RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10861
(498 letters)
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo
sapiens) [TaxId: 9606]}
Length = 173
Score = 245 bits (628), Expect = 2e-80
Identities = 156/270 (57%), Positives = 165/270 (61%), Gaps = 97/270 (35%)
Query: 156 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNP 215
VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPD+ELEDNP
Sbjct: 1 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNP 60
Query: 216 NQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDEL 275
NQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QPMLPI L
Sbjct: 61 NQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIG--L 118
Query: 276 EDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI 335
D P ++ ++YC
Sbjct: 119 SDIPGEA---------------------------------------MVKLYC-------- 131
Query: 336 GLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSS 395
PKCMDVY TPKSS
Sbjct: 132 ---------------PKCMDVY---------------------------------TPKSS 143
Query: 396 RHHHTDGAYFGTGFPHMLFMVHPEYRPKRP 425
RHHHTDGAYFGTGFPHMLFMVHPEYRPKRP
Sbjct: 144 RHHHTDGAYFGTGFPHMLFMVHPEYRPKRP 173
Score = 101 bits (253), Expect = 7e-26
Identities = 56/63 (88%), Positives = 61/63 (96%)
Query: 436 DELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPM 495
+ELEDNPNQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QPM
Sbjct: 54 EELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPM 113
Query: 496 LPI 498
LPI
Sbjct: 114 LPI 116
Score = 66.0 bits (161), Expect = 3e-13
Identities = 34/46 (73%), Positives = 38/46 (82%)
Query: 77 QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFN 122
++DEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP +E +
Sbjct: 18 EVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQS 63
Score = 63.3 bits (154), Expect = 2e-12
Identities = 35/49 (71%), Positives = 37/49 (75%)
Query: 112 VDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVSWIS 160
VDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP + + I
Sbjct: 19 VDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIE 67
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 28.9 bits (64), Expect = 1.4
Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 19/167 (11%)
Query: 276 EDNPN--QSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPML 333
+ PN +S + A +++G+++ R + +G M E Y RV+ +
Sbjct: 51 SEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRL-LGVE 109
Query: 334 PIGLSDVPGEAMVKSYCPKCMDVYT-----PKSSRHHHTDGLSDVPG----EAMVKSYCP 384
+ +++ G + ++ + + P S + G ++ AM +Y
Sbjct: 110 TLVVTNAAG-GLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDR 168
Query: 385 ----KCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVN 427
K + + +G Y G P+ F E R R +
Sbjct: 169 DMRQKAHSTWKQMGEQRELQEGTYVMLGGPN--FETVAECRLLRNLG 213
>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab
(Limulus polyphemus) [TaxId: 6850]}
Length = 270
Score = 28.6 bits (64), Expect = 1.7
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 407 TGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILT 466
PH+ + +Y RP + + E+ + + + E + IH Y+++
Sbjct: 126 GYAPHLTHVASGKYYSPRPDGLKLRDLGDIEISE-------MVRMRERILDSIHLGYVIS 178
Query: 467 NRG 469
G
Sbjct: 179 EDG 181
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid
leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 132
Score = 27.7 bits (62), Expect = 1.7
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 188 LNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMI 247
L + VP + +D +LD + N +I A +L+ + N GI ++
Sbjct: 15 LLKTVPIIQNQMDALLDFNVNSNELTN----GVINAAFMLLFKDAIRLFAAYNEGIINLL 70
Query: 248 EKYQTGDFGHCPRVY 262
EKY C
Sbjct: 71 EKYFDMKKNQCKEGL 85
>d1hlma_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina
arenicola, also known as Molpadia arenicola [TaxId:
7698]}
Length = 158
Score = 27.7 bits (61), Expect = 2.4
Identities = 6/78 (7%), Positives = 18/78 (23%), Gaps = 6/78 (7%)
Query: 400 TDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLI 459
T F +F P + + P + + A + +
Sbjct: 29 THRTGFVADVFIRIFHNDPTAQ------RKFPQMAGLSPAELRTSRQMHAHAIRVSALMT 82
Query: 460 HARYILTNRGIGQMIEKY 477
+ + +++
Sbjct: 83 TYIDEMDTEVLPELLATL 100
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 133
Score = 27.0 bits (60), Expect = 2.5
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 188 LNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMI 247
L + +P + LD +L+ + N +I + +L+ + + N GI ++
Sbjct: 12 LLKTLPVLQAQLDALLEFDCQSNDLSN----GVINMSFMLLFRDLIRLFACYNDGIINLL 67
Query: 248 EKYQTGDFGHCPRVY 262
EKY + H
Sbjct: 68 EKYFDMNKKHARDAL 82
>d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas
campestris pv. campestris [TaxId: 340]}
Length = 139
Score = 27.0 bits (59), Expect = 2.7
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 14 GSSVKKTAKDSGPALLRIETDEKIGLYGF 42
GS D A + + TD L G+
Sbjct: 21 GSDAMNPDPDYSAAYVVLRTDGAEDLAGY 49
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 27.8 bits (61), Expect = 3.3
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 4 RTGSADLIVGGSSVKKTAKDSGPALLRI 31
+ DL++ + K A++ +R
Sbjct: 381 KNEGVDLLISNTYGKFIAREENIPFVRF 408
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 27.1 bits (59), Expect = 3.5
Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 3/109 (2%)
Query: 211 LEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLP 270
+E Q D ++ S +++ I I E + TG + P
Sbjct: 20 MEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP 79
Query: 271 IDDELEDNPNQSDLIEQ---ASEMLYGLIHARYILTNRGIGQMIEKYQT 316
+ Q + I G G MI Y
Sbjct: 80 TTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSP 128
Score = 26.3 bits (57), Expect = 6.7
Identities = 10/80 (12%), Positives = 18/80 (22%)
Query: 275 LEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLP 334
+E Q D ++ S +++ I I E + TG + P
Sbjct: 20 MEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP 79
Query: 335 IGLSDVPGEAMVKSYCPKCM 354
Sbjct: 80 TTFRPNEVIKGWTEALQLMR 99
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria
mellonella densovirus [TaxId: 37138]}
Length = 415
Score = 27.6 bits (61), Expect = 4.0
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 280 NQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSD 339
N + + +E + L + I IEK Q G + QP + IG+
Sbjct: 275 NPPEATQNVAESTHNLTR-NFPADLFNIYSDIEKSQVLHKGPWGHENPQIQPSVHIGIQA 333
Query: 340 VP 341
VP
Sbjct: 334 VP 335
>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen
E) {Cow (Bos taurus) [TaxId: 9913]}
Length = 232
Score = 27.0 bits (58), Expect = 5.2
Identities = 26/193 (13%), Positives = 48/193 (24%), Gaps = 25/193 (12%)
Query: 231 LIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASE 290
LI +++T GHC Q +L D ++ + A +
Sbjct: 24 LIAPDWVVTA---------------GHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGD 68
Query: 291 MLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPM--LPIGLSDVPGEAMVKS 348
+ +H + G I + + + LP +P EA
Sbjct: 69 L---FVHPLWNSNCVACGNDIALVKL----SRSAQLGDKVQLANLPPAGDILPNEAPCYI 121
Query: 349 YCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTG 408
+ P + L V E + T + G +G
Sbjct: 122 SGWGRLYTGGPLPDKLQQAL-LPTVDYEHCSQWDWWGITVKKTMVCAGGDTRSGCNGDSG 180
Query: 409 FPHMLFMVHPEYR 421
P ++
Sbjct: 181 GPLNCPAADGSWQ 193
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/102 (12%), Positives = 24/102 (23%), Gaps = 2/102 (1%)
Query: 314 YQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDV 373
T + + M GL + ++CPKC V + D
Sbjct: 125 VTTCEPEYYRWNQWIFLKMWEKGL--AYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDT 182
Query: 374 PGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFM 415
P E + Y + + ++
Sbjct: 183 PVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWI 224
>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein)
{Horse (Equus caballus) [TaxId: 9796]}
Length = 237
Score = 26.6 bits (57), Expect = 7.1
Identities = 20/168 (11%), Positives = 41/168 (24%), Gaps = 16/168 (9%)
Query: 231 LIHARYILT----------------NRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDE 274
L+H +++LT N + ++ + S
Sbjct: 30 LVHPQWVLTAAHCMSDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRP 89
Query: 275 LEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLP 334
+D + L+ A L + Y +G S +
Sbjct: 90 YDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQC 149
Query: 335 IGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSY 382
+ L E ++Y K + + R G A++
Sbjct: 150 VELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALICDG 197
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid
dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 148
Score = 25.9 bits (57), Expect = 8.6
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 195 YRQALDMILDLEPDDELEDNPNQSDLIEQ 223
Y +A + D P + D L+ Q
Sbjct: 62 YIRAFQKLTDFPPIKDQADEAQYCQLVRQ 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.418
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,956,127
Number of extensions: 96362
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 22
Length of query: 498
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,185,626
Effective search space: 484921034
Effective search space used: 484921034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)