Query psy10861
Match_columns 498
No_of_seqs 317 out of 563
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 20:20:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgl_A Casein kinase II subuni 100.0 4.5E-79 1.5E-83 585.0 12.6 196 150-442 1-196 (215)
2 1qf8_A Casein kinase II; casei 100.0 4E-72 1.4E-76 526.3 12.6 180 151-427 2-181 (182)
3 4dgl_A Casein kinase II subuni 100.0 1.3E-45 4.4E-50 353.8 10.2 162 78-379 5-166 (215)
4 1qf8_A Casein kinase II; casei 100.0 2.6E-45 8.9E-50 344.7 8.5 164 78-381 5-168 (182)
5 4esj_A Type-2 restriction enzy 92.0 0.026 8.9E-07 55.6 -0.3 63 320-418 35-105 (257)
6 4esj_A Type-2 restriction enzy 71.4 1.3 4.4E-05 43.7 1.4 39 347-396 34-72 (257)
7 2fiy_A Protein FDHE homolog; F 62.7 4.2 0.00014 40.9 3.1 52 317-389 180-231 (309)
8 1vk6_A NADH pyrophosphatase; 1 51.6 4.7 0.00016 39.2 1.3 31 319-359 107-137 (269)
9 3h0g_I DNA-directed RNA polyme 45.0 49 0.0017 28.3 6.5 61 321-387 6-79 (113)
10 3j20_Y 30S ribosomal protein S 38.9 16 0.00055 27.5 2.2 32 343-390 15-47 (50)
11 1dx8_A Rubredoxin; electron tr 30.2 41 0.0014 26.9 3.4 42 344-387 4-47 (70)
12 2kxe_A DNA polymerase II small 30.0 29 0.001 28.2 2.5 28 293-320 9-36 (75)
13 3b23_C Variegin; hydrolase-hyd 27.1 18 0.00061 25.4 0.6 19 100-120 13-31 (32)
14 2kxe_A DNA polymerase II small 25.6 42 0.0014 27.3 2.7 30 454-483 7-36 (75)
15 2jrp_A Putative cytoplasmic pr 25.6 41 0.0014 27.9 2.7 12 347-358 18-29 (81)
16 1pft_A TFIIB, PFTFIIBN; N-term 25.4 1.2E+02 0.0041 21.8 5.0 12 347-358 24-35 (50)
17 2dkz_A Hypothetical protein LO 24.6 14 0.00047 31.1 -0.3 20 109-128 50-69 (84)
18 2jny_A Uncharacterized BCR; st 24.6 38 0.0013 26.9 2.3 31 318-358 9-39 (67)
19 2jne_A Hypothetical protein YF 24.0 33 0.0011 29.6 1.9 37 320-388 33-69 (101)
20 1twf_I B12.6, DNA-directed RNA 23.3 1.2E+02 0.004 26.2 5.3 33 320-358 5-37 (122)
21 3m7n_A Putative uncharacterize 23.0 37 0.0013 31.0 2.2 29 318-358 139-167 (179)
22 2apo_B Ribosome biogenesis pro 21.0 63 0.0021 25.4 2.8 8 380-387 18-25 (60)
23 1e8j_A Rubredoxin; iron-sulfur 20.8 1.1E+02 0.0039 22.9 4.1 39 347-387 3-43 (52)
24 3h0g_I DNA-directed RNA polyme 20.7 52 0.0018 28.1 2.5 32 348-390 5-36 (113)
25 2con_A RUH-035 protein, NIN on 20.1 86 0.0029 25.8 3.5 39 315-358 28-66 (79)
26 2js4_A UPF0434 protein BB2007; 20.0 53 0.0018 26.3 2.2 30 319-358 8-37 (70)
No 1
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=100.00 E-value=4.5e-79 Score=584.97 Aligned_cols=196 Identities=89% Similarity=1.499 Sum_probs=159.8
Q ss_pred CCCcccchhHHhhhcCCCCccccccChhhhccccccCCcccccccHHHHHHHHcCCCCCCcccCCCCChhhHHHHHHhhh
Q psy10861 150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLY 229 (498)
Q Consensus 150 ~ssse~~sWI~wF~~~~gne~f~eVDeDfI~D~FNL~GL~~~vp~y~~ALdlIld~~~~~~~e~~~~~~~lIe~sAe~LY 229 (498)
|||+++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||++|+|.+++++.+++.
T Consensus 1 ms~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~-------------- 66 (215)
T 4dgl_A 1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNP-------------- 66 (215)
T ss_dssp -------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CT--------------
T ss_pred CCCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccc--------------
Confidence 567788999999999999999999999999999999999999999999999999987654433332
Q ss_pred hhhhhhhhhccchhhhHHhhhccCCCCCCCccccCCCCCcCCCcccCCCCCCchhHHHHHHHHhhhhhcceeeChhhHHH
Q psy10861 230 GLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQ 309 (498)
Q Consensus 230 GLIHARYIlT~rGL~~M~EKY~~gdFG~CPRv~C~~q~vLPVG~~Lsd~p~~~d~i~~~a~~LYgliHaRyi~T~~Gl~~ 309 (498)
.+.++++.+|++||||||||||+|++||++
T Consensus 67 --------------------------------------------------~~~~~ie~~A~~LYGLIHARYIlT~~Gl~~ 96 (215)
T 4dgl_A 67 --------------------------------------------------NQSDLIEQAAEMLYGLIHARYILTNRGIAQ 96 (215)
T ss_dssp --------------------------------------------------THHHHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred --------------------------------------------------hhHHHHHHHHHHHhhhhhHhheecHHHHHH
Confidence 234455555666666666666777777777
Q ss_pred HHHhhcCCCccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCccc
Q psy10861 310 MIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV 389 (498)
Q Consensus 310 m~~Ky~~~~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (498)
|++||++++||+||||+|++|||||+|+||+||+++||||||+|+|||+|+
T Consensus 97 M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~----------------------------- 147 (215)
T 4dgl_A 97 MLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPK----------------------------- 147 (215)
T ss_dssp HHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCS-----------------------------
T ss_pred HHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCC-----------------------------
Confidence 777777777788888888999999999999999999999999999999954
Q ss_pred ccCCCCCCCCccccccCCchhhHHHhhcCCCCCCCCCCCcCCCcCCCccCCCC
Q psy10861 390 YTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNP 442 (498)
Q Consensus 390 ~~p~~~~~~~iDGa~fG~sFph~f~~~~p~~~p~~~~~~~~p~I~GFKLhdnp 442 (498)
++++.+||||||||||||||||+||+++|+++.++|+|||||||||+.+
T Consensus 148 ----s~r~~~iDGAyFGtsFph~f~~~~p~l~p~~~~~~yvPrifGFkih~~a 196 (215)
T 4dgl_A 148 ----SSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMA 196 (215)
T ss_dssp ----STTSTTSBGGGTTTTHHHHHHHHCGGGCCCSCSCCCCCEETTEEECTHH
T ss_pred ----cccccccccceecCcchHHHHHHcccccCCCCCCcccCeEeEEEecHHh
Confidence 4567789999999999999999999999999999999999999999875
No 2
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=100.00 E-value=4e-72 Score=526.34 Aligned_cols=180 Identities=94% Similarity=1.597 Sum_probs=144.9
Q ss_pred CCcccchhHHhhhcCCCCccccccChhhhccccccCCcccccccHHHHHHHHcCCCCCCcccCCCCChhhHHHHHHhhhh
Q psy10861 151 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYG 230 (498)
Q Consensus 151 ssse~~sWI~wF~~~~gne~f~eVDeDfI~D~FNL~GL~~~vp~y~~ALdlIld~~~~~~~e~~~~~~~lIe~sAe~LYG 230 (498)
+++++.+||+|||+++||+||||||+|||+|+|||+||+++||+|++||++|+|.+.+++.+++.+
T Consensus 2 ~~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~-------------- 67 (182)
T 1qf8_A 2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN-------------- 67 (182)
T ss_dssp -----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CH--------------
T ss_pred CCCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchh--------------
Confidence 556778999999999999999999999999999999999999999999999999876543322221
Q ss_pred hhhhhhhhccchhhhHHhhhccCCCCCCCccccCCCCCcCCCcccCCCCCCchhHHHHHHHHhhhhhcceeeChhhHHHH
Q psy10861 231 LIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQM 310 (498)
Q Consensus 231 LIHARYIlT~rGL~~M~EKY~~gdFG~CPRv~C~~q~vLPVG~~Lsd~p~~~d~i~~~a~~LYgliHaRyi~T~~Gl~~m 310 (498)
+.+.++.+|++||||||||||+|++||++|
T Consensus 68 --------------------------------------------------~~~~ie~~a~~LYGLIHaRyIlT~~Gl~~M 97 (182)
T 1qf8_A 68 --------------------------------------------------QSDLIEQAAEMLYGLIHARYILTNRGIAQM 97 (182)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred --------------------------------------------------hhHHHHHHHHHHhchhhhhhcccHHHHHHH
Confidence 234455556666666666667777777777
Q ss_pred HHhhcCCCccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCcccc
Q psy10861 311 IEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVY 390 (498)
Q Consensus 311 ~~Ky~~~~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (498)
++||++++||+||||+|++|||||+|+||+||+++||||||+|+|||+|+
T Consensus 98 ~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~------------------------------ 147 (182)
T 1qf8_A 98 LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPK------------------------------ 147 (182)
T ss_dssp HHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCS------------------------------
T ss_pred HHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCC------------------------------
Confidence 77777777888888888999999999999999999999999999999954
Q ss_pred cCCCCCCCCccccccCCchhhHHHhhcCCCCCCCCCC
Q psy10861 391 TPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVN 427 (498)
Q Consensus 391 ~p~~~~~~~iDGa~fG~sFph~f~~~~p~~~p~~~~~ 427 (498)
++++.+||||||||||||||||+||+++|+++.+
T Consensus 148 ---s~~~~~iDGAyFGtsFph~f~~~~p~l~p~~~~~ 181 (182)
T 1qf8_A 148 ---SSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181 (182)
T ss_dssp ---SGGGTTSBGGGTCSSHHHHHHHHCGGGSCSCC--
T ss_pred ---cccccccccceecCchHHHHHHHcccccCCCCCC
Confidence 4566789999999999999999999999987643
No 3
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=100.00 E-value=1.3e-45 Score=353.79 Aligned_cols=162 Identities=64% Similarity=1.019 Sum_probs=135.7
Q ss_pred CchhhhhhcccccCCCCcccchHHHhhhccccccCChhhhhcccCccCccccCCChHHHHHHHhcCCCCCCCCCCcccch
Q psy10861 78 IDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVS 157 (498)
Q Consensus 78 ~ded~i~d~fnl~gl~~~v~~~~~al~~i~~l~EVdedfIeD~FNLtGL~~~Vp~Y~eALdmILD~e~~d~~~ssse~~s 157 (498)
.+..||.|+.++.| |++ |||||+|||+|+||||||+++||+|++||+||||++++++.+++++
T Consensus 5 ~~~sWI~wFc~~~g-nef-------------fceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~--- 67 (215)
T 4dgl_A 5 EEVSWISWFCGLRG-NEF-------------FCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN--- 67 (215)
T ss_dssp ---CHHHHHHTSTT-CTT-------------CCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTT---
T ss_pred ccCcHHHHHhCCCC-CeE-------------EEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccch---
Confidence 35689999999999 545 9999999999999999999999999999999999987543111000
Q ss_pred hHHhhhcCCCCccccccChhhhccccccCCcccccccHHHHHHHHcCCCCCCcccCCCCChhhHHHHHHhhhhhhhhhhh
Q psy10861 158 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYI 237 (498)
Q Consensus 158 WI~wF~~~~gne~f~eVDeDfI~D~FNL~GL~~~vp~y~~ALdlIld~~~~~~~e~~~~~~~lIe~sAe~LYGLIHARYI 237 (498)
.. ++|+++|++||||||||||
T Consensus 68 ----------------------------------------------------~~-------~~ie~~A~~LYGLIHARYI 88 (215)
T 4dgl_A 68 ----------------------------------------------------QS-------DLIEQAAEMLYGLIHARYI 88 (215)
T ss_dssp ----------------------------------------------------HH-------HHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------------------------------------hH-------HHHHHHHHHHhhhhhHhhe
Confidence 00 3468899999999999999
Q ss_pred hccchhhhHHhhhccCCCCCCCccccCCCCCcCCCcccCCCCCCchhHHHHHHHHhhhhhcceeeChhhHHHHHHhhcCC
Q psy10861 238 LTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTG 317 (498)
Q Consensus 238 lT~rGL~~M~EKY~~gdFG~CPRv~C~~q~vLPVG~~Lsd~p~~~d~i~~~a~~LYgliHaRyi~T~~Gl~~m~~Ky~~~ 317 (498)
+|++||++|+|||++|+||+||||+|++|+||||| |+|+|+++. ++||
T Consensus 89 lT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvG--lSD~pg~~~------VKly------------------------ 136 (215)
T 4dgl_A 89 LTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIG--LSDIPGEAM------VKLY------------------------ 136 (215)
T ss_dssp TSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEE--SCSSTTSCB------EEEE------------------------
T ss_pred ecHHHHHHHHHHHhcCCCCcCCccccCCCceeccc--cCCCCCccc------eeEe------------------------
Confidence 99999999999999999999999999999999999 999999866 4678
Q ss_pred CccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCcccc
Q psy10861 318 DFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMV 379 (498)
Q Consensus 318 ~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~ 379 (498)
||| |+ ++|=|+.. + |+++|||+|||+|+++
T Consensus 137 ----CP~--C~------------------DvY~P~s~-----r---~~~iDGAyFGtsFph~ 166 (215)
T 4dgl_A 137 ----CPK--CM------------------DVYTPKSS-----R---HHHTDGAYFGTGFPHM 166 (215)
T ss_dssp ----CTT--TC------------------CEECCSST-----T---STTSBGGGTTTTHHHH
T ss_pred ----CCC--cc------------------cccCCCcc-----c---ccccccceecCcchHH
Confidence 999 99 99999862 2 4579999999999997
No 4
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=100.00 E-value=2.6e-45 Score=344.66 Aligned_cols=164 Identities=63% Similarity=0.987 Sum_probs=138.0
Q ss_pred CchhhhhhcccccCCCCcccchHHHhhhccccccCChhhhhcccCccCccccCCChHHHHHHHhcCCCCCCCCCCcccch
Q psy10861 78 IDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVS 157 (498)
Q Consensus 78 ~ded~i~d~fnl~gl~~~v~~~~~al~~i~~l~EVdedfIeD~FNLtGL~~~Vp~Y~eALdmILD~e~~d~~~ssse~~s 157 (498)
.++.||.|++++.| |++ |||||+|||+|+||||||+++||+|++||+||||.+++++++++.+
T Consensus 5 ~~~sWI~wF~~~~g-nef-------------fceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~--- 67 (182)
T 1qf8_A 5 EEVSWISWFCGLRG-NEF-------------FCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN--- 67 (182)
T ss_dssp --CCHHHHHHHSTT-CTT-------------CCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CH---
T ss_pred ccCcHHHHHhCCCC-CeE-------------EEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchh---
Confidence 35579999999999 544 9999999999999999999999999999999999987543111000
Q ss_pred hHHhhhcCCCCccccccChhhhccccccCCcccccccHHHHHHHHcCCCCCCcccCCCCChhhHHHHHHhhhhhhhhhhh
Q psy10861 158 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYI 237 (498)
Q Consensus 158 WI~wF~~~~gne~f~eVDeDfI~D~FNL~GL~~~vp~y~~ALdlIld~~~~~~~e~~~~~~~lIe~sAe~LYGLIHARYI 237 (498)
+ .+ .++++|++||||||||||
T Consensus 68 --------------------------------------~--~~-------------------~ie~~a~~LYGLIHaRyI 88 (182)
T 1qf8_A 68 --------------------------------------Q--SD-------------------LIEQAAEMLYGLIHARYI 88 (182)
T ss_dssp --------------------------------------H--HH-------------------HHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------------h--hH-------------------HHHHHHHHHhchhhhhhc
Confidence 0 00 157789999999999999
Q ss_pred hccchhhhHHhhhccCCCCCCCccccCCCCCcCCCcccCCCCCCchhHHHHHHHHhhhhhcceeeChhhHHHHHHhhcCC
Q psy10861 238 LTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTG 317 (498)
Q Consensus 238 lT~rGL~~M~EKY~~gdFG~CPRv~C~~q~vLPVG~~Lsd~p~~~d~i~~~a~~LYgliHaRyi~T~~Gl~~m~~Ky~~~ 317 (498)
+|++||++|+|||++|+||+||||+|++|+||||| |||+|+++. ++||
T Consensus 89 lT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvG--lSd~pg~~~------VKly------------------------ 136 (182)
T 1qf8_A 89 LTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIG--LSDIPGEAM------VKLY------------------------ 136 (182)
T ss_dssp TSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEEC--SCSSTTSCB------CEEE------------------------
T ss_pred ccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCc--cCCCCCCCc------eEEE------------------------
Confidence 99999999999999999999999999999999999 999999866 4677
Q ss_pred CccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCcccccc
Q psy10861 318 DFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKS 381 (498)
Q Consensus 318 ~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~ 381 (498)
||| |+ +||=|+.. + |+++|||+|||+|+++..
T Consensus 137 ----CP~--C~------------------DvY~p~s~--~------~~~iDGAyFGtsFph~f~ 168 (182)
T 1qf8_A 137 ----CPK--CM------------------DVYTPKSS--R------HHHTDGAYFGTGFPHMLF 168 (182)
T ss_dssp ----CTT--TC------------------CEECCSSG--G------GTTSBGGGTCSSHHHHHH
T ss_pred ----CCC--cc------------------ceeCCCcc--c------ccccccceecCchHHHHH
Confidence 999 99 99999872 2 357999999999999843
No 5
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=91.96 E-value=0.026 Score=55.57 Aligned_cols=63 Identities=27% Similarity=0.585 Sum_probs=37.8
Q ss_pred cccCCcCCCCCCccccccCCCCCCccc-eEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCCCCCC
Q psy10861 320 GHCPRVYCESQPMLPIGLSDVPGEAMV-KSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSRHH 398 (498)
Q Consensus 320 G~CPRv~C~~~~~LP~G~sd~~~~~~v-klYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 398 (498)
.+||+ |+.-++--++ ....| +.|||.|.+-|.-||.+ |.. ...
T Consensus 35 ~yCPn--CG~~~l~~f~-----nN~PVaDF~C~~C~EeyELKSk~-----~~~------------------------~~~ 78 (257)
T 4esj_A 35 SYCPN--CGNNPLNHFE-----NNRPVADFYCNHCSEEFELKSKK-----GNF------------------------SST 78 (257)
T ss_dssp CCCTT--TCCSSCEEC---------CCCEEECTTTCCEEEEEEEE-----SSC------------------------CSE
T ss_pred CcCCC--CCChhhhhcc-----CCCcccccccCCcchhheecccc-----Ccc------------------------Ccc
Confidence 56998 8866644443 23344 68888888888755421 100 112
Q ss_pred CccccccC-------CchhhHHHhhcC
Q psy10861 399 HTDGAYFG-------TGFPHMLFMVHP 418 (498)
Q Consensus 399 ~iDGa~fG-------~sFph~f~~~~p 418 (498)
-.||||-- .+=|.+|||.|.
T Consensus 79 I~dGAY~Tmi~Ri~s~~NPnFffL~Y~ 105 (257)
T 4esj_A 79 INDGAYATMMKRVQADNNPNFFFLTYT 105 (257)
T ss_dssp EEEEEHHHHHHHHHTTCCCEEEEEEEC
T ss_pred ccCchHHHHHHHHhccCCCCEEEEEec
Confidence 45999863 356888999886
No 6
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=71.40 E-value=1.3 Score=43.74 Aligned_cols=39 Identities=31% Similarity=0.696 Sum_probs=24.8
Q ss_pred eEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCCCC
Q psy10861 347 KSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSR 396 (498)
Q Consensus 347 klYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 396 (498)
.+|||+|..... .+..+-.-+. ..||+.|.+-|..||.+
T Consensus 34 n~yCPnCG~~~l------~~f~nN~PVa-----DF~C~~C~EeyELKSk~ 72 (257)
T 4esj_A 34 QSYCPNCGNNPL------NHFENNRPVA-----DFYCNHCSEEFELKSKK 72 (257)
T ss_dssp HCCCTTTCCSSC------EEC----CCC-----EEECTTTCCEEEEEEEE
T ss_pred CCcCCCCCChhh------hhccCCCccc-----ccccCCcchhheecccc
Confidence 689999977543 0111111112 36999999999999754
No 7
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=62.66 E-value=4.2 Score=40.90 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=34.5
Q ss_pred CCccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCccc
Q psy10861 317 GDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV 389 (498)
Q Consensus 317 ~~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (498)
...|+||- |.+.|++-+=......++.-.++|.-|.--+ ..++..||.|++.
T Consensus 180 ~~~~~CPv--CGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W-------------------~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPA--CGSPPMAGMIRQGGKETGLRYLSCSLCACEW-------------------HYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTT--TCCCEEEEEEEC----CCEEEEEETTTCCEE-------------------ECCTTSCSSSCCC
T ss_pred ccCCCCCC--CCCcCceeEEeecCCCCCcEEEEeCCCCCEE-------------------eecCcCCcCCCCC
Confidence 44689999 9999976542221123455589999994444 4566789999853
No 8
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=51.56 E-value=4.7 Score=39.21 Aligned_cols=31 Identities=26% Similarity=0.662 Sum_probs=17.2
Q ss_pred ccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccC
Q psy10861 319 FGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTP 359 (498)
Q Consensus 319 FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p 359 (498)
+.+||+ | +.++.+ ..+..+.+||.|..++-|
T Consensus 107 ~~fC~~--C-G~~~~~-------~~~~~~~~C~~C~~~~yp 137 (269)
T 1vk6_A 107 HKYCGY--C-GHEMYP-------SKTEWAMLCSHCRERYYP 137 (269)
T ss_dssp TSBCTT--T-CCBEEE-------CSSSSCEEESSSSCEECC
T ss_pred CCcccc--C-CCcCcc-------CCCceeeeCCCCCCEecC
Confidence 345777 3 444433 344556677777665554
No 9
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=45.04 E-value=49 Score=28.26 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=33.4
Q ss_pred ccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCC-----C--C--cc----cCCCCCCCCccccccccCCCc
Q psy10861 321 HCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSS-----R--H--HH----TDGLSDVPGEAMVKSYCPKCM 387 (498)
Q Consensus 321 ~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~-----~--~--~~----~~g~~~~~~~~~~~~~~~~~~ 387 (498)
.||. |++. |.|-.- .+.....+.|+.|.-++...+. + + .. ++|..--++.+.....||+|+
T Consensus 6 FCp~--Cgn~-L~~~~~---~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~ 79 (113)
T 3h0g_I 6 YCIE--CNNM-LYPRED---KVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCH 79 (113)
T ss_dssp CCSS--SCCC-CEECCC---TTTCCCCEECSSSCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSC
T ss_pred eCcC--CCCE-eeEccc---CCCCeeEEECCCCCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCC
Confidence 4999 9955 333221 1235678999999765543221 0 0 11 112222344556667899995
No 10
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.85 E-value=16 Score=27.47 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=18.9
Q ss_pred CccceEecCCCcc-cccCCCCCCcccCCCCCCCCccccccccCCCcccc
Q psy10861 343 EAMVKSYCPKCMD-VYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVY 390 (498)
Q Consensus 343 ~~~vklYCP~C~d-vY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (498)
.....-|||+|.. ++. .+. .-..+|++|+-++
T Consensus 15 v~~~~k~CP~CG~~~fm--------------~~~--~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGVFM--------------ADH--GDRWACGKCGYTE 47 (50)
T ss_dssp EECSSEECSSSCSSCEE--------------EEC--SSEEECSSSCCEE
T ss_pred EEEecccCCCCCCceEE--------------ecC--CCeEECCCCCCEE
Confidence 4455789999943 111 111 1256999997554
No 11
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=30.22 E-value=41 Score=26.93 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=30.8
Q ss_pred ccceEecCCCcccccCCCCCCcccCCCCCCCCcccccc--ccCCCc
Q psy10861 344 AMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKS--YCPKCM 387 (498)
Q Consensus 344 ~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~ 387 (498)
++.+-.|+-|.-||.|..- ....|.--||.|..+.- .||-|.
T Consensus 4 ~m~~y~C~vCGyiYd~~~G--dp~~gi~pGT~f~~lPddw~CP~Cg 47 (70)
T 1dx8_A 4 DEGKYECEACGYIYEPEKG--DKFAGIPPGTPFVDLSDSFMCPACR 47 (70)
T ss_dssp CSSCEEETTTCCEECTTTC--CTTTTCCSSCCGGGSCTTCBCTTTC
T ss_pred CCceEEeCCCCEEEcCCCC--CcccCcCCCCchhhCCCCCcCCCCC
Confidence 3457789999999997431 22345667888888866 999997
No 12
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=30.00 E-value=29 Score=28.24 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=25.6
Q ss_pred hhhhhcceeeChhhHHHHHHhhcCCCcc
Q psy10861 293 YGLIHARYILTNRGIGQMIEKYQTGDFG 320 (498)
Q Consensus 293 YgliHaRyi~T~~Gl~~m~~Ky~~~~FG 320 (498)
=+|+-++|++||..--.+.+-|.+|+|-
T Consensus 9 k~L~~n~YLiTPsAYyLL~~~ykkg~Fs 36 (75)
T 2kxe_A 9 KGLMKNGYLITPSAYYLLVGHFNEGKFS 36 (75)
T ss_dssp HHHHTTTCEECHHHHHHHHHHHHTTSSC
T ss_pred HHHHHCCceeCchHHHHHHHHhhccccc
Confidence 3789999999999999999999999984
No 13
>3b23_C Variegin; hydrolase-hydrolase inhibitor complex; 2.40A {Amblyomma variegatum}
Probab=27.13 E-value=18 Score=25.40 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=14.4
Q ss_pred HHHhhhccccccCChhhhhcc
Q psy10861 100 RQALDMILDLEPVDEDYIQDK 120 (498)
Q Consensus 100 ~~al~~i~~l~EVdedfIeD~ 120 (498)
+|++-. ||.++++|||+|.
T Consensus 13 ~~~p~g--DFE~IP~~~~~~~ 31 (32)
T 3b23_C 13 KTAPPF--DFEAIPEEYLDDE 31 (32)
T ss_pred ccCCCC--ChhhCCHhhhccc
Confidence 444445 7999999999985
No 14
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=25.62 E-value=42 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=26.7
Q ss_pred HHhcccccceecchhhHHHHHHHHhCCccC
Q psy10861 454 MLYGLIHARYILTNRGIGQMIEKYQTGDFG 483 (498)
Q Consensus 454 ~LYGlIHaRyI~T~~Gl~~m~~Ky~~g~FG 483 (498)
..=+|+-++|.+||..--.+.+-|.+|+|-
T Consensus 7 lVk~L~~n~YLiTPsAYyLL~~~ykkg~Fs 36 (75)
T 2kxe_A 7 FVKGLMKNGYLITPSAYYLLVGHFNEGKFS 36 (75)
T ss_dssp HHHHHHTTTCEECHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHCCceeCchHHHHHHHHhhccccc
Confidence 345788999999999999999999999995
No 15
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.61 E-value=41 Score=27.92 Aligned_cols=12 Identities=17% Similarity=0.697 Sum_probs=9.1
Q ss_pred eEecCCCccccc
Q psy10861 347 KSYCPKCMDVYT 358 (498)
Q Consensus 347 klYCP~C~dvY~ 358 (498)
.-+|+.|+.-|.
T Consensus 18 ~~~C~~C~~~~~ 29 (81)
T 2jrp_A 18 TAHCETCAKDFS 29 (81)
T ss_dssp EEECTTTCCEEE
T ss_pred ceECccccccCC
Confidence 456999977776
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=25.37 E-value=1.2e+02 Score=21.84 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=8.2
Q ss_pred eEecCCCccccc
Q psy10861 347 KSYCPKCMDVYT 358 (498)
Q Consensus 347 klYCP~C~dvY~ 358 (498)
.+.|+.|.-+|.
T Consensus 24 elvC~~CG~v~~ 35 (50)
T 1pft_A 24 EIVCAKCGYVIE 35 (50)
T ss_dssp EEEESSSCCBCC
T ss_pred eEECcccCCccc
Confidence 567777766665
No 17
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.65 E-value=14 Score=31.09 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.3
Q ss_pred cccCChhhhhcccCccCccc
Q psy10861 109 LEPVDEDYIQDKFNLTGLNE 128 (498)
Q Consensus 109 l~EVdedfIeD~FNLtGL~~ 128 (498)
|++.|+|.+.++|+|+.|+.
T Consensus 50 L~~L~ee~L~edf~ls~Lq~ 69 (84)
T 2dkz_A 50 LVQLTEEILSEDFKLSKLQV 69 (84)
T ss_dssp HHHCCHHHHHHTSCCCHHHH
T ss_pred HHhCCHHHHHhhcCCCHHHH
Confidence 79999999999999999963
No 18
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.64 E-value=38 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=19.1
Q ss_pred CccccCCcCCCCCCccccccCCCCCCccceEecCCCccccc
Q psy10861 318 DFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYT 358 (498)
Q Consensus 318 ~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~ 358 (498)
+...||. |.+ ++-- .. ..=.|.||.|+-.|-
T Consensus 9 eiL~CP~--ck~-~L~~---~~----~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 9 EVLACPK--DKG-PLRY---LE----SEQLLVNERLNLAYR 39 (67)
T ss_dssp CCCBCTT--TCC-BCEE---ET----TTTEEEETTTTEEEE
T ss_pred HHhCCCC--CCC-cCeE---eC----CCCEEEcCCCCcccc
Confidence 3467998 886 3221 11 122688999988884
No 19
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.03 E-value=33 Score=29.65 Aligned_cols=37 Identities=27% Similarity=0.756 Sum_probs=25.6
Q ss_pred cccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCcc
Q psy10861 320 GHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMD 388 (498)
Q Consensus 320 G~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (498)
-.||. |. ++|-+.| -..+|..|+..|. +.-+||-|.+
T Consensus 33 ~~CP~--Cq-~eL~~~g---------~~~hC~~C~~~f~--------------------~~a~CPdC~q 69 (101)
T 2jne_A 33 LHCPQ--CQ-HVLDQDN---------GHARCRSCGEFIE--------------------MKALCPDCHQ 69 (101)
T ss_dssp CBCSS--SC-SBEEEET---------TEEEETTTCCEEE--------------------EEEECTTTCS
T ss_pred ccCcc--CC-CcceecC---------CEEECccccchhh--------------------ccccCcchhh
Confidence 45999 87 5555532 1456999988876 3458999964
No 20
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=23.25 E-value=1.2e+02 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=20.3
Q ss_pred cccCCcCCCCCCccccccCCCCCCccceEecCCCccccc
Q psy10861 320 GHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYT 358 (498)
Q Consensus 320 G~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~ 358 (498)
..||. |++ +|++-... ......+.|+.|.-.+.
T Consensus 5 ~FCp~--Cgn--lL~~~~~~--~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 5 RFCRD--CNN--MLYPREDK--ENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CBCSS--SCC--BCEEEEET--TTTEEEEECSSSSCEEE
T ss_pred Ccccc--cCc--cCcccccC--cCCCCEEECCcCCCeee
Confidence 34999 984 45433221 12356899999976554
No 21
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=22.98 E-value=37 Score=30.99 Aligned_cols=29 Identities=31% Similarity=0.599 Sum_probs=21.2
Q ss_pred CccccCCcCCCCCCccccccCCCCCCccceEecCCCccccc
Q psy10861 318 DFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYT 358 (498)
Q Consensus 318 ~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~ 358 (498)
.+..|++ |. .+|.|++ + .+.||.|.-+-.
T Consensus 139 v~a~~~~--~g-~~m~~~~--~-------~~~cp~~g~~e~ 167 (179)
T 3m7n_A 139 LRALCSN--CK-TEMVREG--D-------ILKCPECGRVEK 167 (179)
T ss_dssp EECBCTT--TC-CBCEECS--S-------SEECSSSCCEEC
T ss_pred EEecccc--cC-CceEECC--C-------EEECCCCCCEEE
Confidence 3456887 64 7899987 4 799999966654
No 22
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.04 E-value=63 Score=25.42 Aligned_cols=8 Identities=63% Similarity=1.373 Sum_probs=4.4
Q ss_pred ccccCCCc
Q psy10861 380 KSYCPKCM 387 (498)
Q Consensus 380 ~~~~~~~~ 387 (498)
+..||.|+
T Consensus 18 k~~CP~CG 25 (60)
T 2apo_B 18 KEICPKCG 25 (60)
T ss_dssp SSBCSSSC
T ss_pred cccCcCCC
Confidence 44566665
No 23
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.82 E-value=1.1e+02 Score=22.95 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=28.6
Q ss_pred eEecCCCcccccCCCCCCcccCCCCCCCCcccccc--ccCCCc
Q psy10861 347 KSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKS--YCPKCM 387 (498)
Q Consensus 347 klYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~ 387 (498)
+-.|+-|.=||.|..- -...|.--||.|..+.- .||-|+
T Consensus 3 ~y~C~~CGyvYd~~~G--dp~~gi~pGt~f~~lP~dw~CP~Cg 43 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKG--DPDSGIKPGTKFEDLPDDWACPVCG 43 (52)
T ss_dssp CEECSSSCCCCCTTTC--CTTTTCCSSCCTTSSCTTCCCSSSC
T ss_pred cEEeCCCCeEEcCCcC--CcccCcCCCCchHHCCCCCcCCCCC
Confidence 4579999999987431 12345567888888866 999997
No 24
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.69 E-value=52 Score=28.13 Aligned_cols=32 Identities=19% Similarity=0.594 Sum_probs=22.4
Q ss_pred EecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCcccc
Q psy10861 348 SYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVY 390 (498)
Q Consensus 348 lYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (498)
.|||.|+-+-.|+..+ +-..+..+|+.|.-++
T Consensus 5 ~FCp~Cgn~L~~~~~~-----------~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 5 QYCIECNNMLYPREDK-----------VDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCSSSCCCCEECCCT-----------TTCCCCEECSSSCCEE
T ss_pred eeCcCCCCEeeEcccC-----------CCCeeEEECCCCCCeE
Confidence 5999999998876421 1124578999997554
No 25
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=20.11 E-value=86 Score=25.83 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=22.4
Q ss_pred cCCCccccCCcCCCCCCccccccCCCCCCccceEecCCCccccc
Q psy10861 315 QTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYT 358 (498)
Q Consensus 315 ~~~~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~ 358 (498)
.+..| ||+ |.+..|.=+..|-.-. +.++++-.+-..+++
T Consensus 28 ~~k~F--Cp~--CGn~TL~Rvsvsvd~~-G~~~~hl~~n~~~~n 66 (79)
T 2con_A 28 MNRVF--CGH--CGNKTLKKVSVTINDD-GTLHMHFSRNPKVLN 66 (79)
T ss_dssp SSCCS--CSS--SCCSCCEEEECBCCSS-CCCBCCCCCCCCCCC
T ss_pred ccccc--ccc--cCcccceEEEEEECCC-CcEEEeccCCccccc
Confidence 34555 888 7777776666654433 555665555444344
No 26
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.02 E-value=53 Score=26.28 Aligned_cols=30 Identities=17% Similarity=0.363 Sum_probs=18.7
Q ss_pred ccccCCcCCCCCCccccccCCCCCCccceEecCCCccccc
Q psy10861 319 FGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYT 358 (498)
Q Consensus 319 FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~ 358 (498)
...||. |.+ ++- +. ...-.|.||.|+-.|-
T Consensus 8 iL~CP~--ck~-~L~---~~----~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 8 ILVCPV--CKG-RLE---FQ----RAQAELVCNADRLAFP 37 (70)
T ss_dssp CCBCTT--TCC-BEE---EE----TTTTEEEETTTTEEEE
T ss_pred heECCC--CCC-cCE---Ee----CCCCEEEcCCCCceec
Confidence 457998 886 222 11 1234688999988875
Done!