RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10860
(91 letters)
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29
{Cryptosporidium parvum [TaxId: 5807]}
Length = 193
Score = 77.8 bits (191), Expect = 3e-20
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK 64
+PE VV +G+F+IGL HG+ ++PW DP +L QR+LD DIL++GHTHK +E K
Sbjct: 80 VFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFEKNGK 139
Query: 65 FYINPGSATGAFNPLEP 81
++NPG+ATGAF+ L P
Sbjct: 140 LFLNPGTATGAFSALTP 156
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 182
Score = 75.2 bits (184), Expect = 3e-19
Identities = 63/76 (82%), Positives = 69/76 (90%)
Query: 6 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF 65
YPE+KVVTVGQF+IGL HGH +IPWGD +LALLQRQ DVDILISGHTHKFEA+EHENKF
Sbjct: 69 YPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKF 128
Query: 66 YINPGSATGAFNPLEP 81
YINPGSATGA+N LE
Sbjct: 129 YINPGSATGAYNALET 144
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 173
Score = 60.2 bits (145), Expect = 1e-13
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 6 YPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF 65
YPE+ V +G +I HGH + + L ++ + I + GH H A+
Sbjct: 64 YPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKIL 123
Query: 66 YINPGSATGAFN 77
++NPGS +
Sbjct: 124 FLNPGSISQPRG 135
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 58.7 bits (141), Expect = 6e-13
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 1 MKGTSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYE 60
+ + V + + + HGH L + + D++I GHTH+ E
Sbjct: 75 NEENIIDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEE 128
Query: 61 HENKFYINPGSATGAFNP 78
++ INPG G
Sbjct: 129 VDDVLVINPGECCGYLTG 146
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 44.9 bits (105), Expect = 1e-07
Identities = 15/61 (24%), Positives = 21/61 (34%)
Query: 21 LCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNPLE 80
L + G L D+L+ GHTH A + F+ NPGS +
Sbjct: 96 LEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNP 155
Query: 81 P 81
Sbjct: 156 A 156
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 34.7 bits (78), Expect = 5e-04
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 17 FRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENK-FYINPGSA 72
+G I LAL++R + + GH H ++ PG+
Sbjct: 160 LPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTV 216
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 33.2 bits (74), Expect = 0.002
Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 22 CHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 72
H + +A L + + +++ + + + PG
Sbjct: 158 MPYHKGLNEQGSHEVAHLIKTHNPLLVLVAGKGQKH-EMLGASWVVVPGDL 207
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
Length = 320
Score = 32.4 bits (72), Expect = 0.004
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 22 CHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKF-YINPGSAT 73
+ W L++L+ V I+GH H + +I
Sbjct: 233 AADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSSGAQHITLEGVI 285
>d3buxb1 a.39.1.7 (B:178-263) Cbl {Human (Homo sapiens) [TaxId:
9606]}
Length = 86
Score = 29.4 bits (66), Expect = 0.016
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 4 TSYPEKKVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFE 57
++ EK +V FR L H I EA+AL + +D+ + + FE
Sbjct: 15 KAFGEKTIVPWKSFRQALHEVHPISS--GLEAMAL---KSTIDLTCNDYISVFE 63
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 29.1 bits (64), Expect = 0.059
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 18 RIGLCHGHDIIPWGDPEALA----LLQRQLDVDILISGHTHKFEAYEHENKFYINPGSAT 73
G H + W +++ D I GHT + + N+ YI+ G+
Sbjct: 148 EFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVF 207
Query: 74 G 74
Sbjct: 208 C 208
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 28.9 bits (63), Expect = 0.059
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 25 HDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSA 72
+ + + + L+ ++ I GH K N +NPG
Sbjct: 190 PEDPKHHGSAVVNTIIKSLNPEVAIVGHVGKGHE-LVGNTIVVNPGEF 236
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 302
Score = 28.2 bits (61), Expect = 0.11
Identities = 10/57 (17%), Positives = 15/57 (26%)
Query: 22 CHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFNP 78
+ L L V + GH H + + EN A +P
Sbjct: 189 SIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMDP 245
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 27.8 bits (60), Expect = 0.15
Identities = 9/52 (17%), Positives = 12/52 (23%)
Query: 20 GLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEHENKFYINPGS 71
D + L GH HK + + PGS
Sbjct: 174 QGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIHKRYETSYSGSPVVYPGS 225
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase,
catalytic domain {Kidney bean (Phaseolus vulgaris)
[TaxId: 3885]}
Length = 312
Score = 27.6 bits (60), Expect = 0.23
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 10 KVVTVGQFRIGLCHGHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEH--ENKFYI 67
+V + + H + + VD++ +GH H +E E + I
Sbjct: 161 LIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKI 220
Query: 68 NPGSATGAFNPLEPL 82
G T + P+
Sbjct: 221 TNGLCTPVKDQSAPV 235
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 25.9 bits (56), Expect = 0.75
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 24 GHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYE 60
G + GD + + VD+LIS KF A E
Sbjct: 364 GSKVKVEGDFFDVHQWIKNEGVDLLISNTYGKFIARE 400
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 337
Score = 24.9 bits (53), Expect = 1.8
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 36 LALLQRQLDVDILISGHTHKFEAYEHENKFYINPGSATGAFN 77
+A + +++ GH+ ENK ++ T
Sbjct: 211 MARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKP 252
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 24.3 bits (51), Expect = 2.9
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 5 SYPEKKVVTVGQFRIGLCHGHDIIPWGDPEAL-ALLQRQLDVDILISGH 52
+ +V+ G +DII + L R +D+L+ H
Sbjct: 151 TENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVGRIDLLVFPH 199
>gi|115385463|ref|XP_001209278.1|(7-278:285) hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624]
gi|114187725|gb|EAU29425.1| hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624] E=1e-100
s/c=1.35 id=66% cov=100%
Length = 272
Score = 24.2 bits (52), Expect = 3.1
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 16/45 (35%)
Query: 1 MKGTSYPEKKVVTVGQFRIG----------------LCHGHDIIP 29
++ YP R+ H +D +P
Sbjct: 158 LRTKGYPSATFYAFASPRVANPALARFITDQGRNYRFTHTNDPVP 202
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex
aeolicus [TaxId: 63363]}
Length = 188
Score = 23.6 bits (50), Expect = 3.9
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 5 SYPEKKVVTVGQFRIGLCH-----GHDIIPWGDPEALALLQRQLDVDILISGHTHK 55
Y K++ RI L H E + + + + D+LI GH H
Sbjct: 95 IYDFYKIIEHKGKRILLSHYPAKDPITERYPDRQEMVREIYFKENCDLLIHGHVHW 150
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 23.2 bits (49), Expect = 6.7
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 19 IGLCHGHDIIPWGDPEALALLQRQLDVDILI-SGHTHKFEAYEHENK-FYINPGS 71
+G L Q D I GH+H + ++ + G
Sbjct: 200 VGHTPISHNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIRDFTVFDSLSTGLQSGR 254
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 23.2 bits (49), Expect = 7.3
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 24 GHDIIPWGDPEALALLQRQLDVDILISGHTHKFEAYEH 61
G +I + + ++ +L D+ +G KF +
Sbjct: 436 GTILIDDMNHHDMEVVLEKLKPDMFFAGIKEKFVIQKG 473
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 23.0 bits (48), Expect = 7.3
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 41 RQLDVDILISGHTHKFEAYEH 61
+ DI + H F+
Sbjct: 203 ESMRCDIFLGSHAGMFDLKNK 223
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.139 0.432
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,080
Number of extensions: 15442
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 24
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)