNLGMGHQF-----LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPII 302 (654)
Q Consensus 230 D~PGl~~~--~~~~~~l~~~~-----l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~i 302 (654)
+-+.++.. ..++..++... ....++..-++..+++.+ ..+....++|++++++..++++|..+|.+
T Consensus 89 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 89 QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-------VLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp TTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-------GTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 11222111 01111111000 011123333444444432 23455678999999999999999999999
Q ss_pred Eee----cccCccchHhHHHHHHHHHh
Q psy1086 303 LLV----NKMDVEGAQEIYDGIRDTLH 325 (654)
Q Consensus 303 lvl----NK~D~~~~~~~~~~l~~~~~ 325 (654)
+++ +.+|........+.+.+...
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQS 188 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 999 88998877777766665543
No 394
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.00 E-value=7.4e-10 Score=110.27 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=87.0
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------------cE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------------KM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------------~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|
T Consensus 22 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 90 (240)
T 1ji0_A 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-----------VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGR 90 (240)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSC
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCCHHHHHhCCEEEEecCC
Confidence 5789999999999999999999999999999994 55667777765410 01 111112
Q ss_pred ccccc--ccccccchH----HHHHHHHHHHHHHHhhc-ccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 233 GLIEG--AHRNLGMGH----QFLRHVERTKLIAMIVD-VNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 233 Gl~~~--~~~~~~l~~----~~l~~i~~~~~il~vvd-~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
.++.. ..++..+.. ......++.+.++..++ +. +..+.....+|++++++..+++++..+|.++++
T Consensus 91 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-------~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 91 RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-------ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-------TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 22221 011111100 00000112222222221 22 112344567999999999999999999999999
Q ss_pred ----cccCccchHhHHHHHHHH
Q psy1086 306 ----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 306 ----NK~D~~~~~~~~~~l~~~ 323 (654)
+.+|........+.+.+.
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHH
Confidence 788987776666666554
No 395
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.00 E-value=9e-10 Score=126.17 Aligned_cols=173 Identities=18% Similarity=0.183 Sum_probs=98.1
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCC-CCCccccccce--------EEEE---------------------------
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIA-SYPFTTIKPNV--------GVIT--------------------------- 219 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~-~~~~tTl~p~~--------G~v~--------------------------- 219 (654)
..+|+++|.+|+|||||+|+|+|....+. ..|.| ..+.. ..+.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T-~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT-AVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT-CCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc-cceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 34799999999999999999999865443 34444 11100 0111
Q ss_pred -------------------eCCC---ccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccC
Q psy1086 220 -------------------FDDF---RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRS 277 (654)
Q Consensus 220 -------------------~~~~---~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~ 277 (654)
++.. ..+.++||||+..... ........+..+|++++|+|++.. .
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~---------~ 214 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQP---------C 214 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTST---------T
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCc---------c
Confidence 1100 2589999999865321 234455677788999999998631 1
Q ss_pred hHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH----h---HHH----HHHHHHh-ccccccccCCCccchhhhcc
Q psy1086 278 CVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ----E---IYD----GIRDTLH-NLKDHIHKYPEEFQPEKVIK 345 (654)
Q Consensus 278 ~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~----~---~~~----~l~~~~~-~l~~~i~~~~~~~~~~~~~~ 345 (654)
...+...+... + .. ...|.++|+||+|+.... + .++ .+.+.+. .+.......... ..
T Consensus 215 s~~e~~~l~~~---l-~~-~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~------~~ 283 (695)
T 2j69_A 215 TLGERRYLENY---I-KG-RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQN------IY 283 (695)
T ss_dssp CHHHHHHHHHH---T-TT-SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCB------CG
T ss_pred chhHHHHHHHH---H-Hh-hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccc------cC
Confidence 11222212111 1 11 367899999999986542 0 111 1211111 011110000000 01
Q ss_pred cceEEEeecc--------------cCccchHHHHHHHHHHHHH
Q psy1086 346 FQSILPISAK--------------TNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 346 ~~~v~~iSA~--------------~~~~~i~~L~~~i~~~l~~ 374 (654)
...++++||+ ++ .|++++.+.+.+.+..
T Consensus 284 ~~~v~~vSAk~al~~~~~~~~~~~~~-~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 284 DERVFELSSIQALRRRLKNPQADLDG-TGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GGTEEECCHHHHHHHHHHCTTCCCTT-SSHHHHHHHHHHHHHH
T ss_pred CCcEEEEeChHHHHhhccCchhhhhc-cCHHHHHHHHHHHHHH
Confidence 1368999999 99 9999999988876543
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=3.5e-11 Score=126.05 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=24.9
Q ss_pred EEEEEeecCcEEEEcCCCCcHHHHHHHHHcc
Q psy1086 169 VRLELKLIADIGLVGFPNAGKSTFLKAISRA 199 (654)
Q Consensus 169 i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~ 199 (654)
+++++..+..|+|+|+||||||||+++|++.
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444455557999999999999999999853
No 397
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.99 E-value=1.6e-09 Score=114.45 Aligned_cols=138 Identities=18% Similarity=0.205 Sum_probs=90.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEe------cC-------
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVAD------LP------- 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D------~P------- 232 (654)
..+++|++..|+.++|+|+|||||||||++|+|. ..|..|.+.+++. .+ .+ .|
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~-~~--~~~~~~~~~~~~~r~ig 84 (372)
T 1g29_1 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----------EEPSRGQIYIGDK-LV--ADPEKGIFVPPKDRDIA 84 (372)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTE-EE--EEGGGTEECCGGGSSEE
T ss_pred EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-----------CCCCccEEEECCE-EC--ccccccccCCHhHCCEE
Confidence 4689999999999999999999999999999994 5677888877652 22 12 11
Q ss_pred ------ccccc--ccccccchHHHH-----HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCc
Q psy1086 233 ------GLIEG--AHRNLGMGHQFL-----RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEK 299 (654)
Q Consensus 233 ------Gl~~~--~~~~~~l~~~~l-----~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~ 299 (654)
.++.. ..++..++.... ...++..-++..+++.+ ..+....++|++++++..++++|..+
T Consensus 85 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-------LLNRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-------GTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-------HhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 11111 011111111110 00122333344444432 23455678999999999999999999
Q ss_pred ceeEee----cccCccchHhHHHHHHHHH
Q psy1086 300 PIILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 300 P~ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
|.++++ +.+|........+.+.+..
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 186 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence 999999 7899877666666665543
No 398
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.99 E-value=1.3e-09 Score=114.34 Aligned_cols=141 Identities=20% Similarity=0.164 Sum_probs=90.3
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------cE-EEEecCccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------KM-SVADLPGLI 235 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------~~-~i~D~PGl~ 235 (654)
..+++|+++.|+.++|+|+|||||||||++|+|. ..|..|.+.+++.. .+ .+.+-+.++
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 87 (359)
T 2yyz_A 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-----------YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALY 87 (359)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCC
T ss_pred EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-----------CCCCccEEEECCEECCCCChhhCcEEEEecCcccC
Confidence 4689999999999999999999999999999995 45677777765410 11 111112222
Q ss_pred cc--ccccccchHHH---H--HHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee---
Q psy1086 236 EG--AHRNLGMGHQF---L--RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV--- 305 (654)
Q Consensus 236 ~~--~~~~~~l~~~~---l--~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl--- 305 (654)
.. ..++..++... . ...++..-++..+++.+ ..+....++|++++++..+++++..+|.++++
T Consensus 88 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 88 PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 11 11111111000 0 00122333444444432 22455678999999999999999999999999
Q ss_pred -cccCccchHhHHHHHHHHH
Q psy1086 306 -NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 306 -NK~D~~~~~~~~~~l~~~~ 324 (654)
+.+|........+.+.+..
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~ 180 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQ 180 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 7899877766666665543
No 399
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.98 E-value=4.4e-10 Score=114.06 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=77.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHH---
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVE--- 253 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~--- 253 (654)
+|+++|.+|+|||||+|+|++... .+.+++.+|..+....+...+ ..+.++||||+.++.... ..+++.+.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~iiDTpG~~~~~~~~----~~~~~~i~~~~ 115 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-FTLNIIDTPGLIEGGYIN----DMALNIIKSFL 115 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-EEEEEEECCCSEETTEEC----HHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC-eEEEEEECCCCCCCccch----HHHHHHHHHHh
Confidence 689999999999999999998764 456778888888777776655 579999999987654322 22333332
Q ss_pred ---HHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch
Q psy1086 254 ---RTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 313 (654)
Q Consensus 254 ---~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~ 313 (654)
.++++++|+|++.. .-.. ... .....+......-...|.++|+||+|+...
T Consensus 116 ~~~~~d~il~v~~~d~~-------~~~~-~~~-~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-------RVDN-LDK-LVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-------CCCH-HHH-HHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-------cCCH-HHH-HHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 35667777665421 0111 111 112222221111122689999999998654
No 400
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.98 E-value=1.7e-09 Score=108.93 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=85.0
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccE-------EEE-ecCccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM-------SVA-DLPGLIEG 237 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~-------~i~-D~PGl~~~ 237 (654)
..+++|++. |+.++|+|+||||||||+++|+|. . |..|.+.+++. .+ .+. -+|+....
T Consensus 21 l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~-~~~~~~~~~~i~~~v~Q~~~l 86 (263)
T 2pjz_A 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGM-EVRKIRNYIRYSTNLPEAYEI 86 (263)
T ss_dssp EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTE-EGGGCSCCTTEEECCGGGSCT
T ss_pred EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCE-ECcchHHhhheEEEeCCCCcc
Confidence 578999999 999999999999999999999993 6 88899988752 11 122 22221111
Q ss_pred ccccccchHHHH--HH-----HHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----c
Q psy1086 238 AHRNLGMGHQFL--RH-----VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----N 306 (654)
Q Consensus 238 ~~~~~~l~~~~l--~~-----i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----N 306 (654)
......... .. .++...++..+++. .+..+.+...+|++++++..+++++..+|.++++ +
T Consensus 87 ---~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 87 ---GVTVNDIVYLYEELKGLDRDLFLEMLKALKLG------EEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp ---TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCC------GGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred ---CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCC------hhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 101111110 00 11122222222222 0223556788999999999999999999999999 7
Q ss_pred ccCccchHhHHHHH
Q psy1086 307 KMDVEGAQEIYDGI 320 (654)
Q Consensus 307 K~D~~~~~~~~~~l 320 (654)
.+|.....+..+.+
T Consensus 158 ~LD~~~~~~l~~~L 171 (263)
T 2pjz_A 158 NVDAARRHVISRYI 171 (263)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 88876655554444
No 401
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.98 E-value=1.1e-10 Score=129.22 Aligned_cols=126 Identities=21% Similarity=0.299 Sum_probs=81.7
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCC----------------CC------CCccccccceEEEEeCCCccEEEEecCc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKI----------------AS------YPFTTIKPNVGVITFDDFRKMSVADLPG 233 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i----------------~~------~~~tTl~p~~G~v~~~~~~~~~i~D~PG 233 (654)
...|+|+|.+|||||||+++|+.....+ .+ .++.|.......+.+.+ ..+.++||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD-YLINLLDTPG 91 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-EEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-EEEEEEECCC
Confidence 4579999999999999999996321111 11 24556777777788776 5799999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch
Q psy1086 234 LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 313 (654)
Q Consensus 234 l~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~ 313 (654)
..++ .....+.+..+|.+++|+|+... ....+...+ .. .. ....|.++++||+|+...
T Consensus 92 ~~df-------~~~~~~~l~~aD~allVvDa~~g---------~~~~t~~~~-~~----~~-~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADF-------TEDTYRTLTAVDSALMVIDAAKG---------VEPRTIKLM-EV----CR-LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTC-------CHHHHHGGGGCSEEEEEEETTTC---------SCHHHHHHH-HH----HH-TTTCCEEEEEECTTSCCS
T ss_pred chhH-------HHHHHHHHHhCCEEEEEEeCCCC---------CCHHHHHHH-HH----HH-HcCCCEEEEEeCCCCccc
Confidence 7543 33456666778899999998741 111222111 11 11 246899999999999754
Q ss_pred H--hHHHHHHHHH
Q psy1086 314 Q--EIYDGIRDTL 324 (654)
Q Consensus 314 ~--~~~~~l~~~~ 324 (654)
. ...+++.+.+
T Consensus 150 ~~~~~l~ei~~~l 162 (528)
T 3tr5_A 150 PSIELLDEIESIL 162 (528)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh
Confidence 2 3344444443
No 402
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.98 E-value=1.2e-09 Score=109.36 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=83.6
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------------cE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------------KM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------------~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|.. ...|..|.+.+++.. .+ .+.+.|
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~---------~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP---------EYTVERGEILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCT---------TCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---------CCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 56899999999999999999999999999999931 145778888876521 00 111222
Q ss_pred ccccccc--ccccchHHHH--------HHHHHHHHHHHhhcccCcccCCCCCccChHHH-HHHHHHHHHHHhHhhcCcce
Q psy1086 233 GLIEGAH--RNLGMGHQFL--------RHVERTKLIAMIVDVNGFQLGLKHPKRSCVET-VLLLNKELELYKMNLLEKPI 301 (654)
Q Consensus 233 Gl~~~~~--~~~~l~~~~l--------~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~-l~~~~~el~~~~~~l~~~P~ 301 (654)
.++.... ++..+..... ...++...++..+++. .+..+..... +|++++++..+++++..+|.
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD------ESYLSRYLNEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC------GGGGGSBTTCC----HHHHHHHHHHHHHCCS
T ss_pred ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC------hhHhcCCcccCCCHHHHHHHHHHHHHHcCCC
Confidence 2221100 1111110000 0011222222223331 0112344566 99999999999999999999
Q ss_pred eEee----cccCccchHhHHHHHHHH
Q psy1086 302 ILLV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 302 ilvl----NK~D~~~~~~~~~~l~~~ 323 (654)
++++ +.+|........+.+.+.
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAM 189 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999 788887766666655544
No 403
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.97 E-value=6e-10 Score=118.09 Aligned_cols=149 Identities=9% Similarity=0.103 Sum_probs=96.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKL 257 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~ 257 (654)
+|+++|.+|+|||||+++|+. ...|.......+.+.+ ..+.++||||..+ +.......+..+|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~-~~i~iiDtPGh~~-------f~~~~~~~~~~aD~ 86 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG-RNMVFVDAHSYPK-------TLKSLITALNISDI 86 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS-SEEEEEECTTTTT-------CHHHHHHHHHTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC-eEEEEEECCChHH-------HHHHHHHHHHHCCE
Confidence 799999999999999999982 2345555555555555 4799999999743 33445566677888
Q ss_pred HHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcce-eEeec-ccCccchHhHH---HHHHHHHhccccccc
Q psy1086 258 IAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPI-ILLVN-KMDVEGAQEIY---DGIRDTLHNLKDHIH 332 (654)
Q Consensus 258 il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~-ilvlN-K~D~~~~~~~~---~~l~~~~~~l~~~i~ 332 (654)
+++|+| ... ..... .+...+.. ....|. ++++| |+|+ ..+... +++.+.+...
T Consensus 87 ailVvd-~~g----------~~~qt----~e~~~~~~-~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~----- 144 (370)
T 2elf_A 87 AVLCIP-PQG----------LDAHT----GECIIALD-LLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT----- 144 (370)
T ss_dssp EEEEEC-TTC----------CCHHH----HHHHHHHH-HTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS-----
T ss_pred EEEEEc-CCC----------CcHHH----HHHHHHHH-HcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc-----
Confidence 888988 521 00111 11111122 245677 88888 9999 543211 2233322211
Q ss_pred cCCCccchhhhcccceEEE--eeccc---CccchHHHHHHHHHHHHHh
Q psy1086 333 KYPEEFQPEKVIKFQSILP--ISAKT---NSTDVNDAKLKIRSILDLL 375 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~--iSA~~---~~~~i~~L~~~i~~~l~~~ 375 (654)
. ....++++ +||++ + .|+++|++.|.+.++..
T Consensus 145 --~--------~~~~~ii~~~~SA~~~~~g-~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 145 --V--------LQDWECISLNTNKSAKNPF-EGVDELKARINEVAEKI 181 (370)
T ss_dssp --T--------TTTCEEEECCCCTTSSSTT-TTHHHHHHHHHHHHHHH
T ss_pred --C--------CCceEEEecccccccCcCC-CCHHHHHHHHHhhcccc
Confidence 0 01136899 99999 9 99999999998877654
No 404
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.97 E-value=2.1e-10 Score=115.40 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred HHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccC
Q psy1086 255 TKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334 (654)
Q Consensus 255 ~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~ 334 (654)
++++++|+|++.. ....++.+.....++..+.. ....|.++|+||+|+...... +...++....
T Consensus 163 ad~vilV~D~t~~-------~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~------- 226 (255)
T 3c5h_A 163 VDGFLLGIDVSRG-------MNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERYI-RDAHTFALSK------- 226 (255)
T ss_dssp CCEEEEEEECBC-----------CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHHH-HHHHHHHHTS-------
T ss_pred CCEEEEEEECCCC-------chhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHHH-HHHHHHHHhc-------
Confidence 6788888888631 00234444433333333211 246899999999999754432 3333222210
Q ss_pred CCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 335 PEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 335 ~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.+ ..++.+||+++ .|++++++.+.+.+
T Consensus 227 ---------~~-~~~~e~SAk~g-~gv~elf~~l~~~l 253 (255)
T 3c5h_A 227 ---------KN-LQVVETSARSN-VNVDLAFSTLVQLI 253 (255)
T ss_dssp ---------SS-CCEEECBTTTT-BSHHHHHHHHHHHH
T ss_pred ---------CC-CeEEEEECCCC-CCHHHHHHHHHHHh
Confidence 01 25889999999 99999999987654
No 405
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.96 E-value=2.9e-10 Score=122.47 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=89.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCC---CCCccccccceEEEEe---------------C--C-----CccEEEEec
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIA---SYPFTTIKPNVGVITF---------------D--D-----FRKMSVADL 231 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~---~~~~tTl~p~~G~v~~---------------~--~-----~~~~~i~D~ 231 (654)
-+|+++|..++|||||+++|+|...... ..+..|.........+ + + ...+.++|+
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 88 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDS 88 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEEC
Confidence 4789999999999999999997643211 1233455443332222 1 0 146899999
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCcc
Q psy1086 232 PGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 311 (654)
Q Consensus 232 PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~ 311 (654)
||... +...+.+.+..+|.+++|+|+.... ......+.+. +...+..+|.++++||+|+.
T Consensus 89 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~-----~~~qt~e~l~--------~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 89 PGHET-------LMATMLSGASLMDGAILVIAANEPC-----PQPQTKEHLM--------ALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp SSHHH-------HHHHHHTTCSCCSEEEEEEETTSCS-----SCHHHHHHHH--------HHHHTTCCCEEEEEECTTSS
T ss_pred CCHHH-------HHHHHHHhHhhCCEEEEEEECCCCC-----CCchhHHHHH--------HHHHcCCCeEEEEEEccCCC
Confidence 99532 2222333334457888888886310 0111112111 11223346888999999997
Q ss_pred chHh---HHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 312 GAQE---IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 312 ~~~~---~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
..++ ..+++.+++.... ....+++++||+++ .++++|++.|.+.++
T Consensus 149 ~~~~~~~~~~~i~~~l~~~~---------------~~~~~~i~vSA~~g-~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 149 DEKQAEENYEQIKEFVKGTI---------------AENAPIIPISAHHE-ANIDVLLKAIQDFIP 197 (408)
T ss_dssp CTTTTTTHHHHHHHHHTTST---------------TTTCCEEEC-------CHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhhcC---------------CCCCeEEEeeCCCC-CCHHHHHHHHHHhCC
Confidence 6543 3344444433210 00136899999999 999999999887554
No 406
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.95 E-value=7.8e-10 Score=116.63 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=87.7
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc---------cE-EEEecCccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR---------KM-SVADLPGLI 235 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~---------~~-~i~D~PGl~ 235 (654)
..+++|+++.|+.++|+|+|||||||||++|+|. ..|..|.+.+++.. .+ .+.+.+.++
T Consensus 27 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 95 (372)
T 1v43_A 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVW 95 (372)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGGTEEEEEC-----
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCceEEEECCEECCCCChhhCcEEEEecCcccC
Confidence 4689999999999999999999999999999995 45666666665410 01 111112222
Q ss_pred cc--ccccccchHHH-----HHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee---
Q psy1086 236 EG--AHRNLGMGHQF-----LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV--- 305 (654)
Q Consensus 236 ~~--~~~~~~l~~~~-----l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl--- 305 (654)
.. ..++..++... ....++..-++..+++.+ ..+....++|++++++..++++|..+|.++++
T Consensus 96 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 96 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp -CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 11 11111111000 011122333444444432 22445578999999999999999999999999
Q ss_pred -cccCccchHhHHHHHHHHH
Q psy1086 306 -NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 306 -NK~D~~~~~~~~~~l~~~~ 324 (654)
+.+|........+.+.+..
T Consensus 169 ~s~LD~~~r~~l~~~l~~l~ 188 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKKLQ 188 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHH
Confidence 7889877766666665543
No 407
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.94 E-value=1.3e-09 Score=107.70 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=81.8
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccc-ccccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG-AHRNLGM 244 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~-~~~~~~l 244 (654)
..+++|++..|+.++|+|+||||||||+++|+|. +.|..|.+.+++. -..+.+.|.+... ..++..+
T Consensus 24 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~-i~~v~q~~~~~~~tv~enl~~ 91 (229)
T 2pze_A 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR-ISFCSQFSWIMPGTIKENIIF 91 (229)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEECSC-EEEECSSCCCCSBCHHHHHHT
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEECCE-EEEEecCCcccCCCHHHHhhc
Confidence 5789999999999999999999999999999994 6688899988763 1223333433321 1111111
Q ss_pred h----H-HHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchH
Q psy1086 245 G----H-QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQ 314 (654)
Q Consensus 245 ~----~-~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~ 314 (654)
+ . .....++...+ ...++.... ............+|++++++..+++++..+|.++++ +.+|.....
T Consensus 92 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~--~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~ 167 (229)
T 2pze_A 92 GVSYDEYRYRSVIKACQL-EEDISKFAE--KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167 (229)
T ss_dssp TSCCCHHHHHHHHHHTTC-HHHHTTSTT--GGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHH
T ss_pred cCCcChHHHHHHHHHhCc-HHHHHhCcc--cccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHH
Confidence 1 0 00011111100 011111000 000011223468999999999999999999999998 677765443
No 408
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.93 E-value=1.6e-09 Score=109.73 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=85.7
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
..+|+|++..|+.++|+|+||||||||+++|+|. +.|..|.|.+++.. .+ .+.+.|.
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~ 103 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL-----------YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL 103 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc
Confidence 5789999999999999999999999999999995 55677777775420 01 1122222
Q ss_pred cccc-ccccccch-------HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 234 LIEG-AHRNLGMG-------HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 234 l~~~-~~~~~~l~-------~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
++.. ..++..++ ...........+ ..+++.... .+..........+|++++++..++++|..+|.++++
T Consensus 104 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~--gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllL 180 (271)
T 2ixe_A 104 LFGRSFRENIAYGLTRTPTMEEITAVAMESGA-HDFISGFPQ--GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180 (271)
T ss_dssp CCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTC-HHHHHHSTT--GGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cccccHHHHHhhhcccCChHHHHHHHHHHHhH-HHHHHhhhc--chhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2211 01111110 111111111111 111111100 011222445678999999999999999999999999
Q ss_pred ----cccCccchHhHHHHHHH
Q psy1086 306 ----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 306 ----NK~D~~~~~~~~~~l~~ 322 (654)
+.+|........+.+.+
T Consensus 181 DEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 181 DNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp ESTTTTCCHHHHHHHHHHHHH
T ss_pred ECCccCCCHHHHHHHHHHHHH
Confidence 77887766655555543
No 409
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.92 E-value=7.3e-10 Score=120.31 Aligned_cols=156 Identities=21% Similarity=0.235 Sum_probs=86.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCC-----------CCCCcc----------------------ccccceEEEEeCCC
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKI-----------ASYPFT----------------------TIKPNVGVITFDDF 223 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i-----------~~~~~t----------------------Tl~p~~G~v~~~~~ 223 (654)
.+|+++|.+|+|||||+++|++....+ +.++.| |.......+...+
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~- 103 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK- 103 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS-
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC-
Confidence 379999999999999999998754221 112222 2222222333333
Q ss_pred ccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 224 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 224 ~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
..+.++||||... +...+...+..+|.+++|+|+... ..+ .+. +...+...+..+|.++
T Consensus 104 ~~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g--------~~~-qt~-----~~l~~~~~~~~~~iIv 162 (434)
T 1zun_B 104 RKFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYG--------VQT-QTR-----RHSYIASLLGIKHIVV 162 (434)
T ss_dssp EEEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTC--------SCH-HHH-----HHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCC--------CcH-HHH-----HHHHHHHHcCCCeEEE
Confidence 5799999999643 334455666778889999998731 011 111 1111222222346888
Q ss_pred eecccCccch-HhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHH
Q psy1086 304 LVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDA 364 (654)
Q Consensus 304 vlNK~D~~~~-~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L 364 (654)
++||+|+... .+.++.+.+.+..+ ...+... ....+++++||+++ .|++++
T Consensus 163 viNK~Dl~~~~~~~~~~i~~~~~~~---~~~~g~~------~~~~~~i~vSA~~g-~gi~~~ 214 (434)
T 1zun_B 163 AINKMDLNGFDERVFESIKADYLKF---AEGIAFK------PTTMAFVPMSALKG-DNVVNK 214 (434)
T ss_dssp EEECTTTTTSCHHHHHHHHHHHHHH---HHTTTCC------CSEEEEEECCTTTC-TTTSSC
T ss_pred EEEcCcCCcccHHHHHHHHHHHHHH---HHHhCCC------ccCceEEEEeccCC-CCcccc
Confidence 9999999752 22222222222111 0001000 01136899999999 998874
No 410
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.91 E-value=1.2e-09 Score=122.19 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=92.5
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCC---------C------CCccccccceEEEEeCC----CccEEEEecCcccc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIA---------S------YPFTTIKPNVGVITFDD----FRKMSVADLPGLIE 236 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~---------~------~~~tTl~p~~G~v~~~~----~~~~~i~D~PGl~~ 236 (654)
..+|+|+|.+|+|||||+++|......+. + ....|.......+.|.. ...+.++||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 34799999999999999999976422221 1 12334444445555542 13688999999754
Q ss_pred cccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH--
Q psy1086 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ-- 314 (654)
Q Consensus 237 ~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~-- 314 (654)
+.....+.+..+|.+++|+|+... ....+...+...+ ....|.++++||+|+....
T Consensus 84 -------F~~ev~~~l~~aD~aILVVDa~~g---------v~~qt~~~~~~~~------~~~ipiIvViNKiDl~~a~~~ 141 (599)
T 3cb4_D 84 -------FSYEVSRSLAACEGALLVVDAGQG---------VEAQTLANCYTAM------EMDLEVVPVLNKIDLPAADPE 141 (599)
T ss_dssp -------GHHHHHHHHHHCSEEEEEEETTTC---------CCTHHHHHHHHHH------HTTCEEEEEEECTTSTTCCHH
T ss_pred -------HHHHHHHHHHHCCEEEEEEECCCC---------CCHHHHHHHHHHH------HCCCCEEEeeeccCcccccHH
Confidence 334566777788999999998742 1112222221111 1467999999999997642
Q ss_pred hHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 315 EIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 315 ~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
+..+++.+.+.. ....++++||+++ .|++++++.+.+.++
T Consensus 142 ~v~~ei~~~lg~------------------~~~~vi~vSAktg-~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 142 RVAEEIEDIVGI------------------DATDAVRCSAKTG-VGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHTCC------------------CCTTCEEECTTTC-TTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCC------------------CcceEEEeecccC-CCchhHHHHHhhcCC
Confidence 222233222210 0024899999999 999999999887664
No 411
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.91 E-value=2.6e-09 Score=106.70 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=86.8
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
..+++|+++.|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|.
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~ 93 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-----------YIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV 93 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc
Confidence 5789999999999999999999999999999994 55677777765410 01 1222222
Q ss_pred cccc-ccccccch------HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee-
Q psy1086 234 LIEG-AHRNLGMG------HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV- 305 (654)
Q Consensus 234 l~~~-~~~~~~l~------~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl- 305 (654)
++.. ..++..++ ......++...+. ..++... ..+..........+|++++++..+++++..+|.++++
T Consensus 94 l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~--~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLD 170 (247)
T 2ff7_A 94 LLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELR--EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 170 (247)
T ss_dssp CTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTST--TGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCc--chhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2211 01111111 1111111111110 1111100 0011122334567999999999999999999999999
Q ss_pred ---cccCccchHhHHHHHHHH
Q psy1086 306 ---NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 306 ---NK~D~~~~~~~~~~l~~~ 323 (654)
+.+|........+.+.+.
T Consensus 171 EPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 171 EATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 788887776666666554
No 412
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.91 E-value=5.9e-10 Score=106.56 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=66.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
.+|+++|.+|||||||++.|++...... ..+..|..+. .+. ...+.++|+||....... +...+...+..++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~~-~~~-~~~~~l~Dt~G~~~~~~~---~~~~~~~~~~~~~ 120 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYD-GSGVTLVDFPGHVKLRYK---LSDYLKTRAKFVK 120 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC----------------CCC-CTTCSEEEETTCCBSSCC---HHHHHHHHGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCceee-eec-CCeEEEEECCCCchHHHH---HHHHHHhhcccCC
Confidence 4799999999999999999998653221 1111222211 112 247899999997543221 1122222233367
Q ss_pred HHHHhhccc-CcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchH
Q psy1086 257 LIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQ 314 (654)
Q Consensus 257 ~il~vvd~~-~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~ 314 (654)
.+++|+|++ +. ..+..+.....++..... .....|.++|+||+|+....
T Consensus 121 ~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 121 GLIFMVDSTVDP---------KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp EEEEEEETTCCH---------HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred EEEEEEECCCCc---------hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 888888886 21 122222222222221111 11368999999999997543
No 413
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.90 E-value=1.6e-09 Score=111.29 Aligned_cols=143 Identities=19% Similarity=0.223 Sum_probs=86.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++|+|+++.|+.++|||+||||||||+++|+|. ..|..|.|.+++.. .+ .+..-|.
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~ 138 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV 138 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCC
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEECCEEcccCCHHHHhcceEEEecCCc
Confidence 5789999999999999999999999999999994 56777888776520 11 1222233
Q ss_pred ccccc-cccccch------HHHHHHHHHHHHHHHhhccc-CcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 234 LIEGA-HRNLGMG------HQFLRHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 234 l~~~~-~~~~~l~------~~~l~~i~~~~~il~vvd~~-~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
++... .++..++ .+....++.+.+.-++.... ++ ..........+|++++++..+++++..+|.++++
T Consensus 139 lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl----~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlL 214 (306)
T 3nh6_A 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY----RTQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214 (306)
T ss_dssp CCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGG----GCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchh----hhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 32210 1111111 12222222222222221111 10 0011122246899999999999999999999999
Q ss_pred ----cccCccchHhHHHHHHHH
Q psy1086 306 ----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 306 ----NK~D~~~~~~~~~~l~~~ 323 (654)
+.+|........+.+.+.
T Consensus 215 DEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 215 DEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHH
Confidence 778877666655555544
No 414
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.90 E-value=6.9e-10 Score=117.21 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=65.0
Q ss_pred ccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 224 RKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 224 ~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
..+.++||||+.. .....+..+|++++|+|..... .. ..+...+...|.++
T Consensus 172 ~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~------~~-------------~~l~~~~~~~p~iv 222 (355)
T 3p32_A 172 FDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGD------QL-------------QGIKKGVLELADIV 222 (355)
T ss_dssp CCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTC------TT-------------TTCCTTSGGGCSEE
T ss_pred CCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCc------cH-------------HHHHHhHhhcCCEE
Confidence 4689999999642 1122235677788888865310 00 00111235579999
Q ss_pred eecccCccchHhHH---HHHHHHHhccccccccCCCccchhhhccc-ceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 304 LVNKMDVEGAQEIY---DGIRDTLHNLKDHIHKYPEEFQPEKVIKF-QSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 304 vlNK~D~~~~~~~~---~~l~~~~~~l~~~i~~~~~~~~~~~~~~~-~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
|+||+|+....... ..+.+.+..... ....+ .+++++||+++ +|++++++.+.+.+..
T Consensus 223 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~~------------~~~~~~~~vi~iSA~~g-~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 223 VVNKADGEHHKEARLAARELSAAIRLIYP------------REALWRPPVLTMSAVEG-RGLAELWDTVERHRQV 284 (355)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHHST------------TCCSCCCCEEEEBGGGT-BSHHHHHHHHHHHHHH
T ss_pred EEECCCCcChhHHHHHHHHHHHHHhhccc------------cccCCCCceEEEEcCCC-CCHHHHHHHHHHHHHH
Confidence 99999997543322 222222211100 00011 26899999999 9999999999887754
No 415
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.90 E-value=1.4e-09 Score=121.45 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=95.2
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCC---------C------CCccccccceEEEEeC--CC--ccEEEEecCcccc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIA---------S------YPFTTIKPNVGVITFD--DF--RKMSVADLPGLIE 236 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~---------~------~~~tTl~p~~G~v~~~--~~--~~~~i~D~PGl~~ 236 (654)
..+|+|+|.+|+|||||+++|......+. + ....|.......+.|. ++ ..+.++||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 45799999999999999999975321111 1 1223444444455553 11 3578999999765
Q ss_pred cccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhH
Q psy1086 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEI 316 (654)
Q Consensus 237 ~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~ 316 (654)
+ .....+.+..+|.+++|+|+... ....+...+...+ ....|.++++||+|+...+
T Consensus 86 F-------~~ev~r~l~~aD~aILVVDa~~g---------v~~qt~~~~~~a~------~~~ipiIvviNKiDl~~a~-- 141 (600)
T 2ywe_A 86 F-------SYEVSRALAACEGALLLIDASQG---------IEAQTVANFWKAV------EQDLVIIPVINKIDLPSAD-- 141 (600)
T ss_dssp G-------HHHHHHHHHTCSEEEEEEETTTB---------CCHHHHHHHHHHH------HTTCEEEEEEECTTSTTCC--
T ss_pred H-------HHHHHHHHHhCCEEEEEEECCCC---------ccHHHHHHHHHHH------HCCCCEEEEEeccCccccC--
Confidence 3 33456667778888999998742 1112222221111 1467899999999997643
Q ss_pred HHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 317 YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 317 ~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
.+...+.+..... + ....++++||+++ .|++++++.+.+.++.
T Consensus 142 ~~~v~~el~~~lg----~----------~~~~vi~vSAktg-~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 142 VDRVKKQIEEVLG----L----------DPEEAILASAKEG-IGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHHHHTSC----C----------CGGGCEECBTTTT-BSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhC----C----------CcccEEEEEeecC-CCchHHHHHHHHhccc
Confidence 1222222221100 0 0125899999999 9999999998876643
No 416
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.90 E-value=3.9e-10 Score=121.40 Aligned_cols=147 Identities=20% Similarity=0.279 Sum_probs=84.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc---CC---CCCC-----------CCccccccceEEEEeCCCccEEEEecCccccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRA---RP---KIAS-----------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 239 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~---~~---~i~~-----------~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~ 239 (654)
.+|+++|.+|+|||||+++|++. .- .... .+..|.......+...+ ..+.++||||..+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~~~iiDtpG~~~--- 87 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK-RHYSHVDCPGHAD--- 87 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS-CEEEEEECCCSGG---
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC-eEEEEEECCChHH---
Confidence 47999999999999999999873 10 0001 12233333222333333 5799999999753
Q ss_pred ccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcc-eeEeecccCccchHhHHH
Q psy1086 240 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYD 318 (654)
Q Consensus 240 ~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P-~ilvlNK~D~~~~~~~~~ 318 (654)
+...+...+..+|.+++|+|+... ..+ .+. +...+... ...| .++++||+|+....+..+
T Consensus 88 ----f~~~~~~~~~~aD~~ilVvda~~g--------~~~-qt~-----~~l~~~~~-~~ip~iivviNK~Dl~~~~~~~~ 148 (405)
T 2c78_A 88 ----YIKNMITGAAQMDGAILVVSAADG--------PMP-QTR-----EHILLARQ-VGVPYIVVFMNKVDMVDDPELLD 148 (405)
T ss_dssp ----GHHHHHHHHTTCSSEEEEEETTTC--------CCH-HHH-----HHHHHHHH-TTCCCEEEEEECGGGCCCHHHHH
T ss_pred ----HHHHHHHHHHHCCEEEEEEECCCC--------CcH-HHH-----HHHHHHHH-cCCCEEEEEEECccccCcHHHHH
Confidence 334455666778899999998631 011 111 11111222 4567 678899999975332222
Q ss_pred ----HHHHHHhccccccccCCCccchhhhcccceEEEeecccCccc
Q psy1086 319 ----GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD 360 (654)
Q Consensus 319 ----~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~ 360 (654)
++.+++.... +.. ...+++++||+++ .+
T Consensus 149 ~~~~~~~~~l~~~~-----~~~--------~~~~~i~~SA~~g-~~ 180 (405)
T 2c78_A 149 LVEMEVRDLLNQYE-----FPG--------DEVPVIRGSALLA-LE 180 (405)
T ss_dssp HHHHHHHHHHHHTT-----SCT--------TTSCEEECCHHHH-HH
T ss_pred HHHHHHHHHHHHhc-----ccc--------cCCCEEEccHHHh-hh
Confidence 2222322210 000 0126899999998 76
No 417
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.90 E-value=3.7e-10 Score=126.87 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=72.6
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCC-------------------------------CCCCccccccceEEEEeCCCc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKI-------------------------------ASYPFTTIKPNVGVITFDDFR 224 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i-------------------------------~~~~~tTl~p~~G~v~~~~~~ 224 (654)
..+|+++|.+|+|||||++.|++....+ ...+++|.......+.+.+ .
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~-~ 255 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK-K 255 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC-e
Confidence 3479999999999999999996431111 0134567766666666655 5
Q ss_pred cEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCccc--CCCCCccChHHHHHHHHHHHHHHhHhhcCcc-e
Q psy1086 225 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQL--GLKHPKRSCVETVLLLNKELELYKMNLLEKP-I 301 (654)
Q Consensus 225 ~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l--~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P-~ 301 (654)
.+.++||||...+... +...+..+|++++|+|+..... .+. ......+.+ .+... ...| .
T Consensus 256 ~i~iiDTPGh~~f~~~-------~~~~~~~aD~alLVVDa~~g~~e~gi~-~~~qt~e~l--------~~~~~-lgip~i 318 (592)
T 3mca_A 256 IYEIGDAPGHRDFISG-------MIAGASSADFAVLVVDSSQNNFERGFL-ENGQTREHA--------YLLRA-LGISEI 318 (592)
T ss_dssp ---CCEEESSSEEEEE-------CCC-------CCSEEEEEECCSSTTSC-SCSSHHHHH--------HHHHH-SSCCCE
T ss_pred EEEEEECCChHHHHHH-------HHHHHhhCCEEEEEEECCCCccccccc-cchHHHHHH--------HHHHH-cCCCeE
Confidence 7999999998654332 2234566899999999973100 000 011222211 11222 3455 7
Q ss_pred eEeecccCccch-HhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchH
Q psy1086 302 ILLVNKMDVEGA-QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVN 362 (654)
Q Consensus 302 ilvlNK~D~~~~-~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~ 362 (654)
++++||+|+... ...++.+.+.+..... ..+. +.+ ...+++++||+++ .|+.
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~el~~~l~--~~~g--~~~----~~~~ii~iSA~~G-~gI~ 371 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNIVSDFLI--KMVG--FKT----SNVHFVPISAISG-TNLI 371 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHT--TTSC--CCG----GGEEEEEECSSSC-SSSC
T ss_pred EEEEeccccccccHHHHHHHHHHHHHHHH--HhhC--CCc----cceEEEEEecccC-cccc
Confidence 889999999752 2223333222222110 0000 000 0126899999999 9997
No 418
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.90 E-value=4e-09 Score=106.62 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=84.6
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc------------cE-EEEecC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR------------KM-SVADLP 232 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~------------~~-~i~D~P 232 (654)
..+++|++..|+.++|+|+||||||||+++|+|..+ ..|..|.+.+++.. .+ .+.+.|
T Consensus 36 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~ 106 (267)
T 2zu0_C 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYP 106 (267)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSC
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCc
Confidence 568999999999999999999999999999999410 24677888776521 01 122223
Q ss_pred ccccccc--ccccchH-HHH-----------HHHHHHHHHHHhhcccCcccCCCCCccChHH-HHHHHHHHHHHHhHhhc
Q psy1086 233 GLIEGAH--RNLGMGH-QFL-----------RHVERTKLIAMIVDVNGFQLGLKHPKRSCVE-TVLLLNKELELYKMNLL 297 (654)
Q Consensus 233 Gl~~~~~--~~~~l~~-~~l-----------~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~-~l~~~~~el~~~~~~l~ 297 (654)
.++.... ++..+.. ... ...+++..++..+++.. +..+.... .+|++++++..+++++.
T Consensus 107 ~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 107 VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE------DLLTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT------TTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh------hHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 2221110 0000000 000 00112222222233210 11234444 59999999999999999
Q ss_pred CcceeEee----cccCccchHhHHHHHH
Q psy1086 298 EKPIILLV----NKMDVEGAQEIYDGIR 321 (654)
Q Consensus 298 ~~P~ilvl----NK~D~~~~~~~~~~l~ 321 (654)
.+|.++++ +.+|........+.+.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~ 208 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVN 208 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 99999999 7888766655554443
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.88 E-value=9.1e-10 Score=109.38 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=82.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccc-ccccccc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG-AHRNLGM 244 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~-~~~~~~l 244 (654)
.++++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++... .+.+.|.+... ..++..+
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~i~-~v~Q~~~~~~~tv~enl~~ 88 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGSVA-YVPQQAWIQNDSLRENILF 88 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSCEE-EECSSCCCCSEEHHHHHHT
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEE-EEcCCCcCCCcCHHHHhhC
Confidence 5789999999999999999999999999999994 668889998876311 22222322110 0011111
Q ss_pred h-----HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHh
Q psy1086 245 G-----HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQE 315 (654)
Q Consensus 245 ~-----~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~ 315 (654)
. ....+..+...+ ...++.... ............+|++++++..+++++..+|.++++ +.+|......
T Consensus 89 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~--~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 165 (237)
T 2cbz_A 89 GCQLEEPYYRSVIQACAL-LPDLEILPS--GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165 (237)
T ss_dssp TSCCCTTHHHHHHHHTTC-HHHHTTSTT--GGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred ccccCHHHHHHHHHHHhh-HHHHHhccc--cccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 0 001111110000 001111000 000001234467999999999999999999999998 6777655444
Q ss_pred HHH
Q psy1086 316 IYD 318 (654)
Q Consensus 316 ~~~ 318 (654)
..+
T Consensus 166 i~~ 168 (237)
T 2cbz_A 166 IFE 168 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 420
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.88 E-value=9.5e-10 Score=109.74 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=84.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCC-----------ccE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF-----------RKM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~-----------~~~-~i~D~PG 233 (654)
.++++|+++.|+.++|+|+||||||||+++|+|..+ |..|.+.+++. ..+ .+.+.|.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----------p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 86 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----------PTAGEITIDGQPIDNISLENWRSQIGFVSQDSA 86 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----------CSBSCEEETTEESTTTSCSCCTTTCCEECCSSC
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----------CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCc
Confidence 578999999999999999999999999999999633 34444443320 001 1111222
Q ss_pred cccc-ccccccchHHHHHHHHHHHHHHHhhcccCccc----CCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee---
Q psy1086 234 LIEG-AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQL----GLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV--- 305 (654)
Q Consensus 234 l~~~-~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l----~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl--- 305 (654)
++.. ..++..++.......++...++..+.+..+.- .+..........+|++++++..+++++..+|.++++
T Consensus 87 l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP 166 (243)
T 1mv5_A 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166 (243)
T ss_dssp CCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred cccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 2111 11111111000000011111222222221100 001111233467999999999999999999999999
Q ss_pred -cccCccchHhHHHHHHHH
Q psy1086 306 -NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 306 -NK~D~~~~~~~~~~l~~~ 323 (654)
+.+|........+.+.+.
T Consensus 167 ts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 167 TASLDSESESMVQKALDSL 185 (243)
T ss_dssp SCSSCSSSCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHh
Confidence 889988877777666554
No 421
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.85 E-value=4e-10 Score=118.98 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCC
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARP 201 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~ 201 (654)
.+|++||.+|||||||+++|+|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 4799999999999999999999753
No 422
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.84 E-value=9e-10 Score=116.65 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRAR 200 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~ 200 (654)
+.|++||.+|||||||+++|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999964
No 423
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.83 E-value=6.5e-09 Score=118.56 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=75.4
Q ss_pred EEEeecCcEEEEcCCCCcHHHHHHHHHccCCCC------------CCC------CccccccceEEEEeCCCccEEEEecC
Q psy1086 171 LELKLIADIGLVGFPNAGKSTFLKAISRARPKI------------ASY------PFTTIKPNVGVITFDDFRKMSVADLP 232 (654)
Q Consensus 171 L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i------------~~~------~~tTl~p~~G~v~~~~~~~~~i~D~P 232 (654)
+.+..+..|+|+|.+|+|||||+++|++....+ .++ ...|..+....+.+.. ..+.++|||
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-~~~nliDTp 82 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAP 82 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC-EEEEEEeCC
Confidence 345567789999999999999999999543321 111 1335555555666654 478999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCcc
Q psy1086 233 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 311 (654)
Q Consensus 233 Gl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~ 311 (654)
|..+ +.....+.+..++.+++|+|.... -.+ .+ . ++...... ...|.++++||+|+.
T Consensus 83 G~~~-------f~~~~~~~l~~ad~~ilVvD~~~g--------~~~-qt-~----~~~~~~~~-~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 83 GYGD-------FVGEIRGALEAADAALVAVSAEAG--------VQV-GT-E----RAWTVAER-LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSGG-------GHHHHHHHHHHCSEEEEEEETTTC--------SCH-HH-H----HHHHHHHH-TTCCEEEEEECGGGC
T ss_pred Cccc-------hHHHHHHHHhhcCcEEEEEcCCcc--------cch-hH-H----HHHHHHHH-ccCCEEEEecCCchh
Confidence 9754 234456667777888888887531 011 11 1 11111111 468999999999986
No 424
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.81 E-value=1.3e-09 Score=118.87 Aligned_cols=159 Identities=20% Similarity=0.226 Sum_probs=87.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCC-------------------------C------CCccccccceEEEEeCCCcc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIA-------------------------S------YPFTTIKPNVGVITFDDFRK 225 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~-------------------------~------~~~tTl~p~~G~v~~~~~~~ 225 (654)
-+|+++|.+|+|||||+++|++....+. + ....|.......+...+ ..
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-~~ 86 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-YQ 86 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-EE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-ce
Confidence 3799999999999999999986411110 0 13345555555555554 57
Q ss_pred EEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHH-HHH--HHHHHHHHHhHhhcCcc-e
Q psy1086 226 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVE-TVL--LLNKELELYKMNLLEKP-I 301 (654)
Q Consensus 226 ~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~-~l~--~~~~el~~~~~~l~~~P-~ 301 (654)
+.++||||... +...+...+..+|.+++|+|+... ... .+. ....+...+... ...| .
T Consensus 87 ~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g----------~~~~sf~~~~qt~~~~~~~~~-~~v~~i 148 (458)
T 1f60_A 87 VTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVG----------EFEAGISKDGQTREHALLAFT-LGVRQL 148 (458)
T ss_dssp EEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHH----------HHHHHTCTTSHHHHHHHHHHH-TTCCEE
T ss_pred EEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcC----------ccccccCcchhHHHHHHHHHH-cCCCeE
Confidence 99999999542 333344445567888888888621 000 000 001111112222 3444 7
Q ss_pred eEeecccCccc-hHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHH
Q psy1086 302 ILLVNKMDVEG-AQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDA 364 (654)
Q Consensus 302 ilvlNK~D~~~-~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L 364 (654)
++++||+|+.. ..+.++.+.+.+..+.... .+. + ...+++++||+++ .++.++
T Consensus 149 ivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~-g~~----~----~~~~~i~vSA~~g-~nv~~~ 202 (458)
T 1f60_A 149 IVAVNKMDSVKWDESRFQEIVKETSNFIKKV-GYN----P----KTVPFVPISGWNG-DNMIEA 202 (458)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHH-TCC----G----GGCCEEECCTTTC-BTTTBC
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHHHHHc-CCC----c----cCceEEEeecccC-cCcccc
Confidence 88899999973 1222222222222110000 000 0 0126899999999 998754
No 425
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.81 E-value=3.7e-10 Score=123.56 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=95.1
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHH
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERT 255 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~ 255 (654)
-..|+++|.+|+|||||+++|.+........+..|.......+.+++ ..+.++||||...+.... .+.+..+
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~-~~i~~iDTPGhe~f~~~~-------~~~~~~a 75 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN-GMITFLDTPGHAAFTSMR-------ARGAQAT 75 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS-SCCCEECCCTTTCCTTSB-------CSSSBSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC-EEEEEEECCCcHHHHHHH-------HHHHhhC
Confidence 35799999999999999999987543333334455544443444444 479999999976543321 1223446
Q ss_pred HHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCC
Q psy1086 256 KLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP 335 (654)
Q Consensus 256 ~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~ 335 (654)
|.+++|+|+.... .....+.+. +.. ....|.++++||+|+..... +.+. ..+.. .
T Consensus 76 D~aILVVda~~g~------~~qT~e~l~--------~~~-~~~vPiIVviNKiDl~~~~~--~~v~---~~l~~-~---- 130 (501)
T 1zo1_I 76 DIVVLVVAADDGV------MPQTIEAIQ--------HAK-AAQVPVVVAVNKIDKPEADP--DRVK---NELSQ-Y---- 130 (501)
T ss_dssp SSEEEEEETTTBS------CTTTHHHHH--------HHH-HTTCCEEEEEECSSSSTTCC--CCTT---CCCCC-C----
T ss_pred CEEEEEeecccCc------cHHHHHHHH--------HHH-hcCceEEEEEEeccccccCH--HHHH---HHHHH-h----
Confidence 7888899886421 112222221 111 25679999999999975321 0000 00000 0
Q ss_pred CccchhhhcccceEEEeecccCccchHHHHHHHH
Q psy1086 336 EEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369 (654)
Q Consensus 336 ~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~ 369 (654)
...+..+....+++++||+++ .|+++|++.+.
T Consensus 131 -~~~~~~~~~~~~~v~vSAktG-~gI~eLle~I~ 162 (501)
T 1zo1_I 131 -GILPEEWGGESQFVHVSAKAG-TGIDELLDAIL 162 (501)
T ss_dssp -CCCTTCCSSSCEEEECCTTTC-TTCTTHHHHTT
T ss_pred -hhhHHHhCCCccEEEEeeeec-cCcchhhhhhh
Confidence 011111111237899999999 99999998875
No 426
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.80 E-value=3.9e-09 Score=102.99 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=67.2
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHH-
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER- 254 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~- 254 (654)
..+|+++|++|+|||||+++|++...... .++..|..+.. +. ...+.++|+||..... ..+...+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~~-~~-~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 79 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAAD-YD-GSGVTLVDFPGHVKLR-------YKLSDYLKTR 79 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETT-GG-GSSCEEEECCCCGGGT-------HHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEEE-ee-CceEEEEECCCcHHHH-------HHHHHHHHhc
Confidence 34799999999999999999998653221 01112222111 12 2468999999974322 122222333
Q ss_pred ---HHHHHHhhccc-CcccCCCCCccChHHHHHHHHHHHHHHhH--hhcCcceeEeecccCccchH
Q psy1086 255 ---TKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELYKM--NLLEKPIILLVNKMDVEGAQ 314 (654)
Q Consensus 255 ---~~~il~vvd~~-~~~l~~~~~~~~~~~~l~~~~~el~~~~~--~l~~~P~ilvlNK~D~~~~~ 314 (654)
++.+++|+|.. .. ..+........++..... .-...|.++|+||+|+....
T Consensus 80 ~~~~~~~i~v~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDP---------KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp GGGEEEEEEEEETTSCT---------TCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCh---------HHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 57788888886 21 111222222222222111 11468899999999997643
No 427
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.80 E-value=7.8e-10 Score=125.87 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=93.6
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCcccccc------------------------------------------
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP------------------------------------------ 213 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p------------------------------------------ 213 (654)
.++|++||.+|||||||+|+|+|......+...+|..|
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 45899999999999999999999753111111223222
Q ss_pred ---------ceEEEEeCCCccEEEEecCccccccccc------ccchHHHHHHH-HHHHHHHHhhcccCcccCCCCCccC
Q psy1086 214 ---------NVGVITFDDFRKMSVADLPGLIEGAHRN------LGMGHQFLRHV-ERTKLIAMIVDVNGFQLGLKHPKRS 277 (654)
Q Consensus 214 ---------~~G~v~~~~~~~~~i~D~PGl~~~~~~~------~~l~~~~l~~i-~~~~~il~vvd~~~~~l~~~~~~~~ 277 (654)
..-.+...+..+++++||||+......+ ..+.......+ .++|++++|+|++.. ...
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~-------~~~ 203 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-------LAN 203 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC-------SSS
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC-------cch
Confidence 1122333344468999999998633111 11222222222 355788888888631 111
Q ss_pred hHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccC
Q psy1086 278 CVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 357 (654)
Q Consensus 278 ~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~ 357 (654)
. ..+. +. ..+.. ...|.++|+||+|+.........+. .. .. ++ ...++..++++||.++
T Consensus 204 ~-d~l~-ll---~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il---~~--~~---~~------l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 204 S-DALK-IA---KEVDP--QGQRTIGVITKLDLMDEGTDARDVL---EN--KL---LP------LRRGYIGVVNRSQKDI 262 (772)
T ss_dssp C-HHHH-HH---HHHCT--TCSSEEEEEECTTSSCTTCCSHHHH---TT--CS---SC------CSSCEEECCCCCCEES
T ss_pred h-HHHH-HH---HHHHh--cCCCEEEEEeCcccCCcchhhHHHH---HH--Hh---hh------hhccCCceEEeccccc
Confidence 0 1101 11 11111 4689999999999976543222211 10 00 00 0123346889999999
Q ss_pred ccchHHHHHHHHH
Q psy1086 358 STDVNDAKLKIRS 370 (654)
Q Consensus 358 ~~~i~~L~~~i~~ 370 (654)
.++++|.+.+.+
T Consensus 263 -~GvdeL~eaI~~ 274 (772)
T 3zvr_A 263 -DGKKDITAALAA 274 (772)
T ss_dssp -SSSEEHHHHHHH
T ss_pred -ccchhHHHHHHH
Confidence 999888888765
No 428
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.79 E-value=2.3e-09 Score=116.43 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=85.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCC-------------------------------CCCccccccceEEEEeCCCcc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIA-------------------------------SYPFTTIKPNVGVITFDDFRK 225 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~-------------------------------~~~~tTl~p~~G~v~~~~~~~ 225 (654)
-+|+++|.+|+|||||+++|++....+. ..+.+|.......+.+.+ ..
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-~~ 85 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-YF 85 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-CE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-eE
Confidence 4799999999999999999976311110 023345555444555554 57
Q ss_pred EEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHH---HHHHHHHHhHhhcCccee
Q psy1086 226 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLL---LNKELELYKMNLLEKPII 302 (654)
Q Consensus 226 ~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~---~~~el~~~~~~l~~~P~i 302 (654)
+.++||||..++ ...+...+..+|.+++|+|+.. ..++.... ...+...+...+...|.+
T Consensus 86 ~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~----------gsfe~~~~~~~qt~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 86 FTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKK----------GEYEAGMSVEGQTREHIILAKTMGLDQLI 148 (435)
T ss_dssp EEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECST----------THHHHHHSTTCHHHHHHHHHHHTTCTTCE
T ss_pred EEEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCC----------CccccccccchHHHHHHHHHHHcCCCeEE
Confidence 999999997542 2334444556788888888863 11221111 112222222232334678
Q ss_pred EeecccCccch---HhH----HHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHH
Q psy1086 303 LLVNKMDVEGA---QEI----YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDA 364 (654)
Q Consensus 303 lvlNK~D~~~~---~~~----~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L 364 (654)
+++||+|+... ++. .+++.+.+.... +. + ....++++||+++ .++.++
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~-----~~----~----~~~~~i~iSA~~g-~~v~e~ 203 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG-----FN----T----NKVRFVPVVAPSG-DNITHK 203 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTT-----CC----C----TTCEEEECBTTTT-BTTTBC
T ss_pred EEEEcccCCCccccHHHHHHHHHHHHHHHHHcC-----CC----c----CCceEEEeecccC-cccccc
Confidence 89999999762 122 222333322210 00 0 0126899999999 998744
No 429
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=2.8e-09 Score=112.70 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=28.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCCCCc-------cccccceEEE--EeCC-CccEEEEecCcccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPF-------TTIKPNVGVI--TFDD-FRKMSVADLPGLIE 236 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~-------tTl~p~~G~v--~~~~-~~~~~i~D~PGl~~ 236 (654)
+|+|||++|+|||||+++|.+.......+.. .|.......+ ...+ ...+.++||||+.+
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 4799999999999999999886554433311 1221111111 1111 11589999999844
No 430
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.79 E-value=6.8e-10 Score=116.59 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=85.7
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHccC------CC-CCCCCccccc-----------------cceEEEEe----------
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRAR------PK-IASYPFTTIK-----------------PNVGVITF---------- 220 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~~------~~-i~~~~~tTl~-----------------p~~G~v~~---------- 220 (654)
.+..|+++|+||||||||++.|++.. .. +...|++|.. |. +.+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~-~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEA-AFIRPVPSSGHLGGA 133 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTT-EEEEEECC-----CH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCC-ceeecCccccccchh
Confidence 34479999999999999999997532 11 1112222210 11 11110
Q ss_pred ------------CCCccEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHH
Q psy1086 221 ------------DDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKE 288 (654)
Q Consensus 221 ------------~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~e 288 (654)
.++..+.++||||+..... .....+|.+++|+|..... .+..+
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~------------~~~~l--- 188 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGD------------DLQGI--- 188 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----------HHHTTCSEEEEEECC------------------CCC---
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccH------------HHHHH---
Confidence 1124799999999754211 1234566777777765210 00000
Q ss_pred HHHHhHhhcCcceeEeecccCccchHhHH---HHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHH
Q psy1086 289 LELYKMNLLEKPIILLVNKMDVEGAQEIY---DGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 365 (654)
Q Consensus 289 l~~~~~~l~~~P~ilvlNK~D~~~~~~~~---~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~ 365 (654)
.......|.++|+||+|+....... +.+.+.+....... . .+ ...++++||+++ .|+++++
T Consensus 189 ----~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~----~-----~~--~~~vi~iSA~~g-~gi~~L~ 252 (341)
T 2p67_A 189 ----KKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKY----D-----EW--QPRVLTCSALEK-RGIDEIW 252 (341)
T ss_dssp ----CHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSB----T-----TB--CCEEEECBGGGT-BSHHHHH
T ss_pred ----HHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccc----c-----CC--CCcEEEeeCCCC-CCHHHHH
Confidence 0011246889999999997643322 12222221110000 0 00 136889999999 9999999
Q ss_pred HHHHHHHH
Q psy1086 366 LKIRSILD 373 (654)
Q Consensus 366 ~~i~~~l~ 373 (654)
+.+.+.+.
T Consensus 253 ~~l~~~~~ 260 (341)
T 2p67_A 253 HAIIDFKT 260 (341)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 431
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.78 E-value=2.9e-09 Score=119.30 Aligned_cols=170 Identities=22% Similarity=0.246 Sum_probs=92.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCC--ccccccceEEEEeC-----------C------CccEEEEecCccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYP--FTTIKPNVGVITFD-----------D------FRKMSVADLPGLIEG 237 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~--~tTl~p~~G~v~~~-----------~------~~~~~i~D~PGl~~~ 237 (654)
..|+|+|.+|+|||||+++|++... .++. ..|.......+.+. . ...+.++||||...+
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4799999999999999999987522 2222 12222112222211 0 014899999998665
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch----
Q psy1086 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA---- 313 (654)
Q Consensus 238 ~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~---- 313 (654)
..... +.+..+|.+++|+|+... ... .++..+. . .. ....|.++++||+|+...
T Consensus 84 ~~~~~-------r~~~~aD~aILVvDa~~G------v~~---qT~e~l~-~----l~-~~~vPiIVViNKiDl~~~~~~~ 141 (594)
T 1g7s_A 84 TTLRK-------RGGALADLAILIVDINEG------FKP---QTQEALN-I----LR-MYRTPFVVAANKIDRIHGWRVH 141 (594)
T ss_dssp TTSBC-------SSSBSCSEEEEEEETTTC------CCH---HHHHHHH-H----HH-HTTCCEEEEEECGGGSTTCCCC
T ss_pred HHHHH-------HHHhhCCEEEEEEECCCC------ccH---hHHHHHH-H----HH-HcCCeEEEEecccccccccccc
Confidence 43321 122347888899998741 001 2222221 1 11 156899999999998642
Q ss_pred -------------HhHHHHHHHH----HhccccccccCCCc-cc-hhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 314 -------------QEIYDGIRDT----LHNLKDHIHKYPEE-FQ-PEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 314 -------------~~~~~~l~~~----~~~l~~~i~~~~~~-~~-~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
....+.+.+. ...+.... +..+ +. -.......+++++||+++ .|+++|++.+..+++
T Consensus 142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g--l~~e~~~~l~~~~~~vpvv~vSA~tG-~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEG--FESERFDRVTDFASQVSIIPISAITG-EGIPELLTMLMGLAQ 217 (594)
T ss_dssp TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT--CEEEEGGGCSCTTTEEEEEECCTTTC-TTHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--cchHHHHHHHhccCcceEEEEeccCC-CCchhHHHHHHhhcc
Confidence 1111111111 11110000 0000 00 000112237899999999 999999999987664
No 432
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.75 E-value=1.9e-08 Score=115.15 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=79.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc---cCCC---------CCC------CCccccccceEEEEeCCCccEEEEecCcccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISR---ARPK---------IAS------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg---~~~~---------i~~------~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~ 238 (654)
.+|+|+|.+|+|||||+++|++ .... ..+ .+.+|+......+.+.+ ..+.++||||..+
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~d-- 87 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG-HRVNIIDTPGHVD-- 87 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT-EEEEEECCCCCSS--
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC-eeEEEEECcCCcc--
Confidence 4799999999999999999984 2211 112 24567777777788776 5799999999864
Q ss_pred cccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch--HhH
Q psy1086 239 HRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA--QEI 316 (654)
Q Consensus 239 ~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~--~~~ 316 (654)
+.....+.+..+|.+++|+|+... ....+...+ ..+. ....|.++++||+|+... ...
T Consensus 88 -----f~~~~~~~l~~aD~~llVvDa~~g---------~~~~~~~~~-~~~~-----~~~~p~ilviNK~Dl~~~~~~~~ 147 (693)
T 2xex_A 88 -----FTVEVERSLRVLDGAVTVLDAQSG---------VEPQTETVW-RQAT-----TYGVPRIVFVNKMDKLGANFEYS 147 (693)
T ss_dssp -----CCHHHHHHHHHCSEEEEEEETTTB---------SCHHHHHHH-HHHH-----HTTCCEEEEEECTTSTTCCHHHH
T ss_pred -----hHHHHHHHHHHCCEEEEEECCCCC---------CcHHHHHHH-HHHH-----HcCCCEEEEEECCCccccchHHH
Confidence 334566777889999999998742 111222211 1111 147899999999999754 233
Q ss_pred HHHHHHHH
Q psy1086 317 YDGIRDTL 324 (654)
Q Consensus 317 ~~~l~~~~ 324 (654)
.+.+.+.+
T Consensus 148 ~~~l~~~l 155 (693)
T 2xex_A 148 VSTLHDRL 155 (693)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44454443
No 433
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.75 E-value=2e-09 Score=115.40 Aligned_cols=159 Identities=20% Similarity=0.210 Sum_probs=87.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCC--CC--------------CCccccccceEEEEeCCCccEEEEecCccccccccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKI--AS--------------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN 241 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i--~~--------------~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~ 241 (654)
+|+++|.+|+|||||+++|++..... +. ....|.....-.+... ...+.++|+||..++
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~~~iiDtpG~~~f---- 79 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-ARHYAHTDCPGHADY---- 79 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS-SCEEEEEECSSHHHH----
T ss_pred EEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC-CeEEEEEECCChHHH----
Confidence 69999999999999999998741100 00 1122333222222222 357999999996431
Q ss_pred ccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcc-eeEeecccCccchHhHHH--
Q psy1086 242 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYD-- 318 (654)
Q Consensus 242 ~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P-~ilvlNK~D~~~~~~~~~-- 318 (654)
...+...+..+|.+++|+|+... .. ..+...+ .+... ...| .++++||+|+....+..+
T Consensus 80 ---~~~~~~~~~~aD~~ilVvda~~g--------~~-~qt~e~l-----~~~~~-~~vp~iivviNK~Dl~~~~~~~~~~ 141 (397)
T 1d2e_A 80 ---VKNMITGTAPLDGCILVVAANDG--------PM-PQTREHL-----LLARQ-IGVEHVVVYVNKADAVQDSEMVELV 141 (397)
T ss_dssp ---HHHHHHTSSCCSEEEEEEETTTC--------SC-HHHHHHH-----HHHHH-TTCCCEEEEEECGGGCSCHHHHHHH
T ss_pred ---HHHHHhhHhhCCEEEEEEECCCC--------CC-HHHHHHH-----HHHHH-cCCCeEEEEEECcccCCCHHHHHHH
Confidence 12233334456788888888631 01 1111111 11111 4667 578899999975332222
Q ss_pred --HHHHHHhccccccccCCCccchhhhcccceEEEeecccCccc----------hHHHHHHHHHHHH
Q psy1086 319 --GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTD----------VNDAKLKIRSILD 373 (654)
Q Consensus 319 --~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~----------i~~L~~~i~~~l~ 373 (654)
++.+.+.... +.. ...+++++||+++ .+ +.+|++.+.+.++
T Consensus 142 ~~~~~~~l~~~~-----~~~--------~~~~~i~~SA~~g-~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 142 ELEIRELLTEFG-----YKG--------EETPIIVGSALCA-LEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHHHHTT-----SCT--------TTSCEEECCHHHH-HTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcC-----CCc--------ccCcEEEeehhhc-ccccCCCccCCcHHHHHHHHHHhCC
Confidence 2233332210 000 0126899999986 54 7777777766553
No 434
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.75 E-value=9.7e-09 Score=104.86 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=79.5
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccc-cccc-c
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA-HRNL-G 243 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~-~~~~-~ 243 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..|..|.+.+++. -..+.+.|.++... .++. +
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~-i~~v~Q~~~l~~~tv~enl~~ 121 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR-ISFCSQNSWIMPGTIKENIIG 121 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS-----------SCEEEEEEECCSC-EEEECSSCCCCSSBHHHHHHT
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCE-EEEEeCCCccCcccHHHHhhC
Confidence 5789999999999999999999999999999994 6688899988763 11222333332210 0110 0
Q ss_pred chHHHHHHHHHHHHHHHhhcccCc--ccC--CCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHh
Q psy1086 244 MGHQFLRHVERTKLIAMIVDVNGF--QLG--LKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQE 315 (654)
Q Consensus 244 l~~~~l~~i~~~~~il~vvd~~~~--~l~--~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~ 315 (654)
... .. .+....+...++... .+. ...........+|++++++..+++++..+|.++++ +.+|......
T Consensus 122 ~~~---~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 197 (290)
T 2bbs_A 122 VSY---DE-YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 197 (290)
T ss_dssp TCC---CH-HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred ccc---ch-HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHH
Confidence 000 00 000001111111000 000 00011223457999999999999999999999998 6777654443
No 435
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.74 E-value=6.3e-09 Score=104.76 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=81.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
..+++|++..|+.++|+|+||||||||+++|+|. ..| .|.+.+++.. .+ .+.+.|.
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 103 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF-----------YDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTI 103 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCC
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCc
Confidence 5789999999999999999999999999999995 223 5666665410 11 1222222
Q ss_pred cccc-ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCC----CccChHHHHHHHHHHHHHHhHhhcCcceeEee---
Q psy1086 234 LIEG-AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH----PKRSCVETVLLLNKELELYKMNLLEKPIILLV--- 305 (654)
Q Consensus 234 l~~~-~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~----~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl--- 305 (654)
++.. ..++..++... ...++...++..+++..+.-.+.+ ........+|++++++..+++++..+|.++++
T Consensus 104 l~~~tv~enl~~~~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 182 (260)
T 2ghi_A 104 LFNETIKYNILYGKLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182 (260)
T ss_dssp CCSEEHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred ccccCHHHHHhccCCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 2211 00111010000 000011111111111100000000 01123357899999999999999999999999
Q ss_pred -cccCccchHhHHHHHHHH
Q psy1086 306 -NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 306 -NK~D~~~~~~~~~~l~~~ 323 (654)
+.+|........+.+.+.
T Consensus 183 ts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 183 TSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHh
Confidence 788887666665555544
No 436
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.71 E-value=1.2e-08 Score=113.68 Aligned_cols=124 Identities=21% Similarity=0.341 Sum_probs=75.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCC---CCCCCccccccceEEEE----------------------------------
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPK---IASYPFTTIKPNVGVIT---------------------------------- 219 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~---i~~~~~tTl~p~~G~v~---------------------------------- 219 (654)
..|+|+|.+|||||||+|+|.|.... +...|.|+.. .+.+.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--EEEECCSSSEEECCC------------------CCCTTE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE--EEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 47999999999999999999998753 5556655431 11110
Q ss_pred ----eCCC--ccEEEEecCccccccc--cccc--chHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHH
Q psy1086 220 ----FDDF--RKMSVADLPGLIEGAH--RNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL 289 (654)
Q Consensus 220 ----~~~~--~~~~i~D~PGl~~~~~--~~~~--l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el 289 (654)
+... .++.++||||+..... .+.. +.......+.++|++++|+|+.... ........ +
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~---------~~~~~~~~---l 211 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE---------ISDEFSEA---I 211 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC---------CCHHHHHH---H
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC---------CCHHHHHH---H
Confidence 0000 2589999999875322 1222 2234455677889999999986320 00111111 1
Q ss_pred HHHhHhhcCcceeEeecccCccchHhH
Q psy1086 290 ELYKMNLLEKPIILLVNKMDVEGAQEI 316 (654)
Q Consensus 290 ~~~~~~l~~~P~ilvlNK~D~~~~~~~ 316 (654)
..+. -...|.++|+||+|+...++.
T Consensus 212 ~~l~--~~~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 212 GALR--GHEDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp HHTT--TCGGGEEEEEECGGGSCHHHH
T ss_pred HHHH--hcCCCEEEEEECCCccCHHHH
Confidence 1111 135789999999999876544
No 437
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.70 E-value=1.1e-08 Score=113.15 Aligned_cols=126 Identities=20% Similarity=0.301 Sum_probs=76.6
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCCC----------------CC------CCccccccceEEEEeCCCccEEEEecCc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPKI----------------AS------YPFTTIKPNVGVITFDDFRKMSVADLPG 233 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~i----------------~~------~~~tTl~p~~G~v~~~~~~~~~i~D~PG 233 (654)
..+|+|+|.+|||||||++.|++....+ .+ ....|.......+.+.+ ..+.++||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~liDTPG 91 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD-CLVNLLDTPG 91 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT-EEEEEECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC-eEEEEEECCC
Confidence 3479999999999999999998642211 11 22334444455566655 4799999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch
Q psy1086 234 LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 313 (654)
Q Consensus 234 l~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~ 313 (654)
..++ .....+.+..+|.+++|+|+... .. .. ..++..... ....|.++++||+|+...
T Consensus 92 ~~df-------~~~~~~~l~~aD~~IlVvDa~~g--------~~--~~----t~~~~~~~~-~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDF-------SEDTYRTLTAVDCCLMVIDAAKG--------VE--DR----TRKLMEVTR-LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp STTC-------CHHHHHGGGGCSEEEEEEETTTC--------SC--HH----HHHHHHHHT-TTTCCEEEEEECTTSCCS
T ss_pred ChhH-------HHHHHHHHHHCCEEEEEEeCCcc--------ch--HH----HHHHHHHHH-HcCCCEEEEEcCcCCccc
Confidence 7543 23455566778889999998631 01 11 111112221 246889999999999754
Q ss_pred H--hHHHHHHHHH
Q psy1086 314 Q--EIYDGIRDTL 324 (654)
Q Consensus 314 ~--~~~~~l~~~~ 324 (654)
. +..+++.+.+
T Consensus 150 ~~~~~~~~i~~~l 162 (529)
T 2h5e_A 150 DPMELLDEVENEL 162 (529)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh
Confidence 3 2344454443
No 438
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.70 E-value=7.3e-09 Score=110.63 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=85.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCCC---C--CccccccceEEEEeCCC-ccEEEEecCcccccccccccchHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIAS---Y--PFTTIKPNVGVITFDDF-RKMSVADLPGLIEGAHRNLGMGHQFLRH 251 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~~---~--~~tTl~p~~G~v~~~~~-~~~~i~D~PGl~~~~~~~~~l~~~~l~~ 251 (654)
.|+|+|+||||||||+|+|+|..+.... . .-+|. .+.+...+. ..++++|+||+... .....++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~---~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~--- 140 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM---ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTY--- 140 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C---CCEEEECSSCTTEEEEECCCGGGS----SCCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce---eEEeccccccCCeeehHhhcccch----HHHHHHH---
Confidence 8999999999999999999996543221 1 11121 245544432 26899999987421 1111112
Q ss_pred HHHHHHHHHhhcccCcccCCCCCccChHHHHHHH--HHHHHHHhHhh--cCcceeEeecccCcc------------chHh
Q psy1086 252 VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLL--NKELELYKMNL--LEKPIILLVNKMDVE------------GAQE 315 (654)
Q Consensus 252 i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~--~~el~~~~~~l--~~~P~ilvlNK~D~~------------~~~~ 315 (654)
+++.. +-+... ... ++.+ +++...++..+ ..+|.++|+||.|+. ....
T Consensus 141 L~~~~----L~~~~~----------~~~--lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~ 204 (413)
T 1tq4_A 141 LEKMK----FYEYDF----------FII--ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEK 204 (413)
T ss_dssp HHHTT----GGGCSE----------EEE--EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHH
T ss_pred HHHcC----CCccCC----------eEE--eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHH
Confidence 11111 111100 000 2222 34444444444 357888888887765 2333
Q ss_pred HHHHHHHHHhc-cccccccCCCccchhhhcccceEEEeecc--cCccchHHHHHHHHHHHHHhHh
Q psy1086 316 IYDGIRDTLHN-LKDHIHKYPEEFQPEKVIKFQSILPISAK--TNSTDVNDAKLKIRSILDLLAE 377 (654)
Q Consensus 316 ~~~~l~~~~~~-l~~~i~~~~~~~~~~~~~~~~~v~~iSA~--~~~~~i~~L~~~i~~~l~~~~~ 377 (654)
..+.+.+.... +... ...+..++++|++ .. .+++++.+.+.+.++....
T Consensus 205 l~~~l~~l~~~~l~~~------------g~~~~~iiliSsh~l~~-~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 205 VLQDIRLNCVNTFREN------------GIAEPPIFLLSNKNVCH-YDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHHHHHHHHHHHHHHT------------TCSSCCEEECCTTCTTS-TTHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHHHHHHHhc------------CCCCCcEEEEecCcCCc-cCHHHHHHHHHHhCccchh
Confidence 33333333210 0000 0012368899995 44 5699999999988866543
No 439
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.70 E-value=2.9e-08 Score=113.63 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=73.2
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHc---cCCC---C------CC------CCccccccceEEEEeCCCccEEEEecCccccc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISR---ARPK---I------AS------YPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg---~~~~---i------~~------~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~ 237 (654)
..+|+|+|.+|+|||||++.|.. .... + .+ ....|+......+.+.+ ..+.++||||..+
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~-~~i~liDTPG~~d- 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDTPGHVD- 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT-EEEEEECCCSSTT-
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC-eEEEEEECcCccc-
Confidence 34799999999999999999983 2111 1 11 23456666666777765 5799999999754
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch
Q psy1086 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 313 (654)
Q Consensus 238 ~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~ 313 (654)
+.....+.+..+|.+++|+|+... ....+...+ ..+. ....|.++++||+|+...
T Consensus 90 ------f~~~~~~~l~~aD~~ilVvDa~~g---------~~~~t~~~~-~~~~-----~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 ------FTIEVERSMRVLDGAIVVFDSSQG---------VEPQSETVW-RQAE-----KYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ------CHHHHHHHHHHCSEEEEEEETTTC---------SCHHHHHHH-HHHH-----HTTCCEEEEEECTTSTTC
T ss_pred ------hHHHHHHHHHHCCEEEEEEECCCC---------cchhhHHHH-HHHH-----HcCCCEEEEEECCCcccC
Confidence 344567777888999999998742 111222211 1111 147899999999999754
No 440
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.70 E-value=3.9e-08 Score=101.27 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=90.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCC-CCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTK 256 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i-~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~ 256 (654)
+|.|+|.+|||||||++.+.+..... ......|.......+ +....+.+|||||...+... .+ ........++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEP--SY--DSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccch--hh--hhhhhccCCC
Confidence 58899999999999999887643221 111223444444343 33357999999998654210 01 1122344577
Q ss_pred HHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchHhHH---HHHHHHH-hccccccc
Q psy1086 257 LIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY---DGIRDTL-HNLKDHIH 332 (654)
Q Consensus 257 ~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~~~~---~~l~~~~-~~l~~~i~ 332 (654)
.+++|+|..+. .......|. ..+..........|.+++.||+|+...+... ..+.... +.+.+
T Consensus 75 ~~IlV~Ditd~-------~~~~~~~l~---~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~--- 141 (331)
T 3r7w_B 75 ALVYVIDSQDE-------YINAITNLA---MIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE--- 141 (331)
T ss_dssp EEEEECCCSSC-------TTHHHHHHH---HHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSS---
T ss_pred EEEEEEECCch-------HHHHHHHHH---HHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHh---
Confidence 88888888731 112222232 2222222222457888999999997643321 1121111 11110
Q ss_pred cCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 333 KYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
.. +. ..+ ...+.+||++ .++.+.+..+.+.+
T Consensus 142 ~~---~~---~~~-i~f~eTSAkd--~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 142 LG---LD---GVQ-VSFYLTSIFD--HSIYEAFSRIVQKL 172 (331)
T ss_dssp SS---CS---CCC-EEEECCCSSS--SHHHHHHHHHHTTS
T ss_pred hc---cc---ccC-ceEEEeccCC--CcHHHHHHHHHHHH
Confidence 00 00 001 2578899986 47888887776543
No 441
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.69 E-value=1.2e-08 Score=108.16 Aligned_cols=142 Identities=20% Similarity=0.166 Sum_probs=78.6
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++|+|+++.|+.++|+|+|||||||||++|+|.. +..|.+.+++.. .+ .+...|.
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~ 104 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------NTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVF 104 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS------------EEEEEEEESSCBTTSSCHHHHHHTEEEESCCCC
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------CCCeEEEECCEECCcCChHHHhCCEEEEcCCcc
Confidence 57899999999999999999999999999999942 245666665421 11 1111122
Q ss_pred cccc-ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCC----ccChHHHHHHHHHHHHHHhHhhcCcceeEee---
Q psy1086 234 LIEG-AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHP----KRSCVETVLLLNKELELYKMNLLEKPIILLV--- 305 (654)
Q Consensus 234 l~~~-~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~----~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl--- 305 (654)
++.. ..++..+.... ..++..-++..+.+..+.-...+. .......+|++++++..++++|..+|.++++
T Consensus 105 lf~~tv~enl~~~~~~--~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP 182 (390)
T 3gd7_A 105 IFSGTFRKNLDPNAAH--SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 182 (390)
T ss_dssp CCSEEHHHHHCTTCCS--CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH
T ss_pred cCccCHHHHhhhcccc--CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2211 01111100000 001111122222221110000000 0011123899999999999999999999998
Q ss_pred -cccCccchHhHHHHHH
Q psy1086 306 -NKMDVEGAQEIYDGIR 321 (654)
Q Consensus 306 -NK~D~~~~~~~~~~l~ 321 (654)
+.+|........+.+.
T Consensus 183 ts~LD~~~~~~l~~~l~ 199 (390)
T 3gd7_A 183 SAHLDPVTYQIIRRTLK 199 (390)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 7788765555444443
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.67 E-value=4.8e-08 Score=100.58 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=69.9
Q ss_pred cCcceeEeecccCccchHh--HHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 297 LEKPIILLVNKMDVEGAQE--IYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 297 ~~~P~ilvlNK~D~~~~~~--~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
...|.++|+||+|+..... ..+.+.+..... + .+++++||+++ .|+++|++.+.
T Consensus 109 ~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-----------------g-~~~~~~SA~~g-~gi~~L~~~l~----- 164 (302)
T 2yv5_A 109 FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-----------------G-YDVLKVSAKTG-EGIDELVDYLE----- 164 (302)
T ss_dssp TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-----------------T-CEEEECCTTTC-TTHHHHHHHTT-----
T ss_pred CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-----------------C-CeEEEEECCCC-CCHHHHHhhcc-----
Confidence 5789999999999976532 122233322211 1 16899999999 99988765431
Q ss_pred hHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccC-
Q psy1086 375 LAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIAS- 453 (654)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~- 453 (654)
+..++++|++|+|||||+|.+. .......
T Consensus 165 -------------------------------------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~ 194 (302)
T 2yv5_A 165 -------------------------------------------------GFICILAGPSGVGKSSILSRLT-GEELRTQE 194 (302)
T ss_dssp -------------------------------------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred -------------------------------------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence 1357899999999999999999 5432221
Q ss_pred CC-----c--ccccceeEEEEeCCCceEEEEecCCCCCC
Q psy1086 454 YP-----F--TTIKPNVGVITFDDFRKMSVADLPGLIEG 485 (654)
Q Consensus 454 ~~-----~--~t~~~~~~~v~~~~~~~~~i~DTpG~~~~ 485 (654)
.. + +|... ..+.... --.++||||+...
T Consensus 195 i~~~~~~G~~~t~~~--~~~~~~~--~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 195 VSEKTERGRHTTTGV--RLIPFGK--GSFVGDTPGFSKV 229 (302)
T ss_dssp C---------CCCCE--EEEEETT--TEEEESSCCCSSC
T ss_pred cccccCCCCCceeeE--EEEEcCC--CcEEEECcCcCcC
Confidence 11 1 22221 2233322 2478999998643
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.65 E-value=2e-08 Score=112.82 Aligned_cols=137 Identities=16% Similarity=0.043 Sum_probs=81.0
Q ss_pred eEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHH
Q psy1086 168 AVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQ 247 (654)
Q Consensus 168 ~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~ 247 (654)
.++|++..|+.++|+|+||||||||+++|+|..+.....-. .....|++.++.. ......... ....
T Consensus 374 ~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~--~~~~i~~v~Q~~~----------~~~~~tv~e-~~~~ 440 (607)
T 3bk7_A 374 VEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WDLTVAYKPQYIK----------AEYEGTVYE-LLSK 440 (607)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC--CCCCEEEECSSCC----------CCCSSBHHH-HHHH
T ss_pred ecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE--EeeEEEEEecCcc----------CCCCCcHHH-HHHh
Confidence 34455788999999999999999999999996433221110 1122333332211 000000000 0000
Q ss_pred H-HHHH---HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHHH
Q psy1086 248 F-LRHV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYDG 319 (654)
Q Consensus 248 ~-l~~i---~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~~ 319 (654)
. .... +++..++..+++ .+..+.+...+|++++++..++..|...|.++++ +.+|........+.
T Consensus 441 ~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 513 (607)
T 3bk7_A 441 IDSSKLNSNFYKTELLKPLGI-------IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513 (607)
T ss_dssp HHHHHHHCHHHHHHTHHHHTC-------TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHcCC-------chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 0 0001 111222222232 2344667789999999999999999999999999 88998877766666
Q ss_pred HHHHH
Q psy1086 320 IRDTL 324 (654)
Q Consensus 320 l~~~~ 324 (654)
+.+..
T Consensus 514 l~~l~ 518 (607)
T 3bk7_A 514 IRHLM 518 (607)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 444
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.64 E-value=3.9e-08 Score=110.61 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=85.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++++|+++.|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|.
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 425 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCc
Confidence 5789999999999999999999999999999994 66788888876521 11 1222233
Q ss_pred ccccc-cccccch------HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee-
Q psy1086 234 LIEGA-HRNLGMG------HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV- 305 (654)
Q Consensus 234 l~~~~-~~~~~l~------~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl- 305 (654)
++.+. .++..++ .+..+..+.+.+..++..... ............+|++++++..+++++..+|.++++
T Consensus 426 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~---g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlD 502 (578)
T 4a82_A 426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQ---GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD 502 (578)
T ss_dssp CCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTT---GGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcc---hhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 33221 1221111 122222222211111111110 000111223357899999999999999999999998
Q ss_pred ---cccCccchHhHHHHHH
Q psy1086 306 ---NKMDVEGAQEIYDGIR 321 (654)
Q Consensus 306 ---NK~D~~~~~~~~~~l~ 321 (654)
+.+|........+.+.
T Consensus 503 Epts~LD~~~~~~i~~~l~ 521 (578)
T 4a82_A 503 EATSALDLESESIIQEALD 521 (578)
T ss_dssp STTTTCCHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHH
Confidence 6788765444444443
No 445
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.62 E-value=1.7e-08 Score=113.94 Aligned_cols=144 Identities=22% Similarity=0.237 Sum_probs=84.7
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++++|+++.|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|.
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~ 428 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCC
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCc
Confidence 5789999999999999999999999999999994 56777888776520 11 1222233
Q ss_pred cccc-ccccccc---------hHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 234 LIEG-AHRNLGM---------GHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 234 l~~~-~~~~~~l---------~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
+..+ ..++..+ ..+..+.++.+.+.-++-..... ...........+|++++++..+++++..+|.++
T Consensus 429 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g---~~~~~~~~~~~LSgGq~qrv~iAral~~~p~il 505 (595)
T 2yl4_A 429 LFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQG---FNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 505 (595)
T ss_dssp CCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSG---GGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred ccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCccc---ccccccCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 3221 0111111 11112222221111111111000 000011112568999999999999999999999
Q ss_pred ee----cccCccchHhHHHHHHHH
Q psy1086 304 LV----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 304 vl----NK~D~~~~~~~~~~l~~~ 323 (654)
++ +.+|........+.+.+.
T Consensus 506 llDEpts~LD~~~~~~i~~~l~~~ 529 (595)
T 2yl4_A 506 LLDEATSALDAENEYLVQEALDRL 529 (595)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHH
T ss_pred EEECcccCCCHHHHHHHHHHHHHH
Confidence 99 778876655555544443
No 446
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=108.31 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=46.6
Q ss_pred eeeEEEEEeecCc--EEEEcCCCCcHHHHHHHHHccCCC---CCC-CCccccccceEEEEeCCCc--cEEEEecCcccc
Q psy1086 166 ELAVRLELKLIAD--IGLVGFPNAGKSTFLKAISRARPK---IAS-YPFTTIKPNVGVITFDDFR--KMSVADLPGLIE 236 (654)
Q Consensus 166 ~~~i~L~lk~~~~--VgLVG~~gaGKSTLl~~Lsg~~~~---i~~-~~~tTl~p~~G~v~~~~~~--~~~i~D~PGl~~ 236 (654)
..+++|.++.|.. ++|||+||||||||+|+|+|.... +.. .+..+. ...+.+...... .++++|+|++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~-~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQL-QSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEE-EEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceE-eeEEEEeecCccccccchhhhhhhhh
Confidence 5577777888888 999999999999999999997421 111 122222 245666554421 579999999754
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.61 E-value=8.4e-08 Score=96.38 Aligned_cols=136 Identities=17% Similarity=0.165 Sum_probs=66.6
Q ss_pred cEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEe
Q psy1086 225 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 304 (654)
Q Consensus 225 ~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilv 304 (654)
.+.++||||..+..... .++..+..++.. +++++++|.... ..+...+........ .. .....|.++|
T Consensus 110 d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~--------~~~~~~~~~~~~~~~-~~-~~~~~p~~iv 177 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEIL--------KKPNDYCFVRFFALL-ID-LRLGATTIPA 177 (262)
T ss_dssp SEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGC--------CSHHHHHHHHHHHHH-HH-HHHTSCEEEE
T ss_pred CEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhh--------cCHHHHHHHHHHHHH-Hh-cccCCCeEEE
Confidence 68999999976532211 122333333333 455666665421 122222211111111 11 1246799999
Q ss_pred ecccCccchHhHHHHHHHHHhccccccccCC-----Cccc-------hhhhcccceEEEeecccCccchHHHHHHHHHHH
Q psy1086 305 VNKMDVEGAQEIYDGIRDTLHNLKDHIHKYP-----EEFQ-------PEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372 (654)
Q Consensus 305 lNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~-----~~~~-------~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l 372 (654)
+||+|+..... .+.+.+.+.........+. ..+. -.......+++++||+++ ++++++++.+.+.+
T Consensus 178 ~NK~D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~-~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 178 LNKVDLLSEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR-EGFEDLETLAYEHY 255 (262)
T ss_dssp ECCGGGCCHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC-TTHHHHHHHHHHHH
T ss_pred Eeccccccccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc-ccHHHHHHHHHHHh
Confidence 99999876532 2222222211100000000 0000 000011126899999999 99999999998776
Q ss_pred HH
Q psy1086 373 DL 374 (654)
Q Consensus 373 ~~ 374 (654)
..
T Consensus 256 ~~ 257 (262)
T 1yrb_A 256 CT 257 (262)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 448
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.61 E-value=3.9e-08 Score=109.30 Aligned_cols=136 Identities=18% Similarity=0.083 Sum_probs=82.1
Q ss_pred eEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHH
Q psy1086 168 AVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQ 247 (654)
Q Consensus 168 ~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~ 247 (654)
.++|++..|+.++|+|+||||||||+++|+|..+.....-. .....|.+.++.. ... .... ..
T Consensus 304 ~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~--~~~~i~~v~Q~~~----------~~~----~~tv-~~ 366 (538)
T 1yqt_A 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE--WDLTVAYKPQYIK----------ADY----EGTV-YE 366 (538)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC--CCCCEEEECSSCC----------CCC----SSBH-HH
T ss_pred eCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE--ECceEEEEecCCc----------CCC----CCcH-HH
Confidence 44566788999999999999999999999996443221110 1122333332211 000 0001 11
Q ss_pred HHHHH-----HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHH
Q psy1086 248 FLRHV-----ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYD 318 (654)
Q Consensus 248 ~l~~i-----~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~ 318 (654)
.+... .....+..+++..+ +.+..+.+...+|++++++..+++.+...|.++++ |.+|........+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~----l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~ 442 (538)
T 1yqt_A 367 LLSKIDASKLNSNFYKTELLKPLG----IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 442 (538)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTTTT----CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcC----ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11111 00111222232222 22344667789999999999999999999999999 8999887777666
Q ss_pred HHHHHH
Q psy1086 319 GIRDTL 324 (654)
Q Consensus 319 ~l~~~~ 324 (654)
.+.+..
T Consensus 443 ~l~~l~ 448 (538)
T 1yqt_A 443 AIRHLM 448 (538)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 449
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.60 E-value=5.3e-08 Score=109.59 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=85.7
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++++|+++.|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|.
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----------YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc
Confidence 5789999999999999999999999999999994 56777888776520 11 1222233
Q ss_pred ccccc-cccccch-------HHHHHHHHHHHHHHHhhccc-CcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEe
Q psy1086 234 LIEGA-HRNLGMG-------HQFLRHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 304 (654)
Q Consensus 234 l~~~~-~~~~~l~-------~~~l~~i~~~~~il~vvd~~-~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilv 304 (654)
++.+. .++..++ .+..+.++.+.+--++-... +. ..........+|++++++..+++++..+|.+++
T Consensus 428 l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~----~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGL----DTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGG----GSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred CCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccc----cccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 32210 1111111 11111111111111111100 00 011122235689999999999999999999999
Q ss_pred e----cccCccchHhHHHHHHHH
Q psy1086 305 V----NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 305 l----NK~D~~~~~~~~~~l~~~ 323 (654)
+ +.+|........+.+.+.
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDEL 526 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHH
Confidence 9 778877666655555544
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.60 E-value=6e-08 Score=109.17 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=80.6
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++++|+++.|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|.
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----------YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH 427 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCc
Confidence 4578888888889999999999999999999995 44555665554310 01 1111122
Q ss_pred cccc-ccccccch-------HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 234 LIEG-AHRNLGMG-------HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 234 l~~~-~~~~~~l~-------~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
++.+ ..++..++ .+....++.+.+--++-...+ ............+|++++++..+++++..+|.++++
T Consensus 428 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~---g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illl 504 (582)
T 3b5x_A 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ---GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLIL 504 (582)
T ss_pred cccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcc---cccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2211 01111111 111222222211111111000 000111223357999999999999999999999999
Q ss_pred ----cccCccchHhHHHHHHH
Q psy1086 306 ----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 306 ----NK~D~~~~~~~~~~l~~ 322 (654)
+.+|........+.+.+
T Consensus 505 DEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 505 DEATSALDTESERAIQAALDE 525 (582)
T ss_pred ECccccCCHHHHHHHHHHHHH
Confidence 67887665555544443
No 451
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.59 E-value=5.9e-08 Score=109.20 Aligned_cols=144 Identities=21% Similarity=0.327 Sum_probs=87.1
Q ss_pred ceeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecC
Q psy1086 165 EELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLP 232 (654)
Q Consensus 165 e~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~P 232 (654)
-.++++|+++.|+.++|||+||||||||+++|+|. ..|..|.+.+++.. .+ .+.+.|
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 426 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEVDELDVRTVKLKDLRGHISAVPQET 426 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSC
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEECCEEcccCCHHHHHhheEEECCCC
Confidence 35789999999999999999999999999999994 56778888776531 11 122223
Q ss_pred cccccc-cccccch------HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 233 GLIEGA-HRNLGMG------HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 233 Gl~~~~-~~~~~l~------~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
.++.+. .++..++ .+..+..+.+.+.-++..... ............+|++++++..+++++..+|.++++
T Consensus 427 ~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~---g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illl 503 (587)
T 3qf4_A 427 VLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPE---GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503 (587)
T ss_dssp CCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSS---GGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhccc---chhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 332211 1111111 122222222222222211110 000111222346899999999999999999999998
Q ss_pred ----cccCccchHhHHHHHHH
Q psy1086 306 ----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 306 ----NK~D~~~~~~~~~~l~~ 322 (654)
+.+|........+.+.+
T Consensus 504 DEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 504 DDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp ESCCTTSCHHHHHHHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHH
Confidence 67887666555555444
No 452
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.58 E-value=1.1e-08 Score=111.94 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=79.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCC-------------------------CC------CCccccccceEEEEeCCCcc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKI-------------------------AS------YPFTTIKPNVGVITFDDFRK 225 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i-------------------------~~------~~~tTl~p~~G~v~~~~~~~ 225 (654)
-+|+++|.+|+|||||++.|+.....+ .+ ....|+......+.+++ ..
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~-~~ 122 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-RR 122 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-EE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC-eE
Confidence 379999999999999999996422111 01 12334444444455554 57
Q ss_pred EEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCccc--CCCCCccChHHHHHHHHHHHHHHhHhhcCcc-ee
Q psy1086 226 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQL--GLKHPKRSCVETVLLLNKELELYKMNLLEKP-II 302 (654)
Q Consensus 226 ~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l--~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P-~i 302 (654)
+.++|+||...+ ...+...+..+|.+++|+|+..... +.. ......+.+ .+.. ....| .+
T Consensus 123 ~~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~-~~~qt~e~l--------~~~~-~~~vp~ii 185 (467)
T 1r5b_A 123 FSLLDAPGHKGY-------VTNMINGASQADIGVLVISARRGEFEAGFE-RGGQTREHA--------VLAR-TQGINHLV 185 (467)
T ss_dssp EEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTS-TTCCHHHHH--------HHHH-HTTCSSEE
T ss_pred EEEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcCccccccC-CCCcHHHHH--------HHHH-HcCCCEEE
Confidence 999999997532 2233444556788899999873200 000 001111111 1111 24556 78
Q ss_pred EeecccCccch---HhHHH----HHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHH
Q psy1086 303 LLVNKMDVEGA---QEIYD----GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAK 365 (654)
Q Consensus 303 lvlNK~D~~~~---~~~~~----~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~ 365 (654)
+++||+|+... ++.++ ++.+++..... + .+ .....++++||+++ .|+.+++
T Consensus 186 vviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g----~----~~---~~~~~~i~vSA~~g-~~i~~l~ 243 (467)
T 1r5b_A 186 VVINKMDEPSVQWSEERYKECVDKLSMFLRRVAG----Y----NS---KTDVKYMPVSAYTG-QNVKDRV 243 (467)
T ss_dssp EEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHC----C----CH---HHHEEEEECBTTTT-BTTSSCC
T ss_pred EEEECccCCCccccHHHHHHHHHHHHHHHHHhcC----C----Cc---cCCceEEecccccc-ccccccc
Confidence 88999999642 12222 22222221100 0 00 00126899999999 9987654
No 453
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.57 E-value=1.1e-07 Score=101.58 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=45.2
Q ss_pred ceeeeeeecccce--EEEEcCCCCChhhHHHHHHhcCCCccC----CCcccccceeEEEEeCCC--ceEEEEecCCCCCC
Q psy1086 414 ELAVRLELKLIAD--IGLVGFPNAGKSTFLKAISRARPKIAS----YPFTTIKPNVGVITFDDF--RKMSVADLPGLIEG 485 (654)
Q Consensus 414 ~~~~~l~~~~~~~--v~~~G~~~~GKstl~~~l~~~~~~~~~----~~~~t~~~~~~~v~~~~~--~~~~i~DTpG~~~~ 485 (654)
..+++|.++.|.. ++++|++|+|||||+|.|++..+.... .++.+.. ..+.+.-... ..+.++||+|+...
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhc
Confidence 5588999999998 999999999999999999997432111 1222222 1111111111 15899999998653
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.57 E-value=4.1e-08 Score=108.83 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=84.4
Q ss_pred EEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHH
Q psy1086 169 VRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQF 248 (654)
Q Consensus 169 i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~ 248 (654)
.+|+++.|+.+||+|+||||||||+++|+|. +.|..|.+.+.+. .+ ...|+..... .. ....+.
T Consensus 287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~-~i--~~~~q~~~~~-~~-~tv~~~ 350 (538)
T 3ozx_A 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGE-----------ITADEGSVTPEKQ-IL--SYKPQRIFPN-YD-GTVQQY 350 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSBCCEESSCC-CE--EEECSSCCCC-CS-SBHHHH
T ss_pred ccceECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCe-ee--Eeechhcccc-cC-CCHHHH
Confidence 3567888999999999999999999999995 4566676665442 22 2223211100 00 011111
Q ss_pred HHHH------HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHhHHH
Q psy1086 249 LRHV------ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQEIYD 318 (654)
Q Consensus 249 l~~i------~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~~~~ 318 (654)
+... .....+..+++.. .+.+..+.....+|++++++..++++|..+|.++++ +.+|........+
T Consensus 351 l~~~~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 351 LENASKDALSTSSWFFEEVTKRL----NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp HHHHCSSTTCTTSHHHHHTTTTT----TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHhhhhccchhHHHHHHHHHHc----CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 1100 0000111122221 122334667789999999999999999999999999 8899877766666
Q ss_pred HHHHHH
Q psy1086 319 GIRDTL 324 (654)
Q Consensus 319 ~l~~~~ 324 (654)
.+.+..
T Consensus 427 ~l~~l~ 432 (538)
T 3ozx_A 427 AIKRVT 432 (538)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 455
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.55 E-value=1.4e-07 Score=97.03 Aligned_cols=163 Identities=22% Similarity=0.256 Sum_probs=92.8
Q ss_pred cEEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEe
Q psy1086 225 KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILL 304 (654)
Q Consensus 225 ~~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilv 304 (654)
.+.+||+ ...... +.. ..+..+|.+++|+|+... ......+. +.+..... ...|.++|
T Consensus 64 ~~~iwD~--qer~~~----l~~---~~~~~ad~vilV~D~~~~--------~~s~~~l~---~~l~~~~~--~~~piilv 121 (301)
T 1u0l_A 64 SGVIENV--LHRKNL----LTK---PHVANVDQVILVVTVKMP--------ETSTYIID---KFLVLAEK--NELETVMV 121 (301)
T ss_dssp SEEEEEE--CCCSCE----ETT---TTEESCCEEEEEECSSTT--------CCCHHHHH---HHHHHHHH--TTCEEEEE
T ss_pred eEEEEEE--ccccce----eec---cccccCCEEEEEEeCCCC--------CCCHHHHH---HHHHHHHH--CCCCEEEE
Confidence 6899998 221111 111 123456788888888631 11122222 22222211 46899999
Q ss_pred ecccCccchHhHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHHhHhHHHhhhh
Q psy1086 305 VNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVD 384 (654)
Q Consensus 305 lNK~D~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~~~~~~~~~~~ 384 (654)
+||+|+...... ++..++.+..... ..++++||+++ .++++++..+.
T Consensus 122 ~NK~DL~~~~~v-~~~~~~~~~~~~~----------------~~~~~~SAktg-~gv~~lf~~l~--------------- 168 (301)
T 1u0l_A 122 INKMDLYDEDDL-RKVRELEEIYSGL----------------YPIVKTSAKTG-MGIEELKEYLK--------------- 168 (301)
T ss_dssp ECCGGGCCHHHH-HHHHHHHHHHTTT----------------SCEEECCTTTC-TTHHHHHHHHS---------------
T ss_pred EeHHHcCCchhH-HHHHHHHHHHhhh----------------CcEEEEECCCC-cCHHHHHHHhc---------------
Confidence 999999765432 2222322221100 15899999999 99988775532
Q ss_pred hhhhhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCCCccC-CC-------c
Q psy1086 385 RELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIAS-YP-------F 456 (654)
Q Consensus 385 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~-~~-------~ 456 (654)
+..++++|++|+|||||+|.+.+....... .. .
T Consensus 169 ---------------------------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~ 209 (301)
T 1u0l_A 169 ---------------------------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRH 209 (301)
T ss_dssp ---------------------------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------
T ss_pred ---------------------------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCC
Confidence 135789999999999999999986443221 11 1
Q ss_pred ccccceeEEEEeCCCceEEEEecCCCCCC
Q psy1086 457 TTIKPNVGVITFDDFRKMSVADLPGLIEG 485 (654)
Q Consensus 457 ~t~~~~~~~v~~~~~~~~~i~DTpG~~~~ 485 (654)
+|... ..+.... ...++||||+...
T Consensus 210 ~t~~~--~~~~~~~--~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 210 TTTTA--QLLKFDF--GGYVVDTPGFANL 234 (301)
T ss_dssp CCCSC--CEEECTT--SCEEESSCSSTTC
T ss_pred ceeee--EEEEcCC--CCEEEECcCCCcc
Confidence 22221 1222322 2468999997543
No 456
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.54 E-value=2.4e-07 Score=106.14 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=77.3
Q ss_pred ecCcEEEEcCCCCcHHHHHHHHHcc---CCC---C------CCC------CccccccceEEEEeCC------CccEEEEe
Q psy1086 175 LIADIGLVGFPNAGKSTFLKAISRA---RPK---I------ASY------PFTTIKPNVGVITFDD------FRKMSVAD 230 (654)
Q Consensus 175 ~~~~VgLVG~~gaGKSTLl~~Lsg~---~~~---i------~~~------~~tTl~p~~G~v~~~~------~~~~~i~D 230 (654)
...+|+|+|..|+|||||++.|... ... + .++ ...|.......+.+.+ ...+.++|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3557999999999999999999642 111 1 111 2234444444555544 14689999
Q ss_pred cCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCc
Q psy1086 231 LPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDV 310 (654)
Q Consensus 231 ~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~ 310 (654)
|||..++ .....+.+..+|.+++|+|+... ....+.. .... .. ....|.++++||+|+
T Consensus 89 TPG~~df-------~~~~~~~l~~aD~aIlVvDa~~g---------v~~qt~~-~~~~----~~-~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 89 TPGHVDF-------TIEVERSMRVLDGAVMVYCAVGG---------VQPQSET-VWRQ----AN-KYKVPRIAFVNKMDR 146 (704)
T ss_pred CCCccch-------HHHHHHHHHHCCEEEEEEeCCCC---------CcHHHHH-HHHH----HH-HcCCCEEEEEeCCCc
Confidence 9997643 33455667778999999998732 1111111 1111 11 246899999999998
Q ss_pred cchH--hHHHHHHHH
Q psy1086 311 EGAQ--EIYDGIRDT 323 (654)
Q Consensus 311 ~~~~--~~~~~l~~~ 323 (654)
...+ +..+++.+.
T Consensus 147 ~~~~~~~~~~~l~~~ 161 (704)
T 2rdo_7 147 MGANFLKVVNQIKTR 161 (704)
T ss_pred ccccHHHHHHHHHHH
Confidence 7542 334444443
No 457
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.54 E-value=9.2e-09 Score=109.01 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=76.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc------CCCCCCCCccccccceEEEEeCCCccEEEEecCcccccccccccchHHHHH
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRA------RPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLR 250 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~------~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~~~l~~~~l~ 250 (654)
.+|+++|.+|+|||||+|+|++. ...++++|+||..+.... +.. .+.++||||+.........+..+.+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~--~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LES--GATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CST--TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eCC--CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 47999999999999999999987 556778999998876533 333 48999999998655444444445555
Q ss_pred HH---HHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH
Q psy1086 251 HV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ 314 (654)
Q Consensus 251 ~i---~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~ 314 (654)
++ .+.+.++++++.....+ .+...+ +..+ .-...|.++++||.|..+..
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~-~g~l~~------------l~~l--~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLF-FGGLAR------------LDYI--KGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEE-ETTTEE------------EEEE--ESSSEEEEEEECTTSCEEEE
T ss_pred HHhcccccCceEEEEcCCceEE-ECCEEE------------EEEc--cCCCceEEEEecCCcccccc
Confidence 54 44455555665521100 000000 0000 01357889999999987654
No 458
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.52 E-value=5.5e-08 Score=109.75 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=83.4
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++++|+++.|+.++|+|+||||||||+++|+|. ..|..|.+.+++.. .+ .+...|.
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc
Confidence 4578888888889999999999999999999994 66778888876521 11 1122233
Q ss_pred ccccc-cccccch------HHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee-
Q psy1086 234 LIEGA-HRNLGMG------HQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV- 305 (654)
Q Consensus 234 l~~~~-~~~~~l~------~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl- 305 (654)
++.+. .++..++ .+..+.++.+.+..++-.... .........-..+|++++++..+++++..+|.++++
T Consensus 440 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD 516 (598)
T 3qf4_B 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPE---GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516 (598)
T ss_dssp CCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTT---GGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccc---cccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 32211 1111111 111111111111111111100 000001122246899999999999999999999998
Q ss_pred ---cccCccchHhHHHHHHHH
Q psy1086 306 ---NKMDVEGAQEIYDGIRDT 323 (654)
Q Consensus 306 ---NK~D~~~~~~~~~~l~~~ 323 (654)
+.+|........+.+.+.
T Consensus 517 Epts~LD~~~~~~i~~~l~~~ 537 (598)
T 3qf4_B 517 EATSNVDTKTEKSIQAAMWKL 537 (598)
T ss_dssp CCCTTCCHHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHH
Confidence 678876665555555443
No 459
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.51 E-value=8e-08 Score=112.68 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=86.4
Q ss_pred cCcEEEEcCCCCcHHHHHHHHHccCCC--------C--C------CCCccccccceEEEEeCCCccEEEEecCccccccc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAISRARPK--------I--A------SYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAH 239 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Lsg~~~~--------i--~------~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~ 239 (654)
.-+|+++|.+|+|||||+++|++.... . . .....|.....-.+... ...+.++||||..++
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~-~~kI~IIDTPGHedF-- 372 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP-TRHYAHVDCPGHADY-- 372 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-SCEEEEEECCCHHHH--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-CEEEEEEECCChHHH--
Confidence 347999999999999999999874110 0 0 11222333222223323 357999999996432
Q ss_pred ccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcc-eeEeecccCccchHhHHH
Q psy1086 240 RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKP-IILLVNKMDVEGAQEIYD 318 (654)
Q Consensus 240 ~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P-~ilvlNK~D~~~~~~~~~ 318 (654)
...+...+..+|.+++|+|+... ...+..+.+. +.. ....| .++++||+|+....+..+
T Consensus 373 -----~~~mi~gas~AD~aILVVDAtdG------v~~QTrEhL~--------ll~-~lgIP~IIVVINKiDLv~d~e~le 432 (1289)
T 3avx_A 373 -----VKNMITGAAQMDGAILVVAATDG------PMPQTREHIL--------LGR-QVGVPYIIVFLNKCDMVDDEELLE 432 (1289)
T ss_dssp -----HHHHHHTSCCCSEEEEEEETTTC------SCTTHHHHHH--------HHH-HHTCSCEEEEEECCTTCCCHHHHH
T ss_pred -----HHHHHHHHhhCCEEEEEEcCCcc------CcHHHHHHHH--------HHH-HcCCCeEEEEEeecccccchhhHH
Confidence 22233334457788889998642 1112222221 111 13567 578899999975333222
Q ss_pred ----HHHHHHhccccccccCCCccchhhhcccceEEEeecccCcc--------chHHHHHHHHHHH
Q psy1086 319 ----GIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNST--------DVNDAKLKIRSIL 372 (654)
Q Consensus 319 ----~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~--------~i~~L~~~i~~~l 372 (654)
++.+.+.... +.. ...+++++||+++ . ++.+|++.+.+.+
T Consensus 433 ~i~eEi~elLk~~G-----~~~--------~~vp~IpvSAktG-~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 433 LVEMEVRELLSQYD-----FPG--------DDTPIVRGSALKA-LEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHHHHHTT-----SCT--------TTCCEEECCSTTT-TTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcc-----ccc--------cceeEEEEEeccC-CCCCccccccchhhHhHHhhhc
Confidence 2233332210 000 0126899999987 4 3666666665544
No 460
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.51 E-value=6.8e-08 Score=94.36 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=40.6
Q ss_pred cCcceeEeecccCccchH-hHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 297 LEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 297 ~~~P~ilvlNK~D~~~~~-~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
...|.++++||+|+.... ...+.+.+.+.... ...+++++||+++ .+++++++.+.+.+..
T Consensus 153 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~i~~~Sa~~g-~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 153 FRVADLIVINKVALAEAVGADVEKMKADAKLIN----------------PRAKIIEMDLKTG-KGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC----------------TTSEEEECBTTTT-BTHHHHHHHHHHHHC-
T ss_pred hhcCCEEEEecccCCcchhhHHHHHHHHHHHhC----------------CCCeEEEeecCCC-CCHHHHHHHHHHHHHH
Confidence 357889999999986432 12333333332210 0126899999999 9999999999876543
No 461
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.49 E-value=1.9e-07 Score=96.13 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=60.9
Q ss_pred HHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHH--HHHHHHHHhh
Q psy1086 498 RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY--DGIRDTLHNL 575 (654)
Q Consensus 498 ~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~--~~~~~~~~~~ 575 (654)
.+++++|++++|+|++++ ..+++.+..|..++.. .++|.+||+||+|+.+..++. ++..+.+.+
T Consensus 75 ~~~~naD~vliV~d~~~p--------~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMP--------EFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp TEEESCCEEEEEECSTTT--------TCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCEEEEEEECCCC--------CCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 468999999999999831 1256666666654432 478999999999998764321 111111111
Q ss_pred HhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHH
Q psy1086 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 617 (654)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~ 617 (654)
.+.+++++||++|. |+++|++.+.
T Consensus 141 -----------------~g~~~~~~SA~~g~-gi~~L~~~l~ 164 (302)
T 2yv5_A 141 -----------------AGYDVLKVSAKTGE-GIDELVDYLE 164 (302)
T ss_dssp -----------------TTCEEEECCTTTCT-THHHHHHHTT
T ss_pred -----------------CCCeEEEEECCCCC-CHHHHHhhcc
Confidence 12368999999999 9999998765
No 462
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.47 E-value=1.5e-07 Score=103.04 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=89.0
Q ss_pred cceEEEEcCCCCChhhHHHHHH------hcCCCccC----CCcc--------c---ccceeE---------------EEE
Q psy1086 424 IADIGLVGFPNAGKSTFLKAIS------RARPKIAS----YPFT--------T---IKPNVG---------------VIT 467 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~------~~~~~~~~----~~~~--------t---~~~~~~---------------~v~ 467 (654)
...|+++|.+|+||||+++.|. +.+..+.+ .+.. + ..+... .+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999998 43332211 1100 0 000000 001
Q ss_pred eCCCceEEEEecCCCCCCCccccchhHHHHHH--hhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccC
Q psy1086 468 FDDFRKMSVADLPGLIEGAHRNLGMGHQFLRH--VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545 (654)
Q Consensus 468 ~~~~~~~~i~DTpG~~~~~~~~~~~~~~~~~~--~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~ 545 (654)
+.+ ..+.||||||..... ..+....... +..+|.+++|+|++... ...+.. ..+..
T Consensus 181 ~~~-~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g~--------~~~~~a----~~~~~------ 238 (504)
T 2j37_W 181 NEN-FEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIGQ--------ACEAQA----KAFKD------ 238 (504)
T ss_dssp HTT-CCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCCT--------THHHHH----HHHHH------
T ss_pred HCC-CcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEeccccc--------cHHHHH----HHHHh------
Confidence 133 379999999975421 1122111111 23789999999998321 112211 22211
Q ss_pred CCCE-EEEEeCCCccChHHHHHHHHHHHHhhHhhhc--cCCCCCCccccccccceEEEeeecCCCC-hHHHHHHHHHH
Q psy1086 546 EKPI-ILLVNKMDVEGAQEIYDGIRDTLHNLKDHIH--KYPEEFQPEKVIKFQSILPISAKTNSTD-VNDAKLKIRSI 619 (654)
Q Consensus 546 ~~p~-iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vSAktg~~g-v~el~~~i~~~ 619 (654)
..|+ +||+||+|..........+.+.+. .-+. ..+..+ .....|.+.+++||++|. | |.+|++.+.+.
T Consensus 239 ~~~i~gvVlNK~D~~~~~g~~l~~~~~~g---~PI~fig~ge~~--~dl~~f~~~~~vsal~G~-Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 239 KVDVASVIVTKLDGHAKGGGALSAVAATK---SPIIFIGTGEHI--DDFEPFKTQPFISKLLGM-GDIEGLIDKVNEL 310 (504)
T ss_dssp HHCCCCEEEECTTSCCCCTHHHHHHHHHC---CCEEEEECSSST--TCEECCTHHHHHHCCCTT-TTTTTTHHHHTTT
T ss_pred hcCceEEEEeCCccccchHHHHHHHHHhC---CCeEEeccccch--hhhhccCcceeeehhcCC-CcHHHHHHHHHHH
Confidence 1464 899999998643221111111110 0000 001111 112345667889999999 8 99999999866
No 463
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.46 E-value=1.6e-07 Score=96.54 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHccCCCCCCC-C-------ccccccceEEEEeCC--CccEEEEecCccc
Q psy1086 179 IGLVGFPNAGKSTFLKAISRARPKIASY-P-------FTTIKPNVGVITFDD--FRKMSVADLPGLI 235 (654)
Q Consensus 179 VgLVG~~gaGKSTLl~~Lsg~~~~i~~~-~-------~tTl~p~~G~v~~~~--~~~~~i~D~PGl~ 235 (654)
|+|||+||||||||+++|.+.......+ + .+......+.+...+ ...++++|+||+.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 4999999999999999999852221111 1 111112233333222 1257999999984
No 464
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.45 E-value=1.6e-07 Score=100.66 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=32.3
Q ss_pred EEEEcCCCCcHHHHHHHHHccCCCCCCCC-------ccccccceEEEEeCCC--ccEEEEecCccccc
Q psy1086 179 IGLVGFPNAGKSTFLKAISRARPKIASYP-------FTTIKPNVGVITFDDF--RKMSVADLPGLIEG 237 (654)
Q Consensus 179 VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~-------~tTl~p~~G~v~~~~~--~~~~i~D~PGl~~~ 237 (654)
|+|||+||||||||+++|+|......++. .++.....+.+...+. ..++++|+||+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 39999999999999999999765332221 1111112233322221 25789999998543
No 465
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.45 E-value=1.6e-06 Score=92.63 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=85.7
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCcc-----CCCcccccceeEEEEeCC-CceEEEEecCCCCCCCccccchhHHHHHH
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIA-----SYPFTTIKPNVGVITFDD-FRKMSVADLPGLIEGAHRNLGMGHQFLRH 499 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~-----~~~~~t~~~~~~~v~~~~-~~~~~i~DTpG~~~~~~~~~~~~~~~~~~ 499 (654)
.++++|+||+|||||+|.+++...... ....+|.. +.+.-.. ...+.+||+||+.... ......+..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~~~~~ltv~D~~g~~~~~----~~~~~~L~~ 143 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHPNIPNVVFWDLPGIGSTN----FPPDTYLEK 143 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECSSCTTEEEEECCCGGGSS----CCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEeccccccCCeeehHhhcccchH----HHHHHHHHH
Confidence 899999999999999999999432211 11111111 2222111 1258999999975321 112223332
Q ss_pred h--hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCcc--Ch------HHHHHHHH
Q psy1086 500 V--ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE--GA------QEIYDGIR 569 (654)
Q Consensus 500 ~--~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~--~~------~~v~~~~~ 569 (654)
+ ...+..+. ++...+. ...+ .+...+. ..+.|+++|.||.|+. ++ .....++.
T Consensus 144 ~~L~~~~~~~~-lS~G~~~----------kqrv-~la~aL~-----~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~ 206 (413)
T 1tq4_A 144 MKFYEYDFFII-ISATRFK----------KNDI-DIAKAIS-----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL 206 (413)
T ss_dssp TTGGGCSEEEE-EESSCCC----------HHHH-HHHHHHH-----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH
T ss_pred cCCCccCCeEE-eCCCCcc----------HHHH-HHHHHHH-----hcCCCeEEEEecCcccccCcccccCCHHHHHHHH
Confidence 2 33344444 6654211 1111 1222221 1368999999999974 11 00111222
Q ss_pred HHHHhhHh-hhccCCCCCCccccccccceEEEee--ecCCCChHHHHHHHHHHHHHHH
Q psy1086 570 DTLHNLKD-HIHKYPEEFQPEKVIKFQSILPISA--KTNSTDVNDAKLKIRSILDLLA 624 (654)
Q Consensus 570 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vSA--ktg~~gv~el~~~i~~~~~~~~ 624 (654)
+.+.++.. .+...+ ..+..+|++|+ .++. |+++|.+.|.+.+.+..
T Consensus 207 ~~l~~l~~~~l~~~g--------~~~~~iiliSsh~l~~~-~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 207 QDIRLNCVNTFRENG--------IAEPPIFLLSNKNVCHY-DFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHHHHHHTT--------CSSCCEEECCTTCTTST-THHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHhcC--------CCCCcEEEEecCcCCcc-CHHHHHHHHHHhCccch
Confidence 22222210 000000 11235799999 5666 89999999988775443
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.42 E-value=3.2e-07 Score=102.97 Aligned_cols=140 Identities=16% Similarity=0.090 Sum_probs=80.6
Q ss_pred eeEEEEEeec-----CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCccEEEEecCccccccccc
Q psy1086 167 LAVRLELKLI-----ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRN 241 (654)
Q Consensus 167 ~~i~L~lk~~-----~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~~~~ 241 (654)
.+++|++..+ +.++|+|+||||||||+++|+|..+........ ....+.+.+... . ..+... .+.
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~--~~~i~~~~q~~~--~---~~~~tv---~e~ 433 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP--KLNVSMKPQKIA--P---KFPGTV---RQL 433 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCC--SCCEEEECSSCC--C---CCCSBH---HHH
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCcc--CCcEEEeccccc--c---cCCccH---HHH
Confidence 3678888877 779999999999999999999975543332111 111222221110 0 000000 000
Q ss_pred c--cchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee----cccCccchHh
Q psy1086 242 L--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV----NKMDVEGAQE 315 (654)
Q Consensus 242 ~--~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl----NK~D~~~~~~ 315 (654)
. .+...+. .....+.++..+++. +..+.....+|++++++..+++.|..+|.++++ +.+|......
T Consensus 434 ~~~~~~~~~~-~~~~~~~~l~~l~l~-------~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~ 505 (608)
T 3j16_B 434 FFKKIRGQFL-NPQFQTDVVKPLRID-------DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRII 505 (608)
T ss_dssp HHHHCSSTTT-SHHHHHHTHHHHTST-------TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHH
T ss_pred HHHHhhcccc-cHHHHHHHHHHcCCh-------hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHH
Confidence 0 0000000 001112222223332 234566678999999999999999999999999 7889876666
Q ss_pred HHHHHHHHH
Q psy1086 316 IYDGIRDTL 324 (654)
Q Consensus 316 ~~~~l~~~~ 324 (654)
..+.+.+..
T Consensus 506 i~~ll~~l~ 514 (608)
T 3j16_B 506 CSKVIRRFI 514 (608)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
No 467
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.41 E-value=2e-07 Score=114.13 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=83.9
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cEE-EEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KMS-VADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~~-i~D~PG 233 (654)
.++|+|+++.|++|||||++|||||||+++|.|. .+|..|.+.+++.. ++. +..-|-
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~ 1163 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT 1163 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCC
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCE
Confidence 5799999999999999999999999999999994 55666666665420 111 111222
Q ss_pred ccccc-ccccc--------chHHHHHHHHHHHHHHHhhcccC-cccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 234 LIEGA-HRNLG--------MGHQFLRHVERTKLIAMIVDVNG-FQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 234 l~~~~-~~~~~--------l~~~~l~~i~~~~~il~vvd~~~-~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
++.+. .+|.. -..+..+.++.+.+--++-...+ +.-.+++. -..+|++++|+..+++++..+|.++
T Consensus 1164 LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~----G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1164 LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR----GTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT----SCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC----CcccCHHHHHHHHHHHHHHhCCCEE
Confidence 33221 11211 12344555555544444443321 11001111 1358999999999999999999999
Q ss_pred ee----cccCccchH
Q psy1086 304 LV----NKMDVEGAQ 314 (654)
Q Consensus 304 vl----NK~D~~~~~ 314 (654)
++ ..+|.....
T Consensus 1240 iLDEaTSaLD~~tE~ 1254 (1321)
T 4f4c_A 1240 LLDEATSALDTESEK 1254 (1321)
T ss_dssp EEESCCCSTTSHHHH
T ss_pred EEeCccccCCHHHHH
Confidence 98 567765433
No 468
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.35 E-value=3.1e-07 Score=87.46 Aligned_cols=106 Identities=12% Similarity=0.026 Sum_probs=62.8
Q ss_pred cchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHh-hcc--cCCCCEEEEEeCC-CccChHHHH
Q psy1086 490 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY-KMN--LLEKPIILLVNKM-DVEGAQEIY 565 (654)
Q Consensus 490 ~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-~~~--~~~~p~iiv~NK~-Dl~~~~~v~ 565 (654)
..++..|..|+..+|++|+|+|+++. .+ .+...++. ++... ... ..+.|++|++||. |++.+-. .
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~-------~R--~eak~EL~-eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams-~ 181 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAH-------KR--HEWQDEFS-HIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-C 181 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTT-------CC--CCHHHHHH-HHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC-H
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccH-------hH--HHHHHHHH-HHHHHhcchhhhCCCeEEEEeCCCcCccCCCC-H
Confidence 34667788999999999999999842 12 12222221 11211 112 2578999999995 7765421 1
Q ss_pred HHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 566 DGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
.++.+.+. +... ...| .+.++||+||+ |+.|-++.+.+.++
T Consensus 182 ~EI~e~L~-L~~l----~R~W---------~Iq~csA~TGe-GL~EGLdWL~~~l~ 222 (227)
T 3l82_B 182 FYLAHELH-LNLL----NHPW---------LVQDTEAETLT-GFLNGIEWILEEVE 222 (227)
T ss_dssp HHHHHHTT-GGGG----CSCE---------EEEEEETTTCT-THHHHHHHHTTTTT
T ss_pred HHHHHHcC-CcCC----CCCE---------EEEEeECCCCc-CHHHHHHHHHHHHH
Confidence 22332221 2211 1122 48999999999 99999999876553
No 469
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.34 E-value=5.1e-07 Score=110.28 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=85.2
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++++|+++.|+.++|||+||||||||+++|.|. ..|..|.+.+++.. .+ .+..-|.
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 474 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-----------YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV 474 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCC
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCc
Confidence 5789999999999999999999999999999994 56778888876521 11 1222233
Q ss_pred ccccc-cccccch------HHHHHHHHHHHHHHHhhccc-CcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 234 LIEGA-HRNLGMG------HQFLRHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 234 l~~~~-~~~~~l~------~~~l~~i~~~~~il~vvd~~-~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
++.+. .+|..++ .+..+..+.+.+..++.... +.. .........+|++++++..+++++..+|.++++
T Consensus 475 l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~----t~~~~~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 475 LFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD----TLVGERGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp CCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGG----CCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccc----ccccCCCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33221 1111111 12222222222211221111 000 001112246899999999999999999999999
Q ss_pred ----cccCccchHhHHHHHH
Q psy1086 306 ----NKMDVEGAQEIYDGIR 321 (654)
Q Consensus 306 ----NK~D~~~~~~~~~~l~ 321 (654)
+.+|........+.+.
T Consensus 551 DEpts~LD~~~~~~i~~~l~ 570 (1284)
T 3g5u_A 551 DEATSALDTESEAVVQAALD 570 (1284)
T ss_dssp ESTTCSSCHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHH
Confidence 7788765444444443
No 470
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.34 E-value=1.6e-06 Score=90.63 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=68.7
Q ss_pred cCcceeEeecccCccchHhH--HHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHHH
Q psy1086 297 LEKPIILLVNKMDVEGAQEI--YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 374 (654)
Q Consensus 297 ~~~P~ilvlNK~D~~~~~~~--~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~~ 374 (654)
..+|.++|+||+|+...... .+.+...+.. .++ +++.+||.++ .+++.+...+
T Consensus 159 ~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-----------------~G~-~v~~~Sa~~~-~gl~~L~~~~------ 213 (358)
T 2rcn_A 159 LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-----------------IGY-RVLMVSSHTQ-DGLKPLEEAL------ 213 (358)
T ss_dssp HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-----------------TTC-CEEECBTTTT-BTHHHHHHHH------
T ss_pred cCCCEEEEEECccCCCchhHHHHHHHHHHHHh-----------------CCC-cEEEEecCCC-cCHHHHHHhc------
Confidence 46777999999999865431 2222222221 112 5899999999 8887765421
Q ss_pred hHhHHHhhhhhhhhhhHHHHhhCCCccccCCCcccCCCcceeeeeeecccceEEEEcCCCCChhhHHHHHHhcCC-CccC
Q psy1086 375 LAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARP-KIAS 453 (654)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~~~-~~~~ 453 (654)
.+..++++|++|+|||||+|.|++... ....
T Consensus 214 ------------------------------------------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 214 ------------------------------------------------TGRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp ------------------------------------------------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred ------------------------------------------------CCCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 013689999999999999999998654 2211
Q ss_pred -C---Cc----ccccceeEEEEeCCCceEEEEecCCCCCC
Q psy1086 454 -Y---PF----TTIKPNVGVITFDDFRKMSVADLPGLIEG 485 (654)
Q Consensus 454 -~---~~----~t~~~~~~~v~~~~~~~~~i~DTpG~~~~ 485 (654)
. ++ +|.. .....+.. ...++||||+.++
T Consensus 246 ~I~~~~G~g~~tt~~--~~i~~v~q--~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 246 DVSNVSGLGQHTTTA--ARLYHFPH--GGDVIDSPGVREF 281 (358)
T ss_dssp -------------CC--CEEEECTT--SCEEEECHHHHTC
T ss_pred CccccCCCCccceEE--EEEEEECC--CCEecCcccHHHh
Confidence 1 11 1221 12233433 2468999997654
No 471
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=4.6e-08 Score=100.38 Aligned_cols=57 Identities=28% Similarity=0.221 Sum_probs=33.6
Q ss_pred cceEEEEcCCCCChhhHHHHHHhcCCCccC-C-------CcccccceeEEEEeCCCceEEEEecCCCCCC
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISRARPKIAS-Y-------PFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~~~~~~~~-~-------~~~t~~~~~~~v~~~~~~~~~i~DTpG~~~~ 485 (654)
+..++++|++|+|||||+|.|.+....... . ..+|.... .+... ...++||||+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~---~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS---GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET---TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC---CEEEecCCCcccc
Confidence 357899999999999999999886432211 1 12333221 22332 2478999998764
No 472
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.31 E-value=1.5e-06 Score=87.88 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=37.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCCCCC--------CCCccccccceEEEEeCCC--ccEEEEecCcccc
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRARPKIA--------SYPFTTIKPNVGVITFDDF--RKMSVADLPGLIE 236 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~~~i~--------~~~~tTl~p~~G~v~~~~~--~~~~i~D~PGl~~ 236 (654)
.++|||+||||||||+|+|+|..+... +.+.++.....+.+.+... ..++++|+||+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 589999999999999999999754322 2233333445555544332 2579999999754
No 473
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.31 E-value=7.8e-07 Score=94.03 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=64.1
Q ss_pred cchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCccChHHHHHHHH
Q psy1086 490 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIR 569 (654)
Q Consensus 490 ~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~Dl~~~~~v~~~~~ 569 (654)
+.+......+++.++++++|+|++++ + ..|..++..+. .++|+++|+||+|+.+.....+.+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~------------~--~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~~~~~~~~ 119 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDF------------N--GSWLPGLHRFV---GNNKVLLVGNKADLIPKSVKHDKVK 119 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSH------------H--HHCCTTHHHHS---SSSCEEEEEECGGGSCTTSCHHHHH
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCC------------c--ccHHHHHHHHh---CCCcEEEEEEChhcCCcccCHHHHH
Confidence 44555555677788899999999842 1 33444444332 3789999999999975432112222
Q ss_pred HHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHH
Q psy1086 570 DTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 620 (654)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~ 620 (654)
+.+... .+..+ ....+++++||++|+ |+++|++.+.+..
T Consensus 120 ~~l~~~---~~~~g--------~~~~~v~~iSA~~g~-gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 120 HWMRYS---AKQLG--------LKPEDVFLISAAKGQ-GIAELADAIEYYR 158 (368)
T ss_dssp HHHHHH---HHHTT--------CCCSEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred HHHHHH---HHHcC--------CCcccEEEEeCCCCc-CHHHHHhhhhhhc
Confidence 211111 11111 111258999999999 9999999997654
No 474
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.31 E-value=7.6e-07 Score=103.96 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=40.0
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD 222 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~ 222 (654)
.++++|++..|+.++|+|+||||||||+++|+|. +.|..|.+.+++
T Consensus 689 L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl-----------l~P~sG~I~~~~ 734 (986)
T 2iw3_A 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-----------LLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS-----------SCCSEEEEEECT
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEcC
Confidence 5799999999999999999999999999999995 556667776653
No 475
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.30 E-value=9.2e-07 Score=98.28 Aligned_cols=126 Identities=20% Similarity=0.300 Sum_probs=80.0
Q ss_pred cCcEEEEcCCCCcHHHHHHHHH---ccC-------------CCCCCC------CccccccceEEEEeCCCccEEEEecCc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAIS---RAR-------------PKIASY------PFTTIKPNVGVITFDDFRKMSVADLPG 233 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Ls---g~~-------------~~i~~~------~~tTl~p~~G~v~~~~~~~~~i~D~PG 233 (654)
...|||||..++|||||.-+|. |.. ..+.|| -..|+....-.+.|.+ ..+.++||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~-~~iNlIDTPG 109 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD-RVVNLLDTPG 109 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT-EEEEEECCCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC-EEEEEEeCCC
Confidence 3468999999999999999984 211 012222 2346666677788887 4899999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccch
Q psy1086 234 LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGA 313 (654)
Q Consensus 234 l~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~ 313 (654)
..++.. +..+.+.-+|..++|+|+..-. ...+. ..+++.. -...|.++++||+|....
T Consensus 110 HvDF~~-------Ev~raL~~~DgAvlVvda~~GV---------~~qT~-~v~~~a~-----~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSE-------DTYRVLTAVDSALVVIDAAKGV---------EAQTR-KLMDVCR-----MRATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSH-------HHHHHHHSCSEEEEEEETTTBS---------CHHHH-HHHHHHH-----HTTCCEEEEEECTTSCCC
T ss_pred cHHHHH-------HHHHHHHhcCceEEEeecCCCc---------ccccH-HHHHHHH-----HhCCceEEEEecccchhc
Confidence 876544 4667777788888999986421 11111 1222222 257899999999999764
Q ss_pred H--hHHHHHHHHH
Q psy1086 314 Q--EIYDGIRDTL 324 (654)
Q Consensus 314 ~--~~~~~l~~~~ 324 (654)
+ ...+++.+.+
T Consensus 168 d~~~~~~~i~~~l 180 (548)
T 3vqt_A 168 HPLDVMADIEQHL 180 (548)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chhHhhhhhhhhc
Confidence 3 4455555544
No 476
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.26 E-value=5e-06 Score=83.94 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=65.4
Q ss_pred eEEEEcCCCCChhhHHHHHHhcCCCccC--------CCcccccceeEEEEeCC--CceEEEEecCCCCCCCcccc---ch
Q psy1086 426 DIGLVGFPNAGKSTFLKAISRARPKIAS--------YPFTTIKPNVGVITFDD--FRKMSVADLPGLIEGAHRNL---GM 492 (654)
Q Consensus 426 ~v~~~G~~~~GKstl~~~l~~~~~~~~~--------~~~~t~~~~~~~v~~~~--~~~~~i~DTpG~~~~~~~~~---~~ 492 (654)
+++++|+||+|||||+|.+++....... .+.+......+.+.-.. ...+.++|++|+........ .+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 6899999999999999999986443211 11111111111110000 01589999999865432111 11
Q ss_pred h----HHHHHHh--------------hcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEe
Q psy1086 493 G----HQFLRHV--------------ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVN 554 (654)
Q Consensus 493 ~----~~~~~~~--------------~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~N 554 (654)
. ..+..++ ..|+++++++|-.. .++... .+ .+..++. . ..++|+|.|
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~--~gL~~l------D~-~~l~~L~----~--~~~vI~Vi~ 148 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG--HSLRPL------DL-EFMKHLS----K--VVNIIPVIA 148 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS--SSCCHH------HH-HHHHHHH----T--TSEEEEEET
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC--CcCCHH------HH-HHHHHHH----h--cCcEEEEEe
Confidence 1 1122222 23688999999542 122211 11 2222332 1 279999999
Q ss_pred CCCccChHHHHH
Q psy1086 555 KMDVEGAQEIYD 566 (654)
Q Consensus 555 K~Dl~~~~~v~~ 566 (654)
|+|.....+...
T Consensus 149 K~D~lt~~e~~~ 160 (270)
T 3sop_A 149 KADTMTLEEKSE 160 (270)
T ss_dssp TGGGSCHHHHHH
T ss_pred ccccCCHHHHHH
Confidence 999987655433
No 477
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.25 E-value=1.4e-06 Score=106.52 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=83.8
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++++|+++.|+.+||||+||||||||+++|.|. ..|..|.+.+++.. .+ .+..-|-
T Consensus 1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 1117 (1284)
T 3g5u_A 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-----------YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI 1117 (1284)
T ss_dssp BSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-----------SCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCC
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEcccCCHHHHHhceEEECCCCc
Confidence 5688999999999999999999999999999995 45566666655420 11 1111222
Q ss_pred ccccc-ccccc--------chHHHHHHHHHHHHHHHhhccc-CcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeE
Q psy1086 234 LIEGA-HRNLG--------MGHQFLRHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL 303 (654)
Q Consensus 234 l~~~~-~~~~~--------l~~~~l~~i~~~~~il~vvd~~-~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~il 303 (654)
++.+. .+|.. -..+..+..+.+.+--++-... ++.-.+ ...-..+|++++++..+++.+..+|.++
T Consensus 1118 l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~v----ge~G~~LSgGq~Qrv~iARal~~~p~iL 1193 (1284)
T 3g5u_A 1118 LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRV----GDKGTQLSGGQKQRIAIARALVRQPHIL 1193 (1284)
T ss_dssp CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBC----STTSCSSCHHHHHHHHHHHHHHHCCSSE
T ss_pred cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccccccc----CCCCCccCHHHHHHHHHHHHHHcCCCEE
Confidence 22211 11111 1122333333332222222111 110000 1112368999999999999999999999
Q ss_pred ee----cccCccchHhHHHHHHH
Q psy1086 304 LV----NKMDVEGAQEIYDGIRD 322 (654)
Q Consensus 304 vl----NK~D~~~~~~~~~~l~~ 322 (654)
++ +.+|........+.+.+
T Consensus 1194 iLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1194 LLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp EEESCSSSCCHHHHHHHHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHH
Confidence 99 78887765555554443
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.23 E-value=1.7e-06 Score=106.02 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=89.6
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEeCCCc-----------cE-EEEecCc
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-----------KM-SVADLPG 233 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~~~~~-----------~~-~i~D~PG 233 (654)
.++++|+++.|+.++|||++|||||||+++|.| -.+|..|.+.+++.. ++ .+...|-
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~-----------~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~ 502 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR-----------YYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA 502 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT-----------SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhcc-----------ccccccCcccCCCccchhccHHHHhhcccccCCcce
Confidence 589999999999999999999999999999999 467888888887520 12 2222233
Q ss_pred ccccc-cccccch------HHHHHHHHHHHHHHHhhccc-CcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 234 LIEGA-HRNLGMG------HQFLRHVERTKLIAMIVDVN-GFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 234 l~~~~-~~~~~l~------~~~l~~i~~~~~il~vvd~~-~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
++.+. .+|..++ .+..+.++.+.+--++-... +..-.+++. -..+|++++++..+++++..+|.++++
T Consensus 503 Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~----G~~LSGGQkQRiaiARAl~~~~~IliL 578 (1321)
T 4f4c_A 503 LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDR----GTQLSGGQKQRIAIARALVRNPKILLL 578 (1321)
T ss_dssp CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSS----SCCCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCC----CCCCCHHHHHHHHHHHHHccCCCEEEE
Confidence 33221 1222121 23333333332222222221 110001111 135899999999999999999999999
Q ss_pred ----cccCccchHhHHHHHHHHH
Q psy1086 306 ----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 306 ----NK~D~~~~~~~~~~l~~~~ 324 (654)
..+|........+.+.+..
T Consensus 579 DE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 579 DEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ecccccCCHHHHHHHHHHHHHHh
Confidence 6788765544445554443
No 479
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.20 E-value=2e-06 Score=84.12 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=40.4
Q ss_pred cCcceeEeecccCccchH-hHHHHHHHHHhccccccccCCCccchhhhcccceEEEeecccCccchHHHHHHHHHHHH
Q psy1086 297 LEKPIILLVNKMDVEGAQ-EIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 373 (654)
Q Consensus 297 ~~~P~ilvlNK~D~~~~~-~~~~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~~v~~iSA~~~~~~i~~L~~~i~~~l~ 373 (654)
...|.++|+||+|+.... ...+.+.+.+.... ...+++.+||+++ .+++++++.+.+.+.
T Consensus 163 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~g-~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 163 MKTADLIVINKIDLADAVGADIKKMENDAKRIN----------------PDAEVVLLSLKTM-EGFDKVLEFIEKSVK 223 (226)
T ss_dssp HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC----------------TTSEEEECCTTTC-TTHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeccccCchhHHHHHHHHHHHHHhC----------------CCCeEEEEEecCC-CCHHHHHHHHHHHHH
Confidence 357889999999986532 12333333332210 0126899999999 999999999876653
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.19 E-value=4.7e-06 Score=84.68 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=65.8
Q ss_pred EecCCCCCCCccccchhHHHHHHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Q psy1086 477 ADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKM 556 (654)
Q Consensus 477 ~DTpG~~~~~~~~~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK~ 556 (654)
-+.||. ...+..++.+.+..||++++|+|++++. +..+ ..+.. +. .++|.++|+||+
T Consensus 4 ~w~PGh------m~ka~~~~~~~l~~aDvVl~VvDAr~p~---~~~~----~~l~~-------~l---~~kp~ilVlNK~ 60 (282)
T 1puj_A 4 QWFPGH------MAKARREVTEKLKLIDIVYELVDARIPM---SSRN----PMIED-------IL---KNKPRIMLLNKA 60 (282)
T ss_dssp -----C------TTHHHHHHHHHGGGCSEEEEEEETTSTT---TTSC----HHHHH-------HC---SSSCEEEEEECG
T ss_pred cCCchH------HHHHHHHHHHHHhhCCEEEEEEeCCCCC---ccCC----HHHHH-------HH---CCCCEEEEEECc
Confidence 346773 2346678889999999999999998432 1111 11211 11 468999999999
Q ss_pred CccChHHHHHHHHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHHH
Q psy1086 557 DVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDL 622 (654)
Q Consensus 557 Dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~~ 622 (654)
|+.+...+.. +.+.+.+ .+.+++++||+++. |+++|++.+.+.+..
T Consensus 61 DL~~~~~~~~-~~~~~~~------------------~g~~~i~iSA~~~~-gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 61 DKADAAVTQQ-WKEHFEN------------------QGIRSLSINSVNGQ-GLNQIVPASKEILQE 106 (282)
T ss_dssp GGSCHHHHHH-HHHHHHT------------------TTCCEEECCTTTCT-TGGGHHHHHHHHHHH
T ss_pred ccCCHHHHHH-HHHHHHh------------------cCCcEEEEECCCcc-cHHHHHHHHHHHHHH
Confidence 9987533222 1111111 12368999999999 999999998887754
No 481
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.18 E-value=8.4e-07 Score=103.66 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCC----------C------CCccccccceEEEEeC---------------CCcc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIA----------S------YPFTTIKPNVGVITFD---------------DFRK 225 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~----------~------~~~tTl~p~~G~v~~~---------------~~~~ 225 (654)
.+|+|+|.+|+|||||+++|.+....+. + ....|+......+.+. ....
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 4799999999999999999986421111 1 1233555555555554 1246
Q ss_pred EEEEecCcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEee
Q psy1086 226 MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLV 305 (654)
Q Consensus 226 ~~i~D~PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvl 305 (654)
+.++||||..++. ....+.+..+|.+++|+|+... ....+...+ .+.. -...|.++++
T Consensus 100 i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g---------~~~qt~~~~-~~~~-----~~~~p~ilvi 157 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG---------VCVQTETVL-RQAL-----GERIKPVVVI 157 (842)
T ss_dssp EEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB---------SCHHHHHHH-HHHH-----HTTCEEEEEE
T ss_pred EEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCC---------CCHHHHHHH-HHHH-----HcCCCeEEEE
Confidence 8999999986533 3456667778889999998742 112222211 1111 1467889999
Q ss_pred cccCccc
Q psy1086 306 NKMDVEG 312 (654)
Q Consensus 306 NK~D~~~ 312 (654)
||+|+..
T Consensus 158 NK~D~~~ 164 (842)
T 1n0u_A 158 NKVDRAL 164 (842)
T ss_dssp ECHHHHH
T ss_pred ECCCcch
Confidence 9999873
No 482
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.10 E-value=6.4e-07 Score=101.62 Aligned_cols=116 Identities=22% Similarity=0.389 Sum_probs=74.2
Q ss_pred cCcEEEEcCCCCcHHHHHHHH---HccCCCC---------CCCC------ccccccceEEEEeCCCccEEEEecCccccc
Q psy1086 176 IADIGLVGFPNAGKSTFLKAI---SRARPKI---------ASYP------FTTIKPNVGVITFDDFRKMSVADLPGLIEG 237 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~L---sg~~~~i---------~~~~------~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~ 237 (654)
+..|+|||..++|||||..+| +|..... .|+. ..|+....-.+.|.+ ..+.++||||..++
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~-~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN-TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS-CBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC-EEEEEEECCCcHHH
Confidence 456899999999999999988 4543321 1221 234444444566766 47999999997754
Q ss_pred ccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCccchH
Q psy1086 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQ 314 (654)
Q Consensus 238 ~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~~~~ 314 (654)
. .+..+.+.-+|..+.|+|+..-. .. .+. ..+++... ...|.++++||+|....+
T Consensus 81 ~-------~Ev~raL~~~DgavlVVDa~~GV-------~~--qT~-~v~~~a~~-----~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 L-------AEVYRSLSVLDGAILLISAKDGV-------QA--QTR-ILFHALRK-----MGIPTIFFINKIDQNGID 135 (638)
T ss_dssp H-------HHHHHHHTTCSEEECCEESSCTT-------CS--HHH-HHHHHHHH-----HTCSCEECCEECCSSSCC
T ss_pred H-------HHHHHHHHHhCEEEEEEeCCCCC-------cH--HHH-HHHHHHHH-----cCCCeEEEEeccccccCC
Confidence 3 44666777778888899986321 00 111 12222221 467889999999987643
No 483
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.06 E-value=4.6e-06 Score=83.33 Aligned_cols=108 Identities=11% Similarity=0.043 Sum_probs=66.6
Q ss_pred cchhHHHHHHhhcccEEEEEEeCCCcccCCCCCcc-chHHHHHHHHHHHHHhhcccCCCCEEEEEeC-CCccChHHHHHH
Q psy1086 490 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKR-SCVETVLLLNKELELYKMNLLEKPIILLVNK-MDVEGAQEIYDG 567 (654)
Q Consensus 490 ~~~~~~~~~~~~~a~~~ilV~D~~~~~~~~~~~~~-~~~e~~~~~~~~l~~~~~~~~~~p~iiv~NK-~Dl~~~~~v~~~ 567 (654)
..++..|..|+..+|++|+|+|+++. +| ++.+.+..+..-+.. .....+.|++|++|| .|++.+-. ..+
T Consensus 198 ~~lRplWr~Yy~~tdglIfVVDSsDr-------eRleak~EL~eL~~mL~e-~~~l~~apLLVfANKkQDlp~Ams-~~E 268 (312)
T 3l2o_B 198 YSVIPQIQKVCEVVDGFIYVANAEAH-------KRHEWQDEFSHIMAMTDP-AFGSSGRPLLVLSCISQGDVKRMP-CFY 268 (312)
T ss_dssp CCCCHHHHHHHHHCSEEEECCBCBTT-------CCCCHHHHHHHHHHHHCH-HHHCTTCCEEEEEEESSTTSCBCC-HHH
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCcH-------hHHHHHHHHHHHHHHhcc-hhhcCCCeEEEEeCCcccccCCCC-HHH
Confidence 45778899999999999999999843 22 122222211111110 001257899999997 58865422 122
Q ss_pred HHHHHHhhHhhhccCCCCCCccccccccceEEEeeecCCCChHHHHHHHHHHHH
Q psy1086 568 IRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILD 621 (654)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSAktg~~gv~el~~~i~~~~~ 621 (654)
+.+.+. +... ...| .+.++||+||+ |+.|-++.+.+.++
T Consensus 269 I~e~L~-L~~l----~r~W---------~Iq~csA~tGe-GL~EGldWL~~~l~ 307 (312)
T 3l2o_B 269 LAHELH-LNLL----NHPW---------LVQDTEAETLT-GFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHTT-GGGG----CSCE---------EEEEEETTTCT-THHHHHHHHHHHSC
T ss_pred HHHHcC-CccC----CCcE---------EEEecccCCCc-CHHHHHHHHHHHHH
Confidence 333221 2211 1122 48999999999 99999999987664
No 484
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.05 E-value=3.2e-06 Score=93.97 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=48.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCCCCCCCCccccccceEEEEe------CCCccEEEEecCccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF------DDFRKMSVADLPGLIEG 237 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~~i~~~~~tTl~p~~G~v~~------~~~~~~~i~D~PGl~~~ 237 (654)
.+|+++|+||+|||||+|+|+|....+ ++++||.....|...| .....+.++||||+...
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 368999999999999999999986544 7788888877777654 23357999999998754
No 485
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.05 E-value=5.3e-06 Score=92.26 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=46.3
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcCCCccCCCcccccceeEEEEe------CCCceEEEEecCCCCCCCc
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF------DDFRKMSVADLPGLIEGAH 487 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~~~~~~~~~~t~~~~~~~v~~------~~~~~~~i~DTpG~~~~~~ 487 (654)
.+|+++|.+|+|||||+|+|++..... ..+++|.+...+...| ..+..+.++||||+.+...
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~ 106 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK 106 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccc
Confidence 579999999999999999999976533 4556666665555444 2334799999999976543
No 486
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.99 E-value=3.8e-06 Score=78.64 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=28.2
Q ss_pred eEEEEEeecCcEEEEcCCCCcHHHHHHHHHc
Q psy1086 168 AVRLELKLIADIGLVGFPNAGKSTFLKAISR 198 (654)
Q Consensus 168 ~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg 198 (654)
+|+|++..++.++|+|+||||||||++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 4789999999999999999999999998654
No 487
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.93 E-value=6.5e-06 Score=82.68 Aligned_cols=58 Identities=26% Similarity=0.459 Sum_probs=38.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCC-CCCCCCccccccceEEEEeCCCccEEEEecCcccccc
Q psy1086 177 ADIGLVGFPNAGKSTFLKAISRARP-KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238 (654)
Q Consensus 177 ~~VgLVG~~gaGKSTLl~~Lsg~~~-~i~~~~~tTl~p~~G~v~~~~~~~~~i~D~PGl~~~~ 238 (654)
.+++++|.||+|||||+|+|++... ...+.|++|..... +..+ ..+.++||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~--~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSLE--NGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EECT--TSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEeC--CCEEEEECCCcccCc
Confidence 4799999999999999999998765 56678888877652 3333 368999999987543
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.83 E-value=7.6e-06 Score=88.09 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=85.5
Q ss_pred ceEEEEcCCCCChhhHHHHHHhc------CCCccC-C------------------------Cccccccee---EEE-EeC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRA------RPKIAS-Y------------------------PFTTIKPNV---GVI-TFD 469 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~------~~~~~~-~------------------------~~~t~~~~~---~~v-~~~ 469 (654)
..|+++|.+|+||||+++.|... .....+ . ++++.++.. ..+ .+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999998763 111100 0 002222210 000 012
Q ss_pred CCceEEEEecCCCCCCCccccchhHHHH--HHhhcccEEEEEEeCCCcccCCCCCccchHHHHHHHHHHHHHhhcccCCC
Q psy1086 470 DFRKMSVADLPGLIEGAHRNLGMGHQFL--RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEK 547 (654)
Q Consensus 470 ~~~~~~i~DTpG~~~~~~~~~~~~~~~~--~~~~~a~~~ilV~D~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~ 547 (654)
+ ..+.|+||||.... ...+..... ..+..+|.+++|+|++.. . +.+. ....+ . ...
T Consensus 180 ~-~D~vIIDT~G~~~~---~~~l~~~l~~i~~~~~~d~vllVvda~~g---------~--~~~~-~~~~~---~---~~~ 237 (432)
T 2v3c_C 180 K-ADVLIIDTAGRHKE---EKGLLEEMKQIKEITNPDEIILVIDGTIG---------Q--QAGI-QAKAF---K---EAV 237 (432)
T ss_dssp S-CSEEEEECCCSCSS---HHHHHHHHHHTTSSSCCSEEEEEEEGGGG---------G--GHHH-HHHHH---H---TTS
T ss_pred C-CCEEEEcCCCCccc---cHHHHHHHHHHHHHhcCcceeEEeecccc---------H--HHHH-HHHHH---h---hcc
Confidence 2 37899999996532 111111111 112268999999999731 1 1111 11112 1 124
Q ss_pred -C-EEEEEeCCCccChHHHHHHHHHHHHhhHhhhcc--CCCCCCccccccccceEEEeeecCCCC-hHHHHHHHHHHH
Q psy1086 548 -P-IILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK--YPEEFQPEKVIKFQSILPISAKTNSTD-VNDAKLKIRSIL 620 (654)
Q Consensus 548 -p-~iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vSAktg~~g-v~el~~~i~~~~ 620 (654)
| ..+|+||+|..........+ ......-+.. .+..+ .....|.|..++||..|. | +..|++.+.+.+
T Consensus 238 ~~i~gvVlnK~D~~~~~g~~l~~---~~~~~~pi~~ig~Ge~~--~dl~~f~~~~~~s~l~g~-gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 238 GEIGSIIVTKLDGSAKGGGALSA---VAETKAPIKFIGIGEGI--DDLEPFDPKKFISRLLGM-GDLESLLEKAEDMV 309 (432)
T ss_dssp CSCEEEEEECSSSCSTTHHHHHH---HHHSSCCEEEECCSSSS--SSCCBCCHHHHHHHHTCS-SCSSTTSSTTTSCS
T ss_pred cCCeEEEEeCCCCccchHHHHHH---HHHHCCCEEEeecCccc--cccccCCHHHHHHHHcCC-CcHHHHHHHHHHHH
Confidence 5 88999999976432211111 1111000000 01111 111345667789999998 8 877777765443
No 489
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.82 E-value=3.8e-05 Score=82.32 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.8
Q ss_pred cceEEEEcCCCCChhhHHHHHHh
Q psy1086 424 IADIGLVGFPNAGKSTFLKAISR 446 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~~ 446 (654)
+..|+++|.+|+||||++..|..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 35789999999999999998863
No 490
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.77 E-value=2.1e-06 Score=79.36 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.2
Q ss_pred EEEEEeecCcEEEEcCCCCcHHHHHHHHHccC
Q psy1086 169 VRLELKLIADIGLVGFPNAGKSTFLKAISRAR 200 (654)
Q Consensus 169 i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~ 200 (654)
++|+++.++.++|+|+||||||||+++|+|..
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44445555579999999999999999999965
No 491
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.72 E-value=1.2e-05 Score=78.32 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=24.6
Q ss_pred eeeEEEEEeecCcEEEEcCCCCcHHHHHHHHHccC
Q psy1086 166 ELAVRLELKLIADIGLVGFPNAGKSTFLKAISRAR 200 (654)
Q Consensus 166 ~~~i~L~lk~~~~VgLVG~~gaGKSTLl~~Lsg~~ 200 (654)
..+|+|++..+..++|+|+||||||||+++|+|..
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45788888889999999999999999999999964
No 492
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.71 E-value=3.2e-05 Score=88.46 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=38.2
Q ss_pred cChHHHHHHHHHHHHHHhHhhcCcc---eeEee----cccCccchHhHHHHHHHHH
Q psy1086 276 RSCVETVLLLNKELELYKMNLLEKP---IILLV----NKMDVEGAQEIYDGIRDTL 324 (654)
Q Consensus 276 ~~~~~~l~~~~~el~~~~~~l~~~P---~ilvl----NK~D~~~~~~~~~~l~~~~ 324 (654)
..+...+|++++++..++++|..+| .++++ +.+|........+.+.+..
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~ 593 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV 593 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 4566889999999999999998766 58888 7888877666666655543
No 493
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.66 E-value=9.7e-05 Score=76.47 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred cccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 422 KLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 422 ~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
.++..++++|++|+||||+++.+.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 494
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.62 E-value=8.3e-05 Score=85.38 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=74.2
Q ss_pred cCcEEEEcCCCCcHHHHHHHHH---ccCC---CC------CCC------CccccccceEEEEeCC------CccEEEEec
Q psy1086 176 IADIGLVGFPNAGKSTFLKAIS---RARP---KI------ASY------PFTTIKPNVGVITFDD------FRKMSVADL 231 (654)
Q Consensus 176 ~~~VgLVG~~gaGKSTLl~~Ls---g~~~---~i------~~~------~~tTl~p~~G~v~~~~------~~~~~i~D~ 231 (654)
+..|+|||...+|||||.-+|. |... .+ .|+ -..|+....-.+.|.+ ...+.++||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 4568999999999999999884 3211 11 111 1224444444555542 236899999
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHHhhcccCcccCCCCCccChHHHHHHHHHHHHHHhHhhcCcceeEeecccCcc
Q psy1086 232 PGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVE 311 (654)
Q Consensus 232 PGl~~~~~~~~~l~~~~l~~i~~~~~il~vvd~~~~~l~~~~~~~~~~~~l~~~~~el~~~~~~l~~~P~ilvlNK~D~~ 311 (654)
||..++. .+..+.+.-+|..+.|+|+..- ....+.. .+++... ..-|.++++||+|.+
T Consensus 93 PGHvDF~-------~Ev~~aLr~~DgavlvVDaveG---------V~~qT~~-v~~~a~~-----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 93 PGHVDFT-------IEVERSLRVLDGAVVVFCGTSG---------VEPQSET-VWRQANK-----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CSCTTCH-------HHHHHHHHHCSEEEEEEETTTC---------SCHHHHH-HHHHHHH-----HTCCEEEEEECSSST
T ss_pred CCCcccH-------HHHHHHHHHhCeEEEEEECCCC---------CchhHHH-HHHHHHH-----cCCCeEEEEcccccc
Confidence 9987644 4567777778888999998632 1112221 2222211 467889999999987
Q ss_pred chH--hHHHHHHHH
Q psy1086 312 GAQ--EIYDGIRDT 323 (654)
Q Consensus 312 ~~~--~~~~~l~~~ 323 (654)
..+ ...+++.+.
T Consensus 151 ~a~~~~~~~ei~~~ 164 (709)
T 4fn5_A 151 GANFLRVVEQIKKR 164 (709)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CccHHHHHHHhhhh
Confidence 542 334444443
No 495
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.62 E-value=4.1e-06 Score=91.60 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy1086 178 DIGLVGFPNAGKSTFLKAIS 197 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Ls 197 (654)
.|+++|++|||||||++.|+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 496
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.60 E-value=0.00028 Score=79.46 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCChhhHHHHHHhcC
Q psy1086 425 ADIGLVGFPNAGKSTFLKAISRAR 448 (654)
Q Consensus 425 ~~v~~~G~~~~GKstl~~~l~~~~ 448 (654)
+.++++|++|+|||||++.++|..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999863
No 497
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.60 E-value=8.1e-05 Score=79.72 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=19.3
Q ss_pred cceEEEEcCCCCChhhHHHHHH
Q psy1086 424 IADIGLVGFPNAGKSTFLKAIS 445 (654)
Q Consensus 424 ~~~v~~~G~~~~GKstl~~~l~ 445 (654)
+..|+++|.+|+||||++..|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999886
No 498
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.58 E-value=0.00031 Score=71.66 Aligned_cols=29 Identities=28% Similarity=0.185 Sum_probs=22.7
Q ss_pred eeeeecccceEEEEcCCCCChhhHHHHHHh
Q psy1086 417 VRLELKLIADIGLVGFPNAGKSTFLKAISR 446 (654)
Q Consensus 417 ~~l~~~~~~~v~~~G~~~~GKstl~~~l~~ 446 (654)
+++..+ +..++++|.+|+||||++..+..
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 334444 56788999999999999998864
No 499
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.56 E-value=2.6e-05 Score=87.93 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q psy1086 178 DIGLVGFPNAGKSTFLKAISRAR 200 (654)
Q Consensus 178 ~VgLVG~~gaGKSTLl~~Lsg~~ 200 (654)
.|+|||+||||||||+++|+|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999975
No 500
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.49 E-value=0.00014 Score=78.57 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=28.4
Q ss_pred eeeeeecccceEEEEcCCCCChhhHHHHHHhc
Q psy1086 416 AVRLELKLIADIGLVGFPNAGKSTFLKAISRA 447 (654)
Q Consensus 416 ~~~l~~~~~~~v~~~G~~~~GKstl~~~l~~~ 447 (654)
+++|.+..+..++++|.+|+||||+++.|.+.
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 56778888899999999999999999998763
Done!