Query psy10865
Match_columns 667
No_of_seqs 487 out of 1324
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 20:25:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qts_A Acid-sensing ION channe 100.0 2.2E-34 7.6E-39 318.5 21.2 191 157-374 181-381 (438)
2 2qts_A Acid-sensing ION channe 97.3 0.00011 3.7E-09 80.6 3.5 54 47-101 180-239 (438)
3 2jp3_A FXYD domain-containing 14.6 89 0.003 24.5 2.2 16 430-445 22-37 (67)
4 2jo1_A Phospholemman; FXYD1, N 14.0 89 0.0031 24.7 2.1 17 430-446 21-37 (72)
5 2zxe_G FXYD10, phospholemman-l 13.4 1E+02 0.0034 24.7 2.3 16 430-445 24-39 (74)
6 1wi3_A DNA-binding protein SAT 12.6 51 0.0018 26.2 0.4 14 504-517 52-65 (71)
7 1afo_A Glycophorin A; integral 11.2 2.3E+02 0.0077 19.8 3.2 21 426-446 11-31 (40)
8 2l9u_A Receptor tyrosine-prote 10.7 2.1E+02 0.0071 19.4 2.8 17 429-445 13-29 (40)
9 2l8s_A Integrin alpha-1; trans 10.5 2E+02 0.007 21.6 3.0 28 418-445 4-31 (54)
10 2zvv_Y Cyclin-dependent kinase 10.5 42 0.0014 20.9 -0.6 15 503-517 8-22 (26)
No 1
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=100.00 E-value=2.2e-34 Score=318.51 Aligned_cols=191 Identities=23% Similarity=0.399 Sum_probs=163.6
Q ss_pred CCcccCCCCCCCceEEEEeccccccccCCCc------CcceEEEeeCCCCCCccccCceeeCCCCeEEEEEEEEEeecCC
Q psy10865 157 IPWRPWGAGRHLGLTVVLDANIEEYFCSSEA------SYGFKLLLQNPVETPKLAAFGELISPGRESLIVIKPIINKSNP 230 (667)
Q Consensus 157 ~P~r~~~~G~~~GL~lvL~~~~~dy~~~~~~------~~GfkV~IH~p~e~P~~~~~g~~v~pG~~t~i~V~p~~~~~~~ 230 (667)
.|+++..+|..+||+|+|+++++||.+.... .+||+|+||+|.|+|+++..|+.|+||.+++|+|++..+.
T Consensus 181 ~~~~~~~~G~~~GL~l~L~~~~~~y~~~~~~~~~~~~~~G~~v~iH~~~e~P~~~~~g~~v~~g~~t~v~v~~~~~~--- 257 (438)
T 2qts_A 181 PRLITMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQTFVSCQEQRLI--- 257 (438)
T ss_dssp SCCEECSSSGGGSEEEEEECCGGGCCCCCSCCTTCCSCBSEEEEEECTTSCCCHHHHCEEECTTEEEEEEEEEEEEE---
T ss_pred ccceecCCccCCCceEEEEcccccccccccccccccccCceEEEECCCCCCCcccccceecCCCCEEEEEEEEEEee---
Confidence 3577888999999999999999999975332 3999999999999999999999999999999999987654
Q ss_pred cccccCCCCCcccCCccccccccccccHHHHHHHHHHHHHhhcCCCccccCCCCCCCcCCCCCCc-ccHHHHHHHHHHHh
Q psy10865 231 SIATSDPELRQCLFNKERALRFYRHYTQRNCILECEANFTLSFCQCVMYFMPKDRFTRICGKKDT-DCADKAKLAMEMRL 309 (667)
Q Consensus 231 ~lr~l~p~~R~C~f~~E~~L~~f~~YS~~nC~~eC~~~~~~~~CgCvp~~~P~~~~~~~C~~~~l-~Cl~~~~~~~~~~~ 309 (667)
.+++++|+|+|++| .++||+.||+++|+.||+++++++.|||++++||+ +.++|++.++ .|+.++...+..
T Consensus 258 ---~l~~~~r~C~~~~~-~l~~~~~Ys~~~C~~eC~~~~~~~~CgC~~~~~P~--~~~~C~~~~~~~C~~~~~~~~~~-- 329 (438)
T 2qts_A 258 ---YLPPPWGDCKATTG-DSEFYDTYSITACRIDCETRYLVENCNCRMVHMPG--DAPYCTPEQYKECADPALDFLVE-- 329 (438)
T ss_dssp ---CCCTTTCCCBCCCS-CCSSCSSCCHHHHHHHHHHHHHHHHHSSBCTTCCS--SSCBCCHHHHHHTHHHHHHHHHH--
T ss_pred ---ccCCCcCCCcCCCC-CCcccCCCCHHHHHHHHHHHHHHhcCCCEeeCCCC--CCCCCChHHHHHHHHHHHHHHhc--
Confidence 48899999999876 58899999999999999999999999999999997 5799999985 699988765521
Q ss_pred hcccccccccccCCCCCCCCCCCCCCCceEEEeEEEeeecCCChhhhhcccc---ccCHHHHhhcccc
Q psy10865 310 SQNLSNISKIFNDTTQKPNCGCLPGCFSLGYSKTQSSSTLAENPRIKKRYLA---GKSLEYFRMASTS 374 (667)
Q Consensus 310 ~~~~~ni~~~~~~~~~~~~C~Clp~C~~~~Y~~~~S~s~lps~~~~~~~~~~---~~s~~y~~~n~~~ 374 (667)
.....|+|+|+|+++.|.+++|+++||+... .+++. +.+.+|+++|.+.
T Consensus 330 --------------~~~~~C~C~~~C~~~~Y~~~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~n~~~ 381 (438)
T 2qts_A 330 --------------KDNEYCVCEMPCNVTRYGKELSMVKIPSKAS--AKYLAKKYNKSEQYIGENILV 381 (438)
T ss_dssp --------------TCSSSSCCCCBSEEEEEEEEEEEEESSCTTT--HHHHHHHHTCCHHHHHHHEEE
T ss_pred --------------CCCCCCCCCCcccceeeeeEEEEeeCCchHH--HHHHHHhcCcchhhHhhcEEE
Confidence 2346799999999999999999999998632 34432 5788888877654
No 2
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=97.27 E-value=0.00011 Score=80.59 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCccCCCcCccccceEEEeccccceeccCCccc------cCceEEEeeCCccccccccccC
Q psy10865 47 SIPWRPWGAGRHLGLTVVLDANIEEYFCSSEAS------YGFKSIVLTTPSLVLKPYRDLL 101 (667)
Q Consensus 47 ~yP~r~~~~G~~~gl~~~l~~~~~dy~c~~~~~------~Gfk~v~lh~p~~~p~~~~q~l 101 (667)
..|+|+.++|...||.|+|+.+.+||+|....+ +||| |+||+|+|+|.+..+.+
T Consensus 180 ~~~~~~~~~G~~~GL~l~L~~~~~~y~~~~~~~~~~~~~~G~~-v~iH~~~e~P~~~~~g~ 239 (438)
T 2qts_A 180 KPRLITMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIK-VQIHSQDEPPLIDQLGF 239 (438)
T ss_dssp SSCCEECSSSGGGSEEEEEECCGGGCCCCCSCCTTCCSCBSEE-EEEECTTSCCCHHHHCE
T ss_pred CccceecCCccCCCceEEEEcccccccccccccccccccCceE-EEECCCCCCCcccccce
Confidence 456889999999999999999999999864322 9999 99999999999877553
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=14.57 E-value=89 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhh
Q psy10865 430 FTFGLFFIPIGVGLVY 445 (667)
Q Consensus 430 ~~ig~ifi~iGi~~~~ 445 (667)
++++.+++++||+++.
T Consensus 22 LifA~vLfi~GI~iil 37 (67)
T 2jp3_A 22 LIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4556666777888876
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=13.96 E-value=89 Score=24.74 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhe
Q psy10865 430 FTFGLFFIPIGVGLVYF 446 (667)
Q Consensus 430 ~~ig~ifi~iGi~~~~~ 446 (667)
++++.+++++||+++..
T Consensus 21 LifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 21 LVIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 45566667778887763
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=13.36 E-value=1e+02 Score=24.65 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhh
Q psy10865 430 FTFGLFFIPIGVGLVY 445 (667)
Q Consensus 430 ~~ig~ifi~iGi~~~~ 445 (667)
++++.+++++||+++.
T Consensus 24 LifA~vLfi~GI~iil 39 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHH
Confidence 4556666778888876
No 6
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=12.63 E-value=51 Score=26.21 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=11.2
Q ss_pred ecchhhhhhhhhcC
Q psy10865 504 LTNFYQNHRRYVKS 517 (667)
Q Consensus 504 L~nFyQNhrryv~S 517 (667)
+--||||.|-|++-
T Consensus 52 IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 52 IIKFFQNQRYHVKH 65 (71)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHhhccceeeecC
Confidence 34699999999974
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=11.20 E-value=2.3e+02 Score=19.83 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhe
Q psy10865 426 MPAFFTFGLFFIPIGVGLVYF 446 (667)
Q Consensus 426 ~~~~~~ig~ifi~iGi~~~~~ 446 (667)
..+++++|+..-.+|++++++
T Consensus 11 ~i~lII~~vmaGiIG~IllI~ 31 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLIS 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456677888888899888764
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=10.71 E-value=2.1e+02 Score=19.42 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy10865 429 FFTFGLFFIPIGVGLVY 445 (667)
Q Consensus 429 ~~~ig~ifi~iGi~~~~ 445 (667)
..-+.++|+.+|..+++
T Consensus 13 i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 13 IAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCceeEE
Confidence 34456788888876654
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.49 E-value=2e+02 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.037 Sum_probs=20.5
Q ss_pred eeccCccchhHHHHHHHHHHHHHHhhhh
Q psy10865 418 PILTAGTVMPAFFTFGLFFIPIGVGLVY 445 (667)
Q Consensus 418 PilTp~~v~~~~~~ig~ifi~iGi~~~~ 445 (667)
|.-.|-|++++-.+.|++.+++-+++++
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445778888888888888887776665
No 10
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=10.48 E-value=42 Score=20.91 Aligned_cols=15 Identities=40% Similarity=0.817 Sum_probs=11.8
Q ss_pred EecchhhhhhhhhcC
Q psy10865 503 GLTNFYQNHRRYVKS 517 (667)
Q Consensus 503 ~L~nFyQNhrryv~S 517 (667)
.|+.|||.-||-|-+
T Consensus 8 s~TDFYhsKRRlvf~ 22 (26)
T 2zvv_Y 8 SMTDFYHSKRRLIFS 22 (26)
T ss_pred chhHHHhhhceEEEE
Confidence 478999999987753
Done!