BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10861
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|1JWH|D Chain D, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|2R6M|A Chain A, Crystal Structure Of Rat Ck2-Beta Subunit
pdb|2R6M|B Chain B, Crystal Structure Of Rat Ck2-Beta Subunit
pdb|4DGL|A Chain A, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
pdb|4DGL|B Chain B, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
Length = 215
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/282 (54%), Positives = 163/282 (57%), Gaps = 97/282 (34%)
Query: 150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMIXXXXXXX 209
MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMI
Sbjct: 1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 60
Query: 210 XXXXXXXQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPML 269
QSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QPML
Sbjct: 61 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 120
Query: 270 PIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCES 329
PI L D P ++ M++ Y CP+
Sbjct: 121 PIG--LSDIPGEA---------------------------MVKLY-------CPK----- 139
Query: 330 QPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV 389
CMDVYTPKSSRHHH
Sbjct: 140 -----------------------CMDVYTPKSSRHHH----------------------- 153
Query: 390 YTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
TDGAYFGTGFPHMLFMVHPEYRPKRP NQFVP
Sbjct: 154 ----------TDGAYFGTGFPHMLFMVHPEYRPKRPANQFVP 185
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 2/81 (2%)
Query: 418 PEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKY 477
P YR + ++ + ++ELEDNPNQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKY
Sbjct: 44 PHYR--QALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKY 101
Query: 478 QTGDFGHCPRVYCESQPMLPI 498
Q GDFG+CPRVYCE+QPMLPI
Sbjct: 102 QQGDFGYCPRVYCENQPMLPI 122
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 52/71 (73%), Gaps = 5/71 (7%)
Query: 63 VRAVSYNTGKRRDP---QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQD 119
V +S+ G R + ++DEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP +E ++D
Sbjct: 7 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE--LED 64
Query: 120 KFNLTGLNEQV 130
N + L EQ
Sbjct: 65 NPNQSDLIEQA 75
>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory
Subunit (Ck2beta; Mutant 1-193)
pdb|3EED|B Chain B, Crystal Structure Of Human Protein Kinase Ck2 Regulatory
Subunit (Ck2beta; Mutant 1-193)
Length = 193
Score = 274 bits (701), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 154/282 (54%), Positives = 163/282 (57%), Gaps = 97/282 (34%)
Query: 150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMIXXXXXXX 209
MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMI
Sbjct: 1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 60
Query: 210 XXXXXXXQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPML 269
QSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QPML
Sbjct: 61 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 120
Query: 270 PIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCES 329
PI L D P ++ M++ Y CP+
Sbjct: 121 PIG--LSDIPGEA---------------------------MVKLY-------CPK----- 139
Query: 330 QPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV 389
CMDVYTPKSSRHHH
Sbjct: 140 -----------------------CMDVYTPKSSRHHH----------------------- 153
Query: 390 YTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
TDGAYFGTGFPHMLFMVHPEYRPKRP NQFVP
Sbjct: 154 ----------TDGAYFGTGFPHMLFMVHPEYRPKRPANQFVP 185
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 2/81 (2%)
Query: 418 PEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKY 477
P YR + ++ + ++ELEDNPNQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKY
Sbjct: 44 PHYR--QALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKY 101
Query: 478 QTGDFGHCPRVYCESQPMLPI 498
Q GDFG+CPRVYCE+QPMLPI
Sbjct: 102 QQGDFGYCPRVYCENQPMLPI 122
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 52/71 (73%), Gaps = 5/71 (7%)
Query: 63 VRAVSYNTGKRRDP---QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQD 119
V +S+ G R + ++DEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP +E ++D
Sbjct: 7 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE--LED 64
Query: 120 KFNLTGLNEQV 130
N + L EQ
Sbjct: 65 NPNQSDLIEQA 75
>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|B Chain B, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|D Chain D, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|E Chain E, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|G Chain G, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|H Chain H, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|J Chain J, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|K Chain K, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
Length = 184
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/280 (53%), Positives = 161/280 (57%), Gaps = 98/280 (35%)
Query: 145 PGSLKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMIXX 204
PG ++MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMI
Sbjct: 3 PG-IQMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILD 61
Query: 205 XXXXXXXXXXXXQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCE 264
QSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE
Sbjct: 62 LEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCE 121
Query: 265 SQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPR 324
+QPMLPI L D P ++ M++ Y CP+
Sbjct: 122 NQPMLPIG--LSDIPGEA---------------------------MVKLY-------CPK 145
Query: 325 VYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCP 384
CMDVYTPKSSRHHH
Sbjct: 146 ----------------------------CMDVYTPKSSRHHH------------------ 159
Query: 385 KCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 424
TDGAYFGTGFPHMLFMVHPEYRPKR
Sbjct: 160 ---------------TDGAYFGTGFPHMLFMVHPEYRPKR 184
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 2/81 (2%)
Query: 418 PEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKY 477
P YR + ++ + ++ELEDNPNQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKY
Sbjct: 50 PHYR--QALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKY 107
Query: 478 QTGDFGHCPRVYCESQPMLPI 498
Q GDFG+CPRVYCE+QPMLPI
Sbjct: 108 QQGDFGYCPRVYCENQPMLPI 128
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 52/71 (73%), Gaps = 5/71 (7%)
Query: 63 VRAVSYNTGKRRDP---QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQD 119
V +S+ G R + ++DEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP +E ++D
Sbjct: 13 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE--LED 70
Query: 120 KFNLTGLNEQV 130
N + L EQ
Sbjct: 71 NPNQSDLIEQA 81
>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
pdb|1QF8|B Chain B, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
Length = 182
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/278 (51%), Positives = 150/278 (53%), Gaps = 97/278 (34%)
Query: 151 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMIXXXXXXXX 210
SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALD I
Sbjct: 2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEE 61
Query: 211 XXXXXXQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLP 270
QSDLIEQA+E LYGLIHARYILTNRGI Q +EKYQ GDFG+CPRVYCE+QP LP
Sbjct: 62 LEDNPNQSDLIEQAAEXLYGLIHARYILTNRGIAQXLEKYQQGDFGYCPRVYCENQPXLP 121
Query: 271 IDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQ 330
I SD+ +A LY CP+
Sbjct: 122 I--------GLSDIPGEAXVKLY----------------------------CPK------ 139
Query: 331 PMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVY 390
C DVYTPKSSRHHH
Sbjct: 140 ----------------------CXDVYTPKSSRHHH------------------------ 153
Query: 391 TPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQ 428
TDGAYFGTGFPH LF VHPEYRPKRP NQ
Sbjct: 154 ---------TDGAYFGTGFPHXLFXVHPEYRPKRPANQ 182
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
Query: 418 PEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKY 477
P YR + ++ + ++ELEDNPNQSDLIEQA+E LYGLIHARYILTNRGI Q +EKY
Sbjct: 44 PHYR--QALDXILDLEPDEELEDNPNQSDLIEQAAEXLYGLIHARYILTNRGIAQXLEKY 101
Query: 478 QTGDFGHCPRVYCESQPMLPI 498
Q GDFG+CPRVYCE+QP LPI
Sbjct: 102 QQGDFGYCPRVYCENQPXLPI 122
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 63 VRAVSYNTGKRRDP---QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQD 119
V +S+ G R + ++DEDYIQDKFNLTGLNEQVPHYRQALD ILDLEP +E ++D
Sbjct: 7 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEE--LED 64
Query: 120 KFNLTGLNEQV 130
N + L EQ
Sbjct: 65 NPNQSDLIEQA 75
>pdb|3I0U|A Chain A, Structure Of The Type Iii EffectorPHOSPHOTHREONINE LYASE
OSPF FROM Shigella Flexneri
pdb|3I0U|B Chain B, Structure Of The Type Iii EffectorPHOSPHOTHREONINE LYASE
OSPF FROM Shigella Flexneri
Length = 218
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 73 RRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLN 127
R +PQ D++ DKF+++ EQVP Q L +L ED DK+ +T +N
Sbjct: 68 RENPQSKGDFVGDKFHISIAREQVPLAFQILSGLL----FSEDSPIDKWKITDMN 118
>pdb|2Z8M|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8M|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 71 GKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQV 130
+R PQ + DKF+++ L + VP QAL +L ED DK+ +T + + V
Sbjct: 89 ARRESPQSQGKFAGDKFHISVLRDMVPQAFQALSGLL----FSEDSPVDKWKVTDMEKVV 144
Query: 131 PHYRQAL 137
R +L
Sbjct: 145 QQARVSL 151
>pdb|2Q8Y|A Chain A, Structural Insight Into The Enzymatic Mechanism Of The
Phophothreonine Lyase
pdb|2Z8P|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 71 GKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQV 130
+R PQ + DKF+++ L + VP QAL +L ED DK+ +T + + V
Sbjct: 89 ARRESPQSQGKFAGDKFHISVLRDMVPQAFQALSGLL----FSEDSPVDKWAVTDMEKVV 144
Query: 131 PHYRQAL 137
R +L
Sbjct: 145 QQARVSL 151
>pdb|2P1W|A Chain A, Structure Of The Phosphothreonine Lyase Spvc, The Effector
Protein From Salmonella
Length = 250
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 71 GKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQV 130
+R PQ + DKF+++ L + VP QAL +L ED DK+ +T + V
Sbjct: 98 ARRESPQSQGKFAGDKFHISVLRDXVPQAFQALSGLL----FSEDSPVDKWKVTDXEKVV 153
Query: 131 PHYRQALDMILDL 143
R +L L
Sbjct: 154 QQARVSLGAQFTL 166
>pdb|2Z8O|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8O|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 71 GKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQV 130
+R PQ + DKF+++ L + VP QAL +L ED DK+ +T + V
Sbjct: 89 ARRESPQSQGKFAGDKFHISVLRDXVPQAFQALSGLL----FSEDSPVDKWKVTDXEKVV 144
Query: 131 PHYRQALDMILDL 143
R +L L
Sbjct: 145 QQARVSLGAQFTL 157
>pdb|3BO6|A Chain A, Structure Of The Chromobacterium Violaceum Vira (Spvc)
Phosphothreonine Lyase Effector Protein
pdb|3BO6|B Chain B, Structure Of The Chromobacterium Violaceum Vira (Spvc)
Phosphothreonine Lyase Effector Protein
Length = 220
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 73 RRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDL--EPVDEDYIQD 119
R +PQ D+ DKF+++ EQVP QAL +L P+D+ + D
Sbjct: 70 RENPQCKGDFAGDKFHISVQREQVPQAFQALSGLLFSVDSPIDKWKVTD 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,613,441
Number of Sequences: 62578
Number of extensions: 672077
Number of successful extensions: 1372
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 46
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)