RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10861
(498 letters)
>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit.
Length = 184
Score = 289 bits (742), Expect = 1e-96
Identities = 113/275 (41%), Positives = 145/275 (52%), Gaps = 97/275 (35%)
Query: 157 SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPN 216
SWI WFC L+GNEFFCEVDED+I+D FNLTGLN +VP+YR+ALD+ILDLEPDD+L+++ +
Sbjct: 1 SWIDWFCSLKGNEFFCEVDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDLDEDAS 60
Query: 217 QSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELE 276
Q LIE ++E+LYGLIHARYILT RG+ M+EKY+ GDFG CPRV+C QP+LP+ L
Sbjct: 61 QKSLIESSAELLYGLIHARYILTPRGLALMLEKYKRGDFGTCPRVFCNGQPLLPVG--LS 118
Query: 277 DNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIG 336
D P + ++YC
Sbjct: 119 DVPGK---------------------------------------STVKLYC--------- 130
Query: 337 LSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSR 396
P+C DVY TPKSSR
Sbjct: 131 --------------PRCQDVY---------------------------------TPKSSR 143
Query: 397 HHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
H + DGA+FGT FPH+ M +PE PK+P Q++P
Sbjct: 144 HANIDGAFFGTSFPHLFLMTYPELIPKKPKEQYIP 178
Score = 111 bits (279), Expect = 2e-28
Identities = 38/63 (60%), Positives = 52/63 (82%)
Query: 436 DELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPM 495
D+L+++ +Q LIE ++E+LYGLIHARYILT RG+ M+EKY+ GDFG CPRV+C QP+
Sbjct: 53 DDLDEDASQKSLIESSAELLYGLIHARYILTPRGLALMLEKYKRGDFGTCPRVFCNGQPL 112
Query: 496 LPI 498
LP+
Sbjct: 113 LPV 115
Score = 79.2 bits (196), Expect = 3e-17
Identities = 26/39 (66%), Positives = 35/39 (89%)
Query: 77 QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDED 115
++DED+I+D FNLTGLN +VP+YR+ALD+ILDLEP D+
Sbjct: 17 EVDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDL 55
Score = 78.8 bits (195), Expect = 5e-17
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 112 VDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVSWI 159
VDED+I+D FNLTGLN +VP+YR+ALD+ILDLEP + + S I
Sbjct: 18 VDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDLDEDASQKSLI 65
>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.
Length = 183
Score = 266 bits (683), Expect = 1e-87
Identities = 109/276 (39%), Positives = 136/276 (49%), Gaps = 98/276 (35%)
Query: 157 SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPN 216
SWI WFC L+GNEFFCEVDEDYI+D FNL GL+E+VP+Y++ALD+ILD EP+ E D+
Sbjct: 1 SWIDWFCSLKGNEFFCEVDEDYIEDDFNLYGLSEEVPNYKEALDLILDKEPESESLDDDK 60
Query: 217 QSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELE 276
+ + IE+ +E LYGLIHARYILT +G+ QM EKY+ G+FG CPRV C QP+LPI L
Sbjct: 61 K-EEIEKEAEKLYGLIHARYILTPKGLAQMKEKYKEGEFGTCPRVLCNGQPLLPIG--LS 117
Query: 277 DNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIG 336
D P + ++YC
Sbjct: 118 DVPGE---------------------------------------STVKLYC--------- 129
Query: 337 LSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSR 396
P+C DVY PKSSR
Sbjct: 130 --------------PRCQDVY---------------------------------NPKSSR 142
Query: 397 HHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPS 432
H + DGAYFGT FPHM M +PE PK P Q++P
Sbjct: 143 HSNIDGAYFGTSFPHMFLMTYPELVPKPPAKQYIPR 178
Score = 106 bits (266), Expect = 1e-26
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 435 NDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQP 494
+ + ++ + IE+ +E LYGLIHARYILT +G+ QM EKY+ G+FG CPRV C QP
Sbjct: 51 PESESLDDDKKEEIEKEAEKLYGLIHARYILTPKGLAQMKEKYKEGEFGTCPRVLCNGQP 110
Query: 495 MLPI 498
+LPI
Sbjct: 111 LLPI 114
Score = 76.4 bits (189), Expect = 3e-16
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 77 QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKF 121
++DEDYI+D FNL GL+E+VP+Y++ALD+ILD EP E DK
Sbjct: 17 EVDEDYIEDDFNLYGLSEEVPNYKEALDLILDKEPESESLDDDKK 61
Score = 73.3 bits (181), Expect = 4e-15
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 112 VDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSS 153
VDEDYI+D FNL GL+E+VP+Y++ALD+ILD EP S +
Sbjct: 18 VDEDYIEDDFNLYGLSEEVPNYKEALDLILDKEPESESLDDD 59
>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional.
Length = 251
Score = 216 bits (551), Expect = 4e-67
Identities = 95/282 (33%), Positives = 119/282 (42%), Gaps = 97/282 (34%)
Query: 150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDD 209
S E + WI WFC L+G+EF CEVDED+I+D+FNL GL + P Y +ALDMILD EP D
Sbjct: 15 EPSEESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYNEALDMILDSEPPD 74
Query: 210 ELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPML 269
+ + Q + Q + LYGLIHAR+I T +G+ M EKY G FGHCPRV CE Q +L
Sbjct: 75 DEDLEDEQFLEVYQEASDLYGLIHARFITTPKGLALMREKYLQGKFGHCPRVLCEGQNVL 134
Query: 270 PIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCES 329
PI L D +VYC
Sbjct: 135 PIG--LSDVLKT---------------------------------------SRVKVYC-- 151
Query: 330 QPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV 389
P+C +VY PK
Sbjct: 152 ---------------------PRCQEVYHPK----------------------------- 161
Query: 390 YTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
S DGA+FGT FPH+ M +PE P +P +VP
Sbjct: 162 ----KSSLLDIDGAFFGTSFPHLFLMTYPELIPTKPPQYYVP 199
Score = 91.6 bits (228), Expect = 6e-21
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 432 SSRNDELEDNPNQSDL-IEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYC 490
S + ED ++ L + Q + LYGLIHAR+I T +G+ M EKY G FGHCPRV C
Sbjct: 69 DSEPPDDEDLEDEQFLEVYQEASDLYGLIHARFITTPKGLALMREKYLQGKFGHCPRVLC 128
Query: 491 ESQPMLPI 498
E Q +LPI
Sbjct: 129 EGQNVLPI 136
Score = 64.3 bits (157), Expect = 2e-11
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 77 QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQD 119
++DED+I+D+FNL GL + P Y +ALDMILD EP D++ ++D
Sbjct: 38 EVDEDFIRDEFNLYGLKSKFPFYNEALDMILDSEPPDDEDLED 80
>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction
mechanisms / Cell division and chromosome partitioning /
Transcription].
Length = 242
Score = 210 bits (536), Expect = 4e-65
Identities = 96/281 (34%), Positives = 131/281 (46%), Gaps = 99/281 (35%)
Query: 151 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDE 210
SSE WI WFC +GNE+FCEV E++I+D+FNLTGL+ +VPHY + LD+ILD
Sbjct: 19 DSSEYDEWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPSN 78
Query: 211 LEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLP 270
LE+ ++ D+IE+++ LYGLIHARYI+T G+ M+EKY++ +FG CPRVYC Q +LP
Sbjct: 79 LEN--DEVDIIEESARQLYGLIHARYIITKSGLQAMLEKYKSREFGACPRVYCNGQQVLP 136
Query: 271 IDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQ 330
+ L D P + ++YC
Sbjct: 137 VG--LSDIPGK---------------------------------------SSVKLYC--- 152
Query: 331 PMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVY 390
P C D+Y PKSSRH + +
Sbjct: 153 --------------------PSCEDLYLPKSSRH--------------------QSI--- 169
Query: 391 TPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
DGA+FGT FPHM PE PKR +++P
Sbjct: 170 ----------DGAFFGTSFPHMFLQTFPELFPKRSCERYIP 200
Score = 87.9 bits (218), Expect = 1e-19
Identities = 30/55 (54%), Positives = 43/55 (78%)
Query: 444 QSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI 498
+ D+IE+++ LYGLIHARYI+T G+ M+EKY++ +FG CPRVYC Q +LP+
Sbjct: 83 EVDIIEESARQLYGLIHARYIITKSGLQAMLEKYKSREFGACPRVYCNGQQVLPV 137
Score = 58.3 bits (141), Expect = 1e-09
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 112 VDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSL 148
V E++I+D+FNLTGL+ +VPHY + LD+ILD S
Sbjct: 42 VPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPSN 78
Score = 58.3 bits (141), Expect = 1e-09
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 77 QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVD 113
++ E++I+D+FNLTGL+ +VPHY + LD+ILD
Sbjct: 41 EVPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPS 77
>gnl|CDD|202678 pfam03536, VRP3, Salmonella virulence-associated 28kDa protein.
Length = 240
Score = 36.5 bits (84), Expect = 0.020
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 73 RRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPH 132
R +PQ D+ DKF+++ L EQVP QAL +L ED DK+ +T + V
Sbjct: 90 RENPQSKGDFAGDKFHISVLREQVPQAFQALSGLL----FSEDSPIDKWKVTDMERVVQQ 145
Query: 133 YRQAL 137
R +L
Sbjct: 146 SRVSL 150
>gnl|CDD|185157 PRK15245, PRK15245, type III effector phosphothreonine lyase;
Provisional.
Length = 241
Score = 35.3 bits (81), Expect = 0.046
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 32/132 (24%)
Query: 15 SSVKKTAKDSGPALLRIETDEKIGLYGFKIHSLAYQLQQNAAANFKTPVRAVSY------ 68
+ A GP + K +SL Q++Q A++FK + Y
Sbjct: 13 PPLNVVAAYEGPQMPSTNEHLKNNF-----NSLHNQMRQMPASHFKEALDVPDYSGMRQS 67
Query: 69 ------------NTG-------KRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDL 109
N G +R PQ D+ DKF+++ +QVP QAL +L
Sbjct: 68 GFFAMSQGFQLVNHGYDVFIHARRESPQSKGDFAGDKFHISVARDQVPQAFQALSGLLFS 127
Query: 110 E--PVDEDYIQD 119
E PVD+ + D
Sbjct: 128 EDSPVDKWKVTD 139
>gnl|CDD|225406 COG2850, COG2850, Uncharacterized conserved protein [Function
unknown].
Length = 383
Score = 33.1 bits (76), Expect = 0.33
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 3/118 (2%)
Query: 97 PHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEV 156
+IL D D + + ++ + PHY A D + G ++ E +
Sbjct: 162 TLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAEDDCMTYSVGFRAPNTRELL 221
Query: 157 SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDN 214
S F R ++ D D L V M+LDL E DN
Sbjct: 222 SGFLDFFLQRESDELRYSDADLPPRGHPGELLPAMV---DALAAMLLDLLNQPEAFDN 276
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 33.0 bits (75), Expect = 0.44
Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 30/162 (18%)
Query: 71 GKRRDPQIDEDYIQDKF-NLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQ 129
K+ D + DKF L +NE + + L E EDY QD
Sbjct: 182 EKKFDKSG----VDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSE------- 230
Query: 130 VPHYRQALDMILDLEPGSLKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLN 189
D D + GS + +E + +FF ++D +D + L
Sbjct: 231 --------DGKDDEDFGSGEDEEDDEEG------NIEYEDFFDPKEKDKKKDAGDDAELE 276
Query: 190 EQVPH---YRQALDMILDLEPDDELEDNPNQSDLIEQASEML 228
+ P ++ D E D+E ++ + D E +
Sbjct: 277 DDEPDKEAVKKEAD-SKPEEEDEEDDEQEDDQDEEEPPEAAM 317
>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding
protein Eve-1. Eve-1, also called SH3 domain-containing
protein 19 (SH3D19) or EEN-binding protein (EBP), exists
in multiple alternatively spliced isoforms. The longest
isoform contains five SH3 domain in the C-terminal
region and seven proline-rich motifs in the N-terminal
region. It is abundantly expressed in skeletal muscle
and heart, and may be involved in regulating the
activity of ADAMs (A disintegrin and metalloproteases).
Eve-1 interacts with EEN, an endophilin involved in
endocytosis and may be the target of the MLL-EEN fusion
protein that is implicated in leukemogenesis. SH3
domains are protein interaction domains that bind to
proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 50
Score = 27.8 bits (62), Expect = 1.7
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 87 FNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKF 121
++ TG NE + +A D+I +LE +DE+++ +
Sbjct: 6 YDFTGENEDELSF-KAGDIITELESIDEEWMSGEL 39
>gnl|CDD|225441 COG2887, COG2887, RecB family exonuclease [DNA replication,
recombination, and repair].
Length = 269
Score = 29.4 bits (66), Expect = 4.2
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 6/73 (8%)
Query: 431 PSSRNDELEDNPNQSDLIEQASEMLYGL------IHARYILTNRGIGQMIEKYQTGDFGH 484
S R E DN Q + A E L L + R + + +G
Sbjct: 196 KSGRVGEAPDNREQLPQLALAREALAELAELLAGLEVRPRGYSSRCDLCPHQDLCPAYGG 255
Query: 485 CPRVYCESQPMLP 497
R+ S
Sbjct: 256 LARLLEGSADGES 268
>gnl|CDD|238927 cd01965, Nitrogenase_MoFe_beta_like, Nitrogenase_MoFe_beta_like:
Nitrogenase MoFe protein, beta subunit_like. The
nitrogenase enzyme catalyzes the ATP-dependent reduction
of dinitrogen (N2) to ammonia. This group contains the
beta subunits of component 1 of the three known
genetically distinct types of nitrogenase systems: a
molybdenum-dependent nitrogenase (Mo-nitrogenase), a
vanadium-dependent nitrogenase (V-nitrogenase), and an
iron-only nitrogenase (Fe-nitrogenase). These
nitrogenase systems consist of component 1 (MoFe
protein, VFe protein or, FeFe protein respectively) and,
component 2 (Fe protein). The most widespread and best
characterized of these systems is the Mo-nitrogenase.
MoFe is an alpha2beta2 tetramer, the alternative
nitrogenases are alpha2beta2delta2 hexamers having
alpha and beta subunits similar to the alpha and beta
subunits of MoFe. For MoFe, each alphabeta pair contains
one P-cluster (at the alphabeta interface) and, one
molecule of iron molybdenum cofactor (FeMoco) contained
within the alpha subunit. The Fe protein contains, a
single [4Fe-4S] cluster from which electrons are
transferred to the P-cluster of the MoFe and in turn,
to FeMoCo, the site of substrate reduction. The
V-nitrogenase requires an iron-vanadium cofactor
(FeVco), the iron only-nitrogenase an iron only cofactor
(FeFeco). These cofactors are analogous to the FeMoco.
The V-nitrogenase has P clusters identical to those of
MoFe. In addition to N2, nitrogenase also catalyzes the
reduction of a variety of other substrates such as
acetylene The V-nitrogenase differs from the
Mo-nitrogenase in that it produces free hydrazine, as a
minor product during N2-reduction and, ethane as a minor
product during acetylene reduction.
Length = 428
Score = 29.1 bits (66), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 2 LQRTGSADLIVGGSSVKKTAKDSGPALLRIETDEKIGLYGFKIH 45
L + DL++G S + A+D G L+R+ GF I
Sbjct: 366 LAKEEPVDLLIGNSHGRYLARDLGIPLVRV---------GFPIF 400
>gnl|CDD|212107 cd10795, GH57N_MJA1_like, N-terminal catalytic domain of a
thermoactive alpha-amylase from Methanococcus jannaschii
and similar proteins; glycoside hydrolase family 57
(GH57). The subfamily is represented by a thermostable
alpha-amylase (MJA1, EC 3.2.1.1) encoded from the
hyperthermophilic archaeon Methanococcus jannaschii
locus, M J1611. MJA1 has a broad pH optimum 5.0-8.0. It
exhibits extremely thermophilic alpha-amylase activity
that catalyzes the hydrolysis of large sugar polymers
with alpha-l,6 and alpha-l,4 linkages, and yields
products including glucose polymers of 1-7 units. MJ1611
also encodes another alpha-amylase with catalytic
features distinct from MJA1, which belongs to glycoside
hydrolase family 13 (GH-13), and is not included here.
This subfamily also includes many uncharacterized
proteins found in bacteria and archaea.
Length = 306
Score = 28.7 bits (65), Expect = 7.3
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 414 FMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHAR-YILTNRGIGQ 472
F VH YR KR QF + D+ ++ + +E + Y+ NR + +
Sbjct: 6 FEVHQPYRLKRYFFQFDIGL-DHRYFDDELNREIFRRVAE--------KCYLPANRLLLE 56
Query: 473 MIEKYQTGDF 482
+IE+Y G F
Sbjct: 57 LIEEY--GGF 64
>gnl|CDD|150725 pfam10083, DUF2321, Uncharacterized protein conserved in bacteria
(DUF2321). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 158
Score = 28.0 bits (62), Expect = 7.3
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 320 GHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMV 379
GH P L G A + S CP C + ++ DG+ + +
Sbjct: 13 GHQITTSASPSPELMENFCSKCGAATITS-CPHC----STPIRGFYYVDGVLGLGSDYDA 67
Query: 380 KSYCPKC 386
SYC C
Sbjct: 68 PSYCHNC 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.418
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,874,650
Number of extensions: 2542326
Number of successful extensions: 2054
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2051
Number of HSP's successfully gapped: 41
Length of query: 498
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 397
Effective length of database: 6,457,848
Effective search space: 2563765656
Effective search space used: 2563765656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)