RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1086
(654 letters)
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 276 bits (709), Expect = 9e-88
Identities = 129/372 (34%), Positives = 192/372 (51%), Gaps = 69/372 (18%)
Query: 43 FLDSLSLYVKGGSGGNG------------QPKYGGLGGRGGNVVCKVKAGASLESV---- 86
F+D + +YVKGG GGNG GG GG+GG+VV + L ++
Sbjct: 2 FVDQVKVYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVV--FEVDEGLRTLMDFR 59
Query: 87 -KKQFKGVRITAASGDNSLVHRLAGRNGEDKILELPVGITAY-ADGGTKLGELNTEEDSI 144
KK FK A G++ + GRN +D ++++P G D + +L
Sbjct: 60 YKKHFK-----AIRGEHGMSKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRA 114
Query: 145 IIAHGGAGG--N-------------AQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGK 189
+IA GG GG N ++NG G+E + LELK++AD+GLVGFP+ GK
Sbjct: 115 VIARGGRGGRGNSRFATPANPAPQLSENGE---PGKERYIVLELKVLADVGLVGFPSVGK 171
Query: 190 STFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFL 249
ST L +S A+PKIA Y FTT+ PN+G++ DD R +ADLPGLIEGAH+ +G+GHQFL
Sbjct: 172 STLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFL 231
Query: 250 RHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMD 309
RH+ERT++I ++D++G + R + L +N+EL Y + L E+P I++ NKMD
Sbjct: 232 RHIERTRVIVHVIDMSGLE------GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285
Query: 310 VEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIR 369
+ A E + ++ L YP + PISA T + + ++
Sbjct: 286 MPEAAENLEAFKEKLT------DDYP-------------VFPISAVTR-EGLRELLFEVA 325
Query: 370 SILDLLAEEEQE 381
+ L+ E
Sbjct: 326 NQLENTPEFPLY 337
Score = 234 bits (598), Expect = 2e-71
Identities = 95/255 (37%), Positives = 140/255 (54%), Gaps = 44/255 (17%)
Query: 390 DSIIIAHGGAGG--N-------------AQNGWLGRKGEELAVRLELKLIADIGLVGFPN 434
+IA GG GG N ++NG G+E + LELK++AD+GLVGFP+
Sbjct: 112 QRAVIARGGRGGRGNSRFATPANPAPQLSENGE---PGKERYIVLELKVLADVGLVGFPS 168
Query: 435 AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGH 494
GKST L +S A+PKIA Y FTT+ PN+G++ DD R +ADLPGLIEGAH+ +G+GH
Sbjct: 169 VGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGH 228
Query: 495 QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVN 554
QFLRH+ERT++I ++D++G + R + L +N+EL Y + L E+P I++ N
Sbjct: 229 QFLRHIERTRVIVHVIDMSGLE------GRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282
Query: 555 KMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 614
KMD+ A E + ++ L YP + PISA T + +
Sbjct: 283 KMDMPEAAENLEAFKEKLT------DDYP-------------VFPISAVTR-EGLRELLF 322
Query: 615 KIRSILDLLAEEEQE 629
++ + L+ E
Sbjct: 323 EVANQLENTPEFPLY 337
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 275 bits (705), Expect = 3e-86
Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 68/378 (17%)
Query: 43 FLDSLSLYVKGGSGGNG------------QPKYGGLGGRGGNVVCKVKAGAS--LESVKK 88
F D L + V G GG+G GG GGRGG+V + + K+
Sbjct: 2 FQDVLVITVAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGGSVYLRARGSVDSLSRLSKR 61
Query: 89 QFKGVRITAASGDNSLVHRLAGRNGEDKILELPVGITAY-ADGGTKLGELNTEEDSIIIA 147
+K A G++ + GR GED ++E+P G + AD G L +L E ++++A
Sbjct: 62 TYK-----AEDGEHGRGSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVA 116
Query: 148 HGGAG--GN-------------AQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTF 192
GGAG GN A+ G +GE+ +RLEL LIAD+GLVG+PNAGKS+
Sbjct: 117 RGGAGGRGNMHFVSPTRQAPRFAEAGE---EGEKRRLRLELMLIADVGLVGYPNAGKSSL 173
Query: 193 LKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHV 252
L A++RA PKIA YPFTT+ PN+GV+ + + ++AD+PG+IEGA G+G +FLRH+
Sbjct: 174 LAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI 233
Query: 253 ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEG 312
RT+++ ++D ++T+ L KE+ Y LL +P ++ +NK+D+
Sbjct: 234 ARTRVLLYVLDAAD----------EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283
Query: 313 AQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSIL 372
+ + + + ++LP+SA T + K + +++
Sbjct: 284 EEAV-------------------KALADALAREGLAVLPVSALTG-AGLPALKEALHALV 323
Query: 373 DLLAEEEQEMVDRELELD 390
E E+
Sbjct: 324 RSTPPPEMPKPVPRKEVQ 341
Score = 229 bits (586), Expect = 8e-69
Identities = 82/262 (31%), Positives = 134/262 (51%), Gaps = 48/262 (18%)
Query: 390 DSIIIAHGGAG--GN-------------AQNGWLGRKGEELAVRLELKLIADIGLVGFPN 434
++++A GGAG GN A+ G +GE+ +RLEL LIAD+GLVG+PN
Sbjct: 111 QTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGE---EGEKRRLRLELMLIADVGLVGYPN 167
Query: 435 AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGH 494
AGKS+ L A++RA PKIA YPFTT+ PN+GV+ + + ++AD+PG+IEGA G+G
Sbjct: 168 AGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL 227
Query: 495 QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVN 554
+FLRH+ RT+++ ++D ++T+ L KE+ Y LL +P ++ +N
Sbjct: 228 EFLRHIARTRVLLYVLDAAD----------EPLKTLETLRKEVGAYDPALLRRPSLVALN 277
Query: 555 KMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKL 614
K+D+ + + + + ++LP+SA T + K
Sbjct: 278 KVDLLEEEAV-------------------KALADALAREGLAVLPVSALTG-AGLPALKE 317
Query: 615 KIRSILDLLAEEEQEMVDRELE 636
+ +++ E E
Sbjct: 318 ALHALVRSTPPPEMPKPVPRKE 339
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 145 bits (367), Expect = 5e-40
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 31/223 (13%)
Query: 424 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483
I L G PN GKS+F+ +SRA + SY FTT VG + + D PGL+
Sbjct: 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNK-YQIIDTPGLL 87
Query: 484 EGAHRNLGMGH----QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELEL 539
+ A N L H+ +I I+D++ C T+
Sbjct: 88 DRAFENRNTIEMTTITALAHING--VILFIIDISE----------QCGLTIKEQINLFYS 135
Query: 540 YKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILP 599
K K I++ NK+D + + + + D++ +
Sbjct: 136 IKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK------------FSS 183
Query: 600 ISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELVKKLK 642
S T V AK+ +L + E ++D+E L KL
Sbjct: 184 FSTLTG-VGVEQAKITACELL-KNDQAESILLDQEQLLNTKLG 224
Score = 144 bits (366), Expect = 7e-40
Identities = 48/217 (22%), Positives = 78/217 (35%), Gaps = 33/217 (15%)
Query: 176 IADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 235
I L G PN GKS+F+ +SRA + SY FTT VG + + D PGL+
Sbjct: 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNK-YQIIDTPGLL 87
Query: 236 EGAHRNLGMGH----QFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELEL 291
+ A N L H+ +I I+D++ C T+
Sbjct: 88 DRAFENRNTIEMTTITALAHING--VILFIIDISE----------QCGLTIKEQINLFYS 135
Query: 292 YKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILP 351
K K I++ NK+D + + + + D++ +
Sbjct: 136 IKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK------------FSS 183
Query: 352 ISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELE 388
S T V AK + +LL ++ E + + E
Sbjct: 184 FSTLTG-VGVEQAK---ITACELLKNDQAESILLDQE 216
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 138 bits (349), Expect = 4e-36
Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 35/231 (15%)
Query: 161 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF 220
R+ + ++L+ I + + G PN GKST LKA++ A+P+IASYPFTT NVG
Sbjct: 153 AREVLKDLPVVDLE-IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED 211
Query: 221 DDFRKMSVADLPGLIEGAH--RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSC 278
FR + D PGL++ RN L LI I D + C
Sbjct: 212 GYFR-YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE----------HC 260
Query: 279 VETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEF 338
+ E + P ++++NK+DV + I +
Sbjct: 261 GFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI-------------------KRL 301
Query: 339 QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEE-EQEMVDRELE 388
+ K + + ISA T ++ K +I L LAE+ +E ++REL
Sbjct: 302 EKFVKEKGLNPIKISALKG-TGIDLVKEEIIKTLRPLAEKVAREKIERELR 351
Score = 138 bits (349), Expect = 4e-36
Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 35/231 (15%)
Query: 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF 468
R+ + ++L+ I + + G PN GKST LKA++ A+P+IASYPFTT NVG
Sbjct: 153 AREVLKDLPVVDLE-IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED 211
Query: 469 DDFRKMSVADLPGLIEGAH--RNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSC 526
FR + D PGL++ RN L LI I D + C
Sbjct: 212 GYFR-YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE----------HC 260
Query: 527 VETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEF 586
+ E + P ++++NK+DV + I +
Sbjct: 261 GFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI-------------------KRL 301
Query: 587 QPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEE-EQEMVDRELE 636
+ K + + ISA T ++ K +I L LAE+ +E ++REL
Sbjct: 302 EKFVKEKGLNPIKISALKG-TGIDLVKEEIIKTLRPLAEKVAREKIERELR 351
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 94.3 bits (235), Expect = 7e-21
Identities = 68/317 (21%), Positives = 117/317 (36%), Gaps = 55/317 (17%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF------DDFRK------- 225
IG+VG PN GKSTF A + +IA+YPFTTI+ NVGV +
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62
Query: 226 ----------MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPK 275
+ + D+ GL+ GAH G+G++FL + + +VD G P
Sbjct: 63 EYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPT 122
Query: 276 RSC-----VETVLLLNKELELYKMNLLEKPI------ILLVNKMDVEGAQEIYDGIRDTL 324
+E L +E++ + +L K I L E GI
Sbjct: 123 DYHDPVEDIEF---LEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNE 179
Query: 325 HNLKDHIHKY-----PEEFQPEKVIKFQSILPISAK-----TNSTDVNDAKLKIRSILDL 374
+++ + +HK P ++ + ++ F S + K N D + I+ ++
Sbjct: 180 NDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQ-IKRLVRE 238
Query: 375 LAEEEQEMV----DRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLV 430
+ ++ EL L A + + + + L +I + L
Sbjct: 239 EEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLD 298
Query: 431 GFPNAGKSTFLKAISRA 447
F + G + I+R
Sbjct: 299 RFGSTGVQ---EVINRV 312
Score = 91.6 bits (228), Expect = 5e-20
Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 52/269 (19%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF------DDFRK------- 473
IG+VG PN GKSTF A + +IA+YPFTTI+ NVGV +
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62
Query: 474 ----------MSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPK 523
+ + D+ GL+ GAH G+G++FL + + +VD G P
Sbjct: 63 EYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPT 122
Query: 524 RSC-----VETVLLLNKELELYKMNLLEKPI------ILLVNKMDVEGAQEIYDGIRDTL 572
+E L +E++ + +L K I L E GI
Sbjct: 123 DYHDPVEDIEF---LEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNE 179
Query: 573 HNLKDHIHKY-----PEEFQPEKVIKFQSILPISAK-----TNSTDVNDAKLKIRSILDL 622
+++ + +HK P ++ + ++ F S + K N D + I+ ++
Sbjct: 180 NDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQ-IKRLVRE 238
Query: 623 LAEEEQEMV----DRELELVKKLKSSLRE 647
+ ++ EL L K K+ E
Sbjct: 239 EEKRGYIVIPTSAAAELTLRKAAKAGFIE 267
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 73.3 bits (181), Expect = 6e-14
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 224
IG+VG PN GKSTF ++ ++ ++PF TI PN + D R
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 225 --KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 262
++V D+ GL++GAH G+G+ FL H+ I +
Sbjct: 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLT 124
Score = 73.3 bits (181), Expect = 6e-14
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 472
IG+VG PN GKSTF ++ ++ ++PF TI PN + D R
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 473 --KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 510
++V D+ GL++GAH G+G+ FL H+ I +
Sbjct: 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLT 124
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 72.2 bits (178), Expect = 1e-13
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 179 IGLVGFPNAGKSTFLKAISRA-RPKIASYPFTTIKPNVGVITFDDFR------------- 224
G+VG PN GKSTF +AI+++ A+YP+ TI P + D R
Sbjct: 23 TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSR 82
Query: 225 ---KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 262
++V D+ GL +GA +G+G+ FL HV I +V
Sbjct: 83 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
Score = 72.2 bits (178), Expect = 1e-13
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 427 IGLVGFPNAGKSTFLKAISRA-RPKIASYPFTTIKPNVGVITFDDFR------------- 472
G+VG PN GKSTF +AI+++ A+YP+ TI P + D R
Sbjct: 23 TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSR 82
Query: 473 ---KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 510
++V D+ GL +GA +G+G+ FL HV I +V
Sbjct: 83 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 70.6 bits (174), Expect = 3e-13
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 224
+G+VG PN GKST A++RA A+YPF TI NVGV+ +D R
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 225 ------KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 262
+ D+ GL++GAH+ G+G+QFL H+ IA ++
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
Score = 70.6 bits (174), Expect = 3e-13
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 472
+G+VG PN GKST A++RA A+YPF TI NVGV+ +D R
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 473 ------KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 510
+ D+ GL++GAH+ G+G+QFL H+ IA ++
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 69.0 bits (170), Expect = 9e-13
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 224
G+VG PN GKST A+++A + A+YPF TI+PN GV+ D R
Sbjct: 5 CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64
Query: 225 --KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 262
M D+ GL+ GA + G+G++FL ++ T I +V
Sbjct: 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVV 104
Score = 69.0 bits (170), Expect = 9e-13
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFR-------------- 472
G+VG PN GKST A+++A + A+YPF TI+PN GV+ D R
Sbjct: 5 CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64
Query: 473 --KMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIV 510
M D+ GL+ GA + G+G++FL ++ T I +V
Sbjct: 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVV 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 2e-09
Identities = 88/545 (16%), Positives = 164/545 (30%), Gaps = 168/545 (30%)
Query: 162 RKGEELAVR---LELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGV- 217
R L +R LEL+ ++ + G +GK+ + A+ SY +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-V-ALDVCL----SYKVQCKMDF-KIF 185
Query: 218 -ITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKR 276
+ + L L + ++ H KL ++ Q L+
Sbjct: 186 WLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-----RIHSIQAELRR--- 236
Query: 277 SCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 336
LL +K Y+ LL +L +++
Sbjct: 237 ------LLKSKP---YENCLL----VL--------------LNVQN-----AKAW----N 260
Query: 337 EFQPEKVIKFQS-ILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIA 395
F IL + TD A LD + E++ S+++
Sbjct: 261 AF------NLSCKILLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVK--SLLLK 309
Query: 396 HGGAGGNAQNGWLGRKGEEL---AVR---LELKLIADIGLVGFPNAGKSTFLKAISRARP 449
+L + ++L + L +IA+ + K ++ +
Sbjct: 310 -----------YLDCRPQDLPREVLTTNPRRLSIIAES-IRDGLA--TWDNWKHVNCDKL 355
Query: 450 KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMI 509
T I+ ++ V+ ++RKM L + F I I
Sbjct: 356 T------TIIESSLNVLEPAEYRKM------------FDRLSV---FPPSA----HIPTI 390
Query: 510 VDVNGFQLGL--KHPKRSCVETVLLLNKELELYKMNLLEK---------PIILLVNKMDV 558
+ L L +S V V+ +L+K +L+EK P I L K+ +
Sbjct: 391 L------LSLIWFDVIKSDVMVVV-----NKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 559 EGAQEI-------YDGIR-----DTLHNLKD-----HI--HKYPEEFQPEKVIKFQSILP 599
E + Y+ + D + D HI H E PE++ F+ +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFL 498
Query: 600 ----ISAKTNSTDVNDAKLKIRSILDLLAEE---EQEMVDREL---ELVKKLKSSLREHQ 649
+ K A SIL+ L + + + D + LV + L + +
Sbjct: 499 DFRFLEQKIRHDST--AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 650 GEMII 654
+I
Sbjct: 557 ENLIC 561
Score = 55.2 bits (132), Expect = 6e-08
Identities = 87/638 (13%), Positives = 183/638 (28%), Gaps = 207/638 (32%)
Query: 29 KQTLSEKSIFTKSRFL-DSLSLY----VKGGSGGNGQPKYGGLGGRGGNVVCKVKAGAS- 82
+ K + + L +L V+ + Y L + + +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTR 110
Query: 83 --LESVKKQFKGVRITAASGDNSLVHRLAGRNGEDKILELPVGITAYADGGTKLGELNTE 140
+E + + ++ A N V R L+L L EL
Sbjct: 111 MYIEQRDRLYNDNQVFAK--YN--VSR------LQPYLKLR----------QALLELRPA 150
Query: 141 EDSIIIAHG--GAG---------------GNAQNG--WL--GRKGEE---LAVRLELKLI 176
++ ++ G G+G WL L + +L
Sbjct: 151 KN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 177 ADIGLVGFPNAGKSTFLK---AISRARPKIASYPF-------------TTIKP-NVG--- 216
D + + L+ + R + S P+ N+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 217 -VITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPK 275
+ T R V D H +L L E L+ +D L P+
Sbjct: 269 LLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PR 320
Query: 276 RSCVETVLLLN------KE----LELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLH 325
L+ ++ + +K +K + + I +L+
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-----LTTI-----------IESSLN 364
Query: 326 NLKDHIHKYPEEFQPEKVIKFQ--SILPISAKTNSTDVNDAKL--KIRSIL--DLLAEEE 379
L+ P E++ F S+ P A + + S++ D++ +
Sbjct: 365 VLE------PAEYRK----MFDRLSVFP----------PSAHIPTILLSLIWFDVIKSDV 404
Query: 380 QEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAVRL-----ELKLIADIGLVGFPN 434
+V+ +L S++ ++ +E + + ELK+
Sbjct: 405 MVVVN-KLHKYSLVE---------------KQPKESTISIPSIYLELKV---------KL 439
Query: 435 AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG---AHRNLG 491
+ ++I + Y + DD +P ++ +H
Sbjct: 440 ENEYALHRSI------VDHYNIPKTFDS------DDL-------IPPYLDQYFYSH---- 476
Query: 492 MGHQF--LRHVERTKLIAMI-VDVNGFQLGLKHPKRSCVETVLLLN--KELELYKMNLLE 546
+GH + H ER L M+ +D + ++H + + +LN ++L+ YK
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK----- 531
Query: 547 KPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPE 584
I D + + + I D L +++++
Sbjct: 532 PYIC----DNDPKYERLVNA-ILDFLPKIEENLICSKY 564
Score = 54.9 bits (131), Expect = 8e-08
Identities = 56/412 (13%), Positives = 114/412 (27%), Gaps = 129/412 (31%)
Query: 308 MDVEGAQEIYDGIRDTLHNL-----KDHIHKYPEEFQPEKVIK---FQSILPISAKTNST 359
MD E + Y +D L + K ++ P+ ++ I+
Sbjct: 7 MDFETGEHQY-QYKDILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHII--------- 55
Query: 360 DVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQN-GWLG--------- 409
DA + L +++EMV + +E N +L
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVE-----------EVLRINYKFLMSPIKTEQRQ 104
Query: 410 ----------------------------RKGEELAVR---LELKLIADIGLVGFPNAGKS 438
R L +R LEL+ ++ + G +GK+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 439 TFLKAISRARPKIASYPFTTIKPNVGV--ITFDDFRKMSVADLPGLIEGAHRNLGMGHQF 496
+ A+ SY + + + L L + ++
Sbjct: 165 W-V-ALDVCL----SYKVQCKMDF-KIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSR 216
Query: 497 LRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIIL----- 551
H KL ++ Q L+ LL +K Y+ LL +L
Sbjct: 217 SDHSSNIKL-----RIHSIQAELRR---------LLKSKP---YENCLL----VLLNVQN 255
Query: 552 --LVNKMDVEGAQEI----YDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 605
N ++ + + + + D L + + + + K
Sbjct: 256 AKAWNAFNL-SCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPDEV-KSLLLKYL 311
Query: 606 STDVNDAKLKIRSI----LDLLAEEEQEMVDR-------ELE-LVKKLKSSL 645
D ++ + L ++AE ++ + + L ++SSL
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Score = 35.2 bits (80), Expect = 0.090
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 39/152 (25%)
Query: 536 ELELYKMNLLEKPIIL-----LVNKMDVEGAQEIYDGIRDTLHNLK-DHIHKYPEE---- 585
+ E + K I+ V+ D +++ D + L + DHI +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 586 ---F-----QPEKVIK--FQSIL---------PISAKTNSTDVNDAKLKIRSILDLLAEE 626
F + E++++ + +L PI + + D L +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYND 122
Query: 627 EQEM----VDRELELVKKLKSSLREHQGEMII 654
Q V R + KL+ +L E + +
Sbjct: 123 NQVFAKYNVSRL-QPYLKLRQALLELRPAKNV 153
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 58.1 bits (141), Expect = 4e-09
Identities = 36/209 (17%), Positives = 70/209 (33%), Gaps = 53/209 (25%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIAS-YPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
I + G N GKS+F+ A+ I S Y TT P + +++ D PGL +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 297
VE+ + + D +L+ + Y+ +++
Sbjct: 97 GELGRLR-------VEKARRVFYRADC----------------GILVTDSAPTPYEDDVV 133
Query: 298 EK------PIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILP 351
P +++VNK+ D L + + E +L
Sbjct: 134 NLFKEMEIPFVVVVNKI-------------DVLGEKAEELKGLYESR------YEAKVLL 174
Query: 352 ISAKTNSTDVNDAKLKIRSILDLLAEEEQ 380
+SA + ++I ++L +E+
Sbjct: 175 VSALQKK---GFDDIG-KTISEILPGDEE 199
Score = 58.1 bits (141), Expect = 4e-09
Identities = 36/209 (17%), Positives = 70/209 (33%), Gaps = 53/209 (25%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIAS-YPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
I + G N GKS+F+ A+ I S Y TT P + +++ D PGL +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545
VE+ + + D +L+ + Y+ +++
Sbjct: 97 GELGRLR-------VEKARRVFYRADC----------------GILVTDSAPTPYEDDVV 133
Query: 546 EK------PIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILP 599
P +++VNK+ D L + + E +L
Sbjct: 134 NLFKEMEIPFVVVVNKI-------------DVLGEKAEELKGLYESR------YEAKVLL 174
Query: 600 ISAKTNSTDVNDAKLKIRSILDLLAEEEQ 628
+SA + ++I ++L +E+
Sbjct: 175 VSALQKK---GFDDIG-KTISEILPGDEE 199
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 55.0 bits (133), Expect = 7e-09
Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 44/218 (20%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 233
I G N GKST + ++ + + P T K + + + D+PG
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--KNHK---IIDMPGFGFMM 58
Query: 234 -LIEGAHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE 290
L + + + H + + + ++VD K ++
Sbjct: 59 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG-------KAAPEIIKRWEKRGEIPID 111
Query: 291 LYKMNLL---EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQ 347
+ L + P I+ VNK+ D + N+++ I+ E+F+ +
Sbjct: 112 VEFYQFLRELDIPTIVAVNKL-------------DKIKNVQEVINFLAEKFEVPLSEIDK 158
Query: 348 SILPISAKT--NSTDVNDAKLKIRSILDLLAEEEQEMV 383
+PISAK N + + I +++ E + V
Sbjct: 159 VFIPISAKFGDNIERLKNR------IFEVIRERQGRRV 190
Score = 55.0 bits (133), Expect = 7e-09
Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 44/218 (20%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 481
I G N GKST + ++ + + P T K + + + D+PG
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--KNHK---IIDMPGFGFMM 58
Query: 482 -LIEGAHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE 538
L + + + H + + + ++VD K ++
Sbjct: 59 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG-------KAAPEIIKRWEKRGEIPID 111
Query: 539 LYKMNLL---EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQ 595
+ L + P I+ VNK+ D + N+++ I+ E+F+ +
Sbjct: 112 VEFYQFLRELDIPTIVAVNKL-------------DKIKNVQEVINFLAEKFEVPLSEIDK 158
Query: 596 SILPISAKT--NSTDVNDAKLKIRSILDLLAEEEQEMV 631
+PISAK N + + I +++ E + V
Sbjct: 159 VFIPISAKFGDNIERLKNR------IFEVIRERQGRRV 190
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 54.6 bits (131), Expect = 1e-08
Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 179 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
I L+G +GKS+ K + + P + +T K I+ F + D PG ++
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 297
F T + ++D +E + L+ +
Sbjct: 83 FDPTFDYEMIF----RGTGALIYVIDAQ----------DDYMEALTRLHITVSKAYKVNP 128
Query: 298 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334
+ + ++K+D + RD D +
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165
Score = 54.6 bits (131), Expect = 1e-08
Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 427 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
I L+G +GKS+ K + + P + +T K I+ F + D PG ++
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545
F T + ++D +E + L+ +
Sbjct: 83 FDPTFDYEMIF----RGTGALIYVIDAQ----------DDYMEALTRLHITVSKAYKVNP 128
Query: 546 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582
+ + ++K+D + RD D +
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 55.4 bits (133), Expect = 2e-08
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 12/162 (7%)
Query: 179 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+ L+G +GKS+ I S TI + F +++ D G
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 297
Q + +++ + DV ++ + + K L+ +
Sbjct: 66 --MENYFTKQKDHIFQMVQVLIHVFDVE---------STEVLKDIEIFAKALKQLRKYSP 114
Query: 298 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQ 339
+ I +L++KMD+ + + + + NL + ++
Sbjct: 115 DAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156
Score = 55.4 bits (133), Expect = 2e-08
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 12/162 (7%)
Query: 427 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+ L+G +GKS+ I S TI + F +++ D G
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545
Q + +++ + DV ++ + + K L+ +
Sbjct: 66 --MENYFTKQKDHIFQMVQVLIHVFDVE---------STEVLKDIEIFAKALKQLRKYSP 114
Query: 546 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQ 587
+ I +L++KMD+ + + + + NL + ++
Sbjct: 115 DAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 51.3 bits (123), Expect = 2e-07
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 21/156 (13%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF--DDFRKMSVADLPGLIEGA 238
VG ++GK+ + + + T+I + + + +++ DLPG
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPG----- 63
Query: 239 HRNLGMGHQFLRH-VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 297
H +L Q L + + +VD FQ R + L + L
Sbjct: 64 HESL--RFQLLDRFKSSARAVVFVVDSAAFQ-------REVKDVAEFLYQVLIDSMALKN 114
Query: 298 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333
+++ NK D+ A+ I+ L + +
Sbjct: 115 SPSLLIACNKQDIAMAKSAKL-IQQQLEKELNTLRV 149
Score = 51.3 bits (123), Expect = 2e-07
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 21/156 (13%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITF--DDFRKMSVADLPGLIEGA 486
VG ++GK+ + + + T+I + + + +++ DLPG
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPG----- 63
Query: 487 HRNLGMGHQFLRH-VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545
H +L Q L + + +VD FQ R + L + L
Sbjct: 64 HESL--RFQLLDRFKSSARAVVFVVDSAAFQ-------REVKDVAEFLYQVLIDSMALKN 114
Query: 546 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581
+++ NK D+ A+ I+ L + +
Sbjct: 115 SPSLLIACNKQDIAMAKSAKL-IQQQLEKELNTLRV 149
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 51.3 bits (124), Expect = 4e-07
Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 43/188 (22%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN------VGVITFDDFRKMSVADLP 232
+ +VG PN GKST L + K++ + K +GV + ++ D P
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT--KVS---IISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 67
Query: 233 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY 292
G+ E ++ +GH + +++ DV F ++ E
Sbjct: 68 GIYEPKKSDV-LGHSMVEIAKQS---LEEADVILF----------MIDATEGWRPRDEEI 113
Query: 293 KMNLLEK---PIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSI 349
N ++ P+I+++NK+D G + N+ I + ++ + I
Sbjct: 114 YQNFIKPLNKPVIVVINKIDKIGPAK----------NVLPLIDEIHKKH-----PELTEI 158
Query: 350 LPISAKTN 357
+PISA
Sbjct: 159 VPISALKG 166
Score = 51.3 bits (124), Expect = 4e-07
Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 43/188 (22%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN------VGVITFDDFRKMSVADLP 480
+ +VG PN GKST L + K++ + K +GV + ++ D P
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT--KVS---IISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 67
Query: 481 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY 540
G+ E ++ +GH + +++ DV F ++ E
Sbjct: 68 GIYEPKKSDV-LGHSMVEIAKQS---LEEADVILF----------MIDATEGWRPRDEEI 113
Query: 541 KMNLLEK---PIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSI 597
N ++ P+I+++NK+D G + N+ I + ++ + I
Sbjct: 114 YQNFIKPLNKPVIVVINKIDKIGPAK----------NVLPLIDEIHKKH-----PELTEI 158
Query: 598 LPISAKTN 605
+PISA
Sbjct: 159 VPISALKG 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 9e-07
Identities = 80/558 (14%), Positives = 162/558 (29%), Gaps = 202/558 (36%)
Query: 78 KAGASLESVKKQFKGVRITAASGDNSLVHRLAGR---NGEDKILELPVGITAYADGGTKL 134
K G + + G++ +H LA + + +++ I Y
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGND--IHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 135 GE-LNTEEDSIIIAHGGAG-----------GNAQNGWLGRKGEELAVRLEL-----KLIA 177
+ + +S + G G GN + + EEL +L L+
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-----EELR---DLYQTYHVLVG 185
Query: 178 DI---------GLVGFPNAGKSTFLKAIS--------RARPK---IASYPFTTIKPNVGV 217
D+ L+ + F + ++ P + S P + P +GV
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--PLIGV 243
Query: 218 ITFDDFR------KMSVADLPGLIEGA----------------------HRN-------- 241
I + + +L ++GA +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 242 --LGM-GHQFLRHVERT-KLIAMIVDVN----GFQLGLKHPKRSCVETVL-LLNKELELY 292
+G+ ++ + ++ ++ N L + + + V+ + N L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA- 362
Query: 293 KMNLLEKPI-ILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKY---PEEFQ---P--EK 342
K + I LVN GA+ + G +L+ L + K Q P E+
Sbjct: 363 -----GKQVEISLVN-----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 343 VIKFQSI-LPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIA------ 395
+KF + LP+++ +S LL ++++++L +++
Sbjct: 413 KLKFSNRFLPVASPFHS--------------HLL-VPASDLINKDLVKNNVSFNAKDIQI 457
Query: 396 ---HGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRAR---P 449
G + + ++ R+ + I R
Sbjct: 458 PVYDTFDGSDLRV-----LSGSISERI---------------------VDCIIRLPVKWE 491
Query: 450 KIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG----AHRNL-GMGHQFLRHVERTK 504
+ T I + F PG G HRN G G +R +
Sbjct: 492 TTTQFKATHI------LDFG----------PGGASGLGVLTHRNKDGTG---VRVI---- 528
Query: 505 LIAMIVDVN-GFQLGLKH 521
+A +D+N G K
Sbjct: 529 -VAGTLDINPDDDYGFKQ 545
Score = 44.3 bits (104), Expect = 1e-04
Identities = 83/558 (14%), Positives = 155/558 (27%), Gaps = 201/558 (36%)
Query: 166 ELAVRLELKLIAD---------------IGLVGFPNAGKSTFLKA--I-SRARPKIASYP 207
EL + L ++ + L F ++ +L+ I + A +
Sbjct: 59 ELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEF----ENCYLEGNDIHALAAKLLQEND 113
Query: 208 FTTIKPNVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVER--TKLIAMIVDVN 265
T +K + + +A P + + R V +L+A+
Sbjct: 114 TTLVKTKELIKNY--ITARIMAKRP--FDKKSNSA-----LFRAVGEGNAQLVAI----- 159
Query: 266 GF--QLGLKHPKRSCVETVLLLNKEL-ELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRD 322
F Q G + +EL +LY+ ++ ++ +
Sbjct: 160 -FGGQ-G-------NTDDYF---EELRDLYQT---YHVLV-----------GDLIKFSAE 193
Query: 323 TLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEM 382
TL L + F + + L + T D
Sbjct: 194 TLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDY--------------------- 230
Query: 383 VDRELELDSI-----II-----AHGGAGGNAQNGWLGRKGEELAVRLELKLIADIGLVGF 432
L SI +I AH LG EL L
Sbjct: 231 ------LLSIPISCPLIGVIQLAHYVVTAKL----LGFTPGELRSYL------------- 267
Query: 433 PNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL--IEGAHRNL 490
G + + + A IA +++ F + L I G
Sbjct: 268 --KGATGHSQGLVTAVA-IAE-----------TDSWESFFVSVRKAITVLFFI-GVR--- 309
Query: 491 GMGHQFLRHVERT-KLIAMIVDVN----GFQLGLKHPKRSCVETVL-LLNKELELYKMNL 544
++ + ++ ++ N L + + + V+ + N L
Sbjct: 310 --CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA----- 362
Query: 545 LEKPI-ILLVNKMDVEGAQE-IYDGIRDTLHNLKDHIHKY---PEEFQ---P--EKVIKF 594
K + I LVN GA+ + G +L+ L + K Q P E+ +KF
Sbjct: 363 -GKQVEISLVN-----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 595 QSI-LPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELEL-VKKLK---------S 643
+ LP+++ +S + A I +++V + K ++ S
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLI----------NKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 644 SLREHQGE-------MII 654
LR G II
Sbjct: 467 DLRVLSGSISERIVDCII 484
Score = 38.1 bits (88), Expect = 0.011
Identities = 52/329 (15%), Positives = 101/329 (30%), Gaps = 115/329 (34%)
Query: 308 MDV----EGAQEIYDG----IRDTL-HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNS 358
MD+ + AQ++++ +DT ++ D + P I F K
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP----VNLTIHFGG-----EKGKR 1683
Query: 359 TDVNDAKLKIRSILDLLAEEEQEMVDREL-ELDSIIIAHGGAG-----GNAQ------NG 406
N + + +I+D + + E + +E+ E + G Q
Sbjct: 1684 IRENYSAMIFETIVD--GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM-- 1739
Query: 407 WLGRKGEELAVRLELKLIADIGLVGFPN--AGKS----TFLKAISRARPKIASYPFTTIK 460
E A + + GL+ AG S L +++
Sbjct: 1740 -------EKAA---FEDLKSKGLIPADATFAGHSLGEYAALASLA--------------- 1774
Query: 461 PNVGVITFDD------FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNG 514
V++ + +R M++ E N GM IA +N
Sbjct: 1775 ---DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-------------IA----INP 1814
Query: 515 FQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIY--------- 565
++ E + + + + L+E +VN +VE Q Y
Sbjct: 1815 GRVAAS----FSQEALQYVVERVGKRTGWLVE-----IVN-YNVENQQ--YVAAGDLRAL 1862
Query: 566 DGIRDTLHNLKDH---IHKYPEEFQPEKV 591
D + + L+ +K I + + E+V
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 36.2 bits (83), Expect = 0.042
Identities = 47/294 (15%), Positives = 84/294 (28%), Gaps = 102/294 (34%)
Query: 92 GVRITAASGDN--SLVHRLAGRNGEDKILELPVGIT--AYADGGTKLGELN---TEEDSI 144
G I +N +L G G+ +I E + DG K ++ E +
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 145 IIAHGGAG-----GNAQ------NGWLGRKGEELAVRLELKLIADIGLVGFPN--AGKS- 190
G Q E A + + GL+ AG S
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLM---------EKAA---FEDLKSKGLIPADATFAGHSL 1764
Query: 191 ---TFLKAISRARPKIASYPFTTIKPNVGVITFDD------FRKMSVADLPGLIEGAHRN 241
L +++ V++ + +R M++ E N
Sbjct: 1765 GEYAALASLA------------------DVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 242 LGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLEKPI 301
GM IA +N ++ E + + + + L+E
Sbjct: 1807 YGM-------------IA----INPGRVAAS----FSQEALQYVVERVGKRTGWLVE--- 1842
Query: 302 ILLVNKMDVEGAQEIY---------DGIRDTLHNLKDH---IHKYPEEFQPEKV 343
+VN +VE Q Y D + + L+ +K I + + E+V
Sbjct: 1843 --IVN-YNVENQQ--YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 49.4 bits (119), Expect = 1e-06
Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 46/187 (24%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN------VGVITFDDFRKMSVADLP 232
I +VG PN GKST L + KI+ T+ K VG+ T + + D P
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ--KIS---ITSRKAQTTRHRIVGIHTEGAY-QAIYVDTP 64
Query: 233 GLIEGAHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE 290
GL R + M + +L+ +V+ + E VL +E
Sbjct: 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--------DEMVLNKLRE-- 114
Query: 291 LYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSIL 350
+ P+IL VNK+D + +L H+ + F I+
Sbjct: 115 ------GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQM------NFLDIV 152
Query: 351 PISAKTN 357
PISA+T
Sbjct: 153 PISAETG 159
Score = 49.4 bits (119), Expect = 1e-06
Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 46/187 (24%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPN------VGVITFDDFRKMSVADLP 480
I +VG PN GKST L + KI+ T+ K VG+ T + + D P
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ--KIS---ITSRKAQTTRHRIVGIHTEGAY-QAIYVDTP 64
Query: 481 GLIEGAHRNLG--MGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE 538
GL R + M + +L+ +V+ + E VL +E
Sbjct: 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--------DEMVLNKLRE-- 114
Query: 539 LYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSIL 598
+ P+IL VNK+D + +L H+ + F I+
Sbjct: 115 ------GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQM------NFLDIV 152
Query: 599 PISAKTN 605
PISA+T
Sbjct: 153 PISAETG 159
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 49.4 bits (119), Expect = 2e-06
Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 41/184 (22%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASY-PFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+ +VG PN GKST L + + S P TT K G++T ++ D PGL +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRR-QIVFVDTPGLHKP 68
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKE----LELYK 293
+G + V V+ + V+ E K
Sbjct: 69 MDA---LGEFMDQEVYEA---LADVNAVVW----------VVDLRHPPTPEDELVARALK 112
Query: 294 MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPIS 353
+ + PI+L+ NK+ D ++ + Y E +S
Sbjct: 113 PLVGKVPILLVGNKL-------------DAAKYPEEAMKAYHELLP------EAEPRMLS 153
Query: 354 AKTN 357
A
Sbjct: 154 ALDE 157
Score = 49.4 bits (119), Expect = 2e-06
Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 41/184 (22%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASY-PFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+ +VG PN GKST L + + S P TT K G++T ++ D PGL +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRR-QIVFVDTPGLHKP 68
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKE----LELYK 541
+G + V V+ + V+ E K
Sbjct: 69 MDA---LGEFMDQEVYEA---LADVNAVVW----------VVDLRHPPTPEDELVARALK 112
Query: 542 MNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPIS 601
+ + PI+L+ NK+ D ++ + Y E +S
Sbjct: 113 PLVGKVPILLVGNKL-------------DAAKYPEEAMKAYHELLP------EAEPRMLS 153
Query: 602 AKTN 605
A
Sbjct: 154 ALDE 157
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 45.9 bits (109), Expect = 9e-06
Identities = 30/188 (15%), Positives = 66/188 (35%), Gaps = 45/188 (23%)
Query: 182 VGFPNAGKSTFLKAISRARPK--------IASYPFTTIKPNVGVITFDDFR----KMSVA 229
G +GK+T LK I P+ +A+ T+ + + + + + +
Sbjct: 20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLY 79
Query: 230 DLPGLIEGAHRNLGMGHQFLRHV-ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKE 288
+PG + + + + I + D +L R+ E++ + +
Sbjct: 80 TVPG--QVFYNAS------RKLILRGVDGIVFVADSAPNRL------RANAESMRNMREN 125
Query: 289 LELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQS 348
L Y + L + PI++ VNK D+ A + + +R + + +
Sbjct: 126 LAEYGLTLDDVPIVIQVNKRDLPDALPV-EMVRAVV-DPEGKFP---------------- 167
Query: 349 ILPISAKT 356
+L A
Sbjct: 168 VLEAVATE 175
Score = 45.9 bits (109), Expect = 9e-06
Identities = 30/188 (15%), Positives = 66/188 (35%), Gaps = 45/188 (23%)
Query: 430 VGFPNAGKSTFLKAISRARPK--------IASYPFTTIKPNVGVITFDDFR----KMSVA 477
G +GK+T LK I P+ +A+ T+ + + + + + +
Sbjct: 20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLY 79
Query: 478 DLPGLIEGAHRNLGMGHQFLRHV-ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKE 536
+PG + + + + I + D +L R+ E++ + +
Sbjct: 80 TVPG--QVFYNAS------RKLILRGVDGIVFVADSAPNRL------RANAESMRNMREN 125
Query: 537 LELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQS 596
L Y + L + PI++ VNK D+ A + + +R + + +
Sbjct: 126 LAEYGLTLDDVPIVIQVNKRDLPDALPV-EMVRAVV-DPEGKFP---------------- 167
Query: 597 ILPISAKT 604
+L A
Sbjct: 168 VLEAVATE 175
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 44.4 bits (106), Expect = 2e-05
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 233
I L+G PN GKST A++ I ++P T++ G ++ K V DLPG
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLT 64
Query: 234 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL- 289
+ E R+ ++ + E+ L+ IVD + +E L L +L
Sbjct: 65 ANSIDEIIARD------YIIN-EKPDLVVNIVDA------------TALERNLYLTLQLM 105
Query: 290 ELYKMNLLEKPIILLVNKMDV 310
E + ++L +NKMD+
Sbjct: 106 E------MGANLLLALNKMDL 120
Score = 44.4 bits (106), Expect = 2e-05
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 481
I L+G PN GKST A++ I ++P T++ G ++ K V DLPG
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLT 64
Query: 482 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL- 537
+ E R+ ++ + E+ L+ IVD + +E L L +L
Sbjct: 65 ANSIDEIIARD------YIIN-EKPDLVVNIVDA------------TALERNLYLTLQLM 105
Query: 538 ELYKMNLLEKPIILLVNKMDV 558
E + ++L +NKMD+
Sbjct: 106 E------MGANLLLALNKMDL 120
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 43.7 bits (104), Expect = 4e-05
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 233
I L+G PN GKST A++ I ++P T++ G ++ K V DLPG
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLT 68
Query: 234 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL- 289
+ E R+ ++ + E+ L+ IVD + +E L L +L
Sbjct: 69 ANSIDEIIARD------YIIN-EKPDLVVNIVDA------------TALERNLYLTLQLM 109
Query: 290 ELYKMNLLEKPIILLVNKMDV 310
E + ++L +NKMD+
Sbjct: 110 E------MGANLLLALNKMDL 124
Score = 43.7 bits (104), Expect = 4e-05
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 481
I L+G PN GKST A++ I ++P T++ G ++ K V DLPG
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLT 68
Query: 482 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL- 537
+ E R+ ++ + E+ L+ IVD + +E L L +L
Sbjct: 69 ANSIDEIIARD------YIIN-EKPDLVVNIVDA------------TALERNLYLTLQLM 109
Query: 538 ELYKMNLLEKPIILLVNKMDV 558
E + ++L +NKMD+
Sbjct: 110 E------MGANLLLALNKMDL 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 44.6 bits (106), Expect = 4e-05
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 233
+ LVG PN GK+T A++ R + ++P T++ G++ + + ++ V DLPG
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLT 64
Query: 234 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE 290
+ E RN F+ +I IVD +C+ L L EL
Sbjct: 65 AHSIDELIARN------FILD-GNADVIVDIVDS------------TCLMRNLFLTLEL- 104
Query: 291 LYKMNLLEKPIILLVNKMDV 310
+ K IIL++NK D+
Sbjct: 105 ---FEMEVKNIILVLNKFDL 121
Score = 44.6 bits (106), Expect = 4e-05
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 481
+ LVG PN GK+T A++ R + ++P T++ G++ + + ++ V DLPG
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLT 64
Query: 482 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELE 538
+ E RN F+ +I IVD +C+ L L EL
Sbjct: 65 AHSIDELIARN------FILD-GNADVIVDIVDS------------TCLMRNLFLTLEL- 104
Query: 539 LYKMNLLEKPIILLVNKMDV 558
+ K IIL++NK D+
Sbjct: 105 ---FEMEVKNIILVLNKFDL 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 44.6 bits (106), Expect = 5e-05
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 25/138 (18%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL--IE 236
IGL+G PN+GK+T ++ +R ++ ++ T++ G + D ++++ DLPG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLT 64
Query: 237 GAHRNLGMGHQFLRHV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL-ELY 292
+ Q H L+ +VD S +E L L +L E
Sbjct: 65 TISSQTSLDEQIACHYILSGDADLLINVVDA------------SNLERNLYLTLQLLE-- 110
Query: 293 KMNLLEKPIILLVNKMDV 310
L P I+ +N +D+
Sbjct: 111 ----LGIPCIVALNMLDI 124
Score = 44.6 bits (106), Expect = 5e-05
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 25/138 (18%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL--IE 484
IGL+G PN+GK+T ++ +R ++ ++ T++ G + D ++++ DLPG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLT 64
Query: 485 GAHRNLGMGHQFLRHV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL-ELY 540
+ Q H L+ +VD S +E L L +L E
Sbjct: 65 TISSQTSLDEQIACHYILSGDADLLINVVDA------------SNLERNLYLTLQLLE-- 110
Query: 541 KMNLLEKPIILLVNKMDV 558
L P I+ +N +D+
Sbjct: 111 ----LGIPCIVALNMLDI 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 44.2 bits (105), Expect = 6e-05
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 35/141 (24%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 233
+ L G PN GK++ A++ + +A++P T++ GV T+ +++ DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-YTINLIDLPGTYSLG 66
Query: 234 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL- 289
+ E R+ +L L+ ++ D E L L E+
Sbjct: 67 YSSIDEKIARD------YLLK-GDADLVILVADS------------VNPEQSLYLLLEIL 107
Query: 290 ELYKMNLLEKPIILLVNKMDV 310
E +EK +IL + +D
Sbjct: 108 E------MEKKVILAMTAIDE 122
Score = 44.2 bits (105), Expect = 6e-05
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 35/141 (24%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 481
+ L G PN GK++ A++ + +A++P T++ GV T+ +++ DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-YTINLIDLPGTYSLG 66
Query: 482 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL- 537
+ E R+ +L L+ ++ D E L L E+
Sbjct: 67 YSSIDEKIARD------YLLK-GDADLVILVADS------------VNPEQSLYLLLEIL 107
Query: 538 ELYKMNLLEKPIILLVNKMDV 558
E +EK +IL + +D
Sbjct: 108 E------MEKKVILAMTAIDE 122
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 44.7 bits (105), Expect = 6e-05
Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 17/157 (10%)
Query: 179 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+ L+G GKS+ K + +P Y +T P+ + F ++V +LPG +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS--LEHFSTLIDLAVMELPGQLNY 59
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 297
+ F + + ++D + +E +N +
Sbjct: 60 FEPSYDSERLF----KSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSI-------- 107
Query: 298 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334
I +L++K+D D RD + + + +
Sbjct: 108 --NIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142
Score = 44.7 bits (105), Expect = 6e-05
Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 17/157 (10%)
Query: 427 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+ L+G GKS+ K + +P Y +T P+ + F ++V +LPG +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS--LEHFSTLIDLAVMELPGQLNY 59
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545
+ F + + ++D + +E +N +
Sbjct: 60 FEPSYDSERLF----KSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSI-------- 107
Query: 546 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582
I +L++K+D D RD + + + +
Sbjct: 108 --NIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 43.2 bits (102), Expect = 8e-05
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 23/155 (14%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 240
+ G N+GK++ L ++ + + +P D +++ D PG H
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADY--DGSGVTLVDFPG-----HV 102
Query: 241 NL--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 298
L + + K + +VD + T L L + + +
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDP-------KKLTTTAEFLVDILSITESSCEN 155
Query: 299 K-PIILLVNKMDVEGA---QEIYDGIRDTLHNLKD 329
I++ NK ++ A +I D + + + +
Sbjct: 156 GIDILIACNKSELFTARPPSKIKDALESEIQKVIE 190
Score = 43.2 bits (102), Expect = 8e-05
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 23/155 (14%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488
+ G N+GK++ L ++ + + +P D +++ D PG H
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADY--DGSGVTLVDFPG-----HV 102
Query: 489 NL--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 546
L + + K + +VD + T L L + + +
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDP-------KKLTTTAEFLVDILSITESSCEN 155
Query: 547 K-PIILLVNKMDVEGA---QEIYDGIRDTLHNLKD 577
I++ NK ++ A +I D + + + +
Sbjct: 156 GIDILIACNKSELFTARPPSKIKDALESEIQKVIE 190
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 43.0 bits (102), Expect = 1e-04
Identities = 38/262 (14%), Positives = 79/262 (30%), Gaps = 72/262 (27%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL--IE 236
L+G PN GK+T A++ A ++ ++P T++ G + + + DLPG+ +
Sbjct: 4 ALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLV 62
Query: 237 GAHRNLGMGHQFLRHV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL-ELY 292
+ Q I ++D +E L L +L E
Sbjct: 63 ANAEGISQDEQIAAQSVIDLEYDCIINVIDA------------CHLERHLYLTSQLFE-- 108
Query: 293 KMNLLEKPIILLVNKMDV-----------------------------EGAQEIYDGIRDT 323
L KP+++ +N MD+ G + +
Sbjct: 109 ----LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164
Query: 324 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDV-----------NDAKLKIRSIL 372
+K ++++ + + D + ++
Sbjct: 165 SQKIKPLKLSLSVAA--QQILN--DLENQLISKGYKNSFAYYFSRRLAEGDTLIGEKAFT 220
Query: 373 DLLAEEEQEMVDRELELDSIII 394
+ L + QE LD ++
Sbjct: 221 ESLLIKLQETEQ---NLDVLLA 239
Score = 42.3 bits (100), Expect = 2e-04
Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 54/198 (27%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGL--IE 484
L+G PN GK+T A++ A ++ ++P T++ G + + + DLPG+ +
Sbjct: 4 ALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLV 62
Query: 485 GAHRNLGMGHQFLRHV---ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL-ELY 540
+ Q I ++D +E L L +L E
Sbjct: 63 ANAEGISQDEQIAAQSVIDLEYDCIINVIDA------------CHLERHLYLTSQLFE-- 108
Query: 541 KMNLLEKPIILLVNKMDV-----------------------------EGAQEIYDGIRDT 571
L KP+++ +N MD+ G + +
Sbjct: 109 ----LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164
Query: 572 LHNLKDHIHKYPEEFQPE 589
+K Q
Sbjct: 165 SQKIKPLKLSLSVAAQQI 182
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 43.0 bits (102), Expect = 2e-04
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 44/189 (23%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238
IG+VG+ N+GK++ +++ K+ + FTT+ P I ++ RK+ + D G I
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFI--- 237
Query: 239 HRNLGMGHQ----F---LRHVERTKLIAMIVDVNGFQLGLKHPKR----SCVETVLLLNK 287
R + Q F L + + + +++D +L +
Sbjct: 238 -RGI--PPQIVDAFFVTLSEAKYSDALILVIDST-----FSENLLIETLQSSFEIL---R 286
Query: 288 ELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQ 347
E+ + KPI++ +NK+D ++ E+ E
Sbjct: 287 EIG-----VSGKPILVTLNKIDK-------------INGDLYKKLDLVEKLSKELYSPIF 328
Query: 348 SILPISAKT 356
++PISA
Sbjct: 329 DVIPISALK 337
Score = 43.0 bits (102), Expect = 2e-04
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 44/189 (23%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486
IG+VG+ N+GK++ +++ K+ + FTT+ P I ++ RK+ + D G I
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFI--- 237
Query: 487 HRNLGMGHQ----F---LRHVERTKLIAMIVDVNGFQLGLKHPKR----SCVETVLLLNK 535
R + Q F L + + + +++D +L +
Sbjct: 238 -RGI--PPQIVDAFFVTLSEAKYSDALILVIDST-----FSENLLIETLQSSFEIL---R 286
Query: 536 ELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQ 595
E+ + KPI++ +NK+D ++ E+ E
Sbjct: 287 EIG-----VSGKPILVTLNKIDK-------------INGDLYKKLDLVEKLSKELYSPIF 328
Query: 596 SILPISAKT 604
++PISA
Sbjct: 329 DVIPISALK 337
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 41.7 bits (98), Expect = 3e-04
Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 35/193 (18%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 240
+ G N+GK++ L ++ + + +P D +++ D PG H
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADY--DGSGVTLVDFPG-----HV 66
Query: 241 NL--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 298
L + + K + +VD L + E ++ + E N
Sbjct: 67 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL----TTTAEFLVDILSITESSCEN--G 120
Query: 299 KPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK 355
I++ NK ++ A +I D + + + + + +S+ + K
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIER--------------RKKSLNEVERK 166
Query: 356 TNSTDVNDAKLKI 368
N D + L +
Sbjct: 167 INEEDYAENTLDV 179
Score = 41.7 bits (98), Expect = 3e-04
Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 35/193 (18%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGAHR 488
+ G N+GK++ L ++ + + +P D +++ D PG H
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADY--DGSGVTLVDFPG-----HV 66
Query: 489 NL--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLLE 546
L + + K + +VD L + E ++ + E N
Sbjct: 67 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL----TTTAEFLVDILSITESSCEN--G 120
Query: 547 KPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK 603
I++ NK ++ A +I D + + + + + +S+ + K
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIER--------------RKKSLNEVERK 166
Query: 604 TNSTDVNDAKLKI 616
N D + L +
Sbjct: 167 INEEDYAENTLDV 179
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 41.5 bits (98), Expect = 5e-04
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 36/141 (25%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 233
I L+G PN+GK++ I+ ++ ++P T++ G++ + + + + DLPG
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGIYSMS 63
Query: 234 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL- 289
R+ +L +R I +VD + +E L L +L
Sbjct: 64 PYSPEAKVARD------YLLS-QRADSILNVVDA------------TNLERNLYLTTQLI 104
Query: 290 ELYKMNLLEKPIILLVNKMDV 310
E P+ + +N +DV
Sbjct: 105 E------TGIPVTIALNMIDV 119
Score = 41.5 bits (98), Expect = 5e-04
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 36/141 (25%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----- 481
I L+G PN+GK++ I+ ++ ++P T++ G++ + + + + DLPG
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN--KDLEIQDLPGIYSMS 63
Query: 482 ---LIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL- 537
R+ +L +R I +VD + +E L L +L
Sbjct: 64 PYSPEAKVARD------YLLS-QRADSILNVVDA------------TNLERNLYLTTQLI 104
Query: 538 ELYKMNLLEKPIILLVNKMDV 558
E P+ + +N +DV
Sbjct: 105 E------TGIPVTIALNMIDV 119
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 41.9 bits (98), Expect = 5e-04
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 178 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV--GVITFDDFRKMSVADLPGLI 235
D+ +VG N GKSTF+ I + T+ P +I ++ D PG+I
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII 223
Query: 236 EGAHRNLGMGHQFLRHVERTKLI 258
+ + L+ + + I
Sbjct: 224 NHHQMAHFVDARDLKIITPKREI 246
Score = 41.9 bits (98), Expect = 5e-04
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 426 DIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNV--GVITFDDFRKMSVADLPGLI 483
D+ +VG N GKSTF+ I + T+ P +I ++ D PG+I
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII 223
Query: 484 EGAHRNLGMGHQFLRHVERTKLI 506
+ + L+ + + I
Sbjct: 224 NHHQMAHFVDARDLKIITPKREI 246
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 41.6 bits (97), Expect = 6e-04
Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 34/240 (14%)
Query: 426 DIGLVGFPNAGKSTFLKAISRARPK-----IASYPFTTIKPNVGVITFDDFRKMSVADLP 480
++ + G +GKS+F+ + + T++ + + + DLP
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLP 128
Query: 481 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY 540
G+ +L ++ + I+ T N
Sbjct: 129 GIGSTNFP----PDTYLEKMKFYEYDFFIIISA---------------TRFKKNDIDIAK 169
Query: 541 KMNLLEKPIILLVNKMDVEGAQEIYDGIRDT-LHNLKDHIHKYPEEFQPEKVIKFQSILP 599
+++++K + K+D + E + + I E I I
Sbjct: 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 229
Query: 600 ISAKTNSTDVNDAKLKIRSILDLLAEEEQEMV-----DRELELVKKLKSSLREHQGEMII 654
+S K + L + ++ L ++ + +++K + L++
Sbjct: 230 LSNKNVC-HYDFPVL-MDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGF 287
Score = 40.5 bits (94), Expect = 0.001
Identities = 24/185 (12%), Positives = 54/185 (29%), Gaps = 27/185 (14%)
Query: 178 DIGLVGFPNAGKSTFLKAISRARPK-----IASYPFTTIKPNVGVITFDDFRKMSVADLP 232
++ + G +GKS+F+ + + T++ + + + DLP
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLP 128
Query: 233 GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELY 292
G+ +L ++ + I+ T N
Sbjct: 129 GIGSTNFP----PDTYLEKMKFYEYDFFIIISA---------------TRFKKNDIDIAK 169
Query: 293 KMNLLEKPIILLVNKMDVEGAQEIYDGIRDT-LHNLKDHIHKYPEEFQPEKVIKFQSILP 351
+++++K + K+D + E + + I E I I
Sbjct: 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 229
Query: 352 ISAKT 356
+S K
Sbjct: 230 LSNKN 234
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 41.3 bits (98), Expect = 9e-04
Identities = 51/271 (18%), Positives = 88/271 (32%), Gaps = 79/271 (29%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+ +VG PN GKST + + + I T P + + + + D G+ +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGVFDN 62
Query: 238 AHRNL--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 295
+ M L + L+ +VD + G+ S + L K
Sbjct: 63 PQDIISQKMKEVTLNMIREADLVLFVVDG---KRGITKEDESLADF---------LRKST 110
Query: 296 LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAK 355
IL+ NK E +E ++ L++L F +P+SA+
Sbjct: 111 ---VDTILVANK--AENLREFEREVKPELYSL-----------------GFGEPIPVSAE 148
Query: 356 --TNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGE 413
N + + I+ L E+ ++ + D+I +A
Sbjct: 149 HNINLDTMLET------IIKKLEEKGLDLESKPEITDAIKVA------------------ 184
Query: 414 ELAVRLELKLIADIGLVGFPNAGKSTFLKAI 444
+VG PN GKST AI
Sbjct: 185 ---------------IVGRPNVGKSTLFNAI 200
Score = 28.2 bits (64), Expect = 9.5
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 21/152 (13%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+ +VG PN GKST + + + I T P + + + + D G+ +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGVFDN 62
Query: 486 AHRNL--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 543
+ M L + L+ +VD + G+ S + L K
Sbjct: 63 PQDIISQKMKEVTLNMIREADLVLFVVDG---KRGITKEDESLADF---------LRKST 110
Query: 544 LLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 575
IL+ NK E +E ++ L++L
Sbjct: 111 ---VDTILVANK--AENLREFEREVKPELYSL 137
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 40.7 bits (95), Expect = 0.001
Identities = 36/216 (16%), Positives = 65/216 (30%), Gaps = 73/216 (33%)
Query: 298 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 357
++L+ NK D+ D + + + +K + + ISA
Sbjct: 96 NNKVLLVGNKADLIPKS-----------VKHDKVKHWMRYSAKQLGLKPEDVFLISAAKG 144
Query: 358 STDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNAQNGWLGRKGEELAV 417
I + D + + G+
Sbjct: 145 --------QGIAELADAI----------------------------EYYRGGK------- 161
Query: 418 RLELKLIADIGLVGFPNAGKSTFLKAI-------SRARPKIASYPFTTIKPNVGVITFDD 470
D+ +VG N GKSTF+ + + + +P TT + +I
Sbjct: 162 --------DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT----LDLIDIPL 209
Query: 471 FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLI 506
+ S+ D PG+I +G Q L+ + TK I
Sbjct: 210 DEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEI 245
Score = 38.4 bits (89), Expect = 0.006
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 178 DIGLVGFPNAGKSTFLKAI-------SRARPKIASYPFTTIKPNVGVITFDDFRKMSVAD 230
D+ +VG N GKSTF+ + + + +P TT + +I + S+ D
Sbjct: 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT----LDLIDIPLDEESSLYD 217
Query: 231 LPGLIEGAHRNLGMGHQFLRHVERTKLI 258
PG+I +G Q L+ + TK I
Sbjct: 218 TPGIINHHQMAHYVGKQSLKLITPTKEI 245
Score = 29.2 bits (65), Expect = 4.6
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 11/60 (18%)
Query: 546 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 605
++L+ NK D+ D + + + +K + + ISA
Sbjct: 96 NNKVLLVGNKADLIPKS-----------VKHDKVKHWMRYSAKQLGLKPEDVFLISAAKG 144
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 39.6 bits (93), Expect = 0.001
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 42/166 (25%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGL 234
I +VG AGK+T L K+ T P NV + + + +V D+ G
Sbjct: 32 ILMVGLDAAGKTTILY-------KLKLGEIVTTIPTIGFNVETVEYKNI-CFTVWDVGG- 82
Query: 235 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM 294
+ R L H F + T+ + +VD S + + + EL KM
Sbjct: 83 -QDKIRPL-WRHYF----QNTQGLIFVVD-------------SNDRERVQESAD-ELQKM 122
Query: 295 ----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHK 333
L + +++ NK D+ A E+ D + L +L+
Sbjct: 123 LQEDELRDAVLLVFANKQDMPNAMPVSELTDKLG--LQHLRSRTWY 166
Score = 39.6 bits (93), Expect = 0.001
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 42/166 (25%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGL 482
I +VG AGK+T L K+ T P NV + + + +V D+ G
Sbjct: 32 ILMVGLDAAGKTTILY-------KLKLGEIVTTIPTIGFNVETVEYKNI-CFTVWDVGG- 82
Query: 483 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM 542
+ R L H F + T+ + +VD S + + + EL KM
Sbjct: 83 -QDKIRPL-WRHYF----QNTQGLIFVVD-------------SNDRERVQESAD-ELQKM 122
Query: 543 ----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHK 581
L + +++ NK D+ A E+ D + L +L+
Sbjct: 123 LQEDELRDAVLLVFANKQDMPNAMPVSELTDKLG--LQHLRSRTWY 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 39.6 bits (92), Expect = 0.002
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 10/158 (6%)
Query: 179 IGLVGFPNAGKSTFLKAI--SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIE 236
I LVG AGKS +I + + T K ++ + ++ V D PG+ +
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPGIFD 90
Query: 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL 296
N + +R + T + L + R E K L+++
Sbjct: 91 TEVPNAETSKEIIRCILLTSP-----GPHAL-LLVVPLGRYTEEEHKATEKILKMFGERA 144
Query: 297 LEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 334
+IL+ + D G ++D +R+ +++D + +
Sbjct: 145 R-SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181
Score = 39.6 bits (92), Expect = 0.002
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 10/158 (6%)
Query: 427 IGLVGFPNAGKSTFLKAI--SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIE 484
I LVG AGKS +I + + T K ++ + ++ V D PG+ +
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPGIFD 90
Query: 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL 544
N + +R + T + L + R E K L+++
Sbjct: 91 TEVPNAETSKEIIRCILLTSP-----GPHAL-LLVVPLGRYTEEEHKATEKILKMFGERA 144
Query: 545 LEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKY 582
+IL+ + D G ++D +R+ +++D + +
Sbjct: 145 R-SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 38.8 bits (91), Expect = 0.002
Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 57/188 (30%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 236
+VG NAGK+T L + + P NV I ++ + + D+ G +
Sbjct: 21 IVGLDNAGKTTILY-------QFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGG--Q 70
Query: 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 294
+ R+ + T+ + ++VD S + + +E ELYKM
Sbjct: 71 ESLRSS-WNTYY----TNTEFVIVVVD-------------STDRERISVTRE-ELYKMLA 111
Query: 295 --NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSI 349
+L + +++ NK DV+ EI ++ L ++KDH I
Sbjct: 112 HEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTSIKDHQWH---------------I 154
Query: 350 LPISAKTN 357
A T
Sbjct: 155 QACCALTG 162
Score = 38.8 bits (91), Expect = 0.002
Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 57/188 (30%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 484
+VG NAGK+T L + + P NV I ++ + + D+ G +
Sbjct: 21 IVGLDNAGKTTILY-------QFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGG--Q 70
Query: 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 542
+ R+ + T+ + ++VD S + + +E ELYKM
Sbjct: 71 ESLRSS-WNTYY----TNTEFVIVVVD-------------STDRERISVTRE-ELYKMLA 111
Query: 543 --NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSI 597
+L + +++ NK DV+ EI ++ L ++KDH I
Sbjct: 112 HEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTSIKDHQWH---------------I 154
Query: 598 LPISAKTN 605
A T
Sbjct: 155 QACCALTG 162
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 37.9 bits (89), Expect = 0.003
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 44/162 (27%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 236
+VG AGK+T L K+ T P NV + + + +V D+ G +
Sbjct: 5 MVGLDAAGKTTILY-------KLKLGEIVTTIPTIGFNVETVEYKNI-SFTVWDVGG--Q 54
Query: 237 GAHRNLGMGHQFLRH-VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM- 294
R L RH + T+ + +VD S + +E EL +M
Sbjct: 55 DKIRPL------WRHYFQNTQGLIFVVD-------------SNDRERVNEARE-ELMRML 94
Query: 295 ---NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
L + +++ NK D+ A EI D + LH+L+
Sbjct: 95 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRHR 134
Score = 37.9 bits (89), Expect = 0.003
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 44/162 (27%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 484
+VG AGK+T L K+ T P NV + + + +V D+ G +
Sbjct: 5 MVGLDAAGKTTILY-------KLKLGEIVTTIPTIGFNVETVEYKNI-SFTVWDVGG--Q 54
Query: 485 GAHRNLGMGHQFLRH-VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM- 542
R L RH + T+ + +VD S + +E EL +M
Sbjct: 55 DKIRPL------WRHYFQNTQGLIFVVD-------------SNDRERVNEARE-ELMRML 94
Query: 543 ---NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
L + +++ NK D+ A EI D + LH+L+
Sbjct: 95 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRHR 134
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 38.0 bits (89), Expect = 0.004
Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 67/211 (31%)
Query: 158 GWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP---- 213
G + R +E V +I VG NAGK+T L + + P
Sbjct: 13 GLVPRGSQEHKV-----II-----VGLDNAGKTTILY-------QFSMNEVVHTSPTIGS 55
Query: 214 NVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH 273
NV I ++ + + D+ G + + R+ + T+ + ++VD
Sbjct: 56 NVEEIVINNT-RFLMWDIGG--QESLRSS-WNTYY----TNTEFVIVVVD---------- 97
Query: 274 PKRSCVETVLLLNKELELYKM----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHN 326
S + + +E ELYKM +L + +++ NK DV+ EI ++ L +
Sbjct: 98 ---STDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTS 151
Query: 327 LKDHIHKYPEEFQPEKVIKFQSILPISAKTN 357
+KDH I A T
Sbjct: 152 IKDHQWH---------------IQACCALTG 167
Score = 38.0 bits (89), Expect = 0.004
Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 67/211 (31%)
Query: 406 GWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP---- 461
G + R +E V +I VG NAGK+T L + + P
Sbjct: 13 GLVPRGSQEHKV-----II-----VGLDNAGKTTILY-------QFSMNEVVHTSPTIGS 55
Query: 462 NVGVITFDDFRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKH 521
NV I ++ + + D+ G + + R+ + T+ + ++VD
Sbjct: 56 NVEEIVINNT-RFLMWDIGG--QESLRSS-WNTYY----TNTEFVIVVVD---------- 97
Query: 522 PKRSCVETVLLLNKELELYKM----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHN 574
S + + +E ELYKM +L + +++ NK DV+ EI ++ L +
Sbjct: 98 ---STDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTS 151
Query: 575 LKDHIHKYPEEFQPEKVIKFQSILPISAKTN 605
+KDH I A T
Sbjct: 152 IKDHQWH---------------IQACCALTG 167
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 37.6 bits (88), Expect = 0.005
Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 42/161 (26%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 236
++G NAGK+T LK K TI P N+ + F K+++ D+ G +
Sbjct: 23 MLGLDNAGKTTILK-------KFNGEDVDTISPTLGFNIKTLEHRGF-KLNIWDVGG--Q 72
Query: 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 294
+ R+ + F E T + +VD S + + EL +
Sbjct: 73 KSLRSY-WRNYF----ESTDGLIWVVD-------------SADRQRMQDCQR-ELQSLLV 113
Query: 295 --NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
L +++ NK D+ GA I + + L +++ H
Sbjct: 114 EERLAGATLLIFANKQDLPGALSCNAIQEALE--LDSIRSH 152
Score = 37.6 bits (88), Expect = 0.005
Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 42/161 (26%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 484
++G NAGK+T LK K TI P N+ + F K+++ D+ G +
Sbjct: 23 MLGLDNAGKTTILK-------KFNGEDVDTISPTLGFNIKTLEHRGF-KLNIWDVGG--Q 72
Query: 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 542
+ R+ + F E T + +VD S + + EL +
Sbjct: 73 KSLRSY-WRNYF----ESTDGLIWVVD-------------SADRQRMQDCQR-ELQSLLV 113
Query: 543 --NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
L +++ NK D+ GA I + + L +++ H
Sbjct: 114 EERLAGATLLIFANKQDLPGALSCNAIQEALE--LDSIRSH 152
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 37.6 bits (88), Expect = 0.005
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 42/163 (25%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 236
+G N+GK+T + + K ++ I P ++ +V D+ G +
Sbjct: 26 CLGLDNSGKTTIINKL-----KPSNAQSQNILPTIGFSIEKFKSSSL-SFTVFDMSG--Q 77
Query: 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 294
G +RNL H + + + I ++D S +++ KE EL +
Sbjct: 78 GRYRNL-WEHYY----KEGQAIIFVID-------------SSDRLRMVVAKE-ELDTLLN 118
Query: 295 --NLLEKPIILLV--NKMDVEGA---QEIYDGIRDTLHNLKDH 330
++ + I +L NKMD+ A ++ + L N+KD
Sbjct: 119 HPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC--LENIKDK 159
Score = 37.6 bits (88), Expect = 0.005
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 42/163 (25%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 484
+G N+GK+T + + K ++ I P ++ +V D+ G +
Sbjct: 26 CLGLDNSGKTTIINKL-----KPSNAQSQNILPTIGFSIEKFKSSSL-SFTVFDMSG--Q 77
Query: 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 542
G +RNL H + + + I ++D S +++ KE EL +
Sbjct: 78 GRYRNL-WEHYY----KEGQAIIFVID-------------SSDRLRMVVAKE-ELDTLLN 118
Query: 543 --NLLEKPIILLV--NKMDVEGA---QEIYDGIRDTLHNLKDH 578
++ + I +L NKMD+ A ++ + L N+KD
Sbjct: 119 HPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC--LENIKDK 159
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 37.7 bits (87), Expect = 0.008
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLP-GLIEGAH 239
+G P +GKST+ + P I DD+R+ +A +
Sbjct: 7 TIGCPGSGKSTWAREFIAKN------------PGFYNINRDDYRQSIMAHEERDEYKYTK 54
Query: 240 RNLGMGHQFLRHVERTKLIAM------IVD 263
+ G+ ++ L I+
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIIS 84
Score = 37.7 bits (87), Expect = 0.008
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLP-GLIEGAH 487
+G P +GKST+ + P I DD+R+ +A +
Sbjct: 7 TIGCPGSGKSTWAREFIAKN------------PGFYNINRDDYRQSIMAHEERDEYKYTK 54
Query: 488 RNLGMGHQFLRHVERTKLIAM------IVD 511
+ G+ ++ L I+
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIIS 84
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 36.8 bits (86), Expect = 0.009
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 42/161 (26%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 236
L+G NAGK+T LK ++AS + I P N+ + F K++V D+ G +
Sbjct: 21 LLGLDNAGKTTLLK-------QLASEDISHITPTQGFNIKSVQSQGF-KLNVWDIGG--Q 70
Query: 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 294
R F E T ++ ++D S + EL ++
Sbjct: 71 RKIRPY-WRSYF----ENTDILIYVID-------------SADRKRFEETGQ-ELTELLE 111
Query: 295 --NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
L P+++ NK D+ A EI +G+ LH ++D
Sbjct: 112 EEKLSCVPVLIFANKQDLLTAAPASEIAEGLN--LHTIRDR 150
Score = 36.8 bits (86), Expect = 0.009
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 42/161 (26%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 484
L+G NAGK+T LK ++AS + I P N+ + F K++V D+ G +
Sbjct: 21 LLGLDNAGKTTLLK-------QLASEDISHITPTQGFNIKSVQSQGF-KLNVWDIGG--Q 70
Query: 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 542
R F E T ++ ++D S + EL ++
Sbjct: 71 RKIRPY-WRSYF----ENTDILIYVID-------------SADRKRFEETGQ-ELTELLE 111
Query: 543 --NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
L P+++ NK D+ A EI +G+ LH ++D
Sbjct: 112 EEKLSCVPVLIFANKQDLLTAAPASEIAEGLN--LHTIRDR 150
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 36.3 bits (84), Expect = 0.020
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 179 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+ ++G GKS+ + ++ +++ + ++P + T +++ D PGL+E
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-FTINIIDTPGLVEA 97
Query: 238 AHRN 241
+ N
Sbjct: 98 GYVN 101
Score = 36.3 bits (84), Expect = 0.020
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 427 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+ ++G GKS+ + ++ +++ + ++P + T +++ D PGL+E
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-FTINIIDTPGLVEA 97
Query: 486 AHRN 489
+ N
Sbjct: 98 GYVN 101
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 35.1 bits (81), Expect = 0.030
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRK-MSVADLPGLIEGAH 239
+G P +GKST+ + P I DD+R+ + + +
Sbjct: 7 TIGCPGSGKSTWAREFIAKN------------PGFYNINRDDYRQSIMAHEERDEYKYTK 54
Query: 240 RNLGMGHQFLRHVERTKLIAM------IVD 263
+ G+ ++ L I+
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIIS 84
Score = 35.1 bits (81), Expect = 0.030
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRK-MSVADLPGLIEGAH 487
+G P +GKST+ + P I DD+R+ + + +
Sbjct: 7 TIGCPGSGKSTWAREFIAKN------------PGFYNINRDDYRQSIMAHEERDEYKYTK 54
Query: 488 RNLGMGHQFLRHVERTKLIAM------IVD 511
+ G+ ++ L I+
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIIS 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 35.2 bits (82), Expect = 0.031
Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 35/160 (21%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238
+ LVG +GK+TF+ I+ + P T+ N+ IT + + + D+ G +
Sbjct: 25 LTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNV-TIKLWDIGG--QPR 79
Query: 239 HRNLGMGHQFLRH-VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--- 294
R++ I +VD + + + +K EL+ +
Sbjct: 80 FRSM------WERYCRGVSAIVYMVD-------------AADQEKIEASKN-ELHNLLDK 119
Query: 295 -NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
L P+++L NK D+ GA +E+ + + L ++D
Sbjct: 120 PQLQGIPVLVLGNKRDLPGALDEKELIEKMN--LSAIQDR 157
Score = 35.2 bits (82), Expect = 0.031
Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 35/160 (21%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486
+ LVG +GK+TF+ I+ + P T+ N+ IT + + + D+ G +
Sbjct: 25 LTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNV-TIKLWDIGG--QPR 79
Query: 487 HRNLGMGHQFLRH-VERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM--- 542
R++ I +VD + + + +K EL+ +
Sbjct: 80 FRSM------WERYCRGVSAIVYMVD-------------AADQEKIEASKN-ELHNLLDK 119
Query: 543 -NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
L P+++L NK D+ GA +E+ + + L ++D
Sbjct: 120 PQLQGIPVLVLGNKRDLPGALDEKELIEKMN--LSAIQDR 157
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 34.9 bits (81), Expect = 0.036
Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 42/165 (25%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGL 234
I ++G AGK+T L ++ T KP NV +++ + K++V DL G
Sbjct: 21 ILILGLDGAGKTTILY-------RLQIGEVVTTKPTIGFNVETLSYKNL-KLNVWDLGG- 71
Query: 235 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM 294
+ + R + T + +VD + + T + EL+ M
Sbjct: 72 -QTSIRPY-WRCYY----ADTAAVIFVVDSTD---------KDRMSTA----SK-ELHLM 111
Query: 295 ----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIH 332
L + +++ NK D GA E+ + L LKD
Sbjct: 112 LQEEELQDAALLVFANKQDQPGALSASEVSKELN--LVELKDRSW 154
Score = 34.9 bits (81), Expect = 0.036
Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 42/165 (25%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGL 482
I ++G AGK+T L ++ T KP NV +++ + K++V DL G
Sbjct: 21 ILILGLDGAGKTTILY-------RLQIGEVVTTKPTIGFNVETLSYKNL-KLNVWDLGG- 71
Query: 483 IEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM 542
+ + R + T + +VD + + T + EL+ M
Sbjct: 72 -QTSIRPY-WRCYY----ADTAAVIFVVDSTD---------KDRMSTA----SK-ELHLM 111
Query: 543 ----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDHIH 580
L + +++ NK D GA E+ + L LKD
Sbjct: 112 LQEEELQDAALLVFANKQDQPGALSASEVSKELN--LVELKDRSW 154
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 34.5 bits (80), Expect = 0.051
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 42/161 (26%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 236
++G AGK+T L ++ T P NV +T+ + K V DL G
Sbjct: 12 ILGLDGAGKTTILY-------RLQVGEVVTTIPTIGFNVETVTYKNL-KFQVWDLGG--L 61
Query: 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 294
+ R + T + +VD SC + ++K EL M
Sbjct: 62 TSIRPY-WRCYY----SNTDAVIYVVD-------------SCDRDRIGISKS-ELVAMLE 102
Query: 295 --NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
L + +++ NK D+E A E+ + + L LKD
Sbjct: 103 EEELRKAILVVFANKQDMEQAMTSSEMANSLG--LPALKDR 141
Score = 34.5 bits (80), Expect = 0.051
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 42/161 (26%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGLIE 484
++G AGK+T L ++ T P NV +T+ + K V DL G
Sbjct: 12 ILGLDGAGKTTILY-------RLQVGEVVTTIPTIGFNVETVTYKNL-KFQVWDLGG--L 61
Query: 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKM-- 542
+ R + T + +VD SC + ++K EL M
Sbjct: 62 TSIRPY-WRCYY----SNTDAVIYVVD-------------SCDRDRIGISKS-ELVAMLE 102
Query: 543 --NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
L + +++ NK D+E A E+ + + L LKD
Sbjct: 103 EEELRKAILVVFANKQDMEQAMTSSEMANSLG--LPALKDR 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.063
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 8/21 (38%)
Query: 626 EEQEMVDRELELVKKLKSSLR 646
E+Q +KKL++SL+
Sbjct: 18 EKQA--------LKKLQASLK 30
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 34.3 bits (79), Expect = 0.074
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 223
+ L G P +GKST ++ A + V+ D F
Sbjct: 25 VALSGAPGSGKSTLSNPLAAA--------LSAQGLPAEVVPMDGF 61
Score = 34.3 bits (79), Expect = 0.074
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 471
+ L G P +GKST ++ A + V+ D F
Sbjct: 25 VALSGAPGSGKSTLSNPLAAA--------LSAQGLPAEVVPMDGF 61
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 34.1 bits (79), Expect = 0.079
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 52/168 (30%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGL 234
+ ++G NAGK++ L ++ T P N+ + + + V DL
Sbjct: 25 VLMLGLDNAGKTSILY-------RLHLGDVVTTVPTVGVNLETLQYKNI-SFEVWDL--- 73
Query: 235 IEGAHRNLGMGHQFLRHV-----ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL 289
G G +R T + +VD S + + K
Sbjct: 74 --------G-GQTGVRPYWRCYFSDTDAVIYVVD-------------STDRDRMGVAKH- 110
Query: 290 ELYKM----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
ELY + L + +++ NK D+ A EI + + + ++ +
Sbjct: 111 ELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLG--VSSIMNR 156
Score = 34.1 bits (79), Expect = 0.079
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 52/168 (30%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKP----NVGVITFDDFRKMSVADLPGL 482
+ ++G NAGK++ L ++ T P N+ + + + V DL
Sbjct: 25 VLMLGLDNAGKTSILY-------RLHLGDVVTTVPTVGVNLETLQYKNI-SFEVWDL--- 73
Query: 483 IEGAHRNLGMGHQFLRHV-----ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKEL 537
G G +R T + +VD S + + K
Sbjct: 74 --------G-GQTGVRPYWRCYFSDTDAVIYVVD-------------STDRDRMGVAKH- 110
Query: 538 ELYKM----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
ELY + L + +++ NK D+ A EI + + + ++ +
Sbjct: 111 ELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLG--VSSIMNR 156
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 34.8 bits (81), Expect = 0.079
Identities = 54/281 (19%), Positives = 84/281 (29%), Gaps = 106/281 (37%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGL--- 234
+ +VG PN GKST I+ R I P GV T D R S A+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTP--------GV-TRD--RIYSSAEWLNYDFN 54
Query: 235 ------IEGAHRNL--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLN 286
I+ + Q ++ +I +V+ + G+ +
Sbjct: 55 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNG---REGVTAADEEVAKI----- 106
Query: 287 KELELYKMNLLEKPIILLVNKMD-VEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIK 345
LY+ KP++L VNK+D E IYD ++L
Sbjct: 107 ----LYRTK---KPVVLAVNKLDNTEMRANIYD-----FYSL-----------------G 137
Query: 346 FQSILPISAK--TNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHGGAGGNA 403
F PIS D+ DA + + + + + I
Sbjct: 138 FGEPYPISGTHGLGLGDLLDA------VAEHFKNIPET----KYNEEVIQFC-------- 179
Query: 404 QNGWLGRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAI 444
L+G PN GKS+ + A+
Sbjct: 180 -------------------------LIGRPNVGKSSLVNAM 195
Score = 32.5 bits (75), Expect = 0.42
Identities = 47/199 (23%), Positives = 70/199 (35%), Gaps = 57/199 (28%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGL--- 482
+ +VG PN GKST I+ R I P GV T D R S A+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTP--------GV-TRD--RIYSSAEWLNYDFN 54
Query: 483 ------IEGAHRNL--GMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLN 534
I+ + Q ++ +I +V+ + G+ +
Sbjct: 55 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNG---REGVTAADEEVAKI----- 106
Query: 535 KELELYKMNLLEKPIILLVNKMD-VEGAQEIYD------------------GIRDTLHNL 575
LY+ KP++L VNK+D E IYD G+ D L +
Sbjct: 107 ----LYRTK---KPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 159
Query: 576 KDHIHKYPEEFQPEKVIKF 594
+H PE E+VI+F
Sbjct: 160 AEHFKNIPETKYNEEVIQF 178
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 33.8 bits (78), Expect = 0.087
Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 39/186 (20%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238
+ +G NAGK+T L + R P T+ P +T + DL G
Sbjct: 28 LVFLGLDNAGKTTLLHMLKDDRL-GQHVP--TLHPTSEELTIAGM-TFTTFDL-G----- 77
Query: 239 HRNLGMGHQFLRHV-----ERTKLIAMIVDVNGFQLGLKHPKR---SCVETVLLLNKELE 290
GH R V I +VD +R S E L+ E
Sbjct: 78 ------GHIQARRVWKNYLPAINGIVFLVDCA-------DHERLLESKEELDSLMTDE-- 122
Query: 291 LYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSIL 350
+ PI++L NK+D A +R+ K + + +
Sbjct: 123 ----TIANVPILILGNKIDRPEAISEER-LREMFGLYGQTTGKGSVSLKELNARPLE-VF 176
Query: 351 PISAKT 356
S
Sbjct: 177 MCSVLK 182
Score = 33.8 bits (78), Expect = 0.087
Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 39/186 (20%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486
+ +G NAGK+T L + R P T+ P +T + DL G
Sbjct: 28 LVFLGLDNAGKTTLLHMLKDDRL-GQHVP--TLHPTSEELTIAGM-TFTTFDL-G----- 77
Query: 487 HRNLGMGHQFLRHV-----ERTKLIAMIVDVNGFQLGLKHPKR---SCVETVLLLNKELE 538
GH R V I +VD +R S E L+ E
Sbjct: 78 ------GHIQARRVWKNYLPAINGIVFLVDCA-------DHERLLESKEELDSLMTDE-- 122
Query: 539 LYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSIL 598
+ PI++L NK+D A +R+ K + + +
Sbjct: 123 ----TIANVPILILGNKIDRPEAISEER-LREMFGLYGQTTGKGSVSLKELNARPLE-VF 176
Query: 599 PISAKT 604
S
Sbjct: 177 MCSVLK 182
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 34.6 bits (80), Expect = 0.11
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 301 IILLVNKMD-VEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISA 354
I++ +NKMD + +++ I+ + I P +P+SA
Sbjct: 160 IVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF---------VPMSA 205
Score = 34.6 bits (80), Expect = 0.11
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 549 IILLVNKMD-VEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISA 602
I++ +NKMD + +++ I+ + I P +P+SA
Sbjct: 160 IVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF---------VPMSA 205
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 34.1 bits (79), Expect = 0.11
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 179 IGLVGFPN-AGKSTFLKAISRARP 201
+ LVG PN AGKST L ++
Sbjct: 29 LHLVG-PNGAGKSTLLARMAGMTS 51
Score = 34.1 bits (79), Expect = 0.11
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 427 IGLVGFPN-AGKSTFLKAISRARP 449
+ LVG PN AGKST L ++
Sbjct: 29 LHLVG-PNGAGKSTLLARMAGMTS 51
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 33.8 bits (77), Expect = 0.13
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 179 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
I ++G GKS+ + +I I+ + +P + + +++ D PGLIEG
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-FTLNIIDTPGLIEG 100
Query: 238 AHRN 241
+ N
Sbjct: 101 GYIN 104
Score = 33.8 bits (77), Expect = 0.13
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 427 IGLVGFPNAGKSTFLKAI-SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
I ++G GKS+ + +I I+ + +P + + +++ D PGLIEG
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-FTLNIIDTPGLIEG 100
Query: 486 AHRN 489
+ N
Sbjct: 101 GYIN 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 33.7 bits (77), Expect = 0.15
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 290 ELYKM----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
EL +M L + +++ NK D+ A EI D + LH+L+
Sbjct: 254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRHR 299
Score = 33.7 bits (77), Expect = 0.15
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 538 ELYKM----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
EL +M L + +++ NK D+ A EI D + LH+L+
Sbjct: 254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRHR 299
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 34.2 bits (79), Expect = 0.16
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 179 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 221
IG+VG PN GK+TF+K ++ +P G + +D
Sbjct: 385 IGIVG-PNGIGKTTFVKMLAGV-----------EEPTEGKVEWD 416
Score = 34.2 bits (79), Expect = 0.16
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 427 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 469
IG+VG PN GK+TF+K ++ +P G + +D
Sbjct: 385 IGIVG-PNGIGKTTFVKMLAGV-----------EEPTEGKVEWD 416
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 33.7 bits (77), Expect = 0.18
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 290 ELYKM----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
EL+++ + + I++ NK D+ A EI + + L ++D
Sbjct: 411 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG--LTRIRDR 456
Score = 33.7 bits (77), Expect = 0.18
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 538 ELYKM----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
EL+++ + + I++ NK D+ A EI + + L ++D
Sbjct: 411 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG--LTRIRDR 456
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 32.9 bits (75), Expect = 0.35
Identities = 44/253 (17%), Positives = 78/253 (30%), Gaps = 55/253 (21%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD------------D---- 470
+G+ G P AGKSTFL+A V VI D D
Sbjct: 59 LGVTGTPGAGKSTFLEAFGML--------LIREGLKVAVIAVDPSSPVTGGSILGDKTRM 110
Query: 471 ----------FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLK 520
R + + G GA + +I V V + +
Sbjct: 111 NDLARAEAAFIRPVPSSGHLG---GASQRARELMLLCEAAGYDVVIVETVGVGQSETEV- 166
Query: 521 HPKRSCVETVLLLNK-----ELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 575
V+ + L +L+ K L+E ++++NK D + + +
Sbjct: 167 ---ARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHM-YESA 222
Query: 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDREL 635
+ + +E+QP +L SA +++ I L + R+
Sbjct: 223 LHILRRKYDEWQPR-------VLTCSALEK-RGIDEIWHAIIDFKTALTASGRLQQVRQQ 274
Query: 636 ELVKKLKSSLREH 648
+ V+ L+ E
Sbjct: 275 QSVEWLRKQTEEE 287
Score = 31.7 bits (72), Expect = 0.74
Identities = 38/210 (18%), Positives = 64/210 (30%), Gaps = 54/210 (25%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD------------D---- 222
+G+ G P AGKSTFL+A V VI D D
Sbjct: 59 LGVTGTPGAGKSTFLEAFGML--------LIREGLKVAVIAVDPSSPVTGGSILGDKTRM 110
Query: 223 ----------FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLK 272
R + + G GA + +I V V + +
Sbjct: 111 NDLARAEAAFIRPVPSSGHLG---GASQRARELMLLCEAAGYDVVIVETVGVGQSETEV- 166
Query: 273 HPKRSCVETVLLLNK-----ELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNL 327
V+ + L +L+ K L+E ++++NK D + + +
Sbjct: 167 ---ARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHM-YESA 222
Query: 328 KDHIHKYPEEFQPEKVIKFQSILPISAKTN 357
+ + +E+QP +L SA
Sbjct: 223 LHILRRKYDEWQPR-------VLTCSALEK 245
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 32.5 bits (75), Expect = 0.42
Identities = 37/250 (14%), Positives = 66/250 (26%), Gaps = 91/250 (36%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----LIE 484
+ G PNAGKST L + I V+ +PG IE
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAI------------------------VSHMPGTTRDYIE 273
Query: 485 GAHRNLGMGHQF-------LRH---------VERTK-------LIAMIVDVNGFQLGLKH 521
F LR + R++ LI ++D+
Sbjct: 274 -ECFIHD-KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLG-------- 323
Query: 522 PKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 581
E + E+ K + + NK+D
Sbjct: 324 -----TERLDDELTEIRELKAAHPAAKFLTVANKLDRAA--------------------N 358
Query: 582 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMV----DRELEL 637
+ ++ ISA ++ K + ++ L + + V R E
Sbjct: 359 ADALIRAIADGTGTEVIGISALNG-DGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEA 417
Query: 638 VKKLKSSLRE 647
++ +L+
Sbjct: 418 LRNASDALQN 427
Score = 30.2 bits (69), Expect = 2.1
Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 87/230 (37%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG----LIE 236
+ G PNAGKST L + I V+ +PG IE
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAI------------------------VSHMPGTTRDYIE 273
Query: 237 GAHRNLGMGHQF-------LRH---------VERTK-------LIAMIVDVNGFQLGLKH 273
F LR + R++ LI ++D+
Sbjct: 274 -ECFIHD-KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLG-------- 323
Query: 274 PKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHK 333
E + E+ K + + NK+D
Sbjct: 324 -----TERLDDELTEIRELKAAHPAAKFLTVANKLDRAA--------------------N 358
Query: 334 YPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMV 383
+ ++ ISA ++ K + ++ L + + V
Sbjct: 359 ADALIRAIADGTGTEVIGISALNG-DGIDTLKQHMGDLVKNLDKLHEASV 407
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 32.6 bits (75), Expect = 0.44
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 179 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 221
IG+VG PN GK+TF+K ++ +P G I +D
Sbjct: 315 IGIVG-PNGIGKTTFVKMLAGV-----------EEPTEGKIEWD 346
Score = 32.6 bits (75), Expect = 0.44
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 13/44 (29%)
Query: 427 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 469
IG+VG PN GK+TF+K ++ +P G I +D
Sbjct: 315 IGIVG-PNGIGKTTFVKMLAGV-----------EEPTEGKIEWD 346
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 31.8 bits (73), Expect = 0.45
Identities = 33/164 (20%), Positives = 51/164 (31%), Gaps = 44/164 (26%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238
+ +G NAGK+T L + R P T P + + K + DL G
Sbjct: 26 LLFLGLDNAGKTTLLHMLKNDRL-ATLQP--TWHPTSEELAIGNI-KFTTFDL-G----- 75
Query: 239 HRNLGMGHQFLRHV-----ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK 293
GH R + I +VD + + EL
Sbjct: 76 ------GHIQARRLWKDYFPEVNGIVFLVD-------------AADPERFDEARV-ELDA 115
Query: 294 M----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 330
+ L + P ++L NK+D A E+ + L N
Sbjct: 116 LFNIAELKDVPFVILGNKIDAPNAVSEAELRSALG--LLNTTGS 157
Score = 31.8 bits (73), Expect = 0.45
Identities = 33/164 (20%), Positives = 51/164 (31%), Gaps = 44/164 (26%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486
+ +G NAGK+T L + R P T P + + K + DL G
Sbjct: 26 LLFLGLDNAGKTTLLHMLKNDRL-ATLQP--TWHPTSEELAIGNI-KFTTFDL-G----- 75
Query: 487 HRNLGMGHQFLRHV-----ERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYK 541
GH R + I +VD + + EL
Sbjct: 76 ------GHIQARRLWKDYFPEVNGIVFLVD-------------AADPERFDEARV-ELDA 115
Query: 542 M----NLLEKPIILLVNKMDVEGA---QEIYDGIRDTLHNLKDH 578
+ L + P ++L NK+D A E+ + L N
Sbjct: 116 LFNIAELKDVPFVILGNKIDAPNAVSEAELRSALG--LLNTTGS 157
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 32.3 bits (74), Expect = 0.53
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 13/44 (29%)
Query: 179 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 221
IG++G PN GK+TF + + I + G +T +
Sbjct: 297 IGILG-PNGIGKTTFARILVGE-----------ITADEGSVTPE 328
Score = 32.3 bits (74), Expect = 0.53
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 13/44 (29%)
Query: 427 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 469
IG++G PN GK+TF + + I + G +T +
Sbjct: 297 IGILG-PNGIGKTTFARILVGE-----------ITADEGSVTPE 328
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 32.1 bits (73), Expect = 0.55
Identities = 41/253 (16%), Positives = 78/253 (30%), Gaps = 55/253 (21%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD----------------- 469
+G+ G P GKST ++A+ V V+ D
Sbjct: 82 VGITGVPGVGKSTAIEALGMH--------LIERGHRVAVLAVDPSSTRTGGSILGDKTRM 133
Query: 470 ----DFRKMSVADLP--GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPK 523
+ P G + G R L ++ V V ++ +
Sbjct: 134 ARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAV---- 189
Query: 524 RSCVETVLLLNK-----ELELYKMNLLEKPIILLVNKMDVEG---AQEIYDGIRDTLHNL 575
+ V+T +LL +L+ K +LE I++VNK D E A+ + + +
Sbjct: 190 ANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLI 249
Query: 576 KDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDREL 635
++P +L +SA + + + +L + R
Sbjct: 250 YPR----EALWRPP-------VLTMSAVEG-RGLAELWDTVERHRQVLTGAGEFDARRRD 297
Query: 636 ELVKKLKSSLREH 648
+ V +R+
Sbjct: 298 QQVDWTWQLVRDA 310
Score = 31.0 bits (70), Expect = 1.4
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 54/210 (25%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD----------------- 221
+G+ G P GKST ++A+ V V+ D
Sbjct: 82 VGITGVPGVGKSTAIEALGMH--------LIERGHRVAVLAVDPSSTRTGGSILGDKTRM 133
Query: 222 ----DFRKMSVADLP--GLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPK 275
+ P G + G R L ++ V V ++ +
Sbjct: 134 ARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAV---- 189
Query: 276 RSCVETVLLLNK-----ELELYKMNLLEKPIILLVNKMDVEG---AQEIYDGIRDTLHNL 327
+ V+T +LL +L+ K +LE I++VNK D E A+ + + +
Sbjct: 190 ANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLI 249
Query: 328 KDHIHKYPEEFQPEKVIKFQSILPISAKTN 357
++P +L +SA
Sbjct: 250 YPR----EALWRPP-------VLTMSAVEG 268
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 31.7 bits (72), Expect = 0.63
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 223
IG+ G +GKS+ I + + + V +++ D F
Sbjct: 25 IGVSGGTASGKSSVCAKIVQ---LLGQNEVDYRQKQVVILSQDSF 66
Score = 31.7 bits (72), Expect = 0.63
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 471
IG+ G +GKS+ I + + + V +++ D F
Sbjct: 25 IGVSGGTASGKSSVCAKIVQ---LLGQNEVDYRQKQVVILSQDSF 66
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 31.8 bits (72), Expect = 0.64
Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 61/256 (23%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD------------D---- 470
+GL G P AGKSTF++ + T + V+ D D
Sbjct: 77 VGLSGPPGAGKSTFIEYFGKM--------LTERGHKLSVLAVDPSSCTSGGSLLGDKTRM 128
Query: 471 ----------FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLK 520
R G G R ++ V V + +
Sbjct: 129 TELSRDMNAYIRPSPTRGTLG---GVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAV- 184
Query: 521 HPKRSCVETVLLLNK-----ELELYKMNLLEKPIILLVNKMD---VEGAQEIYDGIRDTL 572
V+ +LL EL+ K ++E ++ V K D + A+ I L
Sbjct: 185 ---ADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSAL 241
Query: 573 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVD 632
L+ + ++P+ ++ ISA++ +++ K++ DL+ +
Sbjct: 242 KLLRKR----SQVWKPK-------VIRISARSG-EGISEMWDKMKDFQDLMLASGELTAK 289
Query: 633 RELELVKKLKSSLREH 648
R + + + ++E
Sbjct: 290 RRKQQKVWMWNLIQES 305
Score = 30.6 bits (69), Expect = 1.8
Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 60/213 (28%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD------------D---- 222
+GL G P AGKSTF++ + T + V+ D D
Sbjct: 77 VGLSGPPGAGKSTFIEYFGKM--------LTERGHKLSVLAVDPSSCTSGGSLLGDKTRM 128
Query: 223 ----------FRKMSVADLPGLIEGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLK 272
R G G R ++ V V + +
Sbjct: 129 TELSRDMNAYIRPSPTRGTLG---GVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAV- 184
Query: 273 HPKRSCVETVLLLNK-----ELELYKMNLLEKPIILLVNKMD---VEGAQEIYDGIRDTL 324
V+ +LL EL+ K ++E ++ V K D + A+ I L
Sbjct: 185 ---ADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSAL 241
Query: 325 HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 357
L+ + ++P+ ++ ISA++
Sbjct: 242 KLLRKR----SQVWKPK-------VIRISARSG 263
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.5 bits (70), Expect = 0.91
Identities = 31/263 (11%), Positives = 68/263 (25%), Gaps = 47/263 (17%)
Query: 427 IGLVGFPNAGKSTFLKAISRAR-----PKIASYPFTTIK---PNVGVITFDDFRKMSVAD 478
+ ++G GKSTFL A+ + T ++ I F+D + D
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLD 131
Query: 479 LPGLIEGAHRNL----------GMGHQFLRHVERT------KLIAMIVDVNGFQLGLKHP 522
+ + + + IVD G
Sbjct: 132 FQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARN 191
Query: 523 K------RSCVETVLLLN-------KELELYKMNLLEK--PIILLVNKMDVEGAQEIYDG 567
+ +C + ++ E + + + + LVN D I
Sbjct: 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPD 251
Query: 568 IRDTLHNLKDHIHKYPEEFQPEKV------IKFQSILPISAKT--NSTDVNDAKLKIRSI 619
+ L ++ + + E I + + +S+ N +
Sbjct: 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTG 311
Query: 620 LDLLAEEEQEMVDRELELVKKLK 642
+ + RE + + +
Sbjct: 312 FPKFMDSLNTFLTRERAIAELRQ 334
Score = 30.3 bits (67), Expect = 2.1
Identities = 31/261 (11%), Positives = 67/261 (25%), Gaps = 47/261 (18%)
Query: 179 IGLVGFPNAGKSTFLKAISRAR-----PKIASYPFTTIK---PNVGVITFDDFRKMSVAD 230
+ ++G GKSTFL A+ + T ++ I F+D + D
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLD 131
Query: 231 LPGLIEGAHRNL----------GMGHQFLRHVERT------KLIAMIVDVNGFQLGLKHP 274
+ + + + IVD G
Sbjct: 132 FQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARN 191
Query: 275 K------RSCVETVLLLN-------KELELYKMNLLEK--PIILLVNKMDVEGAQEIYDG 319
+ +C + ++ E + + + + LVN D I
Sbjct: 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPD 251
Query: 320 IRDTLHNLKDHIHKYPEEFQPEKV------IKFQSILPISAKT--NSTDVNDAKLKIRSI 371
+ L ++ + + E I + + +S+ N +
Sbjct: 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTG 311
Query: 372 LDLLAEEEQEMVDRELELDSI 392
+ + RE + +
Sbjct: 312 FPKFMDSLNTFLTRERAIAEL 332
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 31.3 bits (71), Expect = 0.98
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 8/113 (7%)
Query: 536 ELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQ 595
EL+ K + E ++ VNK D + + + P
Sbjct: 183 ELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPP------ 236
Query: 596 SILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELVKKLKSSLREH 648
++ IS ++ +I L + R + VK + + + E
Sbjct: 237 -VVTISGLHG-KGLDSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHER 287
Score = 29.3 bits (66), Expect = 3.6
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 8/90 (8%)
Query: 288 ELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQ 347
EL+ K + E ++ VNK D + + + P
Sbjct: 183 ELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPP------ 236
Query: 348 SILPISAKTNSTDVNDAKLKIRSILDLLAE 377
++ IS ++ +I L
Sbjct: 237 -VVTISGLHG-KGLDSLWSRIEDHRSKLTA 264
Score = 29.3 bits (66), Expect = 4.3
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 221
+G+ G P GKST + A+ T V V+ D
Sbjct: 58 VGITGVPGVGKSTTIDALGSL--------LTAAGHKVAVLAVD 92
Score = 29.3 bits (66), Expect = 4.3
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 469
+G+ G P GKST + A+ T V V+ D
Sbjct: 58 VGITGVPGVGKSTTIDALGSL--------LTAAGHKVAVLAVD 92
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 30.9 bits (71), Expect = 1.0
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 181 LVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD 222
L+G N AGK+T L AI+ ++ G I F+
Sbjct: 37 LIG-ANGAGKTTTLSAIAG-----------LVRAQKGKIIFNG 67
Score = 30.9 bits (71), Expect = 1.0
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 429 LVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDD 470
L+G N AGK+T L AI+ ++ G I F+
Sbjct: 37 LIG-ANGAGKTTTLSAIAG-----------LVRAQKGKIIFNG 67
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 31.2 bits (70), Expect = 1.1
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238
I + G AG ST + F I D F + + AD+ ++
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQI--------FRREGVKAVSIEGDAFHRFNRADMKAELDRR 59
Query: 239 HRNLGMGHQFL 249
+
Sbjct: 60 YAAGDATFSHF 70
Score = 31.2 bits (70), Expect = 1.1
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486
I + G AG ST + F I D F + + AD+ ++
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQI--------FRREGVKAVSIEGDAFHRFNRADMKAELDRR 59
Query: 487 HRNLGMGHQFL 497
+
Sbjct: 60 YAAGDATFSHF 70
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.8 bits (69), Expect = 1.2
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 13/160 (8%)
Query: 179 IGLVGFPNAGKSTFLKAI---SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 235
I LVG GKS +I K+ S T + ++ + R++ + D P +
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTK-TCSKSQGSWGN-REIVIIDTPDMF 82
Query: 236 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 295
+ + R + + L + + + + + ++
Sbjct: 83 SWKDHCEALYKEVQRCYLLSAP-----GPHVLLLVTQLGRYTSQDQQAA--QRVKEIFGE 135
Query: 296 LLEKPIILLVNKMDVEGAQEIYDGIRDTLH-NLKDHIHKY 334
I+L + + D + D+ + L +
Sbjct: 136 DAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC 175
Score = 30.8 bits (69), Expect = 1.2
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 13/160 (8%)
Query: 427 IGLVGFPNAGKSTFLKAI---SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLI 483
I LVG GKS +I K+ S T + ++ + R++ + D P +
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTK-TCSKSQGSWGN-REIVIIDTPDMF 82
Query: 484 EGAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMN 543
+ + R + + L + + + + + ++
Sbjct: 83 SWKDHCEALYKEVQRCYLLSAP-----GPHVLLLVTQLGRYTSQDQQAA--QRVKEIFGE 135
Query: 544 LLEKPIILLVNKMDVEGAQEIYDGIRDTLH-NLKDHIHKY 582
I+L + + D + D+ + L +
Sbjct: 136 DAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC 175
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 30.7 bits (70), Expect = 1.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 179 IGLVGFPNAGKSTFLKAISRAR 200
++G PN GKST + +++
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKN 144
Score = 30.7 bits (70), Expect = 1.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 427 IGLVGFPNAGKSTFLKAISRAR 448
++G PN GKST + +++
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKN 144
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 30.8 bits (69), Expect = 1.3
Identities = 31/235 (13%), Positives = 74/235 (31%), Gaps = 27/235 (11%)
Query: 427 IGLVGFPNAGKSTFLKAI--SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIE 484
+ LVG AGKS +I R T G +D + V D P +
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-CHVEVVDTPDIFS 82
Query: 485 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL 544
ER + L + R + + + +++ ++
Sbjct: 83 SQVSK-----TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDV 137
Query: 545 LEKPIILLVNKMDVEGAQEIYDGIRDTLH-NLKDHIHKYPEEFQPEKVIKFQSILPISAK 603
L+ +I+ K D+ G ++D + +T + L++ + + +V F + + +
Sbjct: 138 LKWMVIVFTRKEDLAG-GSLHDYVSNTENRALRELVAEC-----GGRVCAFDN--RATGR 189
Query: 604 TNSTDVNDAKLKIRSIL----------DLLAEEEQEMVDRELELVKKLKSSLREH 648
V + ++ ++ + E ++++ +
Sbjct: 190 EQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAERVAAR 244
Score = 30.4 bits (68), Expect = 1.5
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 10/159 (6%)
Query: 179 IGLVGFPNAGKSTFLKAI--SRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIE 236
+ LVG AGKS +I R T G +D + V D P +
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-CHVEVVDTPDIFS 82
Query: 237 GAHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNL 296
ER + L + R + + + +++ ++
Sbjct: 83 SQVSK-----TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDV 137
Query: 297 LEKPIILLVNKMDVEGAQEIYDGIRDTLH-NLKDHIHKY 334
L+ +I+ K D+ G ++D + +T + L++ + +
Sbjct: 138 LKWMVIVFTRKEDLAG-GSLHDYVSNTENRALRELVAEC 175
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 30.7 bits (70), Expect = 1.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 161 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRAR 200
G + L +L +A + +VG PN GKST + + R
Sbjct: 84 GEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKR 123
Score = 30.7 bits (70), Expect = 1.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 409 GRKGEELAVRLELKLIADIGLVGFPNAGKSTFLKAISRAR 448
G + L +L +A + +VG PN GKST + + R
Sbjct: 84 GEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKR 123
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.4
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 15/77 (19%)
Query: 577 DHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELE 636
+ I K+ EE + + D + + ++ +E R+ E
Sbjct: 85 ESIRKWREEQRKR----------LQEL----DAASKV-MEQEWREKAKKDLEEWNQRQSE 129
Query: 637 LVKKLKSSLREHQGEMI 653
V+K K + R
Sbjct: 130 QVEKNKINNRIADKAFY 146
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 30.5 bits (69), Expect = 1.4
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 223
IG+ G +GKST + I + + V +++ D F
Sbjct: 28 IGVSGGTASGKSTVCEKIME---LLGQNEVEQRQRKVVILSQDRF 69
Score = 30.5 bits (69), Expect = 1.4
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 471
IG+ G +GKST + I + + V +++ D F
Sbjct: 28 IGVSGGTASGKSTVCEKIME---LLGQNEVEQRQRKVVILSQDRF 69
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 31.1 bits (70), Expect = 1.5
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 300 PIILLVNKMDVEGA------QEIYDGIRDTLHNLKDHIHKYPEEFQPE 341
++++NK+D +++Y T+ ++ + Y +E +
Sbjct: 152 KPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGD 199
Score = 31.1 bits (70), Expect = 1.5
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 548 PIILLVNKMDVEGA------QEIYDGIRDTLHNLKDHIHKYPEEFQPE 589
++++NK+D +++Y T+ ++ + Y +E +
Sbjct: 152 KPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGD 199
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 31.0 bits (71), Expect = 1.5
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 546 EKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 605
K ++++NK+DV K EE K+ + ++ ISA
Sbjct: 350 NKRYLVVINKVDVVE--------------------KINEEEIKNKLGTDRHMVKISALKG 389
Query: 606 STDVNDAKLKIRSILDLLAEEEQEMV---DRELELVKKLKSSLRE 647
+ + I + E + + R+ +L++ +K L +
Sbjct: 390 -EGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLED 433
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 29.8 bits (68), Expect = 1.6
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 18/142 (12%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 237
+ +VG PN GKS+ + + R + A P T GV+ D + + D GL G
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGLWSG 62
Query: 238 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 297
+ + R +E +++ VD + L E L +
Sbjct: 63 DKWEKKIQEKVDRALEDAEVVLFAVDG---RAELTQADYEVAE---------YLRRKG-- 108
Query: 298 EKPIILLVNKMD-VEGAQEIYD 318
KP+IL+ K+D + +
Sbjct: 109 -KPVILVATKVDDPKHELYLGP 129
Score = 29.8 bits (68), Expect = 1.6
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 18/142 (12%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKI-ASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEG 485
+ +VG PN GKS+ + + R + A P T GV+ D + + D GL G
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGLWSG 62
Query: 486 AHRNLGMGHQFLRHVERTKLIAMIVDVNGFQLGLKHPKRSCVETVLLLNKELELYKMNLL 545
+ + R +E +++ VD + L E L +
Sbjct: 63 DKWEKKIQEKVDRALEDAEVVLFAVDG---RAELTQADYEVAE---------YLRRKG-- 108
Query: 546 EKPIILLVNKMD-VEGAQEIYD 566
KP+IL+ K+D + +
Sbjct: 109 -KPVILVATKVDDPKHELYLGP 129
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 30.6 bits (69), Expect = 1.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 181 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM 226
L G P GKSTF K +++ + +V V+ D R+
Sbjct: 9 LTGLPGVGKSTFSKNLAKI--------LSKNNIDVIVLGSDLIRES 46
Score = 30.6 bits (69), Expect = 1.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 429 LVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKM 474
L G P GKSTF K +++ + +V V+ D R+
Sbjct: 9 LTGLPGVGKSTFSKNLAKI--------LSKNNIDVIVLGSDLIRES 46
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 31.2 bits (70), Expect = 1.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 179 IGLVGFPNAGKSTFLKAISRA 199
G+ G GKST ++AI+
Sbjct: 464 YGICGPNGCGKSTLMRAIANG 484
Score = 31.2 bits (70), Expect = 1.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 427 IGLVGFPNAGKSTFLKAISRA 447
G+ G GKST ++AI+
Sbjct: 464 YGICGPNGCGKSTLMRAIANG 484
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 30.2 bits (68), Expect = 1.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 12/45 (26%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 223
IG+ G N+GK+T K + + PN VI+ DDF
Sbjct: 24 IGISGVTNSGKTTLAKNLQK------------HLPNCSVISQDDF 56
Score = 30.2 bits (68), Expect = 1.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 12/45 (26%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 471
IG+ G N+GK+T K + + PN VI+ DDF
Sbjct: 24 IGISGVTNSGKTTLAKNLQK------------HLPNCSVISQDDF 56
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 30.5 bits (70), Expect = 1.7
Identities = 45/253 (17%), Positives = 79/253 (31%), Gaps = 102/253 (40%)
Query: 429 LVGFPNAGKSTFLKAIS---RARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG---- 481
+VG PN GKS+ L A S RA I V DLPG
Sbjct: 229 IVGRPNVGKSSLLNAWSQSDRA------------------I---------VTDLPGTTRD 261
Query: 482 LIEGAHRNLGMGHQF-------LRH---------VERTK-------LIAMIVDVNGFQLG 518
++E + +G G +R VER++ L+ + +D
Sbjct: 262 VVE-SQLVVG-GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDA------ 313
Query: 519 LKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 578
+ E+Y+ + +P+IL++NK+D+
Sbjct: 314 ----------ATGWTTGDQEIYEQ-VKHRPLILVMNKIDLVEK----------------- 345
Query: 579 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMV----DRE 634
E I+ +A ++ + I I+ + +M R+
Sbjct: 346 ----QLITSLEYPENITQIVHTAAAQK-QGIDSLETAILEIVQTGKVQAADMDLAINQRQ 400
Query: 635 LELVKKLKSSLRE 647
+ + K SL +
Sbjct: 401 AAALTQAKMSLEQ 413
Score = 28.2 bits (64), Expect = 9.5
Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 98/233 (42%)
Query: 181 LVGFPNAGKSTFLKAIS---RARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPG---- 233
+VG PN GKS+ L A S RA I V DLPG
Sbjct: 229 IVGRPNVGKSSLLNAWSQSDRA------------------I---------VTDLPGTTRD 261
Query: 234 LIEGAHRNLGMGHQF-------LRH---------VERTK-------LIAMIVDVNGFQLG 270
++E + +G G +R VER++ L+ + +D
Sbjct: 262 VVE-SQLVVG-GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDA------ 313
Query: 271 LKHPKRSCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDTLHNLKDH 330
+ E+Y+ + +P+IL++NK+D+
Sbjct: 314 ----------ATGWTTGDQEIYEQ-VKHRPLILVMNKIDLVEK----------------- 345
Query: 331 IHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMV 383
E I+ +A ++ + I I+ + +M
Sbjct: 346 ----QLITSLEYPENITQIVHTAAAQK-QGIDSLETAILEIVQTGKVQAADMD 393
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.0 bits (68), Expect = 1.7
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 223
+G+ G +GK+T +S+ +V V DD
Sbjct: 25 LGIDGLSRSGKTTLANQLSQT--------LREQGISVCVFHMDDH 61
Score = 30.0 bits (68), Expect = 1.7
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 471
+G+ G +GK+T +S+ +V V DD
Sbjct: 25 LGIDGLSRSGKTTLANQLSQT--------LREQGISVCVFHMDDH 61
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 30.2 bits (69), Expect = 1.8
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 15/51 (29%)
Query: 179 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSV 228
+ ++G N GKST L + +P G I ++ +
Sbjct: 34 LAVLG-QNGCGKSTLLDLLLG-----------IHRPIQGKIEV--YQSIGF 70
Score = 30.2 bits (69), Expect = 1.8
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 15/51 (29%)
Query: 427 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSV 476
+ ++G N GKST L + +P G I ++ +
Sbjct: 34 LAVLG-QNGCGKSTLLDLLLG-----------IHRPIQGKIEV--YQSIGF 70
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 30.4 bits (69), Expect = 2.2
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 13/44 (29%)
Query: 179 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 221
+ ++G N GK+T +K ++ A +KP+ G
Sbjct: 381 LVMMG-ENGTGKTTLIKLLAGA-----------LKPDEGQDIPK 412
Score = 30.4 bits (69), Expect = 2.2
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 13/44 (29%)
Query: 427 IGLVGFPN-AGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD 469
+ ++G N GK+T +K ++ A +KP+ G
Sbjct: 381 LVMMG-ENGTGKTTLIKLLAGA-----------LKPDEGQDIPK 412
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 30.0 bits (68), Expect = 2.5
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 299 KPIILLVNKMD---VEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISA 354
+++++NKMD V+ ++E Y D L + Y + +K+ +P+SA
Sbjct: 182 NHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY----NSKTDVKY---MPVSA 233
Score = 30.0 bits (68), Expect = 2.5
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 547 KPIILLVNKMD---VEGAQEIYDGIRDTLHNLKDHIHKYPEEFQPEKVIKFQSILPISA 602
+++++NKMD V+ ++E Y D L + Y + +K+ +P+SA
Sbjct: 182 NHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY----NSKTDVKY---MPVSA 233
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 28.7 bits (64), Expect = 4.7
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238
I + G P GK+T +A++ + +++ D F+++ L
Sbjct: 8 IIVTGHPATGKTTLSQALATGL-------------RLPLLSKDAFKEVMFDGLGWSDREW 54
Query: 239 HRNLG 243
R +G
Sbjct: 55 SRRVG 59
Score = 28.7 bits (64), Expect = 4.7
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486
I + G P GK+T +A++ + +++ D F+++ L
Sbjct: 8 IIVTGHPATGKTTLSQALATGL-------------RLPLLSKDAFKEVMFDGLGWSDREW 54
Query: 487 HRNLG 491
R +G
Sbjct: 55 SRRVG 59
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.7 bits (65), Expect = 4.7
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 223
IG+ G +GK+T +A++R + V ++ D +
Sbjct: 9 IGIAGGTASGKTTLAQALART-----------LGERVALLPMDHY 42
Score = 28.7 bits (65), Expect = 4.7
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDF 471
IG+ G +GK+T +A++R + V ++ D +
Sbjct: 9 IGIAGGTASGKTTLAQALART-----------LGERVALLPMDHY 42
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.1 bits (62), Expect = 6.0
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 179 IGLVGFPNAGKSTFLKAISRA 199
+VG+ ++GK+T ++ A
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAA 27
Score = 28.1 bits (62), Expect = 6.0
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 427 IGLVGFPNAGKSTFLKAISRA 447
+VG+ ++GK+T ++ A
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAA 27
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 27.9 bits (63), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 181 LVGFPNAGKSTFLKAISR 198
+ G PNAGKS+ L A++
Sbjct: 9 IAGRPNAGKSSLLNALAG 26
Score = 27.9 bits (63), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 429 LVGFPNAGKSTFLKAISR 446
+ G PNAGKS+ L A++
Sbjct: 9 IAGRPNAGKSSLLNALAG 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 28.2 bits (64), Expect = 7.0
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD--DFRKMSVADLPGLI 235
IG+VG +GKST K I R Y P G + D D L +
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRF------YI-----PENGQVLIDGHDLALADPNWLRRQV 85
Score = 28.2 bits (64), Expect = 7.0
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFD--DFRKMSVADLPGLI 483
IG+VG +GKST K I R Y P G + D D L +
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRF------YI-----PENGQVLIDGHDLALADPNWLRRQV 85
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 27.7 bits (61), Expect = 7.8
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 179 IGLVGFPNAGKSTFLKAISRA 199
+ +VG ++GK+T + +
Sbjct: 5 LSIVGTSDSGKTTLITRMMPI 25
Score = 27.7 bits (61), Expect = 7.8
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 427 IGLVGFPNAGKSTFLKAISRA 447
+ +VG ++GK+T + +
Sbjct: 5 LSIVGTSDSGKTTLITRMMPI 25
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.8 bits (61), Expect = 9.4
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 11/77 (14%)
Query: 179 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 238
I L G +AGKS ++ + P+ P+ D + + G
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPE----PWLAFG-------VDSLIEAMPLKMQSAEGGI 54
Query: 239 HRNLGMGHQFLRHVERT 255
+ G
Sbjct: 55 EFDADGGVSIGPEFRAL 71
Score = 27.8 bits (61), Expect = 9.4
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 11/77 (14%)
Query: 427 IGLVGFPNAGKSTFLKAISRARPKIASYPFTTIKPNVGVITFDDFRKMSVADLPGLIEGA 486
I L G +AGKS ++ + P+ P+ D + + G
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPE----PWLAFG-------VDSLIEAMPLKMQSAEGGI 54
Query: 487 HRNLGMGHQFLRHVERT 503
+ G
Sbjct: 55 EFDADGGVSIGPEFRAL 71
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 28.4 bits (64), Expect = 9.4
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 31/120 (25%)
Query: 300 PIILLVNKMDVEGAQEIYDG--IRDTLHNLKDHIHKYPEEFQPEKVI------------- 344
P ++ NK+D +++G +T + + + + +++
Sbjct: 124 PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT-KVYELVGKLHEEGFESERF 182
Query: 345 -------KFQSILPISAKTNSTDVNDAKLKIRSILDLLAEEEQEMVDRELELDSIIIAHG 397
SI+PISA T I +L +L Q+ + +L+++ A G
Sbjct: 183 DRVTDFASQVSIIPISAIT--------GEGIPELLTMLMGLAQQYLREQLKIEEDSPARG 234
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger,
propeller cluster, helical repeats, cullin repeats,
protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP:
a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Length = 759
Score = 28.3 bits (62), Expect = 9.4
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 22/143 (15%)
Query: 272 KHPKR--------SCVETVLLLNKELELYKMNLLEKPIILLVNKMDVEGAQEIYDGIRDT 323
KH R + + ++++L + ++L+ N+ D +EI
Sbjct: 561 KHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIE 620
Query: 324 LHNLKDHIHKYPEEFQPEKVIKFQSILPISAKTNSTDVNDA------KLKIRSILDLLAE 377
L+ + +V+ + N ++KI I
Sbjct: 621 DSELRRTLQ--SLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678
Query: 378 EEQEMV------DRELELDSIII 394
EEQ DR+ ++D+ I+
Sbjct: 679 EEQVSTTERVFQDRQYQIDAAIV 701
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 27.6 bits (62), Expect = 9.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 300 PIILLVNKMDVEGAQEIYDGIRDTL--HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 357
PII+ +NKMD A D + L +NL PEE+ + + +SAKT
Sbjct: 109 PIIVAINKMDKPEANP--DRVMQELMEYNL------VPEEWGGDTI-----FCKLSAKTK 155
Score = 27.6 bits (62), Expect = 9.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 548 PIILLVNKMDVEGAQEIYDGIRDTL--HNLKDHIHKYPEEFQPEKVIKFQSILPISAKTN 605
PII+ +NKMD A D + L +NL PEE+ + + +SAKT
Sbjct: 109 PIIVAINKMDKPEANP--DRVMQELMEYNL------VPEEWGGDTI-----FCKLSAKTK 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.386
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,984,336
Number of extensions: 652423
Number of successful extensions: 2836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2718
Number of HSP's successfully gapped: 308
Length of query: 654
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 554
Effective length of database: 3,909,693
Effective search space: 2165969922
Effective search space used: 2165969922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)