Query psy10860
Match_columns 91
No_of_seqs 182 out of 1004
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 20:18:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0622 Predicted phosphoester 99.9 1.3E-25 2.9E-30 148.4 11.4 88 1-91 62-153 (172)
2 cd07394 MPP_Vps29 Homo sapiens 99.9 1.5E-24 3.2E-29 143.8 12.9 90 1-90 62-153 (178)
3 TIGR00040 yfcE phosphoesterase 99.9 9.8E-21 2.1E-25 122.5 11.2 84 4-90 66-149 (158)
4 cd00841 MPP_YfcE Escherichia c 99.9 1.3E-20 2.7E-25 121.1 11.0 82 5-90 64-145 (155)
5 KOG3325|consensus 99.8 4.9E-19 1.1E-23 114.4 10.0 88 3-90 66-155 (183)
6 PRK09453 phosphodiesterase; Pr 99.8 6.3E-19 1.4E-23 116.5 10.0 72 9-90 90-161 (182)
7 PF12850 Metallophos_2: Calcin 99.7 7.1E-16 1.5E-20 98.1 11.2 82 6-90 71-152 (156)
8 cd07379 MPP_239FB Homo sapiens 99.2 3.7E-11 8.1E-16 75.8 6.1 57 14-70 66-135 (135)
9 cd07424 MPP_PrpA_PrpB PrpA and 99.2 7.4E-11 1.6E-15 79.4 6.9 72 4-75 107-199 (207)
10 cd07388 MPP_Tt1561 Thermus the 99.1 4.6E-10 9.9E-15 77.1 8.7 60 15-75 147-209 (224)
11 PRK09968 serine/threonine-spec 99.1 2.4E-10 5.3E-15 77.8 7.0 70 4-73 121-208 (218)
12 cd07398 MPP_YbbF-LpxH Escheric 99.1 1.1E-09 2.4E-14 73.3 8.4 34 39-72 184-217 (217)
13 cd07392 MPP_PAE1087 Pyrobaculu 99.0 7.1E-10 1.5E-14 72.2 6.6 56 15-70 123-188 (188)
14 COG2129 Predicted phosphoester 99.0 1.3E-09 2.7E-14 74.7 7.4 64 18-90 140-213 (226)
15 COG2908 Uncharacterized protei 99.0 9.9E-10 2.1E-14 75.8 5.4 69 5-73 94-216 (237)
16 cd07400 MPP_YydB Bacillus subt 99.0 2.2E-09 4.9E-14 67.8 6.4 53 19-71 81-144 (144)
17 cd07403 MPP_TTHA0053 Thermus t 98.9 2.5E-09 5.3E-14 67.5 5.8 54 17-70 57-122 (129)
18 TIGR01854 lipid_A_lpxH UDP-2,3 98.8 8.7E-08 1.9E-12 65.5 9.7 68 6-73 95-218 (231)
19 cd07402 MPP_GpdQ Enterobacter 98.8 3.2E-08 7E-13 67.1 7.0 66 15-80 143-218 (240)
20 PF14582 Metallophos_3: Metall 98.7 4.6E-08 9.9E-13 67.6 6.7 65 17-90 175-244 (255)
21 PRK05340 UDP-2,3-diacylglucosa 98.7 2.7E-07 5.8E-12 63.4 9.9 68 5-72 96-219 (241)
22 PRK11439 pphA serine/threonine 98.7 6.2E-08 1.3E-12 65.9 5.6 70 4-73 123-208 (218)
23 cd00840 MPP_Mre11_N Mre11 nucl 98.5 9.1E-08 2E-12 63.8 3.8 61 15-75 156-220 (223)
24 cd07390 MPP_AQ1575 Aquifex aeo 98.5 1.5E-07 3.4E-12 61.5 4.5 56 5-71 96-151 (168)
25 cd07395 MPP_CSTP1 Homo sapiens 98.5 1.2E-06 2.6E-11 60.5 8.7 72 16-90 166-249 (262)
26 cd07393 MPP_DR1119 Deinococcus 98.5 8.9E-07 1.9E-11 60.6 7.2 59 17-75 166-229 (232)
27 cd07423 MPP_PrpE Bacillus subt 98.3 2.4E-06 5.2E-11 58.5 5.7 30 44-73 181-210 (234)
28 PRK04036 DNA polymerase II sma 98.3 7.6E-06 1.7E-10 62.0 8.7 64 11-74 373-470 (504)
29 cd07404 MPP_MS158 Microscilla 98.3 3.1E-06 6.8E-11 54.7 5.8 54 16-69 97-163 (166)
30 PRK11148 cyclic 3',5'-adenosin 98.2 1.2E-05 2.5E-10 56.2 8.5 58 17-74 158-225 (275)
31 cd07396 MPP_Nbla03831 Homo sap 98.2 9.5E-06 2.1E-10 56.5 7.6 70 17-90 181-258 (267)
32 cd07378 MPP_ACP5 Homo sapiens 98.2 2.1E-05 4.5E-10 54.5 9.0 61 16-76 167-235 (277)
33 TIGR03729 acc_ester putative p 98.2 5.9E-06 1.3E-10 56.6 6.2 55 15-69 164-235 (239)
34 cd00838 MPP_superfamily metall 98.0 3.1E-05 6.7E-10 46.5 6.8 61 10-70 61-131 (131)
35 cd07383 MPP_Dcr2 Saccharomyces 98.0 9.2E-06 2E-10 54.1 4.6 41 35-75 155-195 (199)
36 PF00149 Metallophos: Calcineu 97.9 2.8E-05 6.1E-10 47.6 5.3 43 14-56 148-200 (200)
37 cd07386 MPP_DNA_pol_II_small_a 97.9 1.2E-05 2.5E-10 55.3 3.8 31 44-74 191-221 (243)
38 cd07397 MPP_DevT Myxococcus xa 97.8 7.8E-05 1.7E-09 51.8 6.2 60 15-74 146-236 (238)
39 cd07410 MPP_CpdB_N Escherichia 97.7 0.00012 2.7E-09 51.1 6.0 61 15-75 184-250 (277)
40 cd00839 MPP_PAPs purple acid p 97.6 0.00026 5.7E-09 49.3 6.0 61 17-77 156-242 (294)
41 cd07425 MPP_Shelphs Shewanella 97.6 0.00017 3.6E-09 48.9 4.9 65 4-72 119-198 (208)
42 cd07412 MPP_YhcR_N Bacillus su 97.4 0.00042 9.2E-09 48.9 5.9 60 16-75 193-263 (288)
43 cd07405 MPP_UshA_N Escherichia 97.4 0.00051 1.1E-08 48.5 5.8 61 15-75 174-259 (285)
44 COG0639 ApaH Diadenosine tetra 97.4 8.8E-05 1.9E-09 45.6 1.4 72 18-90 45-120 (155)
45 cd07401 MPP_TMEM62_N Homo sapi 97.3 0.00065 1.4E-08 47.2 5.8 57 16-72 166-232 (256)
46 PTZ00422 glideosome-associated 97.3 0.0024 5.3E-08 47.4 8.7 62 15-76 213-280 (394)
47 COG4186 Predicted phosphoester 97.3 0.00064 1.4E-08 44.9 5.0 62 8-71 100-161 (186)
48 cd07406 MPP_CG11883_N Drosophi 97.2 0.0014 3.1E-08 45.5 6.2 54 16-75 173-226 (257)
49 cd00845 MPP_UshA_N_like Escher 97.2 0.0008 1.7E-08 46.0 4.9 55 15-75 171-227 (252)
50 cd07408 MPP_SA0022_N Staphyloc 97.1 0.0012 2.7E-08 45.7 5.3 59 15-75 172-235 (257)
51 cd07411 MPP_SoxB_N Thermus the 97.0 0.0021 4.5E-08 44.7 5.7 55 15-75 184-241 (264)
52 cd07407 MPP_YHR202W_N Saccharo 97.0 0.0037 8E-08 44.3 6.7 61 15-75 188-251 (282)
53 COG1768 Predicted phosphohydro 97.0 0.001 2.2E-08 45.0 3.5 41 17-57 160-200 (230)
54 smart00854 PGA_cap Bacterial c 96.9 0.0058 1.3E-07 41.9 7.3 53 15-67 173-229 (239)
55 TIGR00583 mre11 DNA repair pro 96.9 0.0026 5.7E-08 47.3 5.7 75 15-90 200-279 (405)
56 cd07381 MPP_CapA CapA and rela 96.8 0.0065 1.4E-07 41.5 6.7 53 15-67 175-231 (239)
57 PRK09418 bifunctional 2',3'-cy 96.7 0.0042 9.1E-08 49.6 5.7 61 15-75 245-308 (780)
58 cd07391 MPP_PF1019 Pyrococcus 96.7 0.0021 4.5E-08 42.0 3.4 33 17-62 107-139 (172)
59 PF09587 PGA_cap: Bacterial ca 96.7 0.011 2.4E-07 40.8 7.1 56 15-70 184-244 (250)
60 PRK09419 bifunctional 2',3'-cy 96.6 0.0059 1.3E-07 50.5 5.9 60 16-75 840-901 (1163)
61 TIGR03767 P_acnes_RR metalloph 96.6 0.0088 1.9E-07 45.6 6.3 57 16-72 338-417 (496)
62 TIGR00024 SbcD_rel_arch putati 96.5 0.012 2.6E-07 40.4 6.4 45 4-60 106-150 (225)
63 PLN02533 probable purple acid 96.5 0.0081 1.8E-07 44.9 5.8 59 17-75 285-361 (427)
64 COG1311 HYS2 Archaeal DNA poly 96.5 0.014 2.9E-07 44.3 6.9 33 42-74 416-448 (481)
65 TIGR01390 CycNucDiestase 2',3' 96.5 0.007 1.5E-07 47.2 5.5 60 16-75 197-273 (626)
66 cd07385 MPP_YkuE_C Bacillus su 96.5 0.0039 8.5E-08 41.6 3.6 35 15-58 134-168 (223)
67 PRK09558 ushA bifunctional UDP 96.4 0.0085 1.8E-07 45.9 5.6 60 16-75 211-295 (551)
68 PRK09419 bifunctional 2',3'-cy 96.4 0.012 2.6E-07 48.7 6.7 61 15-75 235-313 (1163)
69 cd07409 MPP_CD73_N CD73 ecto-5 96.4 0.0072 1.6E-07 42.5 4.8 53 16-75 184-257 (281)
70 PRK11340 phosphodiesterase Yae 96.3 0.0045 9.8E-08 43.3 3.5 32 15-55 182-213 (271)
71 cd07399 MPP_YvnB Bacillus subt 96.3 0.015 3.2E-07 39.3 5.7 45 17-61 108-166 (214)
72 PRK09420 cpdB bifunctional 2', 96.2 0.013 2.8E-07 46.0 5.6 61 15-75 219-296 (649)
73 PRK11907 bifunctional 2',3'-cy 95.9 0.018 3.8E-07 46.4 5.3 60 16-75 311-391 (814)
74 cd00842 MPP_ASMase acid sphing 95.9 0.047 1E-06 38.3 6.9 58 18-75 216-288 (296)
75 cd08162 MPP_PhoA_N Synechococc 95.6 0.026 5.7E-07 40.5 4.6 53 16-74 209-284 (313)
76 PHA03008 hypothetical protein; 95.5 0.077 1.7E-06 36.3 6.3 55 16-70 161-221 (234)
77 cd07382 MPP_DR1281 Deinococcus 95.0 0.12 2.5E-06 36.3 6.4 33 44-76 166-201 (255)
78 COG1409 Icc Predicted phosphoh 95.0 0.15 3.4E-06 34.7 6.9 35 34-68 169-207 (301)
79 TIGR01530 nadN NAD pyrophospha 94.7 0.075 1.6E-06 40.9 5.0 36 16-57 184-219 (550)
80 COG0737 UshA 5'-nucleotidase/2 94.0 0.053 1.1E-06 41.2 2.9 60 15-75 204-271 (517)
81 COG1408 Predicted phosphohydro 93.9 0.062 1.4E-06 38.2 3.0 36 15-59 192-227 (284)
82 cd07384 MPP_Cdc1_like Saccharo 93.8 0.13 2.9E-06 33.7 4.2 35 41-75 131-169 (171)
83 cd07387 MPP_PolD2_C PolD2 (DNA 93.3 1.1 2.4E-05 31.5 8.4 65 10-74 137-238 (257)
84 cd08164 MPP_Ted1 Saccharomyces 93.1 0.084 1.8E-06 35.7 2.4 19 42-60 142-160 (193)
85 PRK13625 bis(5'-nucleosyl)-tet 92.7 0.56 1.2E-05 32.4 6.2 30 44-73 184-213 (245)
86 cd08166 MPP_Cdc1_like_1 unchar 92.1 0.31 6.8E-06 33.0 4.1 48 19-68 112-159 (195)
87 cd08163 MPP_Cdc1 Saccharomyces 91.2 0.63 1.4E-05 32.5 5.1 26 34-59 206-231 (257)
88 cd08165 MPP_MPPE1 human MPPE1 91.1 0.86 1.9E-05 29.3 5.3 33 42-74 120-153 (156)
89 TIGR00282 metallophosphoestera 91.1 1.1 2.4E-05 31.7 6.3 32 37-68 162-196 (266)
90 cd00844 MPP_Dbr1_N Dbr1 RNA la 90.0 0.69 1.5E-05 32.6 4.4 45 16-60 165-232 (262)
91 PRK09982 universal stress prot 89.5 0.81 1.7E-05 28.6 4.1 32 17-55 82-113 (142)
92 COG0420 SbcD DNA repair exonuc 89.0 0.37 8.1E-06 35.2 2.6 62 15-76 165-233 (390)
93 cd07380 MPP_CWF19_N Schizosacc 88.7 0.81 1.8E-05 29.6 3.7 52 16-71 69-133 (150)
94 COG1168 MalY Bifunctional PLP- 88.1 0.28 6.1E-06 36.5 1.4 49 42-91 198-248 (388)
95 TIGR03768 RPA4764 metallophosp 87.7 1.1 2.5E-05 34.3 4.5 38 35-72 389-436 (492)
96 KOG2310|consensus 86.2 1.8 3.9E-05 33.9 4.8 53 15-72 210-270 (646)
97 KOG1378|consensus 85.4 1.9 4.2E-05 32.8 4.6 41 17-57 294-345 (452)
98 PRK15005 universal stress prot 81.4 4 8.7E-05 24.9 4.3 31 18-55 87-117 (144)
99 PHA02546 47 endonuclease subun 80.3 2.9 6.2E-05 30.3 3.7 44 43-90 178-221 (340)
100 PRK15456 universal stress prot 79.4 6 0.00013 24.3 4.6 32 18-55 85-116 (142)
101 KOG2679|consensus 79.2 8.4 0.00018 28.0 5.7 61 15-75 208-276 (336)
102 COG2843 PgsA Putative enzyme o 77.9 11 0.00024 28.1 6.2 51 17-67 226-281 (372)
103 COG0796 MurI Glutamate racemas 77.7 0.73 1.6E-05 32.8 0.0 32 40-71 173-210 (269)
104 KOG3947|consensus 77.4 4.4 9.5E-05 29.2 3.8 60 14-73 211-282 (305)
105 cd00144 MPP_PPP_family phospho 76.8 6.4 0.00014 26.1 4.4 35 38-72 174-211 (225)
106 TIGR00067 glut_race glutamate 73.5 1.5 3.4E-05 30.5 0.8 30 42-71 170-205 (251)
107 KOG3818|consensus 73.0 3.6 7.7E-05 31.6 2.6 32 44-75 472-504 (525)
108 cd01984 AANH_like Adenine nucl 71.3 6.3 0.00014 22.2 2.9 27 33-59 37-63 (86)
109 PRK15118 universal stress glob 69.1 13 0.00028 22.7 4.2 30 19-54 84-113 (144)
110 TIGR00619 sbcd exonuclease Sbc 68.4 2.4 5.2E-05 29.4 0.8 31 44-75 213-243 (253)
111 cd07421 MPP_Rhilphs Rhilph pho 67.9 22 0.00048 25.9 5.6 26 45-72 255-280 (304)
112 PLN00416 carbonate dehydratase 65.9 8.2 0.00018 27.3 3.1 15 43-57 137-152 (258)
113 PRK10116 universal stress prot 62.9 20 0.00044 21.7 4.2 34 18-57 82-115 (142)
114 PRK13015 3-dehydroquinate dehy 60.9 9 0.00019 24.9 2.4 57 17-73 2-79 (146)
115 PRK11175 universal stress prot 60.7 14 0.0003 25.6 3.5 34 19-58 242-275 (305)
116 PRK10966 exonuclease subunit S 60.0 16 0.00035 27.2 3.9 46 44-90 220-265 (407)
117 cd01988 Na_H_Antiporter_C The 58.7 16 0.00034 21.6 3.1 26 33-58 83-108 (132)
118 cd01987 USP_OKCHK USP domain i 58.2 18 0.00039 21.4 3.3 26 33-58 74-99 (124)
119 PF01220 DHquinase_II: Dehydro 58.0 6.7 0.00015 25.3 1.4 58 17-74 1-79 (140)
120 PRK03011 butyrate kinase; Prov 56.8 6.5 0.00014 28.9 1.4 11 64-74 4-14 (358)
121 cd01715 ETF_alpha The electron 56.6 15 0.00033 23.6 3.0 22 34-55 73-94 (168)
122 PRK10200 putative racemase; Pr 56.5 11 0.00025 25.8 2.5 20 41-60 186-205 (230)
123 COG1922 WecG Teichoic acid bio 56.2 18 0.0004 25.5 3.5 36 15-51 133-168 (253)
124 PLN02154 carbonic anhydrase 55.2 17 0.00036 26.3 3.2 15 42-56 162-177 (290)
125 cd01986 Alpha_ANH_like Adenine 54.6 19 0.0004 21.1 2.9 23 36-58 53-75 (103)
126 PF01171 ATP_bind_3: PP-loop f 53.8 14 0.00031 24.0 2.5 19 35-53 87-105 (182)
127 PF00582 Usp: Universal stress 53.6 42 0.00091 19.3 4.5 34 18-57 82-115 (140)
128 cd01992 PP-ATPase N-terminal d 53.6 18 0.00038 23.2 2.9 21 35-55 87-107 (185)
129 cd01985 ETF The electron trans 53.3 17 0.00037 23.5 2.8 22 34-55 81-102 (181)
130 cd00884 beta_CA_cladeB Carboni 52.6 19 0.00041 24.2 2.9 15 42-56 83-98 (190)
131 COG0589 UspA Universal stress 51.9 50 0.0011 19.7 5.0 37 18-59 92-128 (154)
132 cd00883 beta_CA_cladeA Carboni 51.1 21 0.00046 23.6 3.0 15 43-57 78-93 (182)
133 PF01012 ETF: Electron transfe 50.9 16 0.00035 23.2 2.4 22 34-55 80-101 (164)
134 PF06925 MGDG_synth: Monogalac 50.6 20 0.00044 22.9 2.8 20 35-54 80-99 (169)
135 PF02844 GARS_N: Phosphoribosy 50.3 24 0.00051 21.4 2.9 34 18-51 27-69 (100)
136 TIGR01088 aroQ 3-dehydroquinat 50.3 14 0.0003 23.9 1.9 56 18-73 1-77 (141)
137 PRK00865 glutamate racemase; P 50.1 15 0.00033 25.5 2.3 31 41-71 174-210 (261)
138 PRK05395 3-dehydroquinate dehy 49.9 16 0.00034 23.8 2.1 57 17-73 2-79 (146)
139 TIGR02432 lysidine_TilS_N tRNA 49.7 22 0.00047 23.0 2.9 21 35-55 90-110 (189)
140 cd03413 CbiK_C Anaerobic cobal 48.4 30 0.00064 20.8 3.1 25 18-42 3-27 (103)
141 KOG2836|consensus 48.3 75 0.0016 20.8 5.0 67 6-75 6-75 (173)
142 PF01764 Lipase_3: Lipase (cla 48.1 20 0.00044 21.6 2.4 10 44-53 63-72 (140)
143 COG0037 MesJ tRNA(Ile)-lysidin 48.0 22 0.00047 24.7 2.8 21 35-55 111-131 (298)
144 TIGR00035 asp_race aspartate r 47.5 20 0.00044 24.3 2.5 19 42-60 185-203 (229)
145 KOG1432|consensus 47.5 95 0.0021 23.3 6.0 40 36-75 291-332 (379)
146 PF03808 Glyco_tran_WecB: Glyc 47.1 55 0.0012 21.3 4.4 35 16-51 74-108 (172)
147 cd00466 DHQase_II Dehydroquina 46.6 15 0.00033 23.7 1.7 56 18-73 1-77 (140)
148 PF14360 PAP2_C: PAP2 superfam 46.2 8.8 0.00019 21.8 0.5 9 45-53 3-11 (74)
149 PLN03014 carbonic anhydrase 45.9 25 0.00054 26.1 2.9 15 42-56 216-231 (347)
150 cd01993 Alpha_ANH_like_II This 45.9 28 0.0006 22.2 2.9 21 35-55 97-117 (185)
151 COG0757 AroQ 3-dehydroquinate 45.6 32 0.0007 22.3 3.1 57 18-74 2-79 (146)
152 smart00863 tRNA_SAD Threonyl a 44.0 11 0.00024 18.6 0.6 28 44-71 8-35 (44)
153 PTZ00235 DNA polymerase epsilo 44.0 40 0.00088 24.4 3.7 33 43-75 233-271 (291)
154 cd06533 Glyco_transf_WecG_TagA 44.0 49 0.0011 21.5 3.9 36 15-51 71-106 (171)
155 COG0112 GlyA Glycine/serine hy 43.2 40 0.00087 25.6 3.6 27 32-58 154-180 (413)
156 TIGR02855 spore_yabG sporulati 42.5 25 0.00055 25.3 2.4 25 31-55 140-165 (283)
157 COG1407 Predicted ICC-like pho 41.5 56 0.0012 22.9 4.0 29 17-58 129-157 (235)
158 cd01989 STK_N The N-terminal d 40.8 58 0.0012 19.7 3.7 26 33-58 92-117 (146)
159 PRK11070 ssDNA exonuclease Rec 40.3 35 0.00075 26.9 3.1 37 38-75 145-181 (575)
160 cd01714 ETF_beta The electron 40.1 36 0.00079 22.8 2.8 21 35-55 99-119 (202)
161 COG3426 Butyrate kinase [Energ 40.0 18 0.00039 26.5 1.4 11 64-74 5-15 (358)
162 PF00837 T4_deiodinase: Iodoth 39.9 10 0.00023 26.5 0.2 16 60-75 100-115 (237)
163 PRK10437 carbonic anhydrase; P 38.9 44 0.00095 23.1 3.1 11 46-56 92-102 (220)
164 cd07413 MPP_PA3087 Pseudomonas 37.4 38 0.00083 22.9 2.6 28 46-73 178-207 (222)
165 PF02579 Nitro_FeMo-Co: Dinitr 36.9 45 0.00097 18.8 2.6 24 34-57 43-66 (94)
166 PLN03006 carbonate dehydratase 36.9 43 0.00093 24.4 2.9 16 42-57 168-184 (301)
167 PF01784 NIF3: NIF3 (NGG1p int 34.9 73 0.0016 21.8 3.8 30 17-53 171-200 (241)
168 COG0288 CynT Carbonic anhydras 34.8 50 0.0011 22.5 2.9 16 42-57 88-104 (207)
169 PF05582 Peptidase_U57: YabG p 34.7 30 0.00065 25.0 1.8 24 32-55 142-166 (287)
170 PRK03359 putative electron tra 34.6 26 0.00057 24.6 1.5 20 33-52 101-120 (256)
171 PF06874 FBPase_2: Firmicute f 34.6 1.3E+02 0.0028 24.3 5.4 58 33-91 508-574 (640)
172 cd08059 MPN_prok_mb Mpr1p, Pad 34.4 97 0.0021 17.9 4.2 17 39-55 50-66 (101)
173 PRK08349 hypothetical protein; 34.2 51 0.0011 21.7 2.8 19 35-53 96-114 (198)
174 PHA02239 putative protein phos 34.0 52 0.0011 22.7 2.9 55 18-73 157-221 (235)
175 PF07742 BTG: BTG family; Int 33.9 24 0.00051 22.0 1.1 15 64-78 95-109 (118)
176 cd01990 Alpha_ANH_like_I This 33.7 55 0.0012 21.4 2.9 21 35-55 86-106 (202)
177 cd00293 USP_Like Usp: Universa 33.1 96 0.0021 17.5 3.7 25 33-57 82-106 (130)
178 cd03379 beta_CA_cladeD Carboni 32.5 54 0.0012 20.7 2.6 13 46-58 57-69 (142)
179 PF07355 GRDB: Glycine/sarcosi 31.4 58 0.0012 24.2 2.9 20 35-54 71-90 (349)
180 TIGR01282 nifD nitrogenase mol 31.3 85 0.0018 23.9 3.9 40 32-72 392-431 (466)
181 TIGR00361 ComEC_Rec2 DNA inter 31.3 1.2E+02 0.0027 24.1 4.9 59 10-71 568-633 (662)
182 PF07973 tRNA_SAD: Threonyl an 31.1 19 0.0004 18.2 0.2 24 44-67 8-31 (44)
183 TIGR03350 type_VI_ompA type VI 30.5 61 0.0013 20.0 2.6 21 35-55 51-71 (137)
184 cd03378 beta_CA_cladeC Carboni 30.3 53 0.0011 21.3 2.3 14 42-55 88-102 (154)
185 PF13277 YmdB: YmdB-like prote 30.3 1.4E+02 0.0031 21.1 4.6 29 40-68 160-191 (253)
186 COG1200 RecG RecG-like helicas 30.2 85 0.0018 25.5 3.8 36 14-51 505-540 (677)
187 PLN03019 carbonic anhydrase 29.1 64 0.0014 23.8 2.8 11 46-56 216-226 (330)
188 cd01712 ThiI ThiI is required 28.9 73 0.0016 20.4 2.9 19 36-54 95-113 (177)
189 cd03171 SORL_Dfx_classI Supero 28.8 71 0.0015 18.4 2.5 22 54-75 4-25 (78)
190 PRK15219 carbonic anhydrase; P 28.3 74 0.0016 22.3 2.9 15 42-56 139-154 (245)
191 cd01996 Alpha_ANH_like_III Thi 28.3 72 0.0016 19.8 2.7 21 35-55 93-113 (154)
192 PF06967 Mo-nitro_C: Mo-depend 28.2 27 0.00059 20.6 0.6 16 44-59 35-52 (84)
193 PRK10696 tRNA 2-thiocytidine b 27.8 76 0.0016 21.9 2.9 20 35-54 122-141 (258)
194 PRK10040 hypothetical protein; 27.8 37 0.00081 18.1 1.0 15 62-76 33-47 (52)
195 TIGR00320 dfx_rbo desulfoferro 27.5 72 0.0016 20.0 2.5 23 53-75 48-70 (125)
196 PRK12342 hypothetical protein; 27.5 75 0.0016 22.4 2.8 19 34-52 99-117 (254)
197 TIGR01250 pro_imino_pep_2 prol 27.1 1.2E+02 0.0026 19.7 3.7 35 16-50 25-59 (288)
198 COG0400 Predicted esterase [Ge 27.0 1.2E+02 0.0025 20.7 3.6 39 11-49 141-181 (207)
199 COG1647 Esterase/lipase [Gener 26.7 1.5E+02 0.0033 20.9 4.2 49 7-56 6-57 (243)
200 PF01522 Polysacc_deac_1: Poly 26.7 98 0.0021 18.0 3.0 23 34-57 48-70 (123)
201 PRK14665 mnmA tRNA-specific 2- 26.5 1.3E+02 0.0029 22.1 4.1 18 36-53 105-122 (360)
202 PF01177 Asp_Glu_race: Asp/Glu 26.3 87 0.0019 20.4 2.9 30 41-70 172-208 (216)
203 cd07373 2A5CPDO_A The alpha su 25.9 1.5E+02 0.0033 20.7 4.2 10 18-27 5-14 (271)
204 cd01995 ExsB ExsB is a transcr 25.9 84 0.0018 19.9 2.7 20 36-55 68-87 (169)
205 PF07179 SseB: SseB protein N- 25.9 39 0.00084 20.0 1.0 42 31-73 69-112 (124)
206 TIGR00032 argG argininosuccina 25.4 85 0.0019 23.5 2.9 21 35-55 97-117 (394)
207 TIGR01285 nifN nitrogenase mol 24.8 48 0.001 24.9 1.6 41 32-73 361-401 (432)
208 TIGR00419 tim triosephosphate 24.7 71 0.0015 21.7 2.3 20 37-56 74-93 (205)
209 PF09871 DUF2098: Uncharacteri 24.7 27 0.00058 20.9 0.2 29 63-91 8-36 (91)
210 PF10686 DUF2493: Protein of u 24.6 1.4E+02 0.003 16.7 4.1 14 37-50 50-63 (71)
211 cd04502 SGNH_hydrolase_like_7 24.5 48 0.001 20.8 1.4 29 47-75 2-34 (171)
212 KOG1625|consensus 24.3 64 0.0014 25.6 2.2 34 43-76 534-567 (600)
213 TIGR01917 gly_red_sel_B glycin 24.3 91 0.002 23.9 2.9 19 35-53 67-85 (431)
214 cd00382 beta_CA Carbonic anhyd 24.0 64 0.0014 19.7 1.8 13 43-55 56-69 (119)
215 cd00851 MTH1175 This uncharact 23.8 1.1E+02 0.0024 17.4 2.8 26 34-59 53-78 (103)
216 TIGR01918 various_sel_PB selen 23.6 95 0.0021 23.8 2.9 19 35-53 67-85 (431)
217 PF00691 OmpA: OmpA family; I 23.6 98 0.0021 17.5 2.5 21 36-56 20-42 (97)
218 PRK00042 tpiA triosephosphate 23.6 73 0.0016 22.3 2.2 38 36-73 78-130 (250)
219 cd07422 MPP_ApaH Escherichia c 23.5 1.7E+02 0.0037 20.5 4.0 22 4-27 101-122 (257)
220 PF11187 DUF2974: Protein of u 23.3 1E+02 0.0022 21.1 2.8 17 37-53 76-92 (224)
221 PRK14567 triosephosphate isome 22.9 84 0.0018 22.2 2.4 37 37-73 78-129 (253)
222 cd00311 TIM Triosephosphate is 22.6 79 0.0017 22.0 2.2 22 37-58 77-98 (242)
223 PLN02561 triosephosphate isome 22.6 79 0.0017 22.3 2.2 36 37-72 81-131 (253)
224 COG2248 Predicted hydrolase (m 22.5 3.1E+02 0.0067 19.9 5.4 16 37-52 194-209 (304)
225 PRK13820 argininosuccinate syn 22.5 1.1E+02 0.0023 23.1 3.0 21 35-55 100-120 (394)
226 PF00753 Lactamase_B: Metallo- 22.5 1.2E+02 0.0026 18.4 2.9 13 40-52 182-194 (194)
227 cd01976 Nitrogenase_MoFe_alpha 22.4 1.1E+02 0.0025 22.8 3.1 40 32-72 357-396 (421)
228 PRK14566 triosephosphate isome 21.8 85 0.0018 22.3 2.2 23 36-58 87-109 (260)
229 PRK14664 tRNA-specific 2-thiou 21.7 1.1E+02 0.0024 22.7 2.9 21 35-55 99-119 (362)
230 PRK08384 thiamine biosynthesis 21.4 1.1E+02 0.0024 22.9 2.8 22 35-56 275-296 (381)
231 PF00484 Pro_CA: Carbonic anhy 21.4 41 0.0009 21.1 0.6 14 42-55 51-65 (153)
232 PRK06667 motB flagellar motor 21.2 1.1E+02 0.0023 21.3 2.6 20 36-55 148-170 (252)
233 cd07363 45_DOPA_Dioxygenase Th 21.0 1.8E+02 0.0039 20.1 3.7 35 19-53 3-43 (253)
234 COG2885 OmpA Outer membrane pr 21.0 1.1E+02 0.0025 19.9 2.6 23 35-57 104-127 (190)
235 TIGR00668 apaH bis(5'-nucleosy 20.8 1.8E+02 0.0039 20.8 3.7 29 5-36 104-132 (279)
236 PF10137 TIR-like: Predicted n 20.8 1.1E+02 0.0025 19.1 2.5 15 63-77 96-110 (125)
237 PTZ00333 triosephosphate isome 20.6 92 0.002 21.9 2.2 23 37-59 82-104 (255)
238 PRK15492 triosephosphate isome 20.3 1E+02 0.0022 21.8 2.4 37 36-72 86-137 (260)
239 PRK00143 mnmA tRNA-specific 2- 20.2 1.1E+02 0.0024 22.2 2.7 20 36-55 108-127 (346)
240 PRK01584 alanyl-tRNA synthetas 20.0 77 0.0017 25.2 1.9 31 45-75 554-584 (594)
241 PF14252 DUF4347: Domain of un 20.0 1.2E+02 0.0027 19.8 2.6 35 19-53 52-100 (165)
No 1
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=148.43 Aligned_cols=88 Identities=35% Similarity=0.488 Sum_probs=80.9
Q ss_pred CCCC----CCCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCC
Q psy10860 1 MKGT----SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAF 76 (91)
Q Consensus 1 ~~~~----~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~ 76 (91)
||+. .+|+...++++|+||+++||+.+.+..+...+..++++.++|++||||||+|..++.+++++|||||++.||
T Consensus 62 ~D~~~~~~~~p~~~~~~~~g~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~~~~~~i~~vNPGS~s~pr 141 (172)
T COG0622 62 CDGEVDQEELPEELVLEVGGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAEKVGGILLVNPGSVSGPR 141 (172)
T ss_pred CCCccccccCChhHeEEECCEEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCcccEEEECCEEEEcCCCcCCCC
Confidence 6755 799999999999999999999988888888999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEeeC
Q psy10860 77 NPLEPLNGRYANVKS 91 (91)
Q Consensus 77 ~~~~~~~a~Y~il~~ 91 (91)
++ . .++|++|+.
T Consensus 142 ~~-~--~~sy~il~~ 153 (172)
T COG0622 142 GG-N--PASYAILDV 153 (172)
T ss_pred CC-C--CcEEEEEEc
Confidence 87 3 569999973
No 2
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.93 E-value=1.5e-24 Score=143.81 Aligned_cols=90 Identities=66% Similarity=1.152 Sum_probs=77.1
Q ss_pred CCCC-CCCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCC-
Q psy10860 1 MKGT-SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNP- 78 (91)
Q Consensus 1 ~~~~-~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~- 78 (91)
||+. .||+...++++|++|+++||++..++...+.+.++++..++|+++|||||+|.....+++++|||||++.|+.+
T Consensus 62 ~D~~~~lp~~~~~~~~g~~i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p~~~~~~g~~viNPGSv~~~~~~~ 141 (178)
T cd07394 62 FDENLNYPETKVITVGQFKIGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKFEAFEHEGKFFINPGSATGAFSPL 141 (178)
T ss_pred CCccccCCCcEEEEECCEEEEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcceEEEECCEEEEECCCCCCCCCCC
Confidence 4533 68999999999999999999987776667777777778899999999999999999999999999999988654
Q ss_pred CCCCCceEEEee
Q psy10860 79 LEPLNGRYANVK 90 (91)
Q Consensus 79 ~~~~~a~Y~il~ 90 (91)
+..+.++|+||+
T Consensus 142 ~~~~~~syail~ 153 (178)
T cd07394 142 DPNVIPSFVLMD 153 (178)
T ss_pred CCCCCCeEEEEE
Confidence 223468999997
No 3
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.86 E-value=9.8e-21 Score=122.51 Aligned_cols=84 Identities=38% Similarity=0.541 Sum_probs=73.4
Q ss_pred CCCCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCCCCC
Q psy10860 4 TSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLN 83 (91)
Q Consensus 4 ~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~~~~ 83 (91)
..+|....++++|.+|+++||++..+....+.+..+++..++|+++|||||.+...+.++++++||||++.|+.+. .
T Consensus 66 ~~~~~~~~~~~~g~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~~~~~~~~iNpGs~~~~~~~~---~ 142 (158)
T TIGR00040 66 DELPEEEIFEAEGIDFGLVHGDLVYPRGDLLVLEYLAKELGVDVLIFGHTHIPVAEELRGILLINPGSLTGPRNGN---T 142 (158)
T ss_pred hhCCcceEEEECCEEEEEEeCcccccCCCHHHHHHHHhccCCCEEEECCCCCCccEEECCEEEEECCccccccCCC---C
Confidence 4689999999999999999999766666666677777778899999999999999999999999999999998752 5
Q ss_pred ceEEEee
Q psy10860 84 GRYANVK 90 (91)
Q Consensus 84 a~Y~il~ 90 (91)
++|++++
T Consensus 143 ~~~~il~ 149 (158)
T TIGR00040 143 PSYAILD 149 (158)
T ss_pred CeEEEEE
Confidence 7999987
No 4
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.85 E-value=1.3e-20 Score=121.08 Aligned_cols=82 Identities=27% Similarity=0.295 Sum_probs=69.5
Q ss_pred CCCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCCCCCc
Q psy10860 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLNG 84 (91)
Q Consensus 5 ~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~~~~a 84 (91)
.+|....++++|.+|+++||++.......+. .++++..++|++++||||++.....++++++||||+++|++. +.+
T Consensus 64 ~~p~~~~~~~~g~~i~v~Hg~~~~~~~~~~~-~~~~~~~~~d~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~---~~~ 139 (155)
T cd00841 64 ILPEEAVLEIGGKRIFLTHGHLYGVKNGLDR-LYLAKEGGADVVLYGHTHIPVIEKIGGVLLLNPGSLSLPRGG---GPP 139 (155)
T ss_pred cCCceEEEEECCEEEEEECCcccccccchhh-hhhhhhcCCCEEEECcccCCccEEECCEEEEeCCCccCcCCC---CCC
Confidence 6899999999999999999998755433333 445566789999999999999988999999999999999863 389
Q ss_pred eEEEee
Q psy10860 85 RYANVK 90 (91)
Q Consensus 85 ~Y~il~ 90 (91)
+|++++
T Consensus 140 ~~~i~~ 145 (155)
T cd00841 140 TYAILE 145 (155)
T ss_pred eEEEEE
Confidence 999987
No 5
>KOG3325|consensus
Probab=99.80 E-value=4.9e-19 Score=114.41 Aligned_cols=88 Identities=69% Similarity=1.226 Sum_probs=79.8
Q ss_pred CCCCCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCC--
Q psy10860 3 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLE-- 80 (91)
Q Consensus 3 ~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~-- 80 (91)
...+|+...++++.+||.+|||++.-||.+++.|..++++.++|+++.||||....++.+|+.+|||||+++.++...
T Consensus 66 ~~~yP~~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldvDILl~G~Th~f~Aye~eg~ffvnPGSaTGAfn~~~t~ 145 (183)
T KOG3325|consen 66 NLKYPENKVVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDVDILLTGHTHKFEAYEHEGKFFVNPGSATGAFNVSDTD 145 (183)
T ss_pred cccCCccceEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCCcEEEeCCceeEEEEEeCCcEEeCCCcccCCCcccccC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred CCCceEEEee
Q psy10860 81 PLNGRYANVK 90 (91)
Q Consensus 81 ~~~a~Y~il~ 90 (91)
+..|||++++
T Consensus 146 ~~~PSFvLmD 155 (183)
T KOG3325|consen 146 IIVPSFVLMD 155 (183)
T ss_pred CCCCceEEEE
Confidence 2468999876
No 6
>PRK09453 phosphodiesterase; Provisional
Probab=99.80 E-value=6.3e-19 Score=116.48 Aligned_cols=72 Identities=31% Similarity=0.326 Sum_probs=59.5
Q ss_pred eEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCCCCCceEEE
Q psy10860 9 KKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLNGRYAN 88 (91)
Q Consensus 9 ~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~~~~a~Y~i 88 (91)
...++++|.+|+++||++..+ +. +++..++|++||||||.|..++.++++++||||++.|+ + .+.++|++
T Consensus 90 ~~~~~l~g~~i~l~HG~~~~~----~~---~~~~~~~d~vi~GHtH~p~~~~~~~~~~iNpGs~~~p~-~--~~~~s~~i 159 (182)
T PRK09453 90 YQQVLLEGKRLFLTHGHLYGP----EN---LPALHDGDVLVYGHTHIPVAEKQGGIILFNPGSVSLPK-G--GYPASYGI 159 (182)
T ss_pred eEEEEECCeEEEEECCCCCCh----hh---cccccCCCEEEECCCCCCcceEECCEEEEECCCccccC-C--CCCCeEEE
Confidence 356788999999999987542 11 13456789999999999999999999999999999998 3 24789999
Q ss_pred ee
Q psy10860 89 VK 90 (91)
Q Consensus 89 l~ 90 (91)
++
T Consensus 160 l~ 161 (182)
T PRK09453 160 LD 161 (182)
T ss_pred EE
Confidence 87
No 7
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.69 E-value=7.1e-16 Score=98.06 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=70.3
Q ss_pred CCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCCCCCce
Q psy10860 6 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLNGR 85 (91)
Q Consensus 6 lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~~~~a~ 85 (91)
++....+++++.+|+++||++..+....+.+.+.+...+++++++||+|.+...+.+++.++||||+++++.+. ..+
T Consensus 71 ~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~~~~~~~~~Gs~~~~~~~~---~~~ 147 (156)
T PF12850_consen 71 LLDALRLTIDGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVFKIGGIHVINPGSIGGPRHGD---QSG 147 (156)
T ss_dssp SHSEEEEEETTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEEEETTEEEEEE-GSSS-SSSS---SEE
T ss_pred cccceeeeecCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEEEECCEEEEECCcCCCCCCCC---CCE
Confidence 45677889999999999999987766777777777789999999999999999889999999999999998653 789
Q ss_pred EEEee
Q psy10860 86 YANVK 90 (91)
Q Consensus 86 Y~il~ 90 (91)
|++++
T Consensus 148 ~~i~~ 152 (156)
T PF12850_consen 148 YAILD 152 (156)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99987
No 8
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.21 E-value=3.7e-11 Score=75.77 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=45.1
Q ss_pred ECCEEEEEecCCCCCCC--------CCHHHHHHHHhhCCCCEEEEcCccCcc-EE----EECCEEEEccC
Q psy10860 14 VGQFRIGLCHGHDIIPW--------GDPEALALLQRQLDVDILISGHTHKFE-AY----EHENKFYINPG 70 (91)
Q Consensus 14 ~~g~~i~~~Hg~~~~~~--------~~~~~l~~~~~~~~~dvvi~GHtH~~~-~~----~~~~~~~iNPG 70 (91)
.++.+|+++||+++... ...+.+.+++++.++|+++|||||.++ .. +.+++++|||+
T Consensus 66 ~~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~t~~in~~ 135 (135)
T cd07379 66 PEDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAERVLDTDGETLFVNAS 135 (135)
T ss_pred CCCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcCceeEecccCCCEEEEeCC
Confidence 46778999999987542 223456777778889999999999997 55 56899999996
No 9
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.19 E-value=7.4e-11 Score=79.41 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=50.3
Q ss_pred CCCCceEEEEECCEEEEEecCCCCCCCC---------CH----------HHHHHH-H-hhCCCCEEEEcCccCccEEEEC
Q psy10860 4 TSYPEKKVVTVGQFRIGLCHGHDIIPWG---------DP----------EALALL-Q-RQLDVDILISGHTHKFEAYEHE 62 (91)
Q Consensus 4 ~~lP~~~~~~~~g~~i~~~Hg~~~~~~~---------~~----------~~l~~~-~-~~~~~dvvi~GHtH~~~~~~~~ 62 (91)
.+||...+++.++.+++++||.+..... .. ..+... . ...+++++||||||.+...+.+
T Consensus 107 ~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~iV~GHTh~~~~~~~~ 186 (207)
T cd07424 107 EQLPLAIEVETEGGKVGIVHADYPSDDWSDGVGAVTLRPEDIEELLWSRTRIQKAQTQPIKGVDAVVHGHTPVKRPLRLG 186 (207)
T ss_pred HhCCeEEEEEeCCCEEEEECCCCCcchhhhhhhccccCcccceeeeeccchhhhcCccccCCCCEEEECCCCCCcceEEC
Confidence 4689888888888899999996531110 00 011100 1 1124689999999999999899
Q ss_pred CEEEEccCCcCCC
Q psy10860 63 NKFYINPGSATGA 75 (91)
Q Consensus 63 ~~~~iNPGS~~~~ 75 (91)
++++|||||++..
T Consensus 187 ~~i~ID~Gsv~gg 199 (207)
T cd07424 187 NVLYIDTGAVFDG 199 (207)
T ss_pred CEEEEECCCCCCC
Confidence 9999999999743
No 10
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.13 E-value=4.6e-10 Score=77.07 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=49.7
Q ss_pred CCEEEEEecCCCCCC---CCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIP---WGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~---~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
.+..|+++|..|+.. ......++++.++.++.++||||.| ...++.++++++|||++...
T Consensus 147 ~~~~VLv~H~PP~g~g~~h~GS~alr~~I~~~~P~l~i~GHih-~~~~~~g~t~vvNpg~~~~g 209 (224)
T cd07388 147 DYRKVFLFHTPPYHKGLNEQGSHEVAHLIKTHNPLVVLVGGKG-QKHELLGASWVVVPGDLSEG 209 (224)
T ss_pred CCCeEEEECCCCCCCCCCccCHHHHHHHHHHhCCCEEEEcCCc-eeEEEeCCEEEECCCcccCC
Confidence 346899999999764 4567788889999999999999999 45577899999999996543
No 11
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.12 E-value=2.4e-10 Score=77.82 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=50.6
Q ss_pred CCCCceEEEEECCEEEEEecCCC-CCCC----C-C-------HHHHHHHHh-----hCCCCEEEEcCccCccEEEECCEE
Q psy10860 4 TSYPEKKVVTVGQFRIGLCHGHD-IIPW----G-D-------PEALALLQR-----QLDVDILISGHTHKFEAYEHENKF 65 (91)
Q Consensus 4 ~~lP~~~~~~~~g~~i~~~Hg~~-~~~~----~-~-------~~~l~~~~~-----~~~~dvvi~GHtH~~~~~~~~~~~ 65 (91)
++||...+++.++.+++++||+. .... . . .+.+.+..+ ..+.|++||||||.+.....++++
T Consensus 121 ~~LP~~~~~~~~g~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~~~~~~~~~~~~~~vv~GHTh~~~~~~~~~~i 200 (218)
T PRK09968 121 HHLPHIIEITNDNIKYVIAHADYPGDEYDFGKEIAESELLWPVDRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQI 200 (218)
T ss_pred hcCCeEEEEeeCCCcEEEEeCCCCCchhhhccccchhhceeCcHHHhhCccccccccCCCCEEEECCCCcCcceeECCEE
Confidence 47899999999999999999885 2110 0 0 011221111 135689999999999999899999
Q ss_pred EEccCCcC
Q psy10860 66 YINPGSAT 73 (91)
Q Consensus 66 ~iNPGS~~ 73 (91)
+|||||+-
T Consensus 201 ~IDtGs~~ 208 (218)
T PRK09968 201 YIDTGSPK 208 (218)
T ss_pred EEECCCCC
Confidence 99999964
No 12
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.07 E-value=1.1e-09 Score=73.27 Aligned_cols=34 Identities=44% Similarity=0.598 Sum_probs=30.3
Q ss_pred HHhhCCCCEEEEcCccCccEEEECCEEEEccCCc
Q psy10860 39 LQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 72 (91)
Q Consensus 39 ~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~ 72 (91)
.++..++|++|+||||.+...+.+++.++|+||.
T Consensus 184 ~~~~~~~~~~i~GH~H~~~~~~~~~~~~~n~G~W 217 (217)
T cd07398 184 LARRKGVDGVICGHTHRPALHELDGKLYINLGDW 217 (217)
T ss_pred HHHhcCCCEEEECCCCCCCeEEECCEEEEECCCC
Confidence 4456799999999999999998999999999984
No 13
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.05 E-value=7.1e-10 Score=72.24 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=45.4
Q ss_pred CCEEEEEecCCCCCC---------CCCHHHHHHHHhhCCCCEEEEcCccCcc-EEEECCEEEEccC
Q psy10860 15 GQFRIGLCHGHDIIP---------WGDPEALALLQRQLDVDILISGHTHKFE-AYEHENKFYINPG 70 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~---------~~~~~~l~~~~~~~~~dvvi~GHtH~~~-~~~~~~~~~iNPG 70 (91)
++.+|+++|.+|..+ ....+.+.+++++.++++++|||+|.++ ..+.++++++|||
T Consensus 123 ~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 123 AKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred CCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEeccccccceeeeCCeEEecCC
Confidence 467899999998652 1234677778888899999999999987 4468999999998
No 14
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.03 E-value=1.3e-09 Score=74.73 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=51.1
Q ss_pred EEEEecCCCCCC---------CCCHHHHHHHHhhCCCCEEEEcCccCc-cEEEECCEEEEccCCcCCCCCCCCCCCceEE
Q psy10860 18 RIGLCHGHDIIP---------WGDPEALALLQRQLDVDILISGHTHKF-EAYEHENKFYINPGSATGAFNPLEPLNGRYA 87 (91)
Q Consensus 18 ~i~~~Hg~~~~~---------~~~~~~l~~~~~~~~~dvvi~GHtH~~-~~~~~~~~~~iNPGS~~~~~~~~~~~~a~Y~ 87 (91)
+|+++|..|+.. .-....++++.++.++.+.+|||.|.. ...+.++++++|||+++.. +||
T Consensus 140 ~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~~~g---------~yA 210 (226)
T COG2129 140 NILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPLGEG---------RYA 210 (226)
T ss_pred eEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccccCCeEEECCCCccCc---------eEE
Confidence 399999998742 223567888999999999999999985 4677899999999995543 677
Q ss_pred Eee
Q psy10860 88 NVK 90 (91)
Q Consensus 88 il~ 90 (91)
+++
T Consensus 211 ~i~ 213 (226)
T COG2129 211 LIE 213 (226)
T ss_pred EEE
Confidence 765
No 15
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=9.9e-10 Score=75.77 Aligned_cols=69 Identities=32% Similarity=0.351 Sum_probs=55.6
Q ss_pred CCCceEEEEECCEEEEEecCCCCCCC--------------------------------------C---------------
Q psy10860 5 SYPEKKVVTVGQFRIGLCHGHDIIPW--------------------------------------G--------------- 31 (91)
Q Consensus 5 ~lP~~~~~~~~g~~i~~~Hg~~~~~~--------------------------------------~--------------- 31 (91)
-+|+...+++.|++++++||+...+. +
T Consensus 94 l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d 173 (237)
T COG2908 94 LLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAWLQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMD 173 (237)
T ss_pred EcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHH
Confidence 47999999999999999999986431 0
Q ss_pred -CHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcC
Q psy10860 32 -DPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSAT 73 (91)
Q Consensus 32 -~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~ 73 (91)
.++.....++..++|.+|+||||+|.....++..+||.|+.-
T Consensus 174 ~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~lGdW~ 216 (237)
T COG2908 174 VNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGDWV 216 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEecCcch
Confidence 011223345567999999999999999999999999999976
No 16
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.97 E-value=2.2e-09 Score=67.80 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=43.5
Q ss_pred EEEecCCCCCCCC-------CHHHHHHHHhhCCCCEEEEcCccCccEEE----ECCEEEEccCC
Q psy10860 19 IGLCHGHDIIPWG-------DPEALALLQRQLDVDILISGHTHKFEAYE----HENKFYINPGS 71 (91)
Q Consensus 19 i~~~Hg~~~~~~~-------~~~~l~~~~~~~~~dvvi~GHtH~~~~~~----~~~~~~iNPGS 71 (91)
|+++|+++..+.. +.+.+.+.+++.++++++|||+|.++... .+++.++|+||
T Consensus 81 iv~~Hhp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~~~~~~~~~~~aGs 144 (144)
T cd07400 81 IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHGHKHVPYVGNISNAGGGLVVIGAGT 144 (144)
T ss_pred EEEecCCCCCCCccccccCCCHHHHHHHHHHcCCCEEEECCCCCcCeeeccCCCCCEEEEecCC
Confidence 8999998875432 22457777778899999999999998887 67899999997
No 17
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.94 E-value=2.5e-09 Score=67.47 Aligned_cols=54 Identities=24% Similarity=0.172 Sum_probs=43.5
Q ss_pred EEEEEecCCCCCCC-------CCHHHHHHHHhhCCCCEEEEcCccCccEEE-----ECCEEEEccC
Q psy10860 17 FRIGLCHGHDIIPW-------GDPEALALLQRQLDVDILISGHTHKFEAYE-----HENKFYINPG 70 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~-------~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~-----~~~~~~iNPG 70 (91)
.+|+++|+++..+. ...+.+.+++++.++++++|||+|.+.... .+++.++|++
T Consensus 57 ~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~~~~~~~~~t~~~n~~ 122 (129)
T cd07403 57 VDILLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQLRIRRVGDTTVINAY 122 (129)
T ss_pred cCEEEECCCCCcCcCcccccccCHHHHHHHHHHHCCcEEEEcCcCCCcCccccccccCCEEEEeCC
Confidence 67999999886443 345566677777789999999999997655 6899999987
No 18
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.79 E-value=8.7e-08 Score=65.50 Aligned_cols=68 Identities=26% Similarity=0.340 Sum_probs=50.9
Q ss_pred CCceEEEEECCEEEEEecCCCCCCC------------C----------------------------------------CH
Q psy10860 6 YPEKKVVTVGQFRIGLCHGHDIIPW------------G----------------------------------------DP 33 (91)
Q Consensus 6 lP~~~~~~~~g~~i~~~Hg~~~~~~------------~----------------------------------------~~ 33 (91)
+++...++++|.+++++||+.+... . ..
T Consensus 95 l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~l~~~~r~~l~~~~~~~s~~~~~~~~~~~~~~~~ 174 (231)
T TIGR01854 95 LPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFLHLPLAVRVKLARKIRAESRADKQMKSQDIMDVNP 174 (231)
T ss_pred ECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcchhhCCCH
Confidence 5667788999999999999886310 0 01
Q ss_pred HHHHHHHhhCCCCEEEEcCccCccEEEEC----CEEEEccCCcC
Q psy10860 34 EALALLQRQLDVDILISGHTHKFEAYEHE----NKFYINPGSAT 73 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GHtH~~~~~~~~----~~~~iNPGS~~ 73 (91)
+.+.+.++..++|++||||||+|.....+ +..++|-|+..
T Consensus 175 ~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~ 218 (231)
T TIGR01854 175 AEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWY 218 (231)
T ss_pred HHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCc
Confidence 23344455679999999999999877654 67899999873
No 19
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=98.77 E-value=3.2e-08 Score=67.07 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=51.8
Q ss_pred CCEEEEEecCCCCCCC---------CCHHHHHHHHhhC-CCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCC
Q psy10860 15 GQFRIGLCHGHDIIPW---------GDPEALALLQRQL-DVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLE 80 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~---------~~~~~l~~~~~~~-~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~ 80 (91)
+...|+++|..+.... ...+++.+++++. +++++++||+|.....+.+++.++|.||++.++...+
T Consensus 143 ~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~g~~~~~~gs~~~~~~~~~ 218 (240)
T cd07402 143 DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWGGIPLLTAPSTCHQFAPDL 218 (240)
T ss_pred CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEECCEEEEEcCcceeeecCCC
Confidence 3567999998875421 1245566677777 8999999999999888899999999999999876543
No 20
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.73 E-value=4.6e-08 Score=67.55 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=44.7
Q ss_pred EEEEEecCCC-CC---CCCCHHHHHHHHhhCCCCEEEEcCccCcc-EEEECCEEEEccCCcCCCCCCCCCCCceEEEee
Q psy10860 17 FRIGLCHGHD-II---PWGDPEALALLQRQLDVDILISGHTHKFE-AYEHENKFYINPGSATGAFNPLEPLNGRYANVK 90 (91)
Q Consensus 17 ~~i~~~Hg~~-~~---~~~~~~~l~~~~~~~~~dvvi~GHtH~~~-~~~~~~~~~iNPGS~~~~~~~~~~~~a~Y~il~ 90 (91)
.+|+++|-.| .. .....+.++.+.+..++++++|||.|... ..+++.+++|||||+... .|++++
T Consensus 175 r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~G---------~yAvI~ 244 (255)
T PF14582_consen 175 RKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHGKESLGKTLVVNPGSLAEG---------DYAVID 244 (255)
T ss_dssp EEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE--EEETTEEEEE--BGGGT---------EEEEEE
T ss_pred cEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEecccccchhhHHhCCEEEecCcccccC---------ceeEEE
Confidence 6799999888 22 12355678889999999999999999964 467899999999999853 677764
No 21
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.70 E-value=2.7e-07 Score=63.41 Aligned_cols=68 Identities=31% Similarity=0.370 Sum_probs=49.5
Q ss_pred CCCceEEEEECCEEEEEecCCCCCCC----------------------------------------------------CC
Q psy10860 5 SYPEKKVVTVGQFRIGLCHGHDIIPW----------------------------------------------------GD 32 (91)
Q Consensus 5 ~lP~~~~~~~~g~~i~~~Hg~~~~~~----------------------------------------------------~~ 32 (91)
.+|+...++++|.+++++||+..... ..
T Consensus 96 ~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~ 175 (241)
T PRK05340 96 LLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVN 175 (241)
T ss_pred EeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCC
Confidence 36777888999999999999986210 01
Q ss_pred HHHHHHHHhhCCCCEEEEcCccCccEEEEC-C---EEEEccCCc
Q psy10860 33 PEALALLQRQLDVDILISGHTHKFEAYEHE-N---KFYINPGSA 72 (91)
Q Consensus 33 ~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~-~---~~~iNPGS~ 72 (91)
.+.+.+.+++.++|++|+||||+|.....+ + ...+|.|+.
T Consensus 176 ~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lgdw 219 (241)
T PRK05340 176 PEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLGDW 219 (241)
T ss_pred HHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeCCC
Confidence 233455566679999999999999765432 2 368999987
No 22
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.65 E-value=6.2e-08 Score=65.86 Aligned_cols=70 Identities=20% Similarity=0.106 Sum_probs=48.4
Q ss_pred CCCCceEEEEECCEEEEEecCCCCCCCC------C-------HHHHHHHHh---hCCCCEEEEcCccCccEEEECCEEEE
Q psy10860 4 TSYPEKKVVTVGQFRIGLCHGHDIIPWG------D-------PEALALLQR---QLDVDILISGHTHKFEAYEHENKFYI 67 (91)
Q Consensus 4 ~~lP~~~~~~~~g~~i~~~Hg~~~~~~~------~-------~~~l~~~~~---~~~~dvvi~GHtH~~~~~~~~~~~~i 67 (91)
++||...+++.++.+++++|+....... . .+.+.+... ..+.+++|+||||.+.....++++.|
T Consensus 123 ~~LP~~~~~~~~~~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~~~~~~~~~~~~vv~GHT~~~~~~~~~~~i~I 202 (218)
T PRK11439 123 QRLPFILEVHCRTGKHVIAHADYPADVYEWQKDVDLHQVLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYI 202 (218)
T ss_pred hcCCcEEEeeccCCCEEEEeCCCCCCchhhhccCCccceEEcChhhhhccccccccCCCEEEECCccCCCccccCCEEEE
Confidence 4689988888888889999987321110 0 011111111 12567999999999988888999999
Q ss_pred ccCCcC
Q psy10860 68 NPGSAT 73 (91)
Q Consensus 68 NPGS~~ 73 (91)
|+||+-
T Consensus 203 DtGav~ 208 (218)
T PRK11439 203 DTGAVF 208 (218)
T ss_pred ECCCCC
Confidence 999974
No 23
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.54 E-value=9.1e-08 Score=63.84 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=44.0
Q ss_pred CCEEEEEecCCCCCCCCCH----HHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIPWGDP----EALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~----~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
+..+|+++|+......... +.........++|++++||+|.+.....++..+++|||+..-
T Consensus 156 ~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~ypGS~~~~ 220 (223)
T cd00840 156 DDFNILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQIILGGGPPIVYPGSPEGL 220 (223)
T ss_pred CCcEEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCeeecCCCceEEeCCCcccc
Confidence 5578999999764322111 112223346789999999999998877789999999998654
No 24
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.52 E-value=1.5e-07 Score=61.45 Aligned_cols=56 Identities=21% Similarity=0.064 Sum_probs=42.0
Q ss_pred CCCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCC
Q psy10860 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 71 (91)
Q Consensus 5 ~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS 71 (91)
.+|....+++++++|+++|+....... ..++|++|+||||.+..+. .....||+|.
T Consensus 96 ~~~~~~~~~~~~~~i~l~H~~~~~~~~----------~~~~d~vi~GHtH~~~~~~-~~~~~~n~~~ 151 (168)
T cd07390 96 SVLQAVRLKIGGRRVYLSHYPILEWNG----------LDRGSWNLHGHIHSNSPDI-GPPRRINVGV 151 (168)
T ss_pred eeeeEEEEEECCEEEEEEeCCcccCCC----------CCCCeEEEEeeeCCCCCCC-CCCceEEEeE
Confidence 367888999999999999975421110 2577999999999988664 2157899987
No 25
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=98.50 E-value=1.2e-06 Score=60.52 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=53.1
Q ss_pred CEEEEEecCCCCCCC------------CCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCCCCC
Q psy10860 16 QFRIGLCHGHDIIPW------------GDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLN 83 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~------------~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~~~~ 83 (91)
...|+++|..++... ....++..++++.++++++|||+|.......+++.++..++.|.+.... .
T Consensus 166 ~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~~~g~~~~~~~~~~~~~~~~---~ 242 (262)
T cd07395 166 KHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGRYGGLEMVVTSAIGAQLGND---K 242 (262)
T ss_pred CcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceEECCEEEEEcCceecccCCC---C
Confidence 356889997664211 0123566677778999999999999988888999888888888876543 4
Q ss_pred ceEEEee
Q psy10860 84 GRYANVK 90 (91)
Q Consensus 84 a~Y~il~ 90 (91)
+.|.+++
T Consensus 243 ~g~~~~~ 249 (262)
T cd07395 243 SGLRIVK 249 (262)
T ss_pred CCcEEEE
Confidence 6787765
No 26
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=98.46 E-value=8.9e-07 Score=60.60 Aligned_cols=59 Identities=22% Similarity=0.184 Sum_probs=44.7
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccE-----EEECCEEEEccCCcCCC
Q psy10860 17 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEA-----YEHENKFYINPGSATGA 75 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~-----~~~~~~~~iNPGS~~~~ 75 (91)
.+|+++|++++....+...+.+..++.++|++++||+|.+.. ...+|+.+.++.|....
T Consensus 166 ~~i~~~H~p~~~~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~ 229 (232)
T cd07393 166 IKIVMLHYPPANENGDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLN 229 (232)
T ss_pred CEEEEECCCCcCCCCCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcC
Confidence 489999999876554555666676777999999999998754 34788888877765443
No 27
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=98.27 E-value=2.4e-06 Score=58.53 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCCEEEEcCccCccEEEECCEEEEccCCcC
Q psy10860 44 DVDILISGHTHKFEAYEHENKFYINPGSAT 73 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~ 73 (91)
+.+++||||||.+.....++++.||+||+-
T Consensus 181 ~~~~vv~GHt~~~~~~~~~~~i~IDtGav~ 210 (234)
T cd07423 181 GDALVVYGHTPVPEPRWLNNTINIDTGCVF 210 (234)
T ss_pred CCeEEEECCCCCccceEeCCEEEEECCCCC
Confidence 457999999999988888999999999974
No 28
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.26 E-value=7.6e-06 Score=61.99 Aligned_cols=64 Identities=23% Similarity=0.271 Sum_probs=46.6
Q ss_pred EEEECCEEEEEecCCCCC------CC----CCHHHHHHHHh------------------------hCCCCEEEEcCccCc
Q psy10860 11 VVTVGQFRIGLCHGHDII------PW----GDPEALALLQR------------------------QLDVDILISGHTHKF 56 (91)
Q Consensus 11 ~~~~~g~~i~~~Hg~~~~------~~----~~~~~l~~~~~------------------------~~~~dvvi~GHtH~~ 56 (91)
.++++|.+|+++||.... +. ...+.+...++ +.-+|++++||+|.+
T Consensus 373 ~i~l~G~~iLl~HG~~idDl~~~i~~~s~~~p~~~m~~~l~~rHlaPt~p~~~~~~p~~~D~lvi~~~Pdv~~~GH~H~~ 452 (504)
T PRK04036 373 LVNLHGVDVLIYHGRSIDDVISLIPGASYEKPGKAMEELLKRRHLAPIYGGRTPIAPEKEDYLVIDEVPDIFHTGHVHIN 452 (504)
T ss_pred EEEECCEEEEEECCCCHHHHHhhcccccccCHHHHHHHHHHhcccCCCCCCCEEeCcCCCCCEEEecCCCEEEeCCCCcc
Confidence 577899999999998742 11 11223333332 023589999999999
Q ss_pred cEEEECCEEEEccCCcCC
Q psy10860 57 EAYEHENKFYINPGSATG 74 (91)
Q Consensus 57 ~~~~~~~~~~iNPGS~~~ 74 (91)
.....+++++||+||...
T Consensus 453 ~~~~~~g~~~IN~gsf~~ 470 (504)
T PRK04036 453 GYGKYRGVLLINSGTWQA 470 (504)
T ss_pred ceEEECCEEEEECCcccc
Confidence 988899999999999763
No 29
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.25 E-value=3.1e-06 Score=54.68 Aligned_cols=54 Identities=20% Similarity=0.053 Sum_probs=38.3
Q ss_pred CEEEEEecCCCCCC---C------CC---HHHHHHHHhhCCCCEEEEcCccCccEEEECCEE-EEcc
Q psy10860 16 QFRIGLCHGHDIIP---W------GD---PEALALLQRQLDVDILISGHTHKFEAYEHENKF-YINP 69 (91)
Q Consensus 16 g~~i~~~Hg~~~~~---~------~~---~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~-~iNP 69 (91)
+..|+++|..|... + .. .+.+.++.+..++++++|||+|++...+.+++. +.||
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~~~np 163 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDYRIGGTRVLSNQ 163 (166)
T ss_pred CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceEEECCEEEEecC
Confidence 46799999887532 1 11 122445556678999999999999888888865 6776
No 30
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=98.23 E-value=1.2e-05 Score=56.20 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=41.5
Q ss_pred EEEEEecCCCCCC---C------CCHHHHHHHHhhC-CCCEEEEcCccCccEEEECCEEEEccCCcCC
Q psy10860 17 FRIGLCHGHDIIP---W------GDPEALALLQRQL-DVDILISGHTHKFEAYEHENKFYINPGSATG 74 (91)
Q Consensus 17 ~~i~~~Hg~~~~~---~------~~~~~l~~~~~~~-~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~ 74 (91)
..++++|++|... + .+.+++.+++++. +++++++||+|.......+|+.++..+|++.
T Consensus 158 ~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~gi~~~~~ps~~~ 225 (275)
T PRK11148 158 HTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDWNGRRLLATPSTCV 225 (275)
T ss_pred CeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceECCEEEEEcCCCcC
Confidence 4577888877422 1 2345677777775 8899999999999887788998765555553
No 31
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.20 E-value=9.5e-06 Score=56.49 Aligned_cols=70 Identities=17% Similarity=0.064 Sum_probs=49.1
Q ss_pred EEEEEecCCCCCCC-------CCHHHHHHHHhh-CCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCCCCCceEEE
Q psy10860 17 FRIGLCHGHDIIPW-------GDPEALALLQRQ-LDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLNGRYAN 88 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~-------~~~~~l~~~~~~-~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~~~~a~Y~i 88 (91)
..|+++|..+.... ...+.+.+++++ .+++++++||+|.......+|+.++..||++.. . +..+.|++
T Consensus 181 ~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~gi~~~~~~a~~~~-~---~~~~~~~~ 256 (267)
T cd07396 181 KVIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQRHGIHFLTLEGMVET-P---PESNAFGV 256 (267)
T ss_pred eEEEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCccccCCeeEEEechhhcC-C---CCCCceEE
Confidence 45777776543211 123456666666 478999999999998877899988888887766 2 24678887
Q ss_pred ee
Q psy10860 89 VK 90 (91)
Q Consensus 89 l~ 90 (91)
++
T Consensus 257 ~~ 258 (267)
T cd07396 257 VI 258 (267)
T ss_pred EE
Confidence 75
No 32
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=98.18 E-value=2.1e-05 Score=54.54 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=45.7
Q ss_pred CEEEEEecCCCCCCC--C----CHHHHHHHHhhCCCCEEEEcCccCccEEEEC--CEEEEccCCcCCCC
Q psy10860 16 QFRIGLCHGHDIIPW--G----DPEALALLQRQLDVDILISGHTHKFEAYEHE--NKFYINPGSATGAF 76 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~--~----~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~--~~~~iNPGS~~~~~ 76 (91)
..+|+++|.+++... . ..+.+..++++.+++++++||+|.......+ ++.+|..|+.+.+.
T Consensus 167 ~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~~~~~ 235 (277)
T cd07378 167 DWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAGSKAR 235 (277)
T ss_pred CeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCCcccC
Confidence 468999998765321 1 1234566777888999999999998777666 89999999888754
No 33
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=98.18 E-value=5.9e-06 Score=56.56 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=40.5
Q ss_pred CCEEEEEecCCCCC---------C-C------CCHHHHHHHHhhCCCCEEEEcCccCcc-EEEECCEEEEcc
Q psy10860 15 GQFRIGLCHGHDII---------P-W------GDPEALALLQRQLDVDILISGHTHKFE-AYEHENKFYINP 69 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~---------~-~------~~~~~l~~~~~~~~~dvvi~GHtH~~~-~~~~~~~~~iNP 69 (91)
++..|+++|..|.. + + ...+.+.++.+..+++++||||+|... ..+++++.++|+
T Consensus 164 ~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~ 235 (239)
T TIGR03729 164 NKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHNR 235 (239)
T ss_pred CCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEECCEEEEec
Confidence 35689999987632 1 1 123566777777799999999999987 456799999885
No 34
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.04 E-value=3.1e-05 Score=46.51 Aligned_cols=61 Identities=41% Similarity=0.616 Sum_probs=44.9
Q ss_pred EEEEECCEEEEEecCCCCCCCCC--------HHHHHHHHhhCCCCEEEEcCccCccEEE--ECCEEEEccC
Q psy10860 10 KVVTVGQFRIGLCHGHDIIPWGD--------PEALALLQRQLDVDILISGHTHKFEAYE--HENKFYINPG 70 (91)
Q Consensus 10 ~~~~~~g~~i~~~Hg~~~~~~~~--------~~~l~~~~~~~~~dvvi~GHtH~~~~~~--~~~~~~iNPG 70 (91)
..+..++..|+++|..+...... ...+.......+++++++||+|...... ..+..++|+|
T Consensus 61 ~~~~~GNHDi~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~~~~~~~~v~~g 131 (131)
T cd00838 61 VYVVPGNHDILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERREPDGGGTLYINPG 131 (131)
T ss_pred EEEeCCCceEEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeeccccccCCCCceEEecCC
Confidence 44555666799999988644211 3445556667899999999999988766 5688888887
No 35
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.03 E-value=9.2e-06 Score=54.10 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 35 ALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
.+..+.+..++++++|||+|........+.+.+|||+.+..
T Consensus 155 ~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~ 195 (199)
T cd07383 155 LFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGY 195 (199)
T ss_pred HHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCC
Confidence 34455567899999999999976655566678999998754
No 36
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=97.94 E-value=2.8e-05 Score=47.64 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=32.7
Q ss_pred ECCEEEEEecCCCCCCCCC----------HHHHHHHHhhCCCCEEEEcCccCc
Q psy10860 14 VGQFRIGLCHGHDIIPWGD----------PEALALLQRQLDVDILISGHTHKF 56 (91)
Q Consensus 14 ~~g~~i~~~Hg~~~~~~~~----------~~~l~~~~~~~~~dvvi~GHtH~~ 56 (91)
-...+|+++|.++...... .+.+..+.+..+++++++||+|.+
T Consensus 148 ~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 148 NDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred cccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 3467899999988754322 235666778899999999999974
No 37
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.93 E-value=1.2e-05 Score=55.27 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCCEEEEcCccCccEEEECCEEEEccCCcCC
Q psy10860 44 DVDILISGHTHKFEAYEHENKFYINPGSATG 74 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~ 74 (91)
.+|++|+||+|.+.....++++++||||...
T Consensus 191 ~p~vii~Gh~h~~~~~~~~~~~~vn~Gsf~~ 221 (243)
T cd07386 191 VPDILHTGHVHVYGVGVYRGVLLVNSGTWQS 221 (243)
T ss_pred CCCEEEECCCCchHhEEECCEEEEECCCCcC
Confidence 4589999999999988889999999999753
No 38
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.80 E-value=7.8e-05 Score=51.81 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=38.9
Q ss_pred CCEEEEEecCCCCCC------------------CCCHHH---HHHHHhhCCCCEEEEcCccCccEEE----------ECC
Q psy10860 15 GQFRIGLCHGHDIIP------------------WGDPEA---LALLQRQLDVDILISGHTHKFEAYE----------HEN 63 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~------------------~~~~~~---l~~~~~~~~~dvvi~GHtH~~~~~~----------~~~ 63 (91)
+...|+++|+.+... +++++. +.+......+++++|||.|.+.... .++
T Consensus 146 ~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~~r~~~~~~~~g 225 (238)
T cd07397 146 DLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKGLRNMIAVDREG 225 (238)
T ss_pred CCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCcccccccccceeeecCCC
Confidence 456899999876421 233332 2222223458999999999983221 278
Q ss_pred EEEEccCCcCC
Q psy10860 64 KFYINPGSATG 74 (91)
Q Consensus 64 ~~~iNPGS~~~ 74 (91)
+.++|+.++-+
T Consensus 226 t~y~N~a~~pr 236 (238)
T cd07397 226 TVYLNAASVPR 236 (238)
T ss_pred eEEEecccccc
Confidence 99999998743
No 39
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.71 E-value=0.00012 Score=51.07 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=41.8
Q ss_pred CCEEEEEecCCCCCCC----CCHHHHHHHHhh-CCCCEEEEcCccCccEE-EECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIPW----GDPEALALLQRQ-LDVDILISGHTHKFEAY-EHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~----~~~~~l~~~~~~-~~~dvvi~GHtH~~~~~-~~~~~~~iNPGS~~~~ 75 (91)
.+.-|+++|....... .......+++++ .++|+|+.||+|..... ..++++++++|+-+.-
T Consensus 184 ~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~~~~~~~v~q~g~~g~~ 250 (277)
T cd07410 184 ADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPGPTVNGVPVVQPGNWGSH 250 (277)
T ss_pred CCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEEeCCCccccccCCcCCEEEEcCChhhCE
Confidence 3467899997553211 111223344544 68999999999998766 5689999999986653
No 40
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=97.56 E-value=0.00026 Score=49.33 Aligned_cols=61 Identities=23% Similarity=0.204 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCCC----------CCHHHHHHHHhhCCCCEEEEcCccCccEEE----------------ECCEEEEccC
Q psy10860 17 FRIGLCHGHDIIPW----------GDPEALALLQRQLDVDILISGHTHKFEAYE----------------HENKFYINPG 70 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~----------~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~----------------~~~~~~iNPG 70 (91)
+.|++.|..++... ...+.+..++++.++|++++||+|...... .+++.+|-.|
T Consensus 156 ~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G 235 (294)
T cd00839 156 WIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIG 235 (294)
T ss_pred eEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEEC
Confidence 46777775554321 112345566777899999999999854322 1578889888
Q ss_pred CcCCCCC
Q psy10860 71 SATGAFN 77 (91)
Q Consensus 71 S~~~~~~ 77 (91)
+.|.+..
T Consensus 236 ~~G~~~~ 242 (294)
T cd00839 236 AGGNDEG 242 (294)
T ss_pred CCccccC
Confidence 8887754
No 41
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.56 E-value=0.00017 Score=48.87 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=41.4
Q ss_pred CCCCceEEEEECCEEEEEecCCCCCCCC--------CH----HHHHHHHhhCCCCEEEEcCccCccEE--EECCEEE-Ec
Q psy10860 4 TSYPEKKVVTVGQFRIGLCHGHDIIPWG--------DP----EALALLQRQLDVDILISGHTHKFEAY--EHENKFY-IN 68 (91)
Q Consensus 4 ~~lP~~~~~~~~g~~i~~~Hg~~~~~~~--------~~----~~l~~~~~~~~~dvvi~GHtH~~~~~--~~~~~~~-iN 68 (91)
.++|....+ + +++++||.+...|. .. ..+.+.++..+.+++|+||||.+... ..+++++ |-
T Consensus 119 ~~lP~~~~~--~--~~~fvHag~~~~w~r~y~~~~~~~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID 194 (208)
T cd07425 119 RSKPVIVKV--N--DTLFVHGGLGPLWYRGYSKETSDKECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRID 194 (208)
T ss_pred HhCCeEEEE--C--CEEEEeCCcHHHHhhHhhhhhhhccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEe
Confidence 356755543 4 47889998732220 00 13556777889999999999998754 4566655 55
Q ss_pred cCCc
Q psy10860 69 PGSA 72 (91)
Q Consensus 69 PGS~ 72 (91)
.|..
T Consensus 195 ~g~~ 198 (208)
T cd07425 195 VGMS 198 (208)
T ss_pred CCcc
Confidence 5543
No 42
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.45 E-value=0.00042 Score=48.93 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=40.0
Q ss_pred CEEEEEecCCCCCCCCC------HHHHHHHHhh--CCCCEEEEcCccCccEE---EECCEEEEccCCcCCC
Q psy10860 16 QFRIGLCHGHDIIPWGD------PEALALLQRQ--LDVDILISGHTHKFEAY---EHENKFYINPGSATGA 75 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~~~------~~~l~~~~~~--~~~dvvi~GHtH~~~~~---~~~~~~~iNPGS~~~~ 75 (91)
+.-|+++|......... ..+..+++++ .++|+|+.||+|..... ..++++++.||+-+.-
T Consensus 193 D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g~~g~~ 263 (288)
T cd07412 193 DAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNCTVPAGNPRLVTQAGSYGKA 263 (288)
T ss_pred CEEEEEeCCCCCCCCCCccccccChhHHHHHhhcCCCCCEEEeCccCccccccccCcCCEEEEecChhhce
Confidence 45688999765321110 0112223333 58999999999998765 5689999999987764
No 43
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.39 E-value=0.00051 Score=48.50 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=39.3
Q ss_pred CCEEEEEecCCCCCCC------CCHHHHHHHHhhCCCCEEEEcCccCccE-------------------EEECCEEEEcc
Q psy10860 15 GQFRIGLCHGHDIIPW------GDPEALALLQRQLDVDILISGHTHKFEA-------------------YEHENKFYINP 69 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~------~~~~~l~~~~~~~~~dvvi~GHtH~~~~-------------------~~~~~~~~iNP 69 (91)
.+.-|++.|....... .....+.+.+...++|+||.||+|.... ...++++++.+
T Consensus 174 ~D~VI~lsH~G~~~~~~~~~~~~~~~~lA~~~~~~giD~IigGHsH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~q~ 253 (285)
T cd07405 174 PDIVIAATHMGHYDNGEHGSNAPGDVEMARALPAGGLDLIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDVQNGVWIVQA 253 (285)
T ss_pred CCEEEEEecccccCCccccccCchHHHHHHhcCCCCCCEEEeCCCCccccCccccccccccccCccccCcccCCEEEEeC
Confidence 3466889996653211 1112333332235899999999999763 23578999999
Q ss_pred CCcCCC
Q psy10860 70 GSATGA 75 (91)
Q Consensus 70 GS~~~~ 75 (91)
|+-|.-
T Consensus 254 g~~g~~ 259 (285)
T cd07405 254 HEWGKY 259 (285)
T ss_pred ChHHce
Confidence 987654
No 44
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=97.36 E-value=8.8e-05 Score=45.62 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=46.9
Q ss_pred EEEEecCCCCCCC--CCHHHHHHHHhhCCCCEEEEcCccCccEEEEC--CEEEEccCCcCCCCCCCCCCCceEEEee
Q psy10860 18 RIGLCHGHDIIPW--GDPEALALLQRQLDVDILISGHTHKFEAYEHE--NKFYINPGSATGAFNPLEPLNGRYANVK 90 (91)
Q Consensus 18 ~i~~~Hg~~~~~~--~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~--~~~~iNPGS~~~~~~~~~~~~a~Y~il~ 90 (91)
+..++|+++..+. .....+....+....+++.+||+|.+...... ...++|||+.|.|++. .++.++|++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~ 120 (155)
T COG0639 45 GKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVH 120 (155)
T ss_pred CceeeecCCCCcchhhhHHHHHHHhhhhcccCCCccccccccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhc
Confidence 3566676665553 23333333333334489999999998433233 2799999999999886 34578887654
No 45
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.34 E-value=0.00065 Score=47.17 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=38.4
Q ss_pred CEEEEEecCCCCCCC----CCHHHHHHHHhhCCCCEEEEcCccCccE-EEE--C---CEEEEccCCc
Q psy10860 16 QFRIGLCHGHDIIPW----GDPEALALLQRQLDVDILISGHTHKFEA-YEH--E---NKFYINPGSA 72 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~----~~~~~l~~~~~~~~~dvvi~GHtH~~~~-~~~--~---~~~~iNPGS~ 72 (91)
..+|+++|.+..... .....+.+++++.++++++|||+|.... ... + ..++.||.+-
T Consensus 166 ~~~IV~~HhP~~~~~~~~~~~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~h~~~~~~~~~~~p~~~ 232 (256)
T cd07401 166 NYTIWFGHYPTSTIISPSAKSSSKFKDLLKKYNVTAYLCGHLHPLGGLEPVHYAGHPYALITNPKPS 232 (256)
T ss_pred CeEEEEEcccchhccCCCcchhHHHHHHHHhcCCcEEEeCCccCCCcceeeeecCCceEEEeCCCCh
Confidence 467999997663211 1122366677788999999999999876 222 3 3466788874
No 46
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=97.31 E-value=0.0024 Score=47.37 Aligned_cols=62 Identities=26% Similarity=0.234 Sum_probs=47.1
Q ss_pred CCEEEEEecCCCCCCC---CCHH---HHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCC
Q psy10860 15 GQFRIGLCHGHDIIPW---GDPE---ALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAF 76 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~---~~~~---~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~ 76 (91)
..++|++-|.+.++.. .+.+ .|.-++++.++|+.++||-|-....+.+++.+|..|+-|..+
T Consensus 213 a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~gt~yIvSGaGs~~~ 280 (394)
T PTZ00422 213 ADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVLTDEGTAHINCGSGGNSG 280 (394)
T ss_pred CCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEecCCCceEEEeCcccccc
Confidence 4588999998776531 2222 455677889999999999999776667889999999976543
No 47
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.30 E-value=0.00064 Score=44.90 Aligned_cols=62 Identities=18% Similarity=0.033 Sum_probs=39.9
Q ss_pred ceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCC
Q psy10860 8 EKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 71 (91)
Q Consensus 8 ~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS 71 (91)
...+++.+|++|+++|-....+....+..+..-....++++|+||.|-++...-.+. ||.|.
T Consensus 100 ~f~~ie~dg~~~~LsHyP~~~~~~~~~~~r~~y~~~~~~llIHGH~H~~~~kp~p~q--idvgV 161 (186)
T COG4186 100 AFQRIEWDGEDVYLSHYPRPGQDHPGMESRFDYLRLRVPLLIHGHLHSQFPKPGPGQ--IDVGV 161 (186)
T ss_pred HHHheeECCeEEEEEeCCCCCCCCcchhhhHHHHhccCCeEEeccccccccCCCCce--EEeee
Confidence 345788999999999976544332222333223346789999999999765433333 66654
No 48
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.20 E-value=0.0014 Score=45.49 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=38.9
Q ss_pred CEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 16 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
+.-|+++|.... ....+.+. -.++|+|+.||+|.......++++++-+|+-+.-
T Consensus 173 D~iVvl~H~g~~----~d~~la~~--~~~iD~IlgGH~H~~~~~~~~~t~vv~~g~~g~~ 226 (257)
T cd07406 173 DLIIALTHMRLP----NDKRLARE--VPEIDLILGGHDHEYILVQVGGTPIVKSGSDFRT 226 (257)
T ss_pred CEEEEEeccCch----hhHHHHHh--CCCCceEEecccceeEeeeECCEEEEeCCcCcce
Confidence 456888887531 11222222 2589999999999988778899999999986643
No 49
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.20 E-value=0.0008 Score=46.03 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEE--EECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAY--EHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~--~~~~~~~iNPGS~~~~ 75 (91)
.+.-|+++|..... ..++.+. ..++|+++.||+|..... ..++++++-+|+-+.-
T Consensus 171 ~D~vIvl~H~g~~~----~~~la~~--~~giDlvlggH~H~~~~~~~~~~~~~v~~~g~~~~~ 227 (252)
T cd00845 171 ADVIILLSHLGLDD----DEELAEE--VPGIDVILGGHTHHLLEEPEVVNGTLIVQAGKYGKY 227 (252)
T ss_pred CCEEEEEeccCccc----hHHHHhc--CCCccEEEcCCcCcccCCCcccCCEEEEeCChhHce
Confidence 34678999976521 1222221 268999999999997543 5689999999986543
No 50
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.13 E-value=0.0012 Score=45.68 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=39.0
Q ss_pred CCEEEEEecCCCCCCC--CCHHHHHHHHhhCCCCEEEEcCccCccEEE---ECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIPW--GDPEALALLQRQLDVDILISGHTHKFEAYE---HENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~--~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~---~~~~~~iNPGS~~~~ 75 (91)
.+.-|+++|....... ....++.+ +..++|+|+.||+|...... .++++++.+|+-+.-
T Consensus 172 ~D~iIvl~H~G~~~~~~~~~~~~la~--~~~giDvIigGH~H~~~~~~~~~~~~~~ivq~g~~g~~ 235 (257)
T cd07408 172 ADVIVALGHLGVDRTSSPWTSTELAA--NVTGIDLIIDGHSHTTIEIGKKDGNNVLLTQTGAYLAN 235 (257)
T ss_pred CCEEEEEeCcCcCCCCCCccHHHHHH--hCCCceEEEeCCCcccccCcccccCCeEEEcCChHHce
Confidence 3567899996543211 11123322 34689999999999976543 589999999985543
No 51
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.03 E-value=0.0021 Score=44.72 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=36.9
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccE---EEECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEA---YEHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~---~~~~~~~~iNPGS~~~~ 75 (91)
.+.-|+++|.... ....+.+ +..++|+++.||+|.... ...++++++.+|+-+..
T Consensus 184 ~D~iI~l~H~g~~----~~~~la~--~~~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g~~~~~ 241 (264)
T cd07411 184 VDVVVLLSHNGLP----VDVELAE--RVPGIDVILSGHTHERTPKPIIAGGGTLVVEAGSHGKF 241 (264)
T ss_pred CCEEEEEecCCch----hhHHHHh--cCCCCcEEEeCcccccccCcccccCCEEEEEcCccccE
Confidence 4567888886431 1122222 236799999999997654 33589999999986654
No 52
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=96.99 E-value=0.0037 Score=44.30 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=38.0
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhC-CCC-EEEEcCccCccEEE-ECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQL-DVD-ILISGHTHKFEAYE-HENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~-~~d-vvi~GHtH~~~~~~-~~~~~~iNPGS~~~~ 75 (91)
.+.-|+++|..........+...++++.. +.| ++|.||+|...... .++++++-||+-|.-
T Consensus 188 ~DvIIvlsH~G~~~d~~~~~~~~~la~~~~~id~~Ii~GHsH~~~~~~~~~~~~ivq~G~~g~~ 251 (282)
T cd07407 188 VDLILVLGHMPVRDDAEFKVLHDAIRKIFPDTPIQFLGGHSHVRDFTQYDSSSTGLESGRYLET 251 (282)
T ss_pred CCEEEEEeCCCCCCCccHHHHHHHHHHhCCCCCEEEEeCCcccccceeccCcEEEEeccchhhc
Confidence 34678999977542211111122344333 567 79999999754333 378999999987654
No 53
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=96.96 E-value=0.001 Score=45.02 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=35.8
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCcc
Q psy10860 17 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFE 57 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~ 57 (91)
.-|+|+|-.|.+...+...+.+..++..++.++|||.|.+.
T Consensus 160 ~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 160 KFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred eEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCCC
Confidence 45899999998887777788888889999999999999965
No 54
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.95 E-value=0.0058 Score=41.90 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=34.2
Q ss_pred CCEEEEEecCCCCCC---CCCHHHHHHHHhhCCCCEEEEcCccCcc-EEEECCEEEE
Q psy10860 15 GQFRIGLCHGHDIIP---WGDPEALALLQRQLDVDILISGHTHKFE-AYEHENKFYI 67 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~---~~~~~~l~~~~~~~~~dvvi~GHtH~~~-~~~~~~~~~i 67 (91)
.+.-|+++|...... ......+.+.+.+.++|+|+.||+|... .+..++++++
T Consensus 173 ~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e~~~~~~I~ 229 (239)
T smart00854 173 ADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQPIEIYKGKLIA 229 (239)
T ss_pred CCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCCceEEECCEEEE
Confidence 467899999665322 1122334444445789999999999974 4555777663
No 55
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.93 E-value=0.0026 Score=47.29 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=43.2
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEE----ECCEEEEccCCcCC-CCCCCCCCCceEEEe
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYE----HENKFYINPGSATG-AFNPLEPLNGRYANV 89 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~----~~~~~~iNPGS~~~-~~~~~~~~~a~Y~il 89 (91)
+.++|+++|+....-.........++ ....|+++.||.|.+.... .++..++.|||.-. .+.......-+|.++
T Consensus 200 ~~fnIlv~Hq~~~~~~~~~~ipe~ll-p~~fDYValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lV 278 (405)
T TIGR00583 200 DWFNLLVLHQNHAAHTSTSFLPESFI-PDFFDLVIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFIL 278 (405)
T ss_pred CceEEEEeCceecCCCCcccCchhhh-hccCcEEEecccccccccccccCCCCceEEECCCcccccccccccCCCEEEEE
Confidence 34689999987532111111112233 3468999999999975432 24678999999543 333211123456666
Q ss_pred e
Q psy10860 90 K 90 (91)
Q Consensus 90 ~ 90 (91)
+
T Consensus 279 e 279 (405)
T TIGR00583 279 N 279 (405)
T ss_pred E
Confidence 5
No 56
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.82 E-value=0.0065 Score=41.51 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=34.5
Q ss_pred CCEEEEEecCCCCC---CCCCHHHHHHHHhhCCCCEEEEcCccCcc-EEEECCEEEE
Q psy10860 15 GQFRIGLCHGHDII---PWGDPEALALLQRQLDVDILISGHTHKFE-AYEHENKFYI 67 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~---~~~~~~~l~~~~~~~~~dvvi~GHtH~~~-~~~~~~~~~i 67 (91)
.+.-|+++|..... |......+.+.+.+.++|+|+.||+|.+. .+..++++++
T Consensus 175 ~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~~~~~~I~ 231 (239)
T cd07381 175 ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQGIEIYKGKLIF 231 (239)
T ss_pred CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEEECCEEEE
Confidence 56789999965532 22222344444446799999999999975 4555666654
No 57
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.71 E-value=0.0042 Score=49.63 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=41.2
Q ss_pred CCEEEEEecCCCCCCCC--CHHHH-HHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIPWG--DPEAL-ALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~--~~~~l-~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
.+.-|+++|........ ..+.. ..+.+-.++|+||.||||..+....++++++-||+.|.-
T Consensus 245 aDvIIaLsH~G~~~d~~~~~~ena~~~l~~v~gID~IlgGHsH~~~~~~ingv~vvqaG~~G~~ 308 (780)
T PRK09418 245 ADVIVALAHSGVDKSGYNVGMENASYYLTEVPGVDAVLMGHSHTEVKDVFNGVPVVMPGVFGSN 308 (780)
T ss_pred CCEEEEEeccCcccccccccchhhhHHHhcCCCCCEEEECCCCCcccccCCCEEEEEcChhhcE
Confidence 34678999976532110 01111 112334589999999999988777889999999998764
No 58
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.70 E-value=0.0021 Score=41.99 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=23.6
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEEC
Q psy10860 17 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE 62 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~ 62 (91)
.+++++||+.... . .+.|++|+||+| |.....+
T Consensus 107 ~~~~~~HG~~~~~-----~-------~~~~~~i~GH~H-P~~~~~~ 139 (172)
T cd07391 107 GGFLFFHGHKPPP-----P-------LDAELVIIGHEH-PAIRLRD 139 (172)
T ss_pred CCEEEEeCCCCCC-----c-------CCCCEEEEccCC-CcEEEEc
Confidence 4789999986321 0 467999999999 6665443
No 59
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.69 E-value=0.011 Score=40.80 Aligned_cols=56 Identities=21% Similarity=0.115 Sum_probs=37.0
Q ss_pred CCEEEEEecCCCC-C--CCCCHHHHHHHHhhCCCCEEEEcCccCcc-EEEECCEEEE-ccC
Q psy10860 15 GQFRIGLCHGHDI-I--PWGDPEALALLQRQLDVDILISGHTHKFE-AYEHENKFYI-NPG 70 (91)
Q Consensus 15 ~g~~i~~~Hg~~~-~--~~~~~~~l~~~~~~~~~dvvi~GHtH~~~-~~~~~~~~~i-NPG 70 (91)
.+.-|+++|.... . |.....++...+.+.++|+|+.+|+|... ++..++++++ .-|
T Consensus 184 ~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~~~~I~YSLG 244 (250)
T PF09587_consen 184 ADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPHVIQPVEIYKGKPIFYSLG 244 (250)
T ss_pred CCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEECCEEEEEeCc
Confidence 5678999996542 2 22233445555557899999999999965 4556666553 444
No 60
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.58 E-value=0.0059 Score=50.51 Aligned_cols=60 Identities=20% Similarity=0.058 Sum_probs=40.4
Q ss_pred CEEEEEecCCCCCC-CCCHHHHHHHHhh-CCCCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 16 QFRIGLCHGHDIIP-WGDPEALALLQRQ-LDVDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 16 g~~i~~~Hg~~~~~-~~~~~~l~~~~~~-~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
+.-|+++|-..... ........+++++ .++|+||.||+|.......++++++.+|+-|.-
T Consensus 840 D~VV~LsH~G~~~d~~~~~~~~~~lA~~v~gIDvIigGHsH~~~~~~v~~~~ivqag~~g~~ 901 (1163)
T PRK09419 840 DAIIALTHLGSNQDRTTGEITGLELAKKVKGVDAIISAHTHTLVDKVVNGTPVVQAYKYGRA 901 (1163)
T ss_pred CEEEEEecCCccccccccccHHHHHHHhCCCCCEEEeCCCCccccccCCCEEEEeCChhHcE
Confidence 45688999654311 1111122334443 479999999999987777799999999997753
No 61
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=96.57 E-value=0.0088 Score=45.58 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=39.6
Q ss_pred CEEEEEecCCCCCC-------------CCCHHHHHHHHhhC-CCCEEEEcCccCccEEEE---------CCEEEEccCCc
Q psy10860 16 QFRIGLCHGHDIIP-------------WGDPEALALLQRQL-DVDILISGHTHKFEAYEH---------ENKFYINPGSA 72 (91)
Q Consensus 16 g~~i~~~Hg~~~~~-------------~~~~~~l~~~~~~~-~~dvvi~GHtH~~~~~~~---------~~~~~iNPGS~ 72 (91)
...|+++|..++.. ..+.+++.++++.. ++..+++||+|+..+... .+.+=||-+|+
T Consensus 338 k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSl 417 (496)
T TIGR03767 338 TLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASH 417 (496)
T ss_pred CCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEecccc
Confidence 45789999875421 11235666666665 788999999999875543 25666999995
No 62
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.54 E-value=0.012 Score=40.45 Aligned_cols=45 Identities=31% Similarity=0.642 Sum_probs=32.1
Q ss_pred CCCCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEE
Q psy10860 4 TSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYE 60 (91)
Q Consensus 4 ~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~ 60 (91)
..++....+.++++ .++||+.. + +.+ ..++|++|+||+|.+...+
T Consensus 106 ~~~~~~~~~~lg~~--~l~HGh~~-~--~~~-------~~~~d~~I~GH~HP~i~l~ 150 (225)
T TIGR00024 106 IGLSGEESIRIGKY--LIFHGHAV-P--DEE-------DLDAKVLIFGHEHPAVKLR 150 (225)
T ss_pred CCCCccceEEECCE--EEEeCCCC-C--Ccc-------cccCCEEEECCCCceEEEE
Confidence 45677777888885 99999873 2 111 2367999999999976543
No 63
>PLN02533 probable purple acid phosphatase
Probab=96.50 E-value=0.0081 Score=44.85 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=38.9
Q ss_pred EEEEEecCCCCCCC---C-------CHHHHHHHHhhCCCCEEEEcCccCccEEE--------ECCEEEEccCCcCCC
Q psy10860 17 FRIGLCHGHDIIPW---G-------DPEALALLQRQLDVDILISGHTHKFEAYE--------HENKFYINPGSATGA 75 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~---~-------~~~~l~~~~~~~~~dvvi~GHtH~~~~~~--------~~~~~~iNPGS~~~~ 75 (91)
+.|++.|..++... . ..+.+..++.+.++|++++||.|...... ..++++|-.|+.|..
T Consensus 285 wiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~ 361 (427)
T PLN02533 285 WVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNR 361 (427)
T ss_pred EEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccc
Confidence 45777787665321 0 12345567778899999999999743211 147788888887765
No 64
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.014 Score=44.35 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=27.8
Q ss_pred hCCCCEEEEcCccCccEEEECCEEEEccCCcCC
Q psy10860 42 QLDVDILISGHTHKFEAYEHENKFYINPGSATG 74 (91)
Q Consensus 42 ~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~ 74 (91)
+.-+|++++||+|........+..+||-|++-.
T Consensus 416 eevPDv~~~Ghvh~~g~~~y~gv~~vns~T~q~ 448 (481)
T COG1311 416 EEVPDVFHTGHVHKFGTGVYEGVNLVNSGTWQE 448 (481)
T ss_pred ccCCcEEEEccccccceeEEeccceEEeeeecc
Confidence 346899999999999888888888999988743
No 65
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.49 E-value=0.007 Score=47.22 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=38.3
Q ss_pred CEEEEEecCCCCCC--CCCHH-HHHHHHhhCCCCEEEEcCccCccEE--------------EECCEEEEccCCcCCC
Q psy10860 16 QFRIGLCHGHDIIP--WGDPE-ALALLQRQLDVDILISGHTHKFEAY--------------EHENKFYINPGSATGA 75 (91)
Q Consensus 16 g~~i~~~Hg~~~~~--~~~~~-~l~~~~~~~~~dvvi~GHtH~~~~~--------------~~~~~~~iNPGS~~~~ 75 (91)
+.-|+++|...... ....+ ....+.+-.++|+||.||||..+.. ..++++++.||+.|.-
T Consensus 197 DvII~LsH~G~~~d~~~~~~en~~~~l~~v~gID~Il~GHsH~~~~~~~~~~~~~~d~~~~~i~g~~vvqaG~~G~~ 273 (626)
T TIGR01390 197 DIIVALAHSGISADPYQPGAENSAYYLTKVPGIDAVLFGHSHAVFPGKDFATIPGADITNGTINGVPAVMAGYWGNH 273 (626)
T ss_pred CEEEEEeccCcCCCccccccchHHHHHhcCCCCCEEEcCCCCccCcCcccccCCcccccccccCCEEEEeCChhhcE
Confidence 45689999765321 11111 1122334468999999999997632 2468899999997654
No 66
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=96.46 E-value=0.0039 Score=41.63 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccE
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
+..+|+++|... .+... ...++|++++||||...+
T Consensus 134 ~~~~I~l~H~P~--------~~~~~-~~~~~dl~l~GHtHggqi 168 (223)
T cd07385 134 DDPNILLAHQPD--------TAEEA-AAWGVDLQLSGHTHGGQI 168 (223)
T ss_pred CCCEEEEecCCC--------hhHHh-cccCccEEEeccCCCCEE
Confidence 446788999632 12212 456899999999997544
No 67
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=96.42 E-value=0.0085 Score=45.87 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=36.7
Q ss_pred CEEEEEecCCCCCCC------CCHHHHHHHHhhCCCCEEEEcCccCccE-------------------EEECCEEEEccC
Q psy10860 16 QFRIGLCHGHDIIPW------GDPEALALLQRQLDVDILISGHTHKFEA-------------------YEHENKFYINPG 70 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~------~~~~~l~~~~~~~~~dvvi~GHtH~~~~-------------------~~~~~~~~iNPG 70 (91)
+.-|+++|....... .....+.+.....++|+||.||+|.... ...++++++.+|
T Consensus 211 D~IV~LsH~G~~~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivqag 290 (551)
T PRK09558 211 DVIIALTHMGHYDDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGTWIVQAH 290 (551)
T ss_pred CEEEEEeccccccCCccCCCCccHHHHHHhCCccCceEEEeCCCCcccccCCCcccccccCCCCCCCCcccCCEEEEecC
Confidence 456899996653211 1112222222223799999999998643 234788889888
Q ss_pred CcCCC
Q psy10860 71 SATGA 75 (91)
Q Consensus 71 S~~~~ 75 (91)
+-|..
T Consensus 291 ~~g~~ 295 (551)
T PRK09558 291 EWGKY 295 (551)
T ss_pred hhhhe
Confidence 76654
No 68
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.41 E-value=0.012 Score=48.72 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCEEEEEecCCCCCC---CCCHHHHHHHHh-hCCCCEEEEcCccCccE--------------EEECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIP---WGDPEALALLQR-QLDVDILISGHTHKFEA--------------YEHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~---~~~~~~l~~~~~-~~~~dvvi~GHtH~~~~--------------~~~~~~~~iNPGS~~~~ 75 (91)
.+.-|+++|...... ........++++ -.++|+||.||+|..+. ...++++++.||+-|.-
T Consensus 235 aDvII~l~H~G~~~~~~~~~~en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~~ 313 (1163)
T PRK09419 235 ADVIVALAHSGIESEYQSSGAEDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGKY 313 (1163)
T ss_pred CCEEEEEeccCcCCCCCCCCcchHHHHHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhcE
Confidence 346689999654321 122233344553 36899999999999754 24578999999987763
No 69
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=96.41 E-value=0.0072 Score=42.49 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=34.2
Q ss_pred CEEEEEecCCCCCCCCCHHHHHHHHhh-CCCCEEEEcCccCccEE---------------EE-----CCEEEEccCCcCC
Q psy10860 16 QFRIGLCHGHDIIPWGDPEALALLQRQ-LDVDILISGHTHKFEAY---------------EH-----ENKFYINPGSATG 74 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~~~~~~l~~~~~~-~~~dvvi~GHtH~~~~~---------------~~-----~~~~~iNPGS~~~ 74 (91)
+.-|+++|.... .. .+++++ .++|+||.||+|..... .. ++++++.+|+-|.
T Consensus 184 D~II~l~H~G~~----~d---~~la~~~~giD~IiggH~H~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ivq~g~~g~ 256 (281)
T cd07409 184 NKIIALSHSGYE----VD---KEIARKVPGVDVIVGGHSHTFLYTGPPPSGEKPVGPYPTVVKNADGRKVLVVQAYAYGK 256 (281)
T ss_pred CEEEEEeccCch----hH---HHHHHcCCCCcEEEeCCcCccccCCCCCcCcccCCCCCEEeeCCCCCEEEEEeCChHHh
Confidence 456888896531 11 223332 58999999999996521 11 3578899998665
Q ss_pred C
Q psy10860 75 A 75 (91)
Q Consensus 75 ~ 75 (91)
-
T Consensus 257 ~ 257 (281)
T cd07409 257 Y 257 (281)
T ss_pred e
Confidence 4
No 70
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=96.34 E-value=0.0045 Score=43.32 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccC
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~ 55 (91)
+..+|+++|-.. .+. ...+.++|++++||||-
T Consensus 182 ~~~~IlL~H~P~--------~~~-~~~~~~~dL~lsGHTHG 213 (271)
T PRK11340 182 NLPRLVLAHNPD--------SKE-VMRDEPWDLMLCGHTHG 213 (271)
T ss_pred CCCeEEEEcCCC--------hhH-hhccCCCCEEEeccccC
Confidence 556889999432 222 23456899999999995
No 71
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=96.30 E-value=0.015 Score=39.34 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=30.0
Q ss_pred EEEEEecCCCCCCC-------------CCHHHHHHHHhhC-CCCEEEEcCccCccEEEE
Q psy10860 17 FRIGLCHGHDIIPW-------------GDPEALALLQRQL-DVDILISGHTHKFEAYEH 61 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~-------------~~~~~l~~~~~~~-~~dvvi~GHtH~~~~~~~ 61 (91)
..|+++|..+.... ...+.+.+++++. +++.+++||.|.......
T Consensus 108 ~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 108 PAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred CEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 45888887765211 1123455666655 799999999999876654
No 72
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.22 E-value=0.013 Score=46.00 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCEEEEEecCCCCC-CC--CCHHHHHHHHhhCCCCEEEEcCccCccEE--------------EECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDII-PW--GDPEALALLQRQLDVDILISGHTHKFEAY--------------EHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~-~~--~~~~~l~~~~~~~~~dvvi~GHtH~~~~~--------------~~~~~~~iNPGS~~~~ 75 (91)
.+.-|+++|..... +. ........+.+-.++|+||.||+|..+.. ..+++.++.||+.|.-
T Consensus 219 aDvII~LsH~G~~~d~~~~~aen~~~~l~~v~gID~Il~GHsH~~~p~~~~~~~~~~d~~~g~i~g~pvv~aG~~G~~ 296 (649)
T PRK09420 219 ADIVVAIPHSGISADPYKAMAENSVYYLSEVPGIDAIMFGHSHAVFPGKDFADIPGADIAKGTLNGVPAVMPGRWGDH 296 (649)
T ss_pred CCEEEEEecCCcCCCCccccccchhHHHhcCCCCCEEEeCCCCccCcCcccccCCccccccccCCCEEEEeCChhhcE
Confidence 34678999976531 11 11111122344568999999999996521 1468899999997654
No 73
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.93 E-value=0.018 Score=46.40 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=38.0
Q ss_pred CEEEEEecCCCCCCC---CCHHHHHHHHhhCCCCEEEEcCccCccEE------------------EECCEEEEccCCcCC
Q psy10860 16 QFRIGLCHGHDIIPW---GDPEALALLQRQLDVDILISGHTHKFEAY------------------EHENKFYINPGSATG 74 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~---~~~~~l~~~~~~~~~dvvi~GHtH~~~~~------------------~~~~~~~iNPGS~~~ 74 (91)
+.-|++.|....... ........+++-.++|+||.||+|..+.. .+++++++-||+.|.
T Consensus 311 DvIIaLsH~G~~~d~~~~~~En~~~~LA~v~GIDaIvgGHsH~~~p~~~~~~~~~~~p~vd~~~g~ingvpvVqaG~~G~ 390 (814)
T PRK11907 311 DIVLVLSHSGIGDDQYEVGEENVGYQIASLSGVDAVVTGHSHAEFPSGNGTSFYAKYSGVDDINGKINGTPVTMAGKYGD 390 (814)
T ss_pred CEEEEEeCCCcccccccccccchhhHHhcCCCCCEEEECCCCCcccCccccccccccCcccccCCcCCCEEEEecChhhc
Confidence 456899997643111 00111122344568999999999997521 135789999998876
Q ss_pred C
Q psy10860 75 A 75 (91)
Q Consensus 75 ~ 75 (91)
-
T Consensus 391 ~ 391 (814)
T PRK11907 391 H 391 (814)
T ss_pred e
Confidence 4
No 74
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=95.90 E-value=0.047 Score=38.28 Aligned_cols=58 Identities=16% Similarity=-0.054 Sum_probs=34.2
Q ss_pred EEEEecCCCCCCC-----CCHHHHHHHHhhCC--CCEEEEcCccCccEEEEC--------CEEEEccCCcCCC
Q psy10860 18 RIGLCHGHDIIPW-----GDPEALALLQRQLD--VDILISGHTHKFEAYEHE--------NKFYINPGSATGA 75 (91)
Q Consensus 18 ~i~~~Hg~~~~~~-----~~~~~l~~~~~~~~--~dvvi~GHtH~~~~~~~~--------~~~~iNPGS~~~~ 75 (91)
-+++.|-.+.... ...+++.++.++.. +..+++||||........ ....+..+|++--
T Consensus 216 v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~~~~~~~~~~~~~~~~psitp~ 288 (296)
T cd00842 216 VWIIGHIPPGVNSYDTLENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVFYDDNDTGEPINVALIAPSVTPY 288 (296)
T ss_pred EEEEeccCCCCcccccchHHHHHHHHHHHHHHHhhheeeecccccceEEEEeCCCCCCCceEEEEecCccCcC
Confidence 4577776654321 12345666666654 567899999997665431 3344555566543
No 75
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=95.58 E-value=0.026 Score=40.50 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=33.5
Q ss_pred CEEEEEecCCCCCCCCCHHHHHHHHhh-CCCCEEEEcCccCccEEE------------------E----CCEEEEccCCc
Q psy10860 16 QFRIGLCHGHDIIPWGDPEALALLQRQ-LDVDILISGHTHKFEAYE------------------H----ENKFYINPGSA 72 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~~~~~~l~~~~~~-~~~dvvi~GHtH~~~~~~------------------~----~~~~~iNPGS~ 72 (91)
+.-|+++|.... ..... ++++ .++|+||.||||...... . ++++++++|+-
T Consensus 209 D~II~LsH~g~~---~~d~~---lA~~v~gIDvIigGHsH~~l~~~~~~~~~~~~~~~~yp~~~~~~~g~~~~ivq~g~~ 282 (313)
T cd08162 209 NKIILLSHLQQI---SIEQA---LAALLSGVDVIIAGGSNTLLADETDRLRPGDTAAGDYPLVTTDADGNPVLIVNTDGN 282 (313)
T ss_pred CEEEEEeccccc---chHHH---HHhcCCCCCEEEeCCCCccCcCCCccccCCCCcCCCCCEEEeCCCCCEEEEEEcChh
Confidence 456899997321 11222 3333 489999999999964211 0 34788999886
Q ss_pred CC
Q psy10860 73 TG 74 (91)
Q Consensus 73 ~~ 74 (91)
+.
T Consensus 283 ~~ 284 (313)
T cd08162 283 YK 284 (313)
T ss_pred hh
Confidence 64
No 76
>PHA03008 hypothetical protein; Provisional
Probab=95.50 E-value=0.077 Score=36.31 Aligned_cols=55 Identities=9% Similarity=-0.054 Sum_probs=38.7
Q ss_pred CEEEEEecCCCCCC---CCCHHHHHHHHhhCCCCEEEEcC---ccCccEEEECCEEEEccC
Q psy10860 16 QFRIGLCHGHDIIP---WGDPEALALLQRQLDVDILISGH---THKFEAYEHENKFYINPG 70 (91)
Q Consensus 16 g~~i~~~Hg~~~~~---~~~~~~l~~~~~~~~~dvvi~GH---tH~~~~~~~~~~~~iNPG 70 (91)
+..|++|||+|+.. +...+.|.+..++..+.+-|||| .-.|......+..++|.-
T Consensus 161 ~tDILITHgPP~GhLD~~vGC~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~~y~di~f~nsn 221 (234)
T PHA03008 161 KCDILITASPPFAILDDDLACGDLFSKVIKIKPKFHIFNGLTQFSHPNIFIYKDIIFINSN 221 (234)
T ss_pred CCCEEEeCCCCccccccccCcHHHHHHHHHhCCcEEEeCCccccCCCcEEEecceEEEecc
Confidence 36799999999753 22344555555577899999999 333555666788898864
No 77
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.05 E-value=0.12 Score=36.35 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCCEEEEcCccCccEEE--E-CCEEEEccCCcCCCC
Q psy10860 44 DVDILISGHTHKFEAYE--H-ENKFYINPGSATGAF 76 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~~--~-~~~~~iNPGS~~~~~ 76 (91)
++|+|+-||||.+.... . +++.++.-=-..+++
T Consensus 166 ~VdvIvGtHTHv~t~d~~il~~gTa~itd~Gm~G~~ 201 (255)
T cd07382 166 RVSAVVGTHTHVQTADERILPGGTAYITDVGMTGPY 201 (255)
T ss_pred CceEEEeCCCCccCCccEEeeCCeEEEecCccccCC
Confidence 58999999999986543 4 888666433333333
No 78
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=95.01 E-value=0.15 Score=34.74 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHHHHhhCC--CCEEEEcCccCc--cEEEECCEEEEc
Q psy10860 34 EALALLQRQLD--VDILISGHTHKF--EAYEHENKFYIN 68 (91)
Q Consensus 34 ~~l~~~~~~~~--~dvvi~GHtH~~--~~~~~~~~~~iN 68 (91)
..+...+...+ ++++++||.|++ ......+..+.+
T Consensus 169 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~ 207 (301)
T COG1409 169 GELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSD 207 (301)
T ss_pred hhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeee
Confidence 34444555556 999999999999 666666666664
No 79
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=94.65 E-value=0.075 Score=40.90 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=22.8
Q ss_pred CEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCcc
Q psy10860 16 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFE 57 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~ 57 (91)
+.-|+++|.... ....+.+ +-.++|+||.||+|...
T Consensus 184 D~II~lsH~g~~----~d~~la~--~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 184 NKIILLSHAGFE----KNCEIAQ--KINDIDVIVSGDSHYLL 219 (550)
T ss_pred CEEEEEecCCcH----HHHHHHh--cCCCCCEEEeCCCCccc
Confidence 456888996431 1112221 22489999999999964
No 80
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.053 Score=41.20 Aligned_cols=60 Identities=15% Similarity=0.042 Sum_probs=35.9
Q ss_pred CCEEEEEecCCCCCCCCCHHH---HHHHHhhCCCCEEEEcCccCccEE-----EECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEA---LALLQRQLDVDILISGHTHKFEAY-----EHENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~---l~~~~~~~~~dvvi~GHtH~~~~~-----~~~~~~~iNPGS~~~~ 75 (91)
-+.-|++.|............ ...... .+.|+++.||+|..+.. ..++++++.+|+.|.-
T Consensus 204 vD~iI~LsH~G~~~d~~~~~~~~~~~~~~~-~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~~gk~ 271 (517)
T COG0737 204 VDVIIALSHLGIEDDLELASEVPGDVDVAV-PGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGEYGKY 271 (517)
T ss_pred CCEEEEEeccCcCccccccccccccccccc-cCcceEeccCCcccccCCcccCccCCEEEEccChhhCc
Confidence 356789999765321100000 000010 23899999999964332 2478999999997764
No 81
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.95 E-value=0.062 Score=38.24 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=24.5
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEE
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAY 59 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~ 59 (91)
....|+++|.+. .+. .+++.++|++++||||-..+.
T Consensus 192 ~~~~IlL~H~P~--------~~~-~~~~~~~dLvLSGHTHGGQi~ 227 (284)
T COG1408 192 DLPGILLSHEPD--------IIL-QLRLYGVDLVLSGHTHGGQIR 227 (284)
T ss_pred cccceEeccCCc--------eeh-hhccCcceEEEeccccCCeEE
Confidence 335688888543 222 233458999999999987665
No 82
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=93.79 E-value=0.13 Score=33.66 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=24.6
Q ss_pred hhCCCCEEEEcCccCccEEEE----CCEEEEccCCcCCC
Q psy10860 41 RQLDVDILISGHTHKFEAYEH----ENKFYINPGSATGA 75 (91)
Q Consensus 41 ~~~~~dvvi~GHtH~~~~~~~----~~~~~iNPGS~~~~ 75 (91)
+..+++++++||+|-....+. +...-|...|+++.
T Consensus 131 ~~~~~~~~lsGH~H~~~~~~~~~~~~~~~ei~v~S~s~~ 169 (171)
T cd07384 131 DTIKPVLILSGHDHDQCEVVHSSKAGSVREITVKSFSWR 169 (171)
T ss_pred hccCceEEEeCcccCCeEEEecCCCCCceEEeeccchhh
Confidence 346889999999999855443 34566777776653
No 83
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=93.29 E-value=1.1 Score=31.54 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=41.9
Q ss_pred EEEEECCEEEEEecCCCCC------C-CCCHHHHHHHH-------------------------hhCCCCEEEEcCccCcc
Q psy10860 10 KVVTVGQFRIGLCHGHDII------P-WGDPEALALLQ-------------------------RQLDVDILISGHTHKFE 57 (91)
Q Consensus 10 ~~~~~~g~~i~~~Hg~~~~------~-~~~~~~l~~~~-------------------------~~~~~dvvi~GHtH~~~ 57 (91)
..++++|.+|+.+||.... + ....+.+++.+ -+.-++++++||.|...
T Consensus 137 ~~~~i~g~~vLgtsGqni~Di~ky~~~~~~l~~me~~L~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gnq~~f~ 216 (257)
T cd07387 137 YEFSIDGVRVLGTSGQNVDDILKYSSLESRLDILERTLKWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGNQPKFG 216 (257)
T ss_pred eEEEECCEEEEEECCCCHHHHHHhCCCCCHHHHHHHHHHhcccCCCCCCccccccCCCCCceeecCCCCEEEeCCCccee
Confidence 3578899999999996531 1 11122222211 12357899999999976
Q ss_pred EEEE-C----CEEEEccCCcCC
Q psy10860 58 AYEH-E----NKFYINPGSATG 74 (91)
Q Consensus 58 ~~~~-~----~~~~iNPGS~~~ 74 (91)
.... + .+++|+..+...
T Consensus 217 t~~~~~~~~~~v~lv~vP~Fs~ 238 (257)
T cd07387 217 TKLVEGEEGQRVLLVCVPSFSK 238 (257)
T ss_pred eeEEEcCCCCeEEEEEeCCcCc
Confidence 6554 2 378899887754
No 84
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=93.07 E-value=0.084 Score=35.72 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.1
Q ss_pred hCCCCEEEEcCccCccEEE
Q psy10860 42 QLDVDILISGHTHKFEAYE 60 (91)
Q Consensus 42 ~~~~dvvi~GHtH~~~~~~ 60 (91)
..++|++++||||--.+..
T Consensus 142 ~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 142 EGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred cCCCCEEEeCccCCCeEEE
Confidence 3578999999999966544
No 85
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=92.72 E-value=0.56 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCEEEEcCccCccEEEECCEEEEccCCcC
Q psy10860 44 DVDILISGHTHKFEAYEHENKFYINPGSAT 73 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~ 73 (91)
+.+.+|+|||=.......++.+.|..|++-
T Consensus 184 g~~~vV~GHtp~~~~~~~~~~i~IDtGa~~ 213 (245)
T PRK13625 184 GTAWIVYGHTPVKEPRFVNHTVNIDTGCVF 213 (245)
T ss_pred CCcEEEECCCCCccceecCCeEEEECcCcc
Confidence 456899999977655566778889999864
No 86
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=92.09 E-value=0.31 Score=33.01 Aligned_cols=48 Identities=29% Similarity=0.373 Sum_probs=32.0
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEc
Q psy10860 19 IGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYIN 68 (91)
Q Consensus 19 i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iN 68 (91)
|++.|-..... .. ..+.....+.+++++++||.|...........-+|
T Consensus 112 i~lsH~P~~~~-~~-~~~~~~~~~~~p~~Ifs~H~H~s~~~~~~~~~~~~ 159 (195)
T cd08166 112 IMLSHVPLLAE-GG-QALKHVVTDLDPDLIFSAHRHKSSIFMYDRLLRQN 159 (195)
T ss_pred eeeeccccccc-cc-HHHHHHHHhcCceEEEEcCccceeeEEeecccchh
Confidence 66777554321 11 24566677889999999999999877665443333
No 87
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=91.23 E-value=0.63 Score=32.53 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=19.3
Q ss_pred HHHHHHHhhCCCCEEEEcCccCccEE
Q psy10860 34 EALALLQRQLDVDILISGHTHKFEAY 59 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GHtH~~~~~ 59 (91)
+.-.++++..++.+|++||+|-.-..
T Consensus 206 ~~s~~il~~~~P~~vfsGhdH~~C~~ 231 (257)
T cd08163 206 SLSEVILKAVQPVIAFSGDDHDYCEV 231 (257)
T ss_pred HHHHHHHHhhCCcEEEecCCCcccee
Confidence 33445666779999999999996443
No 88
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=91.14 E-value=0.86 Score=29.34 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=23.7
Q ss_pred hCCCCEEEEcCccCcc-EEEECCEEEEccCCcCC
Q psy10860 42 QLDVDILISGHTHKFE-AYEHENKFYINPGSATG 74 (91)
Q Consensus 42 ~~~~dvvi~GHtH~~~-~~~~~~~~~iNPGS~~~ 74 (91)
..+++++++||+|-.. ....++++-+-.-|++.
T Consensus 120 ~~~~~~~l~GH~H~~~~~~~~~~~~e~~~~~~~~ 153 (156)
T cd08165 120 WLKPRLVLSGHTHSFCEVTHPDGTPEVTVPSFSW 153 (156)
T ss_pred hhCCCEEEEcccCCCceeEEECCEEEEEEeccee
Confidence 4567899999999954 44568887766655553
No 89
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=91.10 E-value=1.1 Score=31.67 Aligned_cols=32 Identities=22% Similarity=0.123 Sum_probs=23.0
Q ss_pred HHHHhhCCCCEEEEcCccCccEE-EE--CCEEEEc
Q psy10860 37 ALLQRQLDVDILISGHTHKFEAY-EH--ENKFYIN 68 (91)
Q Consensus 37 ~~~~~~~~~dvvi~GHtH~~~~~-~~--~~~~~iN 68 (91)
..+.-+.++|+|+.-|||.+-.. ++ +|+.++-
T Consensus 162 ~~~~ldg~vsaVvGtHtHV~TaD~~il~~gtayit 196 (266)
T TIGR00282 162 FGMAFDGYVTAVVGTHTHVPTADLRILPKGTAYIT 196 (266)
T ss_pred HHHHhCCCccEEEeCCCCCCCCcceeCCCCCEEEe
Confidence 33445779999999999998643 33 6777763
No 90
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=90.01 E-value=0.69 Score=32.55 Aligned_cols=45 Identities=22% Similarity=0.053 Sum_probs=32.9
Q ss_pred CEEEEEecCCCCCCC-----------------------CCHHHHHHHHhhCCCCEEEEcCccCccEEE
Q psy10860 16 QFRIGLCHGHDIIPW-----------------------GDPEALALLQRQLDVDILISGHTHKFEAYE 60 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~-----------------------~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~ 60 (91)
+..|+++|-.|.... .....+..+++..+++..++||.|..+...
T Consensus 165 ~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f~~~ 232 (262)
T cd00844 165 PIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFAAL 232 (262)
T ss_pred CCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCccccee
Confidence 568999998776431 122345677888999999999999966544
No 91
>PRK09982 universal stress protein UspD; Provisional
Probab=89.50 E-value=0.81 Score=28.57 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=24.1
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccC
Q psy10860 17 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~ 55 (91)
..+.+..|++ .+.+.+.+++.++|+||.|| |+
T Consensus 82 ~~~~v~~G~p------~~~I~~~A~~~~aDLIVmG~-~~ 113 (142)
T PRK09982 82 TKLRIERGEM------PETLLEIMQKEQCDLLVCGH-HH 113 (142)
T ss_pred ceEEEEecCH------HHHHHHHHHHcCCCEEEEeC-Ch
Confidence 3455566754 56777889999999999997 64
No 92
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=89.02 E-value=0.37 Score=35.20 Aligned_cols=62 Identities=19% Similarity=0.079 Sum_probs=38.6
Q ss_pred CCEEEEEecCCCC----CCCC--CHHHH-HHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCCC
Q psy10860 15 GQFRIGLCHGHDI----IPWG--DPEAL-ALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAF 76 (91)
Q Consensus 15 ~g~~i~~~Hg~~~----~~~~--~~~~l-~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~ 76 (91)
....|++.|.+.. .... ..... .........|.+..||.|.+.........+..|||+-.-.
T Consensus 165 ~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvALGHiH~~~~~~~~~~~i~y~GS~~~~~ 233 (390)
T COG0420 165 DDPSILVLHQSIDALTSGAERDLALGTVDLSLLPKGGFDYVALGHIHKRQVIPKEDPPIVYPGSPERYS 233 (390)
T ss_pred cCceeeehhhhhcccccCCccceEEcccccccccCCCcceEEcCCcccccccCCCCCceecCCCceecc
Confidence 4578999998632 1100 00011 1122233489999999999987766556678999986654
No 93
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=88.74 E-value=0.81 Score=29.62 Aligned_cols=52 Identities=15% Similarity=-0.018 Sum_probs=36.0
Q ss_pred CEEEEEecCCCCCCC-------------CCHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCC
Q psy10860 16 QFRIGLCHGHDIIPW-------------GDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 71 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~-------------~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS 71 (91)
+..|+++|-.|.... .....++++++..++++.+|||.|. +.++. .+.|+.+
T Consensus 69 ~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~-fyer~---Pf~~~~~ 133 (150)
T cd07380 69 GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGV-FYERE---PYRNDSV 133 (150)
T ss_pred CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCc-eEeec---CccCCCc
Confidence 468999998885431 1234677788889999999999998 43332 3455543
No 94
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=88.08 E-value=0.28 Score=36.47 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=31.1
Q ss_pred hCCCCEEEEcCccCccEEEEC--CEEEEccCCcCCCCCCCCCCCceEEEeeC
Q psy10860 42 QLDVDILISGHTHKFEAYEHE--NKFYINPGSATGAFNPLEPLNGRYANVKS 91 (91)
Q Consensus 42 ~~~~dvvi~GHtH~~~~~~~~--~~~~iNPGS~~~~~~~~~~~~a~Y~il~~ 91 (91)
+..+|+++.||.|.|+..-.. .-..|-.=|.+..++= .....+|+|+++
T Consensus 198 EIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNl-aGL~~a~~Ii~n 248 (388)
T COG1168 198 EIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNL-AGLKCAYIIISN 248 (388)
T ss_pred cccccccccCCCccchhhcChhhhcceEEEeeccccccc-hhhhheeEEecC
Confidence 347899999999999763221 1222333455555542 456889999875
No 95
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=87.74 E-value=1.1 Score=34.30 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=24.0
Q ss_pred HHHHHHhhC-CCCEEEEcCccCccEEEE---------CCEEEEccCCc
Q psy10860 35 ALALLQRQL-DVDILISGHTHKFEAYEH---------ENKFYINPGSA 72 (91)
Q Consensus 35 ~l~~~~~~~-~~dvvi~GHtH~~~~~~~---------~~~~~iNPGS~ 72 (91)
+|.++++.. ++-.+|+||.|+...... .+-|=||--|+
T Consensus 389 eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaSl 436 (492)
T TIGR03768 389 GLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETASL 436 (492)
T ss_pred HHHHHHhcCCCeEEEEcCCcccccccccCCCCCCCCcCceEEEeehhh
Confidence 455555443 677899999998765532 24455665554
No 96
>KOG2310|consensus
Probab=86.20 E-value=1.8 Score=33.91 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=34.5
Q ss_pred CCEEEEEecCCCCCCC----CCHHHHHHHHhhCCCCEEEEcCccCccEEE----ECCEEEEccCCc
Q psy10860 15 GQFRIGLCHGHDIIPW----GDPEALALLQRQLDVDILISGHTHKFEAYE----HENKFYINPGSA 72 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~----~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~----~~~~~~iNPGS~ 72 (91)
+-+.++++|-...... ....-+..+ .|+||.||-|...+.. ..+-.++-|||.
T Consensus 210 dWFNllvlHQNr~~h~~tn~lpE~flp~F-----~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSs 270 (646)
T KOG2310|consen 210 DWFNLLVLHQNRSKHRPTNFLPEQFLPDF-----LDLVIWGHEHECKIDPQYNAIQGFYILQPGSS 270 (646)
T ss_pred cceeeEEEeecccCCCCcccCcHhHhhhh-----hhheeeccccccccCcccccccceeeecCCCc
Confidence 4578999996542211 122223333 4899999999976543 357788999994
No 97
>KOG1378|consensus
Probab=85.40 E-value=1.9 Score=32.79 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=28.8
Q ss_pred EEEEEecCCCCCCCC-----------CHHHHHHHHhhCCCCEEEEcCccCcc
Q psy10860 17 FRIGLCHGHDIIPWG-----------DPEALALLQRQLDVDILISGHTHKFE 57 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~~-----------~~~~l~~~~~~~~~dvvi~GHtH~~~ 57 (91)
+-|++.|-..+.... ..+.|+.++-+.++|+++.||-|.-.
T Consensus 294 WlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YE 345 (452)
T KOG1378|consen 294 WLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYE 345 (452)
T ss_pred eEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehh
Confidence 457778865543211 22357778888999999999999954
No 98
>PRK15005 universal stress protein F; Provisional
Probab=81.43 E-value=4 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.419 Sum_probs=23.3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccC
Q psy10860 18 RIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 18 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~ 55 (91)
++.+.+|.+ .+.+.+.+++.++|+||.|. |.
T Consensus 87 ~~~v~~G~p------~~~I~~~a~~~~~DLIV~Gs-~~ 117 (144)
T PRK15005 87 HVHVEEGSP------KDRILELAKKIPADMIIIAS-HR 117 (144)
T ss_pred EEEEeCCCH------HHHHHHHHHHcCCCEEEEeC-CC
Confidence 556667764 45677788889999999994 44
No 99
>PHA02546 47 endonuclease subunit; Provisional
Probab=80.26 E-value=2.9 Score=30.29 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=26.6
Q ss_pred CCCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCCCCCceEEEee
Q psy10860 43 LDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLNGRYANVK 90 (91)
Q Consensus 43 ~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~~~~a~Y~il~ 90 (91)
.+.|.+..||.|.+.. . ..+.=|||.-.-..+.....-+|.+++
T Consensus 178 ~~fdyvALGHiH~~~~--~--~~i~Y~GSp~~~sf~E~~~~KG~~~vd 221 (340)
T PHA02546 178 KKYKQVWSGHFHTISE--K--GNVTYIGTPYTLTAGDENDPRGFWVFD 221 (340)
T ss_pred ccCCEEeecccccCcc--c--CCEEEeCCceeeCccccCCCCeEEEEE
Confidence 3578999999999742 2 237888996554333222234555544
No 100
>PRK15456 universal stress protein UspG; Provisional
Probab=79.43 E-value=6 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=24.4
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccC
Q psy10860 18 RIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 18 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~ 55 (91)
+..+..|++ .+.+.+.+++.++|+||.|....
T Consensus 85 ~~~v~~G~~------~~~I~~~a~~~~~DLIVmG~~g~ 116 (142)
T PRK15456 85 KQHVRFGSV------RDEVNELAEELGADVVVIGSRNP 116 (142)
T ss_pred EEEEcCCCh------HHHHHHHHhhcCCCEEEEcCCCC
Confidence 455666654 45677788899999999999764
No 101
>KOG2679|consensus
Probab=79.15 E-value=8.4 Score=27.99 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=39.6
Q ss_pred CCEEEEEecCCCCCC--CCCHH----HHHHHHhhCCCCEEEEcCccCccEEE--ECCEEEEccCCcCCC
Q psy10860 15 GQFRIGLCHGHDIIP--WGDPE----ALALLQRQLDVDILISGHTHKFEAYE--HENKFYINPGSATGA 75 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~--~~~~~----~l~~~~~~~~~dvvi~GHtH~~~~~~--~~~~~~iNPGS~~~~ 75 (91)
+.++|++=|....+. .+... +|.-++++.++|+.++||-|-..... ..++-++-.|.-+..
T Consensus 208 a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSka 276 (336)
T KOG2679|consen 208 AKWKIVVGHHPIKSAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKA 276 (336)
T ss_pred cceEEEecccceehhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccc
Confidence 456788877654322 23333 34446778999999999999865433 356777776665554
No 102
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=77.88 E-value=11 Score=28.12 Aligned_cols=51 Identities=20% Similarity=0.092 Sum_probs=33.9
Q ss_pred EEEEEecC-CCCCCC--CCHHHHHHHHhhCCCCEEEEcCccCcc-EEEE-CCEEEE
Q psy10860 17 FRIGLCHG-HDIIPW--GDPEALALLQRQLDVDILISGHTHKFE-AYEH-ENKFYI 67 (91)
Q Consensus 17 ~~i~~~Hg-~~~~~~--~~~~~l~~~~~~~~~dvvi~GHtH~~~-~~~~-~~~~~i 67 (91)
..|.+.|- ..+... .....+...+.+.++|+|+-+|.|.+. ++.. +++.++
T Consensus 226 lviv~~HwG~ey~~~p~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~~~~~I~ 281 (372)
T COG2843 226 LVIVQPHWGVEYAYEPAAGQRALARRLIDAGADIIVGHHPHVLQPIEIYIQGKPIL 281 (372)
T ss_pred EEEEeccccccccCCCcHHHHHHHHHHHhcCcCeEecCCCCcCcceEEecCCcEEE
Confidence 45666664 555432 224455555667899999999999974 5666 566664
No 103
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=77.71 E-value=0.73 Score=32.78 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=24.9
Q ss_pred HhhCCCCEEEEcCccCccEEEE------CCEEEEccCC
Q psy10860 40 QRQLDVDILISGHTHKFEAYEH------ENKFYINPGS 71 (91)
Q Consensus 40 ~~~~~~dvvi~GHtH~~~~~~~------~~~~~iNPGS 71 (91)
+...++|.+|.|.||.|+.... +.+.+|.+|.
T Consensus 173 ~~~~~~DtlVLGCTHyPll~~~i~~~~~~~v~lids~~ 210 (269)
T COG0796 173 LQEAGPDTLVLGCTHYPLLKPEIQQVLGEHVALIDSGA 210 (269)
T ss_pred hhccCCCEEEEeCcCcHHHHHHHHHHhCCCceEeCCHH
Confidence 3455799999999999987532 4688898883
No 104
>KOG3947|consensus
Probab=77.40 E-value=4.4 Score=29.24 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=39.3
Q ss_pred ECCEEEEEecCCCCCC-C----------CCHHHHHHHHhhCCCCEEEEcCccCccEEE-ECCEEEEccCCcC
Q psy10860 14 VGQFRIGLCHGHDIIP-W----------GDPEALALLQRQLDVDILISGHTHKFEAYE-HENKFYINPGSAT 73 (91)
Q Consensus 14 ~~g~~i~~~Hg~~~~~-~----------~~~~~l~~~~~~~~~dvvi~GHtH~~~~~~-~~~~~~iNPGS~~ 73 (91)
-++..++++|..+... + .=.+.+....+..+...-++||.|.-+-.. .+.+.++|.--+.
T Consensus 211 p~~iDvL~tHtPPlG~gd~~~~~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvta~G~t~fina~~C~ 282 (305)
T KOG3947|consen 211 PGGIDVLITHTPPLGHGDLVPVFSGQRNGCVELLNTVERRVQPKYHVFGHVHEGHGVTADGYTTFINAELCN 282 (305)
T ss_pred ccccceeccCCCCCCcchhcccccCcccCHHHHHHhHhhccccceEEeeeeecCceeeecCccccccHHHhh
Confidence 4667899999876531 0 112344555556788999999999976444 4566777765433
No 105
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=76.76 E-value=6.4 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=24.5
Q ss_pred HHHhhCCCCEEEEcCccCccEE---EECCEEEEccCCc
Q psy10860 38 LLQRQLDVDILISGHTHKFEAY---EHENKFYINPGSA 72 (91)
Q Consensus 38 ~~~~~~~~dvvi~GHtH~~~~~---~~~~~~~iNPGS~ 72 (91)
.+.+..+.+.+|+|||-..... ..++.+-|=-|++
T Consensus 174 ~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~ 211 (225)
T cd00144 174 WFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCN 211 (225)
T ss_pred HHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCc
Confidence 3444567889999999987655 3355666777764
No 106
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=73.53 E-value=1.5 Score=30.48 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=22.7
Q ss_pred hCCCCEEEEcCccCccEEEE------CCEEEEccCC
Q psy10860 42 QLDVDILISGHTHKFEAYEH------ENKFYINPGS 71 (91)
Q Consensus 42 ~~~~dvvi~GHtH~~~~~~~------~~~~~iNPGS 71 (91)
+.++|.+|.|.||.|..... ....+|.|+.
T Consensus 170 ~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~ 205 (251)
T TIGR00067 170 DTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGV 205 (251)
T ss_pred cCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHH
Confidence 45899999999999986422 2456888865
No 107
>KOG3818|consensus
Probab=73.03 E-value=3.6 Score=31.57 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=26.8
Q ss_pred CCCEEEEcCccCccEE-EECCEEEEccCCcCCC
Q psy10860 44 DVDILISGHTHKFEAY-EHENKFYINPGSATGA 75 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~-~~~~~~~iNPGS~~~~ 75 (91)
=+|+++.+-+-.++.. ...|..++||||....
T Consensus 472 lPdlmvl~Ds~~sf~~vt~~gC~v~NPGSF~~s 504 (525)
T KOG3818|consen 472 LPDLMVLADSFSSFFDVTYAGCIVINPGSFSRS 504 (525)
T ss_pred CcceEEeecccccccccccCCceeeCCCccccc
Confidence 4688999999888776 5589999999998874
No 108
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=71.29 E-value=6.3 Score=22.17 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCCCEEEEcCccCccEE
Q psy10860 33 PEALALLQRQLDVDILISGHTHKFEAY 59 (91)
Q Consensus 33 ~~~l~~~~~~~~~dvvi~GHtH~~~~~ 59 (91)
.+.+.+.+++.++|.++.||+-.-..+
T Consensus 37 ~~~~~~~a~~~~~~~Iv~G~~~~d~~~ 63 (86)
T cd01984 37 VRILKRLAAEEGADVIILGHNADDVAG 63 (86)
T ss_pred HHHHHHHHHHcCCCEEEEcCCchhhhh
Confidence 345667788899999999998665433
No 109
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=69.11 E-value=13 Score=22.75 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=22.8
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCcc
Q psy10860 19 IGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTH 54 (91)
Q Consensus 19 i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH 54 (91)
..+..|.+ .+.+.+.+++.++|+||.|..+
T Consensus 84 ~~~~~G~p------~~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 84 TLSGSGDL------GQVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred EEEEecCH------HHHHHHHHHHhCCCEEEEeCcc
Confidence 45556765 4567778889999999999864
No 110
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.37 E-value=2.4 Score=29.39 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=23.4
Q ss_pred CCCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 44 DVDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
+.|.+..||.|++... .+...+.=|||.-..
T Consensus 213 ~~dYvALGHiH~~q~~-~~~~~i~YsGSp~~~ 243 (253)
T TIGR00619 213 EADYVALGHHHIHKIS-KGRERVRYSGSPFPL 243 (253)
T ss_pred ccchhhcccccccccc-CCCCCEEECCCCccC
Confidence 5799999999997543 355678899997554
No 111
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=67.87 E-value=22 Score=25.85 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=18.4
Q ss_pred CCEEEEcCccCccEEEECCEEEEccCCc
Q psy10860 45 VDILISGHTHKFEAYEHENKFYINPGSA 72 (91)
Q Consensus 45 ~dvvi~GHtH~~~~~~~~~~~~iNPGS~ 72 (91)
.-+||+||| ......++++.|--|.-
T Consensus 255 ~~~VVhGHt--~~~~~~~~Ri~iDtGa~ 280 (304)
T cd07421 255 KTIVVSGHH--GKLHIDGLRLIIDEGGG 280 (304)
T ss_pred CeEEEECCC--CCceecCCEEEEECCCC
Confidence 348999999 34444577888877753
No 112
>PLN00416 carbonate dehydratase
Probab=65.92 E-value=8.2 Score=27.29 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=11.1
Q ss_pred CCC-CEEEEcCccCcc
Q psy10860 43 LDV-DILISGHTHKFE 57 (91)
Q Consensus 43 ~~~-dvvi~GHtH~~~ 57 (91)
.++ .|||+|||+--.
T Consensus 137 L~V~~IVV~GHs~CGa 152 (258)
T PLN00416 137 LKVENILVIGHSCCGG 152 (258)
T ss_pred hCCCEEEEecCCCchH
Confidence 344 699999998743
No 113
>PRK10116 universal stress protein UspC; Provisional
Probab=62.92 E-value=20 Score=21.69 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=24.8
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCcc
Q psy10860 18 RIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFE 57 (91)
Q Consensus 18 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~ 57 (91)
.+.+..|++ .+.+.+.+++.++|++|.|+.....
T Consensus 82 ~~~~~~G~~------~~~I~~~a~~~~~DLiV~g~~~~~~ 115 (142)
T PRK10116 82 KTFIAYGEL------SEHILEVCRKHHFDLVICGNHNHSF 115 (142)
T ss_pred EEEEecCCH------HHHHHHHHHHhCCCEEEEcCCcchH
Confidence 345566654 4567778888999999999876643
No 114
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=60.92 E-value=9 Score=24.93 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=34.1
Q ss_pred EEEEEecCCCCCC----------CCCHH----HHHHHHhhCCCCEEEEcCccCccE-------EEECCEEEEccCCcC
Q psy10860 17 FRIGLCHGHDIIP----------WGDPE----ALALLQRQLDVDILISGHTHKFEA-------YEHENKFYINPGSAT 73 (91)
Q Consensus 17 ~~i~~~Hg~~~~~----------~~~~~----~l~~~~~~~~~dvvi~GHtH~~~~-------~~~~~~~~iNPGS~~ 73 (91)
.+|++.||+-.+- ..+.+ .+++.+++.+.++-++=--|.-.. ...-+-++||||+.+
T Consensus 2 ~~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 79 (146)
T PRK13015 2 GKILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYT 79 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHh
Confidence 3689999976421 12333 345566667788877765554321 111245899999876
No 115
>PRK11175 universal stress protein UspE; Provisional
Probab=60.68 E-value=14 Score=25.64 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=24.7
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccE
Q psy10860 19 IGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 19 i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
+.+.+|.+ .+.+.+.+++.++|+|+.|+..+...
T Consensus 242 ~~v~~G~~------~~~I~~~a~~~~~DLIVmG~~~~~~~ 275 (305)
T PRK11175 242 THVEEGLP------EEVIPDLAEHLDAELVILGTVGRTGL 275 (305)
T ss_pred eeeccCCH------HHHHHHHHHHhCCCEEEECCCccCCC
Confidence 44555643 45677788889999999999877543
No 116
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=59.96 E-value=16 Score=27.25 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=27.8
Q ss_pred CCCEEEEcCccCccEEEECCEEEEccCCcCCCCCCCCCCCceEEEee
Q psy10860 44 DVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLNGRYANVK 90 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~~~~~~~~a~Y~il~ 90 (91)
+.|.+.-||.|+|.... +...+.=+||.-.-..+.....-++.+++
T Consensus 220 ~~dYvALGHlH~~Q~v~-~~~~vrYsGSpl~~sFsE~~~~K~v~lVe 265 (407)
T PRK10966 220 PADYIALGHIHRAQKVG-GTEHIRYSGSPIPLSFDELGKSKSVHLVE 265 (407)
T ss_pred ccCeeeccccccCcCCC-CCCcEEEcCCCCCCCccccCCCCeEEEEE
Confidence 47999999999986542 33457788996544332222223444443
No 117
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=58.75 E-value=16 Score=21.59 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCCCCEEEEcCccCccE
Q psy10860 33 PEALALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 33 ~~~l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
.+.+.+.+++.++|+||.|+......
T Consensus 83 ~~~I~~~a~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 83 ASGILRTAKERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCc
Confidence 35677788889999999999987653
No 118
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=58.20 E-value=18 Score=21.38 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCCCCEEEEcCccCccE
Q psy10860 33 PEALALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 33 ~~~l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
.+.+.+.+++.++|+++.|+.+....
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~~~~ 99 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRRSRW 99 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCchH
Confidence 45677788889999999999887543
No 119
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=58.02 E-value=6.7 Score=25.34 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=32.6
Q ss_pred EEEEEecCCCCCC----------CCCH----HHHHHHHhhCCCCEEEEcCccCccEE-------EECCEEEEccCCcCC
Q psy10860 17 FRIGLCHGHDIIP----------WGDP----EALALLQRQLDVDILISGHTHKFEAY-------EHENKFYINPGSATG 74 (91)
Q Consensus 17 ~~i~~~Hg~~~~~----------~~~~----~~l~~~~~~~~~dvvi~GHtH~~~~~-------~~~~~~~iNPGS~~~ 74 (91)
.||++.||.-..- ..+. +.+++.+++.+.++-++=--|.-... ..-.-++||||+.+.
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~th 79 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTH 79 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGH
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhcc
Confidence 3799999976431 1122 24455666777777776555543221 113678999998753
No 120
>PRK03011 butyrate kinase; Provisional
Probab=56.81 E-value=6.5 Score=28.92 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=9.3
Q ss_pred EEEEccCCcCC
Q psy10860 64 KFYINPGSATG 74 (91)
Q Consensus 64 ~~~iNPGS~~~ 74 (91)
.++|||||.+.
T Consensus 4 il~inpgstst 14 (358)
T PRK03011 4 ILVINPGSTST 14 (358)
T ss_pred EEEEcCCCchh
Confidence 68999999765
No 121
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=56.62 E-value=15 Score=23.59 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCCEEEEcCccC
Q psy10860 34 EALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GHtH~ 55 (91)
+.+.+.+++.++++|++|||-.
T Consensus 73 ~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 73 PALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHHHhcCCCEEEECCCcc
Confidence 3455666777899999999975
No 122
>PRK10200 putative racemase; Provisional
Probab=56.48 E-value=11 Score=25.75 Aligned_cols=20 Identities=15% Similarity=-0.090 Sum_probs=16.7
Q ss_pred hhCCCCEEEEcCccCccEEE
Q psy10860 41 RQLDVDILISGHTHKFEAYE 60 (91)
Q Consensus 41 ~~~~~dvvi~GHtH~~~~~~ 60 (91)
.+.++|.+|.|.||.|....
T Consensus 186 ~~~g~d~vILGCTelpll~~ 205 (230)
T PRK10200 186 AEQGAQGVIFGCTEIGLLVP 205 (230)
T ss_pred HHCCCCEEEECCcCHHHhCC
Confidence 34689999999999998753
No 123
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=56.23 E-value=18 Score=25.53 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=24.2
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEc
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISG 51 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~G 51 (91)
.+.+|..+|...+.+... +.+.+...+.++|+++.|
T Consensus 133 p~l~ivg~h~GYf~~~e~-~~i~~~I~~s~pdil~Vg 168 (253)
T COG1922 133 PGLKIVGSHDGYFDPEEE-EAIVERIAASGPDILLVG 168 (253)
T ss_pred CCceEEEecCCCCChhhH-HHHHHHHHhcCCCEEEEe
Confidence 345788888554444333 456666678899999988
No 124
>PLN02154 carbonic anhydrase
Probab=55.23 E-value=17 Score=26.27 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=10.9
Q ss_pred hCCC-CEEEEcCccCc
Q psy10860 42 QLDV-DILISGHTHKF 56 (91)
Q Consensus 42 ~~~~-dvvi~GHtH~~ 56 (91)
..++ .|+|+|||+--
T Consensus 162 ~L~v~~IvV~GHs~CG 177 (290)
T PLN02154 162 TLQVENIIVMGHSNCG 177 (290)
T ss_pred HhCCCEEEEecCCCch
Confidence 3344 68999999763
No 125
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=54.63 E-value=19 Score=21.10 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=17.5
Q ss_pred HHHHHhhCCCCEEEEcCccCccE
Q psy10860 36 LALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
+.+.+++.+++.++.||+.-...
T Consensus 53 ~~~~a~~~g~~~i~~g~~~~D~~ 75 (103)
T cd01986 53 AKRIAKEKGAETIATGTRRDDVA 75 (103)
T ss_pred HHHHHHHcCCCEEEEcCCcchHH
Confidence 44567778999999999876443
No 126
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=53.81 E-value=14 Score=23.95 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=11.8
Q ss_pred HHHHHHhhCCCCEEEEcCc
Q psy10860 35 ALALLQRQLDVDILISGHT 53 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHt 53 (91)
.+.+.+++.+++.|+.||+
T Consensus 87 ~l~~~a~~~g~~~i~~GHh 105 (182)
T PF01171_consen 87 FLREIAKEEGCNKIALGHH 105 (182)
T ss_dssp HHHHHHHTTT-CEEE---B
T ss_pred HHHHhhhcccccceeecCc
Confidence 4556777889999999997
No 127
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=53.65 E-value=42 Score=19.33 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=24.6
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCcc
Q psy10860 18 RIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFE 57 (91)
Q Consensus 18 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~ 57 (91)
...+..|+. .+.+.+.+++.++|++|.|......
T Consensus 82 ~~~~~~~~~------~~~i~~~~~~~~~dliv~G~~~~~~ 115 (140)
T PF00582_consen 82 EVVIESGDV------ADAIIEFAEEHNADLIVMGSRGRSG 115 (140)
T ss_dssp EEEEEESSH------HHHHHHHHHHTTCSEEEEESSSTTS
T ss_pred EEEEEeecc------chhhhhccccccceeEEEeccCCCC
Confidence 344555543 4677778889999999999988543
No 128
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=53.60 E-value=18 Score=23.23 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=16.7
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+.+++.+++.++.||+--
T Consensus 87 ~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 87 FFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred HHHHHHHHcCCCEEEEcCCcH
Confidence 355577788999999999855
No 129
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=53.34 E-value=17 Score=23.54 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=17.6
Q ss_pred HHHHHHHhhCCCCEEEEcCccC
Q psy10860 34 EALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GHtH~ 55 (91)
+.+.+.+++.++|+|++|||-.
T Consensus 81 ~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 81 KALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHhCCCEEEECCccc
Confidence 3455666777899999999987
No 130
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=52.58 E-value=19 Score=24.16 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=10.9
Q ss_pred hCCC-CEEEEcCccCc
Q psy10860 42 QLDV-DILISGHTHKF 56 (91)
Q Consensus 42 ~~~~-dvvi~GHtH~~ 56 (91)
..++ .|+|+|||.--
T Consensus 83 ~l~v~~ivV~GH~~Cg 98 (190)
T cd00884 83 VLKVEHIVVCGHSDCG 98 (190)
T ss_pred HhCCCEEEEeCCCcch
Confidence 3344 68999999764
No 131
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=51.92 E-value=50 Score=19.68 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=25.9
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccEE
Q psy10860 18 RIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAY 59 (91)
Q Consensus 18 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~~ 59 (91)
...+.+|.+ ..+.+...+.+.++|+++.|........
T Consensus 92 ~~~~~~g~~-----~~~~i~~~a~~~~adliV~G~~g~~~l~ 128 (154)
T COG0589 92 ETEVVEGSP-----SAEEILELAEEEDADLIVVGSRGRSGLS 128 (154)
T ss_pred EEEEecCCC-----cHHHHHHHHHHhCCCEEEECCCCCcccc
Confidence 455566654 3466777777789999999998665443
No 132
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=51.14 E-value=21 Score=23.61 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=11.1
Q ss_pred CCC-CEEEEcCccCcc
Q psy10860 43 LDV-DILISGHTHKFE 57 (91)
Q Consensus 43 ~~~-dvvi~GHtH~~~ 57 (91)
.++ .|+|+|||.--.
T Consensus 78 L~v~~IvV~GHs~CGa 93 (182)
T cd00883 78 LKVKHIIVCGHYGCGG 93 (182)
T ss_pred cCCCEEEEecCCCchH
Confidence 344 699999998743
No 133
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=50.85 E-value=16 Score=23.22 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=16.5
Q ss_pred HHHHHHHhhCCCCEEEEcCccC
Q psy10860 34 EALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GHtH~ 55 (91)
..+.+.+++.++|+|++|+|-.
T Consensus 80 ~~l~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 80 DALAELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp HHHHHHHHHHT-SEEEEESSHH
T ss_pred HHHHHHHHhcCCCEEEEcCcCC
Confidence 3566677788999999999854
No 134
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=50.56 E-value=20 Score=22.95 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=16.1
Q ss_pred HHHHHHhhCCCCEEEEcCcc
Q psy10860 35 ALALLQRQLDVDILISGHTH 54 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH 54 (91)
.+.++.++.++|+|||-|-=
T Consensus 80 ~l~~~l~~~~PD~IIsThp~ 99 (169)
T PF06925_consen 80 RLIRLLREFQPDLIISTHPF 99 (169)
T ss_pred HHHHHHhhcCCCEEEECCcc
Confidence 45667778999999998864
No 135
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=50.34 E-value=24 Score=21.43 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=22.8
Q ss_pred EEEEecCCCCC---------CCCCHHHHHHHHhhCCCCEEEEc
Q psy10860 18 RIGLCHGHDII---------PWGDPEALALLQRQLDVDILISG 51 (91)
Q Consensus 18 ~i~~~Hg~~~~---------~~~~~~~l~~~~~~~~~dvvi~G 51 (91)
++++.-|.+-. ...+.+.+.+++++.++|++|.|
T Consensus 27 ~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvvG 69 (100)
T PF02844_consen 27 EVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLVVVG 69 (100)
T ss_dssp EEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEEES
T ss_pred EEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 56666665421 12467788999999999999988
No 136
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=50.27 E-value=14 Score=23.92 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=32.4
Q ss_pred EEEEecCCCCCC----------CCCHH----HHHHHHhhCCCCEEEEcCccCccE-------EEECCEEEEccCCcC
Q psy10860 18 RIGLCHGHDIIP----------WGDPE----ALALLQRQLDVDILISGHTHKFEA-------YEHENKFYINPGSAT 73 (91)
Q Consensus 18 ~i~~~Hg~~~~~----------~~~~~----~l~~~~~~~~~dvvi~GHtH~~~~-------~~~~~~~~iNPGS~~ 73 (91)
||++.||+-.+- ..+.+ .+++.+++.+.++-++=--|.-.. ...-.-++||||+.+
T Consensus 1 ~ilvlnGPNLNlLG~REp~iYG~~tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 77 (141)
T TIGR01088 1 KILVLNGPNLNMLGLREPGVYGSQTLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALT 77 (141)
T ss_pred CEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHh
Confidence 578899865421 12333 344566666777777655554221 111245899999876
No 137
>PRK00865 glutamate racemase; Provisional
Probab=50.11 E-value=15 Score=25.52 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=23.4
Q ss_pred hhCCCCEEEEcCccCccEEEE-----C-CEEEEccCC
Q psy10860 41 RQLDVDILISGHTHKFEAYEH-----E-NKFYINPGS 71 (91)
Q Consensus 41 ~~~~~dvvi~GHtH~~~~~~~-----~-~~~~iNPGS 71 (91)
.+.++|.+|-|.||.|..... + +..+|+|..
T Consensus 174 ~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~vIDp~~ 210 (261)
T PRK00865 174 LAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGE 210 (261)
T ss_pred hcCCCCEEEECCcCHHHHHHHHHHHcCCCCEEECCHH
Confidence 345899999999999976422 2 467888875
No 138
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=49.91 E-value=16 Score=23.82 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=33.3
Q ss_pred EEEEEecCCCCCC----------CCCHH----HHHHHHhhCCCCEEEEcCccCccE-------EEECCEEEEccCCcC
Q psy10860 17 FRIGLCHGHDIIP----------WGDPE----ALALLQRQLDVDILISGHTHKFEA-------YEHENKFYINPGSAT 73 (91)
Q Consensus 17 ~~i~~~Hg~~~~~----------~~~~~----~l~~~~~~~~~dvvi~GHtH~~~~-------~~~~~~~~iNPGS~~ 73 (91)
.+|++.||+-.+- ..+.+ .+++.+++.+.++-++=--|.-.. ...-.-++||||+.+
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~T 79 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYT 79 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHH
Confidence 3689999976421 12333 344556666777777655444221 111256899999876
No 139
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=49.72 E-value=22 Score=23.00 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=16.5
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+.+++.++++|+.||+=-
T Consensus 90 ~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 90 FFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHHHHHHcCCCEEEEcCccH
Confidence 445577788999999999744
No 140
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=48.39 E-value=30 Score=20.79 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=13.8
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhh
Q psy10860 18 RIGLCHGHDIIPWGDPEALALLQRQ 42 (91)
Q Consensus 18 ~i~~~Hg~~~~~~~~~~~l~~~~~~ 42 (91)
-+++.||++...+.....+.+.+++
T Consensus 3 illvgHGSr~~~~~~~~~l~~~l~~ 27 (103)
T cd03413 3 VVFMGHGTDHPSNAVYAALEYVLRE 27 (103)
T ss_pred EEEEECCCCchhhhHHHHHHHHHHh
Confidence 3678899986433233344444443
No 141
>KOG2836|consensus
Probab=48.35 E-value=75 Score=20.81 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=37.9
Q ss_pred CCceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEE--EcCccCccEEEECCEEEE-ccCCcCCC
Q psy10860 6 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILI--SGHTHKFEAYEHENKFYI-NPGSATGA 75 (91)
Q Consensus 6 lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi--~GHtH~~~~~~~~~~~~i-NPGS~~~~ 75 (91)
-|.-..+.+.+.|++++|-.. +.+...+.+.++..++..++ |--|=--...+.+|..++ =|++-|.|
T Consensus 6 rPAPveIsy~~MrFLIThnPt---naTln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~p 75 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITHNPT---NATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAP 75 (173)
T ss_pred CCCCeeeeccceEEEEecCCC---chhHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCC
Confidence 466678899999999999643 22334444556677777554 322222111223565554 35555544
No 142
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=48.08 E-value=20 Score=21.63 Aligned_cols=10 Identities=50% Similarity=0.982 Sum_probs=8.8
Q ss_pred CCCEEEEcCc
Q psy10860 44 DVDILISGHT 53 (91)
Q Consensus 44 ~~dvvi~GHt 53 (91)
+.++++.||+
T Consensus 63 ~~~i~itGHS 72 (140)
T PF01764_consen 63 DYSIVITGHS 72 (140)
T ss_dssp TSEEEEEEET
T ss_pred Cccchhhccc
Confidence 4789999997
No 143
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=48.00 E-value=22 Score=24.70 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=16.9
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+.+++.+++.|+.||+=-
T Consensus 111 ~l~~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 111 LLYKIAKELGADKIATGHHLD 131 (298)
T ss_pred HHHHHHHHcCCCeEEeccCcH
Confidence 455677889999999999744
No 144
>TIGR00035 asp_race aspartate racemase.
Probab=47.48 E-value=20 Score=24.28 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=16.3
Q ss_pred hCCCCEEEEcCccCccEEE
Q psy10860 42 QLDVDILISGHTHKFEAYE 60 (91)
Q Consensus 42 ~~~~dvvi~GHtH~~~~~~ 60 (91)
+.++|.+|.|.||.|....
T Consensus 185 ~~gad~iILgCTelpll~~ 203 (229)
T TIGR00035 185 ERGAEGIILGCTELSLILK 203 (229)
T ss_pred hCCCCEEEEeCcchHhhcc
Confidence 5689999999999997764
No 145
>KOG1432|consensus
Probab=47.47 E-value=95 Score=23.30 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHHhhCCCCEEEEcCccCcc-EEEECC-EEEEccCCcCCC
Q psy10860 36 LALLQRQLDVDILISGHTHKFE-AYEHEN-KFYINPGSATGA 75 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHtH~~~-~~~~~~-~~~iNPGS~~~~ 75 (91)
+..+....+++.++|||-|.-. .-+..+ .+++=.|+.|..
T Consensus 291 ~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyg 332 (379)
T KOG1432|consen 291 LTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYG 332 (379)
T ss_pred HHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccC
Confidence 4444446789999999999964 344455 777778887665
No 146
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=47.05 E-value=55 Score=21.25 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=18.5
Q ss_pred CEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEc
Q psy10860 16 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISG 51 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~G 51 (91)
+.+|.-+|..++ .....+.+.+..++.++|+|+.|
T Consensus 74 ~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 74 GLRIVGYHHGYF-DEEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred CeEEEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEE
Confidence 445554443333 11233445555566778887776
No 147
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=46.59 E-value=15 Score=23.70 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=32.1
Q ss_pred EEEEecCCCCCC----------CCCHH----HHHHHHhhCCCCEEEEcCccCccE-------EEECCEEEEccCCcC
Q psy10860 18 RIGLCHGHDIIP----------WGDPE----ALALLQRQLDVDILISGHTHKFEA-------YEHENKFYINPGSAT 73 (91)
Q Consensus 18 ~i~~~Hg~~~~~----------~~~~~----~l~~~~~~~~~dvvi~GHtH~~~~-------~~~~~~~~iNPGS~~ 73 (91)
+|++.||+-..- ..+.+ .+++.+++.+.++-++=--|.-.. ...-+-++||||..+
T Consensus 1 ~ilvinGPNLN~LG~Rep~iYG~~tl~~i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~T 77 (140)
T cd00466 1 KILVLNGPNLNLLGKREPEIYGTTTLADIEALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYT 77 (140)
T ss_pred CEEEEeCCCccccCCCCCCcCCcCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHH
Confidence 478899865421 12333 344555666777776655444221 111356899999875
No 148
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=46.17 E-value=8.8 Score=21.77 Aligned_cols=9 Identities=56% Similarity=0.936 Sum_probs=7.7
Q ss_pred CCEEEEcCc
Q psy10860 45 VDILISGHT 53 (91)
Q Consensus 45 ~dvvi~GHt 53 (91)
-|++++|||
T Consensus 3 gDliFSGHt 11 (74)
T PF14360_consen 3 GDLIFSGHT 11 (74)
T ss_pred CCEEEchhH
Confidence 389999997
No 149
>PLN03014 carbonic anhydrase
Probab=45.88 E-value=25 Score=26.06 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=11.1
Q ss_pred hCCC-CEEEEcCccCc
Q psy10860 42 QLDV-DILISGHTHKF 56 (91)
Q Consensus 42 ~~~~-dvvi~GHtH~~ 56 (91)
..++ .|||+|||+--
T Consensus 216 ~L~V~~IVV~GHs~CG 231 (347)
T PLN03014 216 HLKVENIVVIGHSACG 231 (347)
T ss_pred HhCCCEEEEeCCCCch
Confidence 3444 68999999874
No 150
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=45.87 E-value=28 Score=22.16 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=16.4
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+.+++.++++++.||+--
T Consensus 97 ~l~~~a~~~g~~~l~~Gh~~d 117 (185)
T cd01993 97 LLNKIAKELGADKLATGHNLD 117 (185)
T ss_pred HHHHHHHHcCCCEEEEcCChH
Confidence 345567788999999999853
No 151
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=45.59 E-value=32 Score=22.34 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=30.1
Q ss_pred EEEEecCCCCCC----------CCCHH----HHHHHHhhCCCCEEEEcCccCccE-E---EECC--E-EEEccCCcCC
Q psy10860 18 RIGLCHGHDIIP----------WGDPE----ALALLQRQLDVDILISGHTHKFEA-Y---EHEN--K-FYINPGSATG 74 (91)
Q Consensus 18 ~i~~~Hg~~~~~----------~~~~~----~l~~~~~~~~~dvvi~GHtH~~~~-~---~~~~--~-~~iNPGS~~~ 74 (91)
+|++.+|+-.+- ..+.+ .+++.+++.+..+.++==-|.-.. . +-.+ . .+||||..+-
T Consensus 2 ~ilvlnGPNLN~LG~REp~iYG~~Tl~di~~~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~TH 79 (146)
T COG0757 2 KILVLNGPNLNLLGKREPGIYGSTTLEDIEADLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTH 79 (146)
T ss_pred eEEEEeCCCccccCCCCCCccCcccHHHHHHHHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchh
Confidence 688889866421 12333 334455566666665543333211 0 1111 2 8999998763
No 152
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=44.05 E-value=11 Score=18.65 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=20.2
Q ss_pred CCCEEEEcCccCccEEEECCEEEEccCC
Q psy10860 44 DVDILISGHTHKFEAYEHENKFYINPGS 71 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~~~~~~~~iNPGS 71 (91)
+.|+..||-||.......+...+.+--+
T Consensus 8 ~~~~~~C~GtHv~~t~~I~~i~i~~~~~ 35 (44)
T smart00863 8 DFDVELCGGTHVPNTGEIGAFKILSVSG 35 (44)
T ss_pred CEEEECCCCcccCChhhCcEEEEEEEee
Confidence 3578889999998777677666665443
No 153
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=43.98 E-value=40 Score=24.37 Aligned_cols=33 Identities=9% Similarity=-0.099 Sum_probs=22.6
Q ss_pred CCCCEEEEcCcc-CccEE----EECCEEEEccC-CcCCC
Q psy10860 43 LDVDILISGHTH-KFEAY----EHENKFYINPG-SATGA 75 (91)
Q Consensus 43 ~~~dvvi~GHtH-~~~~~----~~~~~~~iNPG-S~~~~ 75 (91)
.-+|++|-|-+. .++.. ..++.+++||| |...-
T Consensus 233 PlPd~ivL~D~s~~~~~~~~~~~~~~~~~~Np~gsF~~~ 271 (291)
T PTZ00235 233 PLPHFICVCDNSCNSFISYASEDTSDCIISNSDMSFTRK 271 (291)
T ss_pred CCCCEEEEecCCCCccceeecccCCceEEECCCCccCCC
Confidence 356889999985 44332 23589999995 87654
No 154
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.98 E-value=49 Score=21.50 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=19.9
Q ss_pred CCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEc
Q psy10860 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISG 51 (91)
Q Consensus 15 ~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~G 51 (91)
.+.+|.-+|..++... ..+.+.+...+.++|+|+.|
T Consensus 71 p~l~i~g~~~g~~~~~-~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 71 PGLKIVGYHHGYFGPE-EEEEIIERINASGADILFVG 106 (171)
T ss_pred CCcEEEEecCCCCChh-hHHHHHHHHHHcCCCEEEEE
Confidence 3455555443333322 22335556667888988877
No 155
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=43.23 E-value=40 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=23.1
Q ss_pred CHHHHHHHHhhCCCCEEEEcCccCccE
Q psy10860 32 DPEALALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 32 ~~~~l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
+.+++++.+++.++.++|+|-+=.++.
T Consensus 154 DyD~~~k~a~e~kPK~ii~G~SaY~r~ 180 (413)
T COG0112 154 DYDEVEKLAKEVKPKLIIAGGSAYSRP 180 (413)
T ss_pred CHHHHHHHHHHhCCCEEEECccccccc
Confidence 567889999999999999999877654
No 156
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=42.52 E-value=25 Score=25.27 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=19.5
Q ss_pred CCHHHHHHHHhhCCCCE-EEEcCccC
Q psy10860 31 GDPEALALLQRQLDVDI-LISGHTHK 55 (91)
Q Consensus 31 ~~~~~l~~~~~~~~~dv-vi~GHtH~ 55 (91)
..++.+..++++..+|+ ||.||-=.
T Consensus 140 eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 140 EMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred hchHHHHHHHHHhCCCEEEEeCchhh
Confidence 35677888889999995 78999744
No 157
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=41.46 E-value=56 Score=22.90 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=18.7
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccE
Q psy10860 17 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
..++++|||.... ..+.. +|.||.|-...
T Consensus 129 ~~~~~~HGh~~~~------------~~~~~-~I~GHeHPav~ 157 (235)
T COG1407 129 GGLLFRHGHKEPE------------PEGLE-VIIGHEHPAVR 157 (235)
T ss_pred cCEEEEeCCCCCc------------cccce-EEcccCCccEE
Confidence 4589999986311 11111 89999997644
No 158
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=40.79 E-value=58 Score=19.72 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=20.1
Q ss_pred HHHHHHHHhhCCCCEEEEcCccCccE
Q psy10860 33 PEALALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 33 ~~~l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
.+.+.+.+++.++|+|+.|...+...
T Consensus 92 ~~~I~~~a~~~~~dlIV~Gs~g~~~l 117 (146)
T cd01989 92 AKAIVEYVADHGITKLVMGASSDNHF 117 (146)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCce
Confidence 45677788889999999998766543
No 159
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=40.33 E-value=35 Score=26.89 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=25.3
Q ss_pred HHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 38 LLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 38 ~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
+.+++.+.|+||.-|- .|....-+...+|||=-.+.+
T Consensus 145 ~~a~~~gidvIVtDHH-~~~~~~P~a~a~iNP~~~~~~ 181 (575)
T PRK11070 145 AHAHALGIPVLVTDHH-LPGETLPAADAIINPNLRDCN 181 (575)
T ss_pred HHHHHCCCCEEEECCC-CCCCCCCCCeEEECCCCcCCC
Confidence 3567889999999995 443222234568999776544
No 160
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=40.09 E-value=36 Score=22.75 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+++++.++|+|++|||-.
T Consensus 99 al~~~i~~~~p~lVL~~~t~~ 119 (202)
T cd01714 99 ALAAAIKKIGVDLILTGKQSI 119 (202)
T ss_pred HHHHHHHHhCCCEEEEcCCcc
Confidence 455566667899999999995
No 161
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=40.03 E-value=18 Score=26.52 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=9.1
Q ss_pred EEEEccCCcCC
Q psy10860 64 KFYINPGSATG 74 (91)
Q Consensus 64 ~~~iNPGS~~~ 74 (91)
.+.|||||.+.
T Consensus 5 iltINPGstst 15 (358)
T COG3426 5 ILTINPGSTST 15 (358)
T ss_pred EEEecCCCccc
Confidence 67899999764
No 162
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=39.89 E-value=10 Score=26.54 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.7
Q ss_pred EECCEEEEccCCcCCC
Q psy10860 60 EHENKFYINPGSATGA 75 (91)
Q Consensus 60 ~~~~~~~iNPGS~~~~ 75 (91)
+-+..+++|=||+++|
T Consensus 100 ~g~RPLVlnFGS~TCP 115 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCP 115 (237)
T ss_pred cCCCCeEEEcccccch
Confidence 3467899999999998
No 163
>PRK10437 carbonic anhydrase; Provisional
Probab=38.89 E-value=44 Score=23.07 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=9.3
Q ss_pred CEEEEcCccCc
Q psy10860 46 DILISGHTHKF 56 (91)
Q Consensus 46 dvvi~GHtH~~ 56 (91)
.|+|+|||.--
T Consensus 92 ~IvV~GHt~CG 102 (220)
T PRK10437 92 HIIICGHYGCG 102 (220)
T ss_pred EEEEeCCCCch
Confidence 69999999763
No 164
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=37.39 E-value=38 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=20.8
Q ss_pred CEEEEcCccCcc--EEEECCEEEEccCCcC
Q psy10860 46 DILISGHTHKFE--AYEHENKFYINPGSAT 73 (91)
Q Consensus 46 dvvi~GHtH~~~--~~~~~~~~~iNPGS~~ 73 (91)
+.||+|||=... ....++++-|--|++.
T Consensus 178 ~~Vv~GHt~~~~~~~~~~~~~i~iDTGA~~ 207 (222)
T cd07413 178 KPVFVGHYWLNGEPAPLNPNVACLDYSAAK 207 (222)
T ss_pred CCEEEecCCCCCCCccccCCEEEEeccccc
Confidence 679999997743 3444778778888864
No 165
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=36.94 E-value=45 Score=18.77 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCCEEEEcCccCcc
Q psy10860 34 EALALLQRQLDVDILISGHTHKFE 57 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GHtH~~~ 57 (91)
..+.+++...++|++|+|+.-...
T Consensus 43 ~~~~~~l~~~~v~~li~~~iG~~~ 66 (94)
T PF02579_consen 43 DKIAKFLAEEGVDVLICGGIGEGA 66 (94)
T ss_dssp THHHHHHHHTTESEEEESCSCHHH
T ss_pred hhHHHHHHHcCCCEEEEeCCCHHH
Confidence 355666667899999999986643
No 166
>PLN03006 carbonate dehydratase
Probab=36.87 E-value=43 Score=24.35 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=11.6
Q ss_pred hCCC-CEEEEcCccCcc
Q psy10860 42 QLDV-DILISGHTHKFE 57 (91)
Q Consensus 42 ~~~~-dvvi~GHtH~~~ 57 (91)
..++ .|+|+||++--.
T Consensus 168 ~L~V~~IVV~GHs~CGa 184 (301)
T PLN03006 168 TLNVENILVIGHSRCGG 184 (301)
T ss_pred HhCCCEEEEecCCCchH
Confidence 3454 699999998743
No 167
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=34.89 E-value=73 Score=21.84 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCc
Q psy10860 17 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHT 53 (91)
Q Consensus 17 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHt 53 (91)
.||.++-|+.. +.+. .+.+.++|++|+|..
T Consensus 171 ~rVav~~GsG~------~~i~-~a~~~g~D~~ITGd~ 200 (241)
T PF01784_consen 171 KRVAVCGGSGG------SFIE-EAAEAGADVYITGDI 200 (241)
T ss_dssp EEEEEECSSSG------GGHH-HHHHTTSSEEEESS-
T ss_pred cEEEEEcccCc------cHHH-HHHhCCCeEEEEccC
Confidence 47899998763 2333 444679999999987
No 168
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=34.85 E-value=50 Score=22.50 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=11.6
Q ss_pred hCCC-CEEEEcCccCcc
Q psy10860 42 QLDV-DILISGHTHKFE 57 (91)
Q Consensus 42 ~~~~-dvvi~GHtH~~~ 57 (91)
..++ .|+|+|||---.
T Consensus 88 ~L~v~~IiV~GH~~CGa 104 (207)
T COG0288 88 VLGVKEIIVCGHTDCGA 104 (207)
T ss_pred HcCCCEEEEecCCCcHH
Confidence 3455 589999998743
No 169
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=34.71 E-value=30 Score=24.99 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=19.0
Q ss_pred CHHHHHHHHhhCCCCE-EEEcCccC
Q psy10860 32 DPEALALLQRQLDVDI-LISGHTHK 55 (91)
Q Consensus 32 ~~~~l~~~~~~~~~dv-vi~GHtH~ 55 (91)
.++.+.+++++..+|+ ||.||-=.
T Consensus 142 qp~~i~~Ll~~~~PDIlViTGHD~~ 166 (287)
T PF05582_consen 142 QPEKIYRLLEEYRPDILVITGHDGY 166 (287)
T ss_pred hhHHHHHHHHHcCCCEEEEeCchhh
Confidence 4667788889999995 78999653
No 170
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=34.63 E-value=26 Score=24.63 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=15.4
Q ss_pred HHHHHHHHhhCCCCEEEEcC
Q psy10860 33 PEALALLQRQLDVDILISGH 52 (91)
Q Consensus 33 ~~~l~~~~~~~~~dvvi~GH 52 (91)
...|.+..++.++|+|+||.
T Consensus 101 A~~La~ai~~~~~DLVl~G~ 120 (256)
T PRK03359 101 ASALAAAAQKAGFDLILCGD 120 (256)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 44566677777899999995
No 171
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=34.61 E-value=1.3e+02 Score=24.27 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHHHHHHhhCCCC----EEEEcCccCccE-----EEECCEEEEccCCcCCCCCCCCCCCceEEEeeC
Q psy10860 33 PEALALLQRQLDVD----ILISGHTHKFEA-----YEHENKFYINPGSATGAFNPLEPLNGRYANVKS 91 (91)
Q Consensus 33 ~~~l~~~~~~~~~d----vvi~GHtH~~~~-----~~~~~~~~iNPGS~~~~~~~~~~~~a~Y~il~~ 91 (91)
.+...+.+++.+.| -||.|||=+-.. .+-+|+++|=-|-.+..+... ..-|.|.++-|
T Consensus 508 e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskAYqk~-TGIAGYTLiyN 574 (640)
T PF06874_consen 508 EEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKAYQKT-TGIAGYTLIYN 574 (640)
T ss_pred HHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhhhccc-cCccceEEEec
Confidence 34445566666666 899999866422 123799998889888887653 34688988743
No 172
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=34.38 E-value=97 Score=17.95 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=10.4
Q ss_pred HHhhCCCCEEEEcCccC
Q psy10860 39 LQRQLDVDILISGHTHK 55 (91)
Q Consensus 39 ~~~~~~~dvvi~GHtH~ 55 (91)
.+...+..+++.=|+|-
T Consensus 50 ~a~~~~~~~v~i~HsHP 66 (101)
T cd08059 50 AALEIGMKVVGLVHSHP 66 (101)
T ss_pred HHhhCCCcEEEEEecCc
Confidence 33445666777777775
No 173
>PRK08349 hypothetical protein; Validated
Probab=34.25 E-value=51 Score=21.74 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=15.2
Q ss_pred HHHHHHhhCCCCEEEEcCc
Q psy10860 35 ALALLQRQLDVDILISGHT 53 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHt 53 (91)
.+.+++++.+++.|+.||+
T Consensus 96 ~a~~~A~~~g~~~I~tG~~ 114 (198)
T PRK08349 96 KAERIAHEIGASAIITGDS 114 (198)
T ss_pred HHHHHHHHcCCCEEEEecC
Confidence 3456777899999999984
No 174
>PHA02239 putative protein phosphatase
Probab=34.04 E-value=52 Score=22.66 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=29.5
Q ss_pred EEEEecCCCCCC----CCCHHHHHHHHh----hCCCCEEEEcCccCcc--EEEECCEEEEccCCcC
Q psy10860 18 RIGLCHGHDIIP----WGDPEALALLQR----QLDVDILISGHTHKFE--AYEHENKFYINPGSAT 73 (91)
Q Consensus 18 ~i~~~Hg~~~~~----~~~~~~l~~~~~----~~~~dvvi~GHtH~~~--~~~~~~~~~iNPGS~~ 73 (91)
..+++|+..... ..+.+.+ .+.+ ...-.+||+|||=... ....+++.-|--|++-
T Consensus 157 ~~ifVHAGi~p~~~~~~q~~~~l-lWiR~f~~~~~g~~vV~GHTp~~~~~~~~~~~~I~IDtGa~~ 221 (235)
T PHA02239 157 KYIFSHSGGVSWKPVEEQTIDQL-IWSRDFQPRKDGFTYVCGHTPTDSGEVEINGDMLMCDVGAVF 221 (235)
T ss_pred CEEEEeCCCCCCCChhhCCHhHe-EEecccCCCCCCcEEEECCCCCCCCcccccCCEEEeecCccc
Confidence 589999875311 1122221 1111 1233589999996632 3333556667777754
No 175
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=33.89 E-value=24 Score=21.99 Aligned_cols=15 Identities=13% Similarity=0.530 Sum_probs=12.7
Q ss_pred EEEEccCCcCCCCCC
Q psy10860 64 KFYINPGSATGAFNP 78 (91)
Q Consensus 64 ~~~iNPGS~~~~~~~ 78 (91)
+++||||.|+.....
T Consensus 95 tlWvDPgeVs~R~ge 109 (118)
T PF07742_consen 95 TLWVDPGEVSYRIGE 109 (118)
T ss_dssp EEEEETTEEEEEEST
T ss_pred EEEECCCEEEEEEcC
Confidence 688999999988655
No 176
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=33.72 E-value=55 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=16.4
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+++++.++++++.||.--
T Consensus 86 ~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 86 ALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred HHHHHHHHCCCCEEEEcCccc
Confidence 345577788999999999754
No 177
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=33.06 E-value=96 Score=17.53 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCCCCEEEEcCccCcc
Q psy10860 33 PEALALLQRQLDVDILISGHTHKFE 57 (91)
Q Consensus 33 ~~~l~~~~~~~~~dvvi~GHtH~~~ 57 (91)
.+.+.+.+++.++|+++.|......
T Consensus 82 ~~~i~~~~~~~~~dlvvig~~~~~~ 106 (130)
T cd00293 82 AEAILEAAEELGADLIVMGSRGRSG 106 (130)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 4677778888899999999776644
No 178
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=32.52 E-value=54 Score=20.70 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=10.1
Q ss_pred CEEEEcCccCccE
Q psy10860 46 DILISGHTHKFEA 58 (91)
Q Consensus 46 dvvi~GHtH~~~~ 58 (91)
.++++|||.--..
T Consensus 57 ~IiV~gHt~Cg~~ 69 (142)
T cd03379 57 EIIVIHHTDCGML 69 (142)
T ss_pred EEEEEeecCCcce
Confidence 6899999976443
No 179
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=31.44 E-value=58 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=15.7
Q ss_pred HHHHHHhhCCCCEEEEcCcc
Q psy10860 35 ALALLQRQLDVDILISGHTH 54 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH 54 (91)
.+..+.++.++|++|+|=.=
T Consensus 71 ~i~~mv~~~~pD~viaGPaF 90 (349)
T PF07355_consen 71 KILEMVKKLKPDVVIAGPAF 90 (349)
T ss_pred HHHHHHHhcCCCEEEEcCCc
Confidence 45567788999999999543
No 180
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=31.35 E-value=85 Score=23.90 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=27.7
Q ss_pred CHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCc
Q psy10860 32 DPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 72 (91)
Q Consensus 32 ~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~ 72 (91)
+..++.+++++.++|+++.|. +-.+..+.-++.+++.|+-
T Consensus 392 d~~el~~~i~~~~pDl~ig~~-~~~~~a~k~gIP~~~~~~~ 431 (466)
T TIGR01282 392 THYEFEEFVEKLKPDLVGSGI-KEKYVFQKMGVPFRQMHSW 431 (466)
T ss_pred CHHHHHHHHHHhCCCEEEecC-CccceeeecCCCccccccc
Confidence 556777788888999998655 5545555567777666653
No 181
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=31.31 E-value=1.2e+02 Score=24.05 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=28.9
Q ss_pred EEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEcCccCccE------EEE-CCEEEEccCC
Q psy10860 10 KVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEA------YEH-ENKFYINPGS 71 (91)
Q Consensus 10 ~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~GHtH~~~~------~~~-~~~~~iNPGS 71 (91)
..++.++.+++++ |+... ..++.+.+.....++|++..||----.. ... ....+|..|.
T Consensus 568 l~i~~~~~~~L~t-GD~~~--~~E~~l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~~v~P~~aiiS~g~ 633 (662)
T TIGR00361 568 LWVDDGGNSWLLT-GDLEA--EGEQEVMRVFPNIKADVLQVGHHGSKTSTSEELIQQVQPKVAIISAGR 633 (662)
T ss_pred EEEEECCeeEEEe-cCCCH--HHHHHHHhcccCcCccEEEeCCCCCCCCChHHHHHhcCCCEEEEECCC
Confidence 3445555566555 44310 0111222212245789999999643221 122 4666775553
No 182
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=31.07 E-value=19 Score=18.22 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=14.0
Q ss_pred CCCEEEEcCccCccEEEECCEEEE
Q psy10860 44 DVDILISGHTHKFEAYEHENKFYI 67 (91)
Q Consensus 44 ~~dvvi~GHtH~~~~~~~~~~~~i 67 (91)
+.|+-+||-||.+.....+...++
T Consensus 8 ~~~~~~C~GtHv~~T~~i~~~~i~ 31 (44)
T PF07973_consen 8 DFDVDLCGGTHVPNTGEIGHFKIL 31 (44)
T ss_dssp TTEEEEESS---SBGGGG-CEEEE
T ss_pred CeeEECCCCcccCChhEECcEEEE
Confidence 468899999999876555555554
No 183
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=30.48 E-value=61 Score=20.04 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=14.8
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+...++.....|.|.|||=.
T Consensus 51 ~ia~~l~~~~~~i~I~GhTD~ 71 (137)
T TIGR03350 51 RIAKALAAVPGRITVVGHTDN 71 (137)
T ss_pred HHHHHHHhCCCeEEEEEecCC
Confidence 334445555678999999976
No 184
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=30.33 E-value=53 Score=21.34 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=10.2
Q ss_pred hCCC-CEEEEcCccC
Q psy10860 42 QLDV-DILISGHTHK 55 (91)
Q Consensus 42 ~~~~-dvvi~GHtH~ 55 (91)
..++ .++|+|||.-
T Consensus 88 ~l~v~~IvV~GHt~C 102 (154)
T cd03378 88 VLGVPLVVVLGHESC 102 (154)
T ss_pred HhCCCEEEEEcCCCc
Confidence 3344 6899999974
No 185
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=30.30 E-value=1.4e+02 Score=21.13 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=18.6
Q ss_pred HhhCCCCEEEEcCccCccEEE-E--CCEEEEc
Q psy10860 40 QRQLDVDILISGHTHKFEAYE-H--ENKFYIN 68 (91)
Q Consensus 40 ~~~~~~dvvi~GHtH~~~~~~-~--~~~~~iN 68 (91)
.-+-.+..|+--|||.|-... + +|+.+|-
T Consensus 160 ~lDGrvsaV~GTHTHVqTaDerILp~GTaYiT 191 (253)
T PF13277_consen 160 YLDGRVSAVVGTHTHVQTADERILPGGTAYIT 191 (253)
T ss_dssp HHBTTBSEEEEESSSS-BS--EE-TTS-EEES
T ss_pred HhCCcEEEEEeCCCCccCchhhccCCCCEEEe
Confidence 335688999999999986433 2 5777763
No 186
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=30.24 E-value=85 Score=25.45 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=25.1
Q ss_pred ECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEEc
Q psy10860 14 VGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISG 51 (91)
Q Consensus 14 ~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~G 51 (91)
+.+.+|.++||-... ...+++.+.+++.+.|++|+-
T Consensus 505 ~~~~~vgL~HGrm~~--~eKd~vM~~Fk~~e~~ILVaT 540 (677)
T COG1200 505 LPELKVGLVHGRMKP--AEKDAVMEAFKEGEIDILVAT 540 (677)
T ss_pred cccceeEEEecCCCh--HHHHHHHHHHHcCCCcEEEEe
Confidence 457889999997632 123455566777788998873
No 187
>PLN03019 carbonic anhydrase
Probab=29.11 E-value=64 Score=23.79 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=9.5
Q ss_pred CEEEEcCccCc
Q psy10860 46 DILISGHTHKF 56 (91)
Q Consensus 46 dvvi~GHtH~~ 56 (91)
.|||+|||+--
T Consensus 216 ~IVV~GHs~CG 226 (330)
T PLN03019 216 NIVVIGHSACG 226 (330)
T ss_pred EEEEecCCCch
Confidence 69999999874
No 188
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=28.95 E-value=73 Score=20.39 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=15.2
Q ss_pred HHHHHhhCCCCEEEEcCcc
Q psy10860 36 LALLQRQLDVDILISGHTH 54 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHtH 54 (91)
+.+.+++.+++.|+.||.=
T Consensus 95 ~~~~A~~~g~~~I~~G~~~ 113 (177)
T cd01712 95 AEKLAEELGADAIVTGESL 113 (177)
T ss_pred HHHHHHHcCCCEEEEccCc
Confidence 4456778899999999963
No 189
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=28.83 E-value=71 Score=18.35 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=15.6
Q ss_pred cCccEEEECCEEEEccCCcCCC
Q psy10860 54 HKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 54 H~~~~~~~~~~~~iNPGS~~~~ 75 (91)
|.|.++..++.+.|..||+--|
T Consensus 4 HvP~ie~~~~~v~V~VG~v~HP 25 (78)
T cd03171 4 HVPVIEKIGGGIKVKVGSVAHP 25 (78)
T ss_pred cceEEEEcCCEEEEEECcccCC
Confidence 7777777777777777775555
No 190
>PRK15219 carbonic anhydrase; Provisional
Probab=28.29 E-value=74 Score=22.30 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=11.1
Q ss_pred hCCC-CEEEEcCccCc
Q psy10860 42 QLDV-DILISGHTHKF 56 (91)
Q Consensus 42 ~~~~-dvvi~GHtH~~ 56 (91)
..++ .|+|+|||+--
T Consensus 139 ~L~v~~IvVlGHt~CG 154 (245)
T PRK15219 139 VAGAKVVLVMGHTACG 154 (245)
T ss_pred HcCCCEEEEecCCcch
Confidence 3444 68999999874
No 191
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=28.26 E-value=72 Score=19.76 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=16.2
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+.+++.++++++.||.-.
T Consensus 93 ~~~~~A~~~g~~~il~G~~~d 113 (154)
T cd01996 93 SLYKVALKFGIPLIITGENPA 113 (154)
T ss_pred HHHHHHHHhCcCEEEeCcCHH
Confidence 345567788999999999744
No 192
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=28.24 E-value=27 Score=20.57 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=12.6
Q ss_pred CCCEEEEcCc--cCccEE
Q psy10860 44 DVDILISGHT--HKFEAY 59 (91)
Q Consensus 44 ~~dvvi~GHt--H~~~~~ 59 (91)
+-|+.++||+ |+|-.-
T Consensus 35 ERdi~lfGr~l~hIPPLC 52 (84)
T PF06967_consen 35 ERDIKLFGRKLFHIPPLC 52 (84)
T ss_pred cceEEECCeeEEecCCCC
Confidence 5689999999 787543
No 193
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=27.80 E-value=76 Score=21.92 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHHHHhhCCCCEEEEcCcc
Q psy10860 35 ALALLQRQLDVDILISGHTH 54 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH 54 (91)
.+.+.+++.+++.|+.||+=
T Consensus 122 ~l~~~a~~~g~~~Ia~GH~~ 141 (258)
T PRK10696 122 ILYRTARELGATKIALGHHR 141 (258)
T ss_pred HHHHHHHHcCCCEEEEcCch
Confidence 34556778899999999974
No 194
>PRK10040 hypothetical protein; Provisional
Probab=27.79 E-value=37 Score=18.07 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.7
Q ss_pred CCEEEEccCCcCCCC
Q psy10860 62 ENKFYINPGSATGAF 76 (91)
Q Consensus 62 ~~~~~iNPGS~~~~~ 76 (91)
+++.+.|-||+++.+
T Consensus 33 g~~FvCnDGSiS~Sk 47 (52)
T PRK10040 33 GGKFVCNDGSISASK 47 (52)
T ss_pred CCEEEeCCCchhhhh
Confidence 788899999998764
No 195
>TIGR00320 dfx_rbo desulfoferrodoxin. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough.
Probab=27.54 E-value=72 Score=20.01 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=19.2
Q ss_pred ccCccEEEECCEEEEccCCcCCC
Q psy10860 53 THKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 53 tH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
-|.|.++..++.+.|..||+--|
T Consensus 48 kHvP~ie~~~~~~~V~vG~v~Hp 70 (125)
T TIGR00320 48 KHVPVIEKTGNGYKVKVGSVAHP 70 (125)
T ss_pred CcceEEEEcCCeEEEEECcccCC
Confidence 78998888888888999987666
No 196
>PRK12342 hypothetical protein; Provisional
Probab=27.48 E-value=75 Score=22.36 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=14.5
Q ss_pred HHHHHHHhhCCCCEEEEcC
Q psy10860 34 EALALLQRQLDVDILISGH 52 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GH 52 (91)
..|.+..+..++|+|+||.
T Consensus 99 ~~La~~i~~~~~DLVl~G~ 117 (254)
T PRK12342 99 KALAAAIEKIGFDLLLFGE 117 (254)
T ss_pred HHHHHHHHHhCCCEEEEcC
Confidence 4566666677899999994
No 197
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=27.12 E-value=1.2e+02 Score=19.71 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=19.0
Q ss_pred CEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEEEE
Q psy10860 16 QFRIGLCHGHDIIPWGDPEALALLQRQLDVDILIS 50 (91)
Q Consensus 16 g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvvi~ 50 (91)
+..|+++||.+.........+..++++.+.+++..
T Consensus 25 ~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~ 59 (288)
T TIGR01250 25 KIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMY 59 (288)
T ss_pred CCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEE
Confidence 34699999965433222233444554445666554
No 198
>COG0400 Predicted esterase [General function prediction only]
Probab=26.95 E-value=1.2e+02 Score=20.66 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=25.7
Q ss_pred EEEECCEEEEEecCCCCC--CCCCHHHHHHHHhhCCCCEEE
Q psy10860 11 VVTVGQFRIGLCHGHDII--PWGDPEALALLQRQLDVDILI 49 (91)
Q Consensus 11 ~~~~~g~~i~~~Hg~~~~--~~~~~~~l~~~~~~~~~dvvi 49 (91)
.-...+..|+++||.... +..-..++.+.++..++++-.
T Consensus 141 ~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~ 181 (207)
T COG0400 141 LPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEV 181 (207)
T ss_pred ccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEE
Confidence 335678899999998753 222345666666677777644
No 199
>COG1647 Esterase/lipase [General function prediction only]
Probab=26.73 E-value=1.5e+02 Score=20.91 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=31.9
Q ss_pred CceEEEEECCEEEEEecCCCCCCCCCHHHHHHHHhhCCCCEE---EEcCccCc
Q psy10860 7 PEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDIL---ISGHTHKF 56 (91)
Q Consensus 7 P~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~dvv---i~GHtH~~ 56 (91)
|....++-++.-+++.||-.-.+ .+...|.+.+.+.+.++- .=||-+.|
T Consensus 6 p~pf~f~~G~~AVLllHGFTGt~-~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~ 57 (243)
T COG1647 6 PKPFTFEGGNRAVLLLHGFTGTP-RDVRMLGRYLNENGYTVYAPRYPGHGTLP 57 (243)
T ss_pred CCCeeeccCCEEEEEEeccCCCc-HHHHHHHHHHHHCCceEecCCCCCCCCCH
Confidence 55577888889999999865322 133455556666666653 34787776
No 200
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=26.69 E-value=98 Score=18.02 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=15.0
Q ss_pred HHHHHHHhhCCCCEEEEcCccCcc
Q psy10860 34 EALALLQRQLDVDILISGHTHKFE 57 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GHtH~~~ 57 (91)
+.++++.+ .+.+|..+|++|...
T Consensus 48 ~~l~~l~~-~G~ei~~H~~~H~~~ 70 (123)
T PF01522_consen 48 DQLRELAA-AGHEIGNHGWSHPNL 70 (123)
T ss_dssp HHHHHHHH-TT-EEEEE-SSSSCG
T ss_pred ccchhHHH-HHHHHHhcCCccccc
Confidence 45555554 569999999999964
No 201
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=26.49 E-value=1.3e+02 Score=22.14 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.2
Q ss_pred HHHHHhhCCCCEEEEcCc
Q psy10860 36 LALLQRQLDVDILISGHT 53 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHt 53 (91)
+.+++++.++|.|+.||.
T Consensus 105 l~~~A~~~G~~~IATGHy 122 (360)
T PRK14665 105 LAKIADEMGIFYLATGHY 122 (360)
T ss_pred HHHHHHHcCCCEEEECCc
Confidence 456677889999999998
No 202
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=26.26 E-value=87 Score=20.40 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=21.4
Q ss_pred hhCCCCEEEEcCccCccEE-E------ECCEEEEccC
Q psy10860 41 RQLDVDILISGHTHKFEAY-E------HENKFYINPG 70 (91)
Q Consensus 41 ~~~~~dvvi~GHtH~~~~~-~------~~~~~~iNPG 70 (91)
++.++|+|+.|.||.+... . ..++.+|+|-
T Consensus 172 ~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~ 208 (216)
T PF01177_consen 172 KEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSN 208 (216)
T ss_dssp HCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHH
T ss_pred ccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccH
Confidence 3789999999999998541 1 1256677654
No 203
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=25.92 E-value=1.5e+02 Score=20.72 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=8.0
Q ss_pred EEEEecCCCC
Q psy10860 18 RIGLCHGHDI 27 (91)
Q Consensus 18 ~i~~~Hg~~~ 27 (91)
..+++||+|.
T Consensus 5 ~~f~~hh~P~ 14 (271)
T cd07373 5 SAFLVPGSPL 14 (271)
T ss_pred EEEecCCCCc
Confidence 4689999885
No 204
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=25.91 E-value=84 Score=19.87 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.9
Q ss_pred HHHHHhhCCCCEEEEcCccC
Q psy10860 36 LALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHtH~ 55 (91)
+.+.+++.+++.|+.||.-.
T Consensus 68 l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 68 AAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred HHHHHHHCCCCEEEEeeccC
Confidence 45566778999999999874
No 205
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=25.86 E-value=39 Score=19.97 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=21.8
Q ss_pred CCHHHHHHHHhhCCCCE-EEEcCccCccEE-EECCEEEEccCCcC
Q psy10860 31 GDPEALALLQRQLDVDI-LISGHTHKFEAY-EHENKFYINPGSAT 73 (91)
Q Consensus 31 ~~~~~l~~~~~~~~~dv-vi~GHtH~~~~~-~~~~~~~iNPGS~~ 73 (91)
++.+++.++..+ ...+ .+.+-.-..... ....-++||||+-.
T Consensus 69 Ts~e~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~giviNP~~~~ 112 (124)
T PF07179_consen 69 TSWEELEKWYPD-ERPIIVVPFEDLLEMLLNNEGDGIVINPGTPS 112 (124)
T ss_pred CCHHHHHhhhcc-cCceecccHHHHHHHhhcCCCcEEEEECCCCc
Confidence 456777766642 2222 333333222222 22456889999864
No 206
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=25.38 E-value=85 Score=23.53 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+.+++.+++.|++|||-.
T Consensus 97 ~l~~~A~~~G~~~Ia~G~t~~ 117 (394)
T TIGR00032 97 KLVEAAKKEGANAVAHGCTGK 117 (394)
T ss_pred HHHHHHHHcCCCEEEECccCC
Confidence 355677889999999999865
No 207
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=24.84 E-value=48 Score=24.92 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=28.4
Q ss_pred CHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCcC
Q psy10860 32 DPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSAT 73 (91)
Q Consensus 32 ~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~ 73 (91)
+...+.+++++.++|+++ |++|--+.-..-++.++..|.--
T Consensus 361 D~~~l~~~i~~~~~dlii-g~s~~k~~A~~l~ip~ir~g~Pi 401 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLI-TNSHGRALAQRLALPLVRAGFPL 401 (432)
T ss_pred CHHHHHHHHhhcCCCEEE-ECcchHHHHHHcCCCEEEecCCc
Confidence 456777788888888877 66777554444577778777643
No 208
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.72 E-value=71 Score=21.72 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=16.9
Q ss_pred HHHHhhCCCCEEEEcCccCc
Q psy10860 37 ALLQRQLDVDILISGHTHKF 56 (91)
Q Consensus 37 ~~~~~~~~~dvvi~GHtH~~ 56 (91)
..++++.+++.++-||+=+.
T Consensus 74 ~~mLkd~G~~~viiGHSERR 93 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR 93 (205)
T ss_pred HHHHHHcCCCEEEECcccCC
Confidence 44667899999999999886
No 209
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=24.66 E-value=27 Score=20.89 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=17.8
Q ss_pred CEEEEccCCcCCCCCCCCCCCceEEEeeC
Q psy10860 63 NKFYINPGSATGAFNPLEPLNGRYANVKS 91 (91)
Q Consensus 63 ~~~~iNPGS~~~~~~~~~~~~a~Y~il~~ 91 (91)
-+.++|-|++|.--+-......+||+|++
T Consensus 8 ~VRY~~TGT~G~V~diK~ed~~~wv~LD~ 36 (91)
T PF09871_consen 8 YVRYINTGTVGKVVDIKEEDGETWVLLDS 36 (91)
T ss_pred EEEECCCCeEEEEEEEEEeCCCeEEEEcc
Confidence 35778999888753211122468888853
No 210
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=24.58 E-value=1.4e+02 Score=16.67 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=7.4
Q ss_pred HHHHhhCCCCEEEE
Q psy10860 37 ALLQRQLDVDILIS 50 (91)
Q Consensus 37 ~~~~~~~~~dvvi~ 50 (91)
.+++++.+++++.|
T Consensus 50 ~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 50 ARWARERGVPVIRF 63 (71)
T ss_pred HHHHHHCCCeeEEe
Confidence 34555555555543
No 211
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.53 E-value=48 Score=20.76 Aligned_cols=29 Identities=17% Similarity=0.009 Sum_probs=20.0
Q ss_pred EEEEcCccCccEEE----ECCEEEEccCCcCCC
Q psy10860 47 ILISGHTHKFEAYE----HENKFYINPGSATGA 75 (91)
Q Consensus 47 vvi~GHtH~~~~~~----~~~~~~iNPGS~~~~ 75 (91)
|+++||++...... ..+..++|-|--|..
T Consensus 2 i~~~g~s~~~~w~~~~~~~~~~~v~N~Gi~G~~ 34 (171)
T cd04502 2 ILFYGSSSIRLWDTLADDLAPLPVVNRGFGGST 34 (171)
T ss_pred EEEEcCchhcchhhHHHhCCCCceeecCcccch
Confidence 78888888864432 356778888876654
No 212
>KOG1625|consensus
Probab=24.34 E-value=64 Score=25.62 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=26.0
Q ss_pred CCCCEEEEcCccCccEEEECCEEEEccCCcCCCC
Q psy10860 43 LDVDILISGHTHKFEAYEHENKFYINPGSATGAF 76 (91)
Q Consensus 43 ~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~~ 76 (91)
.-+||+|-==-=+.+++.+++.++||||-+...-
T Consensus 534 ~~PdIlIlPSdLr~Fvk~V~~~V~iNpGr~aKg~ 567 (600)
T KOG1625|consen 534 STPDILILPSDLRHFVKDVNGCVVINPGRLAKGT 567 (600)
T ss_pred CCCcEEEechhhHHHHHhcCCeEEEcchhhccCc
Confidence 3578888765556666778999999999987664
No 213
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.31 E-value=91 Score=23.89 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHHHHhhCCCCEEEEcCc
Q psy10860 35 ALALLQRQLDVDILISGHT 53 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHt 53 (91)
.+.++.++.++|++|+|=.
T Consensus 67 ~i~~mv~k~~pDv~iaGPa 85 (431)
T TIGR01917 67 KVLEMIKGANPDIFIAGPA 85 (431)
T ss_pred HHHHHHHhcCCCEEEEcCc
Confidence 4556778899999999954
No 214
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=24.00 E-value=64 Score=19.74 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=9.5
Q ss_pred CCC-CEEEEcCccC
Q psy10860 43 LDV-DILISGHTHK 55 (91)
Q Consensus 43 ~~~-dvvi~GHtH~ 55 (91)
.++ .++|+|||.-
T Consensus 56 l~v~~ivV~gHt~C 69 (119)
T cd00382 56 LGVKHIIVCGHTDC 69 (119)
T ss_pred hCCCEEEEEccCCC
Confidence 344 6899999853
No 215
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=23.83 E-value=1.1e+02 Score=17.39 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHHHHHHhhCCCCEEEEcCccCccEE
Q psy10860 34 EALALLQRQLDVDILISGHTHKFEAY 59 (91)
Q Consensus 34 ~~l~~~~~~~~~dvvi~GHtH~~~~~ 59 (91)
..+.+++...++|++++|..-.....
T Consensus 53 ~~~~~~l~~~~v~~vi~~~iG~~~~~ 78 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGGIGPRALN 78 (103)
T ss_pred hHHHHHHHHcCCCEEEeCCCCcCHHH
Confidence 45566666789999999988765443
No 216
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=23.65 E-value=95 Score=23.78 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=15.3
Q ss_pred HHHHHHhhCCCCEEEEcCc
Q psy10860 35 ALALLQRQLDVDILISGHT 53 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHt 53 (91)
.+.++.++.++|++|+|=.
T Consensus 67 ~i~~mv~k~~pDv~iaGPa 85 (431)
T TIGR01918 67 RVLEMLKDKEPDIFIAGPA 85 (431)
T ss_pred HHHHHHHhcCCCEEEEcCc
Confidence 4556778899999999954
No 217
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=23.64 E-value=98 Score=17.46 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=13.3
Q ss_pred HHHHHhhCCCC--EEEEcCccCc
Q psy10860 36 LALLQRQLDVD--ILISGHTHKF 56 (91)
Q Consensus 36 l~~~~~~~~~d--vvi~GHtH~~ 56 (91)
+.+.++..+.. |.|.|||-..
T Consensus 20 l~~~l~~~~~~~~i~I~G~td~~ 42 (97)
T PF00691_consen 20 LAKILKYPGNKDQIEIEGHTDST 42 (97)
T ss_dssp HHHHHHSTTSTTEEEEEEEEESS
T ss_pred HHHHHhCcCCCCeEEEEEEEcCc
Confidence 33444433455 9999998763
No 218
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=23.63 E-value=73 Score=22.31 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=26.4
Q ss_pred HHHHHhhCCCCEEEEcCccCccEEEE---------------CCEEEEccCCcC
Q psy10860 36 LALLQRQLDVDILISGHTHKFEAYEH---------------ENKFYINPGSAT 73 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHtH~~~~~~~---------------~~~~~iNPGS~~ 73 (91)
..+.+++.+++.++-||+=+...... +=+.++..|..-
T Consensus 78 S~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~ 130 (250)
T PRK00042 78 SAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETL 130 (250)
T ss_pred CHHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence 34466789999999999988654321 225677877753
No 219
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=23.53 E-value=1.7e+02 Score=20.49 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=15.1
Q ss_pred CCCCceEEEEECCEEEEEecCCCC
Q psy10860 4 TSYPEKKVVTVGQFRIGLCHGHDI 27 (91)
Q Consensus 4 ~~lP~~~~~~~~g~~i~~~Hg~~~ 27 (91)
.++|.... .++.+++++|+...
T Consensus 101 r~lPl~~~--~~~~~~l~vHAGi~ 122 (257)
T cd07422 101 RHQPLLHR--DPELGILMVHAGIP 122 (257)
T ss_pred HhCCCEEE--ECCccEEEEccCCC
Confidence 35675443 45678999998764
No 220
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=23.32 E-value=1e+02 Score=21.13 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=12.1
Q ss_pred HHHHhhCCCCEEEEcCc
Q psy10860 37 ALLQRQLDVDILISGHT 53 (91)
Q Consensus 37 ~~~~~~~~~dvvi~GHt 53 (91)
.+.++..+-++.+.||+
T Consensus 76 ~~~~~~~~~~i~v~GHS 92 (224)
T PF11187_consen 76 KKIAKKYPGKIYVTGHS 92 (224)
T ss_pred HHHHHhCCCCEEEEEec
Confidence 34445556679999997
No 221
>PRK14567 triosephosphate isomerase; Provisional
Probab=22.87 E-value=84 Score=22.19 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=25.7
Q ss_pred HHHHhhCCCCEEEEcCccCccEEEE---------------CCEEEEccCCcC
Q psy10860 37 ALLQRQLDVDILISGHTHKFEAYEH---------------ENKFYINPGSAT 73 (91)
Q Consensus 37 ~~~~~~~~~dvvi~GHtH~~~~~~~---------------~~~~~iNPGS~~ 73 (91)
...+++.+++.++-||+=+-..... +=+.++..|..-
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~ 129 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESL 129 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence 3456789999999999988544321 225678888753
No 222
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=22.61 E-value=79 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.8
Q ss_pred HHHHhhCCCCEEEEcCccCccE
Q psy10860 37 ALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 37 ~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
.+.+++.+++.++-||+=+...
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~ 98 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQY 98 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCc
Confidence 4466789999999999988643
No 223
>PLN02561 triosephosphate isomerase
Probab=22.57 E-value=79 Score=22.27 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=25.4
Q ss_pred HHHHhhCCCCEEEEcCccCccEEEE---------------CCEEEEccCCc
Q psy10860 37 ALLQRQLDVDILISGHTHKFEAYEH---------------ENKFYINPGSA 72 (91)
Q Consensus 37 ~~~~~~~~~dvvi~GHtH~~~~~~~---------------~~~~~iNPGS~ 72 (91)
.+.+++.+++.++-||+=+...... +=+.++..|..
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~ 131 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGET 131 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCC
Confidence 3456789999999999988644321 22577888875
No 224
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=22.55 E-value=3.1e+02 Score=19.92 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=10.1
Q ss_pred HHHHhhCCCCEEEEcC
Q psy10860 37 ALLQRQLDVDILISGH 52 (91)
Q Consensus 37 ~~~~~~~~~dvvi~GH 52 (91)
.++..+..+|+++.|-
T Consensus 194 l~~i~e~~P~v~ii~G 209 (304)
T COG2248 194 LEFILEKRPDVLIIGG 209 (304)
T ss_pred HHHHHhcCCCEEEecC
Confidence 3455566788777663
No 225
>PRK13820 argininosuccinate synthase; Provisional
Probab=22.53 E-value=1.1e+02 Score=23.08 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=16.2
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+.+++.++++|..|||=.
T Consensus 100 ~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 100 KIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHHHcCCCEEEECCCCC
Confidence 345567788999999999743
No 226
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=22.52 E-value=1.2e+02 Score=18.40 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.7
Q ss_pred HhhCCCCEEEEcC
Q psy10860 40 QRQLDVDILISGH 52 (91)
Q Consensus 40 ~~~~~~dvvi~GH 52 (91)
+...++++++.||
T Consensus 182 ~~~~~~~~ii~gH 194 (194)
T PF00753_consen 182 LEALDPEVIIPGH 194 (194)
T ss_dssp HHTSTTSEEEESS
T ss_pred HHCCCCCEEEeCc
Confidence 4467899999998
No 227
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.42 E-value=1.1e+02 Score=22.79 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=26.4
Q ss_pred CHHHHHHHHhhCCCCEEEEcCccCccEEEECCEEEEccCCc
Q psy10860 32 DPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 72 (91)
Q Consensus 32 ~~~~l~~~~~~~~~dvvi~GHtH~~~~~~~~~~~~iNPGS~ 72 (91)
+..++.+.+++.++|+++.++ +.-+.-+.-++.++.-|+.
T Consensus 357 d~~e~~~~i~~~~pDliig~~-~~~~~a~k~giP~~~~~~~ 396 (421)
T cd01976 357 THYELEEFVKRLKPDLIGSGI-KEKYVFQKMGIPFRQMHSW 396 (421)
T ss_pred CHHHHHHHHHHhCCCEEEecC-cchhhhhhcCCCeEeCCcc
Confidence 456777777888999998554 5444444556666666644
No 228
>PRK14566 triosephosphate isomerase; Provisional
Probab=21.79 E-value=85 Score=22.27 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHHHHhhCCCCEEEEcCccCccE
Q psy10860 36 LALLQRQLDVDILISGHTHKFEA 58 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHtH~~~~ 58 (91)
...++++.+++.++-||+=+...
T Consensus 87 S~~mL~d~G~~~viiGHSERR~~ 109 (260)
T PRK14566 87 SGQMLKDAGCRYVIIGHSERRRM 109 (260)
T ss_pred CHHHHHHcCCCEEEECcccccCC
Confidence 34466789999999999988644
No 229
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=21.74 E-value=1.1e+02 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHHhhCCCCEEEEcCccC
Q psy10860 35 ALALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~ 55 (91)
.+.+.+++.++|.|..||+=+
T Consensus 99 ~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 99 MLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred HHHHHHHHcCCCEEEECCccc
Confidence 355677789999999999864
No 230
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=21.43 E-value=1.1e+02 Score=22.87 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=17.0
Q ss_pred HHHHHHhhCCCCEEEEcCccCc
Q psy10860 35 ALALLQRQLDVDILISGHTHKF 56 (91)
Q Consensus 35 ~l~~~~~~~~~dvvi~GHtH~~ 56 (91)
.+.+++++.+++.++.||+=-+
T Consensus 275 ~a~~iA~~~g~~~IaTGhslgq 296 (381)
T PRK08384 275 HADRIAKEFGAKGIVMGDSLGQ 296 (381)
T ss_pred HHHHHHHHcCCCEEEEcccchh
Confidence 4456778899999999996443
No 231
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=21.37 E-value=41 Score=21.10 Aligned_cols=14 Identities=43% Similarity=0.812 Sum_probs=9.4
Q ss_pred hCCC-CEEEEcCccC
Q psy10860 42 QLDV-DILISGHTHK 55 (91)
Q Consensus 42 ~~~~-dvvi~GHtH~ 55 (91)
..++ .++|+|||.-
T Consensus 51 ~l~v~~IiV~gHt~C 65 (153)
T PF00484_consen 51 HLGVKEIIVCGHTDC 65 (153)
T ss_dssp TST-SEEEEEEETT-
T ss_pred cCCCCEEEEEcCCCc
Confidence 3444 6899999975
No 232
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=21.18 E-value=1.1e+02 Score=21.30 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=13.9
Q ss_pred HHHHHhhCC---CCEEEEcCccC
Q psy10860 36 LALLQRQLD---VDILISGHTHK 55 (91)
Q Consensus 36 l~~~~~~~~---~dvvi~GHtH~ 55 (91)
+...++... ..+.|.|||=.
T Consensus 148 ia~~l~~~~~~~~~i~I~GhTD~ 170 (252)
T PRK06667 148 IASFIGFLDLAGRNFRIEGHTDN 170 (252)
T ss_pred HHHHHHhCCCCCceEEEEEeCCC
Confidence 344445555 77999999975
No 233
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=21.02 E-value=1.8e+02 Score=20.09 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEecCCCCCCCC---CHHHHHHHHhhC-CCC--EEEEcCc
Q psy10860 19 IGLCHGHDIIPWG---DPEALALLQRQL-DVD--ILISGHT 53 (91)
Q Consensus 19 i~~~Hg~~~~~~~---~~~~l~~~~~~~-~~d--vvi~GHt 53 (91)
+++.||++..+.. ..+.++++.++. ++| |||+.|-
T Consensus 3 ~fi~HG~p~~~~~~~~~~~~l~~~~~~l~~p~~IiviSaHw 43 (253)
T cd07363 3 LFISHGSPMLALEDNPATAFLRELGKELPKPKAILVISAHW 43 (253)
T ss_pred EEeCCCCcccccCCChHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 6899999865421 224555555433 566 4455553
No 234
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=21.01 E-value=1.1e+02 Score=19.87 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=15.4
Q ss_pred HHHHHHhhC-CCCEEEEcCccCcc
Q psy10860 35 ALALLQRQL-DVDILISGHTHKFE 57 (91)
Q Consensus 35 ~l~~~~~~~-~~dvvi~GHtH~~~ 57 (91)
.+.++++.. ...++|-|||=.-.
T Consensus 104 ~~a~~L~~~p~~~i~V~GHTD~~G 127 (190)
T COG2885 104 ELAKYLKKNPITRILVEGHTDSTG 127 (190)
T ss_pred HHHHHHHhCCCcEEEEEecCCCCC
Confidence 344455444 57899999997643
No 235
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=20.81 E-value=1.8e+02 Score=20.85 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=17.7
Q ss_pred CCCceEEEEECCEEEEEecCCCCCCCCCHHHH
Q psy10860 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEAL 36 (91)
Q Consensus 5 ~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l 36 (91)
++|..+. .++.+++++|+... |..+.+..
T Consensus 104 ~lPl~i~--~~~~~~~lVHAGi~-P~w~l~~a 132 (279)
T TIGR00668 104 RQPLLQH--DEEKKLVMAHAGIT-PQWDLQTA 132 (279)
T ss_pred cCCcEEE--eCCCCEEEEecCCC-CCCcHHHH
Confidence 4676544 35667999998875 33344333
No 236
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=20.79 E-value=1.1e+02 Score=19.07 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=9.1
Q ss_pred CEEEEccCCcCCCCC
Q psy10860 63 NKFYINPGSATGAFN 77 (91)
Q Consensus 63 ~~~~iNPGS~~~~~~ 77 (91)
++.++-.|-+-.|-+
T Consensus 96 rv~~l~~~~v~~PSD 110 (125)
T PF10137_consen 96 RVFILVKGGVELPSD 110 (125)
T ss_pred eEEEEEcCCccCCcc
Confidence 456666776666643
No 237
>PTZ00333 triosephosphate isomerase; Provisional
Probab=20.58 E-value=92 Score=21.90 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=18.1
Q ss_pred HHHHhhCCCCEEEEcCccCccEE
Q psy10860 37 ALLQRQLDVDILISGHTHKFEAY 59 (91)
Q Consensus 37 ~~~~~~~~~dvvi~GHtH~~~~~ 59 (91)
...+++.+++.++-||+=+....
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f 104 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYF 104 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcC
Confidence 34567899999999999886443
No 238
>PRK15492 triosephosphate isomerase; Provisional
Probab=20.35 E-value=1e+02 Score=21.76 Aligned_cols=37 Identities=11% Similarity=0.359 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCEEEEcCccCccEEEE---------------CCEEEEccCCc
Q psy10860 36 LALLQRQLDVDILISGHTHKFEAYEH---------------ENKFYINPGSA 72 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHtH~~~~~~~---------------~~~~~iNPGS~ 72 (91)
....+++.+++.++-||+=+...... +=+.++..|..
T Consensus 86 Sa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~ 137 (260)
T PRK15492 86 SPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGET 137 (260)
T ss_pred CHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 34466789999999999988654321 22567888874
No 239
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=20.18 E-value=1.1e+02 Score=22.24 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.6
Q ss_pred HHHHHhhCCCCEEEEcCccC
Q psy10860 36 LALLQRQLDVDILISGHTHK 55 (91)
Q Consensus 36 l~~~~~~~~~dvvi~GHtH~ 55 (91)
+.+.+++.++|.|+.||.=.
T Consensus 108 l~~~A~~~g~~~IATGH~a~ 127 (346)
T PRK00143 108 FLEYARELGADYIATGHYAR 127 (346)
T ss_pred HHHHHHHCCCCEEEeeeecc
Confidence 44567788999999999554
No 240
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=20.03 E-value=77 Score=25.23 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=26.2
Q ss_pred CCEEEEcCccCccEEEECCEEEEccCCcCCC
Q psy10860 45 VDILISGHTHKFEAYEHENKFYINPGSATGA 75 (91)
Q Consensus 45 ~dvvi~GHtH~~~~~~~~~~~~iNPGS~~~~ 75 (91)
.|+-+||-||......++...+++-.|++..
T Consensus 554 ~d~elCGGTHV~nTgeIG~fkI~s~~s~g~G 584 (594)
T PRK01584 554 FSKEVCGGPHVENTGELGTFKIQKEQSSSSG 584 (594)
T ss_pred eeeeCCCCCCCCCcccCceEEEEecccccCC
Confidence 4678999999998888888899988887754
No 241
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=20.03 E-value=1.2e+02 Score=19.81 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=19.4
Q ss_pred EEEecCCCCCC-----CCC-------HHHHHHHHh--hCCCCEEEEcCc
Q psy10860 19 IGLCHGHDIIP-----WGD-------PEALALLQR--QLDVDILISGHT 53 (91)
Q Consensus 19 i~~~Hg~~~~~-----~~~-------~~~l~~~~~--~~~~dvvi~GHt 53 (91)
-+++||.+-.. +-+ ...+..+.+ ..+.|+.+||.-
T Consensus 52 hivsHG~~G~l~LG~~~l~~~~L~~~~~~l~~w~~~L~~~~~IlLyGC~ 100 (165)
T PF14252_consen 52 HIVSHGSPGALQLGNTWLSAETLEQYADELAQWGQALADDGDILLYGCN 100 (165)
T ss_pred EEEcCCCcceEEECCceeCHHHHHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 37889987422 111 223333333 346789999953
Done!