BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10860
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2RZ78|VPS29_RAT Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus
GN=Vps29 PE=1 SV=2
Length = 182
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENK
Sbjct: 68 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENK 127
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA+N LE
Sbjct: 128 FYINPGSATGAYNALE 143
>sp|Q5R9Z1|VPS29_PONAB Vacuolar protein sorting-associated protein 29 OS=Pongo abelii
GN=VPS29 PE=2 SV=1
Length = 182
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENK
Sbjct: 68 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENK 127
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA+N LE
Sbjct: 128 FYINPGSATGAYNALE 143
>sp|Q9QZ88|VPS29_MOUSE Vacuolar protein sorting-associated protein 29 OS=Mus musculus
GN=Vps29 PE=1 SV=1
Length = 182
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENK
Sbjct: 68 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENK 127
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA+N LE
Sbjct: 128 FYINPGSATGAYNALE 143
>sp|Q3T0M0|VPS29_BOVIN Vacuolar protein sorting-associated protein 29 OS=Bos taurus
GN=VPS29 PE=2 SV=1
Length = 186
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENK
Sbjct: 72 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENK 131
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA+N LE
Sbjct: 132 FYINPGSATGAYNALE 147
>sp|Q9UBQ0|VPS29_HUMAN Vacuolar protein sorting-associated protein 29 OS=Homo sapiens
GN=VPS29 PE=1 SV=1
Length = 182
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENK
Sbjct: 68 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENK 127
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA+N LE
Sbjct: 128 FYINPGSATGAYNALE 143
>sp|Q6DEU3|VPS29_XENTR Vacuolar protein sorting-associated protein 29 OS=Xenopus
tropicalis GN=vps29 PE=2 SV=1
Length = 182
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQLDVDILISGHT KFEA+EHENK
Sbjct: 68 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENK 127
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA+N LE
Sbjct: 128 FYINPGSATGAYNALE 143
>sp|Q6GP62|VPS29_XENLA Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis
GN=vps29 PE=2 SV=1
Length = 182
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQLDVDILISGHT KFEA+EHENK
Sbjct: 68 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENK 127
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA+N LE
Sbjct: 128 FYINPGSATGAYNALE 143
>sp|Q5ZIL2|VPS29_CHICK Vacuolar protein sorting-associated protein 29 OS=Gallus gallus
GN=VPS29 PE=2 SV=1
Length = 186
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENK
Sbjct: 72 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENK 131
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA++ LE
Sbjct: 132 FYINPGSATGAYHALE 147
>sp|Q7ZV68|VPS29_DANRE Vacuolar protein sorting-associated protein 29 OS=Danio rerio
GN=vps29 PE=2 SV=1
Length = 182
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 71/76 (93%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQLDVDILISGHTHKFEA+E+ENK
Sbjct: 68 NYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTHKFEAFENENK 127
Query: 65 FYINPGSATGAFNPLE 80
FYINPGSATGA++ LE
Sbjct: 128 FYINPGSATGAYSALE 143
>sp|Q54IF7|VPS29_DICDI Vacuolar protein sorting-associated protein 29 OS=Dictyostelium
discoideum GN=vps29 PE=3 SV=1
Length = 183
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 62/76 (81%)
Query: 2 KGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEH 61
+ TSYP+ K+V++GQF+ GLCHGH I+PWGD +LA LQRQLDVD+LISGHTH E +E
Sbjct: 65 ENTSYPDTKIVSIGQFKFGLCHGHQIVPWGDRASLAALQRQLDVDVLISGHTHVLEVFES 124
Query: 62 ENKFYINPGSATGAFN 77
K ++NPGSATGAF+
Sbjct: 125 NGKLFVNPGSATGAFS 140
>sp|Q9STT2|VPS29_ARATH Vacuolar protein sorting-associated protein 29 OS=Arabidopsis
thaliana GN=VPS29 PE=2 SV=1
Length = 190
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 63/74 (85%)
Query: 6 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF 65
YPE K +T+GQF++GLCHGH +IPWGD ++LA+LQRQL VDIL++GHTH+F AY+HE
Sbjct: 70 YPENKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLGVDILVTGHTHQFTAYKHEGGV 129
Query: 66 YINPGSATGAFNPL 79
INPGSATGA++ +
Sbjct: 130 VINPGSATGAYSSI 143
>sp|P38759|VPS29_YEAST Vacuolar protein sorting-associated protein 29 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS29 PE=1
SV=1
Length = 282
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 7 PEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFY 66
P ++ G +IG C G+ ++P DP +L L RQLDVDIL+ G TH EAY E KF+
Sbjct: 89 PMNSIIRQGALKIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFF 148
Query: 67 INPGSATGAFNPLEPL 82
+NPGS TGAFN P+
Sbjct: 149 VNPGSCTGAFNTDWPI 164
>sp|Q9UTI5|VPS29_SCHPO Vacuolar protein sorting-associated protein 29
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps29 PE=3 SV=1
Length = 187
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 50/66 (75%)
Query: 12 VTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 71
+T+G F+IG +GH ++P PEAL++L R++D DIL+ G THKF AYE + F++NPGS
Sbjct: 75 ITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFAAYELDGCFFVNPGS 134
Query: 72 ATGAFN 77
ATGA N
Sbjct: 135 ATGAPN 140
>sp|Q58040|Y623_METJA Putative metallophosphoesterase MJ0623 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0623 PE=3 SV=1
Length = 192
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 1 MKGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYE 60
M + P K+++ + +IG+ HG + P GD L LL +++ VD+LISGHTH +
Sbjct: 93 MDYLNLPRKEILEINDIKIGVIHGDVVYPRGDRLKLRLLGKEMGVDVLISGHTHTPFIDD 152
Query: 61 HENKFYINPGSATGAFNPLEPL 82
+ +NPGS T PL+ +
Sbjct: 153 CRDILLLNPGSPTVPRCPLKSI 174
>sp|O27802|Y1774_METTH Putative metallophosphoesterase MTH_1774 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1774 PE=3 SV=1
Length = 172
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 3 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE 62
G P ++ + FR+GL HG ++ P GD + L L +L D+LISGHTH+ E E
Sbjct: 65 GIETPRSRLFEIESFRVGLIHG-EVYPRGDTQQLRYLGLELGADVLISGHTHQPFIRELE 123
Query: 63 NKFYINPGSAT 73
+ +NPGS T
Sbjct: 124 DMVLLNPGSPT 134
>sp|P67095|YFCE_ECOLI Phosphodiesterase YfcE OS=Escherichia coli (strain K12) GN=yfcE
PE=1 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+ P ++V+ Q R+ L HGH PE L L + D+L+ GHTH A +
Sbjct: 88 TAPWQQVLLEKQ-RLFLTHGHLF----GPENLPALNQN---DVLVYGHTHLPVAEQRGEI 139
Query: 65 FYINPGSAT 73
F+ NPGS +
Sbjct: 140 FHFNPGSVS 148
>sp|P67096|YFCE_ECOL6 Phosphodiesterase YfcE OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yfcE PE=3 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+ P ++V+ Q R+ L HGH PE L L + D+L+ GHTH A +
Sbjct: 88 TAPWQQVLLEKQ-RLFLTHGHLF----GPENLPALNQN---DVLVYGHTHLPVAEQRGEI 139
Query: 65 FYINPGSAT 73
F+ NPGS +
Sbjct: 140 FHFNPGSVS 148
>sp|P67097|YFCE_ECO57 Phosphodiesterase YfcE OS=Escherichia coli O157:H7 GN=yfcE PE=3
SV=1
Length = 184
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+ P ++V+ Q R+ L HGH PE L L + D+L+ GHTH A +
Sbjct: 88 TAPWQQVLLEKQ-RLFLTHGHLF----GPENLPALNQN---DVLVYGHTHLPVAEQRGEI 139
Query: 65 FYINPGSAT 73
F+ NPGS +
Sbjct: 140 FHFNPGSVS 148
>sp|P47449|Y207_MYCGE Putative metallophosphoesterase MG207 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=MG207 PE=3
SV=2
Length = 163
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 8 EKKVVTVGQFRIGLCHGH-----DIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE 62
E ++ +GQ L HGH ++ W + L L +Q D+LI GH+H E+
Sbjct: 60 EIEIFQLGQINFVLMHGHQAPRDNLKKWY--QLLVLKAQQYPCDVLIFGHSH----IEYT 113
Query: 63 NKF----YINPGS 71
NK INPGS
Sbjct: 114 NKINMIQLINPGS 126
>sp|Q1LS86|ACEK_RALME Isocitrate dehydrogenase kinase/phosphatase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=aceK PE=3 SV=1
Length = 607
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 19/69 (27%)
Query: 25 HDIIP-------WGDPEALALLQR-----------QLDVDILISGHTHKFEAYEHENKFY 66
HDI P GDP A R Q D L++GH H F AY + +F
Sbjct: 529 HDIFPETYGTFLLGDPRVRAAFMRHHPDFFDAAMWQHHKDRLLAGHVHDFFAYHSQERFI 588
Query: 67 INPGS-ATG 74
GS ATG
Sbjct: 589 HRYGSGATG 597
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,214,182
Number of Sequences: 539616
Number of extensions: 1496624
Number of successful extensions: 2896
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2874
Number of HSP's gapped (non-prelim): 29
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)