BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10865
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HGC|A Chain A, Crystal Structure Of A Functional Acid Sensing Ion Channel
In The Desensitized State
pdb|3IJ4|A Chain A, Cesium Sites In The Crystal Structure Of A Functional Acid
Sensing Ion Channel In The Desensitized State
Length = 465
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 29/135 (21%)
Query: 164 AGRHLGLTVVLDANIEEYF----CSSEASY--GFKLLLQNPVETPKLAAFGELISPG--- 214
G GL ++LD +EY + E S+ G K+ + + E P + G ++PG
Sbjct: 212 GGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQT 271
Query: 215 -----RESLIVIKPIINKSNPSIATSDPELRQCLFNKERALRFYRHYTQRNCILECEANF 269
+ LI + P + S+ FY Y+ C ++CE +
Sbjct: 272 FVSCQEQRLIYLPPPWGDCKATTGDSE---------------FYDTYSITACRIDCETRY 316
Query: 270 TLSFCQCVMYFMPKD 284
+ C C M MP D
Sbjct: 317 LVENCNCRMVHMPGD 331
>pdb|4FZ0|A Chain A, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ0|B Chain B, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ0|C Chain C, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ1|A Chain A, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At High Ph
Length = 450
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 164 AGRHLGLTVVLDANIEEYFC----SSEASY--GFKLLLQNPVETPKLAAFGELISPGRES 217
G GL ++LD +EY + E S+ G K+ + + E P + G ++PG ++
Sbjct: 200 GGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQT 259
Query: 218 LIVIKP--IINKSNP----SIATSDPELRQCLFNKERALRFYRHYTQRNCILECEANFTL 271
+ + +I P T D E FY Y+ C ++CE + +
Sbjct: 260 FVSCQEQRLIYLPPPWGDCKATTGDSE-------------FYDTYSITACRIDCETRYLV 306
Query: 272 SFCQCVMYFMPKD 284
C C M MP D
Sbjct: 307 ENCNCRMVHMPGD 319
>pdb|3S3W|A Chain A, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3W|B Chain B, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3W|C Chain C, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3X|A Chain A, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
pdb|3S3X|B Chain B, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
pdb|3S3X|C Chain C, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
Length = 459
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 164 AGRHLGLTVVLDANIEEYF----CSSEASY--GFKLLLQNPVETPKLAAFGELISPGRES 217
G GL ++LD +EY + E S+ G K+ + + E P + G ++PG ++
Sbjct: 209 GGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQT 268
Query: 218 LIVIKP--IINKSNP----SIATSDPELRQCLFNKERALRFYRHYTQRNCILECEANFTL 271
+ + +I P T D E FY Y+ C ++CE + +
Sbjct: 269 FVSCQEQRLIYLPPPWGDCKATTGDSE-------------FYDTYSITACRIDCETRYLV 315
Query: 272 SFCQCVMYFMPKD 284
C C M MP D
Sbjct: 316 ENCNCRMVHMPGD 328
>pdb|2QTS|A Chain A, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|B Chain B, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|C Chain C, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|D Chain D, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|E Chain E, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|F Chain F, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
Length = 438
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 164 AGRHLGLTVVLDANIEEYF----CSSEASY--GFKLLLQNPVETPKLAAFGELISPGRES 217
G GL ++LD +EY + E S+ G K+ + + E P + G ++PG ++
Sbjct: 188 GGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQT 247
Query: 218 LIVIKP--IINKSNP----SIATSDPELRQCLFNKERALRFYRHYTQRNCILECEANFTL 271
+ + +I P T D E FY Y+ C ++CE + +
Sbjct: 248 FVSCQEQRLIYLPPPWGDCKATTGDSE-------------FYDTYSITACRIDCETRYLV 294
Query: 272 SFCQCVMYFMPKD 284
C C M MP D
Sbjct: 295 ENCNCRMVHMPGD 307
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 237 PELRQCLFNKERALRFYRHYTQRNCILECEANFTLSFCQ 275
P+ +C F KE L + RNC+ E FT S CQ
Sbjct: 39 PKCGKCYFRKENLLE----HEARNCMNRSEQVFTCSVCQ 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,474,204
Number of Sequences: 62578
Number of extensions: 873241
Number of successful extensions: 1752
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1748
Number of HSP's gapped (non-prelim): 5
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)