RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10860
(91 letters)
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich,
structural genomics, structural genomics consortium,
SGC, protein transport; 2.20A {Cryptosporidium parvum}
SCOP: d.159.1.7
Length = 215
Score = 114 bits (286), Expect = 1e-33
Identities = 40/78 (51%), Positives = 56/78 (71%)
Query: 4 TSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHEN 63
+PE VV +G+F+IGL HG+ ++PW DP +L QR+LD DIL++GHTHK +E
Sbjct: 101 GVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFEKNG 160
Query: 64 KFYINPGSATGAFNPLEP 81
K ++NPG+ATGAF+ L P
Sbjct: 161 KLFLNPGTATGAFSALTP 178
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase,
manganese, protein transport; 2.00A {Mus musculus} SCOP:
d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A
2r17_A
Length = 192
Score = 104 bits (261), Expect = 3e-30
Identities = 61/76 (80%), Positives = 68/76 (89%)
Query: 3 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE 62
+YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHE
Sbjct: 76 NLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHE 135
Query: 63 NKFYINPGSATGAFNP 78
NKFYINPGSATGA+N
Sbjct: 136 NKFYINPGSATGAYNA 151
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase
COG0622); structural genomics, predicted
phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus
pneumoniae} SCOP: d.159.1.7
Length = 176
Score = 91.6 bits (228), Expect = 3e-25
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 6 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF 65
YPE+ V +G +I HGH + + L ++ + I + GH H A+
Sbjct: 67 YPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKIL 126
Query: 66 YINPGSAT 73
++NPGS +
Sbjct: 127 FLNPGSIS 134
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue,
structural genomics, PSI- 2, protein structure
initiative; NMR {Thermotoga maritima}
Length = 178
Score = 90.4 bits (225), Expect = 9e-25
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 3 GTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHE 62
P KV+ V IG+CHG PW + L +++ GHTH+ E
Sbjct: 89 KEHLPFSKVLLVEGVTIGMCHGWGA-PWDL-KDRLLKVFNEKPQVILFGHTHEPEDTVKA 146
Query: 63 NKFYINPGSAT 73
++NPGS
Sbjct: 147 GVRFLNPGSLA 157
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease,
structural genomics, BSGC struc funded by NIH; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB:
1s3m_A 1s3n_A 2ahd_A
Length = 190
Score = 67.4 bits (165), Expect = 8e-16
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 6 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF 65
+ V + + + HGH L + + D++I GHTH+ E ++
Sbjct: 105 IDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVL 158
Query: 66 YINPGSATG 74
INPG G
Sbjct: 159 VINPGECCG 167
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 65.1 bits (159), Expect = 8e-15
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 6 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF 65
+ V + + R+ L HGH PE L L D+L+ GHTH A + F
Sbjct: 112 TAPWQQVLLEKQRLFLTHGHLF----GPENLPALN---QNDVLVYGHTHLPVAEQRGEIF 164
Query: 66 YINPGSATG 74
+ NPGS +
Sbjct: 165 HFNPGSVSI 173
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 43.1 bits (101), Expect = 2e-06
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 5 SYPEKKVVTVGQFRIGLCHGH-------DIIPWGDPEALALLQRQLDVDILISGHTHK-F 56
+ P + G +G+ H ++I G E L DI + GH H+
Sbjct: 118 NQPLQIHRQFGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIHQQL 177
Query: 57 EAYEHENKFYINPGSATGAFNPLEPLNG----RYA 87
Y + +NPGS F L +Y
Sbjct: 178 LRYGTGGQLIVNPGSIGQPFFLDAQLRKDLRAQYM 212
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 34.2 bits (77), Expect = 0.003
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 7 PEKKVVTVGQFRIGLCHGHDI-IPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF 65
+++V+ + C I + W L++L+ V I+GH H +
Sbjct: 219 KQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSSGA 278
Query: 66 -YINPGSAT 73
+I
Sbjct: 279 QHITLEGVI 287
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 32.8 bits (74), Expect = 0.007
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWG--------DPEALALLQRQLDVDILISGHTHKF 56
P V +G + +G I P+ A+++ D ++LI
Sbjct: 120 DLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYP 179
Query: 57 EAYEHENKFYINPGSA 72
+ PGS
Sbjct: 180 VDAMTRYGRVVCPGSV 195
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A
phosphatase, motor protein, structur protein, membrane
protein; 1.70A {Plasmodium falciparum 3D7}
Length = 342
Score = 31.8 bits (71), Expect = 0.015
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 34 EALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEPLNGRYA 87
L L + +VD+ ISGH + E E + +I GS + +
Sbjct: 215 YYLLPLLKDAEVDLYISGHDNNMEVIEDNDMAHITCGSG-SMSQGKSGMKNSKS 267
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 31.0 bits (70), Expect = 0.030
Identities = 9/57 (15%), Positives = 16/57 (28%)
Query: 22 CHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNP 78
+ D AL + R DV +++GH H + +
Sbjct: 189 LDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVGIPVSVASATCYTQDL 245
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 30.2 bits (68), Expect = 0.053
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 22 CHGHDIIPWGDPEAL-ALLQRQLDVDILISGHTHKFEAYEHEN-KFYINPGSA 72
D I + L AL++R + + GH H ++ PG+
Sbjct: 164 NAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTV 216
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 30.4 bits (69), Expect = 0.054
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 19 IGLCH-GHDIIPWGDPEA-----LALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 72
I H GH A +A + +++ GH+ ENK ++
Sbjct: 188 IAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPG 247
Query: 73 T 73
T
Sbjct: 248 T 248
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics,
PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus
subtilis subsp}
Length = 341
Score = 30.1 bits (68), Expect = 0.077
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 19 IGLCH-GHDI---IPWGDPEALALLQRQLDVDILISGHTHKF 56
I L H G + + L + +D +ISGH H
Sbjct: 212 IALAHTGIEKQAQSSGAENAVFDLATKTKGIDAIISGHQHGL 253
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 29.7 bits (67), Expect = 0.086
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 19 IGLCHG---HDIIPWGDPEALALLQRQLDVDILISGHTHKF 56
+ + H D ++ L + VD ++ GH H
Sbjct: 206 VVVAHSGLSADPYQAMAENSVYYLSQVPGVDAIMFGHAHAV 246
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 29.2 bits (66), Expect = 0.15
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAY 59
G G + + + + +DILI+GH H
Sbjct: 196 GVPARQSSMGGTDVRRALDKDIQTASQVKGLDILITGHAHVGTPE 240
>3qfk_A Uncharacterized protein; structural genomics, center for structural
genomics of infec diseases, csgid, phosphoesterase,
hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus
subsp}
Length = 527
Score = 28.9 bits (65), Expect = 0.21
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 19 IGLCHG----------HDIIPWGDPEALALLQRQLD-VDILISGHTHKFEAYEHENKFYI 67
+ HG + G+ E A+L+ +DI I+GH H+ A + I
Sbjct: 203 VVCYHGGFEKDLESGTPTEVLTGENEGYAMLEAFSKDIDIFITGHQHRQIAERFKQTAVI 262
Query: 68 NPGS 71
PG+
Sbjct: 263 QPGT 266
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 28.2 bits (62), Expect = 0.38
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 13/51 (25%)
Query: 15 GQFRIGLCHGHDIIPWGDP-----------EALALLQRQLDVDILISGHTH 54
G I + H H++ D + + L +D +SGH H
Sbjct: 235 GAKLIPVLH-HNLTDHNDVIQKGYTINYNQQVIDALTE-GAMDFSLSGHIH 283
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN
nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A
{Haemophilus influenzae} PDB: 3zu0_A*
Length = 579
Score = 27.6 bits (61), Expect = 0.54
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 31 GDPEALALLQRQLDVDILISGHTHKF 56
G + + + Q+ D+D++++G +H
Sbjct: 205 GSEKNIEIAQKVNDIDVIVTGDSHYL 230
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 26.9 bits (60), Expect = 0.82
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 9/43 (20%)
Query: 21 LCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHEN 63
+ H + D + L + + D +I E E
Sbjct: 59 VAHRSYVGNMMDKDFLWSVVEREKPDAII---------PEIEA 92
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 26.9 bits (60), Expect = 0.92
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 31 GDPEALALLQRQLDVDILISGHTHKF 56
G E L L +R + V +++ GH+H
Sbjct: 217 GYGEDLKLARRLVGVQVIVGGHSHTL 242
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 27.0 bits (60), Expect = 0.95
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 26 DIIPWGDPEALALLQRQLDVDILISGHTHKFEAYE 60
+ GD E L R ++I A
Sbjct: 357 PSVRVGDLEDLEHAARAGQAQLVIGNSHALASARR 391
>2rdm_A Response regulator receiver protein; structural genomics, unknown
function, PSI-2, protein struct initiative; HET: MSE;
1.76A {Sinorhizobium medicae}
Length = 132
Score = 26.4 bits (59), Expect = 1.1
Identities = 3/18 (16%), Positives = 11/18 (61%)
Query: 33 PEALALLQRQLDVDILIS 50
+A+ +L+ +D +++
Sbjct: 39 AKAIEMLKSGAAIDGVVT 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.2
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 4 TSYPEKKVVTVGQFRIGLCHGHD--IIPWGDPEALALLQRQL 43
+ P K V I L +G ++ G P++L L L
Sbjct: 358 SHLPAGKQV-----EISLVNGAKNLVVS-GPPQSLYGLNLTL 393
Score = 24.2 bits (52), Expect = 9.1
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 23 HGHDIIPW-GDPEALALLQRQLDVDILIS 50
G +I+ W +P D D L+S
Sbjct: 211 QGLNILEWLENPS------NTPDKDYLLS 233
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 26.0 bits (58), Expect = 1.8
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 9/42 (21%)
Query: 22 CHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHEN 63
H +I D +AL + ++ E E
Sbjct: 52 AHRSHVINMLDGDALRRVVELEKPHYIV---------PEIEA 84
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 25.8 bits (56), Expect = 1.8
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 18 RIGLCHGHDIIPWG----DPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSAT 73
+ HG P + AL D + GHTH +
Sbjct: 112 DWTVVHGSPRHPIWEYIYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEALSNVAPHHP 171
Query: 74 GAFNPLEPLNGRY 86
L+ +GRY
Sbjct: 172 NDGEVLDVSSGRY 184
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 25.6 bits (56), Expect = 3.1
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 31 GDPEALALLQRQLDVDILISGHTHKF--EAYEHENKFYINPGS 71
G AL +R +D+++SGHTH + + + +
Sbjct: 265 GMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSA 307
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm;
2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A
3o61_A
Length = 191
Score = 25.3 bits (56), Expect = 3.2
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 11/42 (26%)
Query: 7 PEKKVVTVGQFRIGLCHGHDIIPW-----------GDPEALA 37
+K VV + QFR+ + +PE
Sbjct: 56 KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCI 97
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid
phosphatase metalloenzyme, uteroferrin, hydrolase; HET:
NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A*
2bq8_X 1qfc_A* 1qhw_A*
Length = 313
Score = 25.4 bits (55), Expect = 3.2
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 39 LQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLEP 81
L V + GH H + + EN A +P +
Sbjct: 208 LLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMDPSKK 250
>3dsa_A D-ribose high-affinity transport system; D-ribose transport system,
RBSD, decamer, csgid, transport protein, structural
genomics; 2.45A {Salmonella typhimurium} PDB: 3e7n_A
Length = 142
Score = 24.9 bits (54), Expect = 3.4
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 32 DPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA-----TGAFNPLEPLNGRY 86
+P+ L L+ G+T K HE +F + +G +P Y
Sbjct: 80 NPQLHETLLTHLEQLQQHQGNTIKISYTTHE-QFKKLTADSQAVIRSGECSP-------Y 131
Query: 87 ANV 89
ANV
Sbjct: 132 ANV 134
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR
initiative, PSI-2, NEW YORK SGX research center for
structu genomics, nysgxrc; 1.90A {Candida albicans}
SCOP: d.114.1.1 d.159.1.2
Length = 557
Score = 25.4 bits (55), Expect = 3.5
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 23 HGHDIIPWGDPEALALLQRQLDVDILI-SGHTHKFEAYEHENKFYI 67
H+ + L Q D I GH+H + ++
Sbjct: 209 ISHNWGEFYQ-VHQYLRQFFPDTIIQYFGGHSHIRDFTVFDSLSTG 253
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 24.6 bits (54), Expect = 4.7
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 9/34 (26%)
Query: 33 PEALALLQRQLDVDILISGHTHKF------EAYE 60
P ++L+ +D+ +I + E +
Sbjct: 351 PRVISLMASGMDMTKII---SKTVSMEEIPEYIK 381
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain,
PSI-2, protein structure initiative; 2.03A
{Desulfovibrio vulgaris str}
Length = 174
Score = 24.6 bits (54), Expect = 5.2
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 7/28 (25%)
Query: 33 PEALALLQR-------QLDVDILISGHT 53
P A +L + + +I I G T
Sbjct: 64 PGADRVLATLKDLFIRRREQNINIKGFT 91
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 24.5 bits (53), Expect = 6.5
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 41 RQLDVDILISGHTHKFEAYE 60
+ DI + H F+
Sbjct: 204 ESMRCDIFLGSHAGMFDLKN 223
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein
structure initi midwest center for structural genomics,
PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP:
d.159.1.8
Length = 195
Score = 24.3 bits (52), Expect = 6.6
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 6 YPEKKVVTVGQFRIGLCH-----GHDIIPWGDPEALALLQRQLDVDILISGHTH 54
Y K++ RI L H E + + + + D+LI GH H
Sbjct: 96 YDFYKIIEHKGKRILLSHYPAKDPITERYPDRQEMVREIYFKENCDLLIHGHVH 149
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 24.3 bits (53), Expect = 7.0
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 7 PEKKVVTVG---QFRIGLCHGHDIIPWGDPEAL-ALLQRQLDVDILISGHTH 54
P+++V+ G + ++G D+ + P+ L L +L + +I GH
Sbjct: 157 PDEQVLYGGCILKEKLGNLSFADVKAY--PQTLERLKAMKLPIKTVIGGHDS 206
>1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium
camemberti} SCOP: c.69.1.17
Length = 279
Score = 24.1 bits (52), Expect = 7.5
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 16/45 (35%)
Query: 1 MKGTSYPEKKVVTVGQFRIG----------------LCHGHDIIP 29
++G YP K+ R+G H +D +P
Sbjct: 158 LRGKGYPSAKLYAYASPRVGNAALAKYITAQGNNFRFTHTNDPVP 202
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics,
protein structure initiative; 2.45A {Rhodopirellula
baltica}
Length = 151
Score = 24.1 bits (53), Expect = 7.5
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 17 FRIGLCHGHDIIPWGDP-EALALLQRQLDVDILIS 50
+ L ++ EALA +++ +++
Sbjct: 20 LKRNLSFDFEVTTCESGPEALACIKKSDPFSVIMV 54
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium
tuberculosis, Fe cluster, metal-binding, electron
transfer, transport; 1.6A {Mycobacterium smegmatis}
Length = 105
Score = 23.9 bits (52), Expect = 7.6
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 59 YEHENKFYINP 69
YE YI+P
Sbjct: 26 YEGARMLYIHP 36
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 24.3 bits (52), Expect = 8.1
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 34 EALALLQRQLDVDILISGHTHKFEAYEHENK-FYINPGSA 72
+ + + L+ ++ I GH + +E +NPG
Sbjct: 202 AVVNTIIKSLNPEVAIVGHVG--KGHELVGNTIVVNPGEF 239
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 24.2 bits (53), Expect = 8.1
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 24 GHDIIPWG--DPEALALLQRQLDVD 46
+ PW D LALL + L +
Sbjct: 225 KTYLNPWKKIDSAPLALLHKILVEN 249
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 24.1 bits (52), Expect = 8.2
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 3/39 (7%)
Query: 41 RQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPL 79
R L D+L++ H G+
Sbjct: 214 RALPCDVLLTPHPGASNWDYAAGA---RAGAKALTCKAY 249
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function
initiative, isomerase; 2.00A {Pectobacterium carotovorum
subsp}
Length = 426
Score = 24.1 bits (53), Expect = 8.4
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 26 DIIPWGDPEALALLQRQLDVDI 47
D P + L+++ I
Sbjct: 261 DPTPAENQACFRLIRQHTVTPI 282
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 24.2 bits (53), Expect = 8.5
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 24 GHDIIPWGDPEALALLQRQLDVDILISGHTH 54
G + GD + + VD+LI +T+
Sbjct: 365 GSKVKVEGDFFDVHQWIKNEGVDLLI-SNTY 394
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex,
metallophosphatase, exonuclease, endonuclease, RAD50,
NBS1, hydrolase; 3.00A {Homo sapiens}
Length = 431
Score = 24.1 bits (51), Expect = 8.6
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 15 GQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK---FYI-NPG 70
F + + H + G + +D++I GH H+ + +N+ FYI PG
Sbjct: 229 SWFNLFVIH-QNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIAPTKNEQQLFYISQPG 287
Query: 71 S 71
S
Sbjct: 288 S 288
>3luf_A Two-component system response regulator/ggdef domain protein;
structural genomics, ASA_2441, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB:
3mf4_A*
Length = 259
Score = 23.8 bits (52), Expect = 9.1
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 34 EALALLQRQLDVDILI 49
EALA L++ + +++
Sbjct: 159 EALATLEQHPAIRLVL 174
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 24.1 bits (52), Expect = 9.2
Identities = 4/37 (10%), Positives = 8/37 (21%), Gaps = 5/37 (13%)
Query: 23 HGHDIIPWGDPEALALLQ---RQLDVDILI--SGHTH 54
H + + L ++ I S
Sbjct: 325 EFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMD 361
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET:
YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A*
2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A*
2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A*
2x8i_A* 2xey_A* 2xez_A* ...
Length = 276
Score = 24.1 bits (53), Expect = 9.4
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 24 GHDIIPWG--DPEALALLQRQLDVD 46
+ PW D LALL + L +
Sbjct: 225 KTYLNPWKKIDSAPLALLHKILVEN 249
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga
maritima}
Length = 380
Score = 24.0 bits (53), Expect = 9.5
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 11/43 (25%)
Query: 21 LCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHEN 63
+ + + D E + L + DV + Y+ E+
Sbjct: 41 VADEQIVAGFFDSERIEDLVKGSDV---TT--------YDLEH 72
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 24.1 bits (52), Expect = 9.5
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 51 GHTHKFEAYEHENKFYINPGS 71
GH HK + GS
Sbjct: 205 GHIHKRILERFNDGILAYSGS 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.432
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,521,843
Number of extensions: 82982
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 71
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)