Query psy10865
Match_columns 667
No_of_seqs 487 out of 1324
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 20:25:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10865.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10865hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 24.2 22 0.0016 20.7 2.1 18 430-447 1-18 (27)
2 d2je8a2 b.1.4.1 (A:784-864) Be 10.0 2.8E+02 0.021 20.3 6.1 38 189-226 26-63 (81)
3 d2h80a1 a.60.1.3 (A:11-81) Del 9.1 31 0.0022 25.2 -0.1 19 627-645 13-31 (71)
4 d2dkya1 a.60.1.3 (A:8-85) Dele 8.2 39 0.0029 25.1 0.1 20 626-645 17-36 (78)
5 d1ea0a1 b.80.4.1 (A:1203-1472) 7.7 1.9E+02 0.014 26.6 5.0 43 166-210 78-120 (270)
6 d1ea0a1 b.80.4.1 (A:1203-1472) 7.5 1.3E+02 0.0097 27.7 3.7 43 51-96 72-114 (270)
7 d1g94a1 b.71.1.1 (A:355-448) B 7.1 63 0.0046 25.2 0.9 10 654-663 38-47 (94)
8 d1hx0a1 b.71.1.1 (A:404-496) A 7.0 63 0.0046 25.1 0.9 9 655-663 38-46 (93)
9 d1jaea1 b.71.1.1 (A:379-471) A 6.7 67 0.0049 25.0 0.8 9 655-663 38-46 (93)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 6.7 1.5E+02 0.011 17.4 2.2 15 425-439 7-21 (30)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.21 E-value=22 Score=20.70 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhhee
Q psy10865 430 FTFGLFFIPIGVGLVYFA 447 (667)
Q Consensus 430 ~~ig~ifi~iGi~~~~~s 447 (667)
+++|+|+..+|.+++.+.
T Consensus 1 ivlgli~~tl~glf~aay 18 (27)
T d2e74g1 1 LVLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CeeeehHHHHHHHHHHHH
Confidence 468999999998887654
No 2
>d2je8a2 b.1.4.1 (A:784-864) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=10.03 E-value=2.8e+02 Score=20.32 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=28.6
Q ss_pred cceEEEeeCCCCCCccccCceeeCCCCeEEEEEEEEEe
Q psy10865 189 YGFKLLLQNPVETPKLAAFGELISPGRESLIVIKPIIN 226 (667)
Q Consensus 189 ~GfkV~IH~p~e~P~~~~~g~~v~pG~~t~i~V~p~~~ 226 (667)
-...|.|-.+.+--..++++|.+.||....|.+.+...
T Consensus 26 ~a~~V~l~~~~~~g~fSDN~FdL~Pg~~~~i~~~~~~~ 63 (81)
T d2je8a2 26 LAKDIFIETPLQGARYSDNFFDLLPGERKKVIITSPRI 63 (81)
T ss_dssp CEEEEEEECSSTTCEESCCSEEECTTCCEEEEEECTTC
T ss_pred eeeeEEEEcCCcCceEecCeEEecCCCEEEEEEECCCC
Confidence 45556666665556778889999999999998887543
No 3
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.09 E-value=31 Score=25.24 Aligned_cols=19 Identities=32% Similarity=0.878 Sum_probs=16.2
Q ss_pred hHHHHHhhCCCCchhheee
Q psy10865 627 DFIVWMRTAALPNFRKLYR 645 (667)
Q Consensus 627 ~fivWMr~aalp~FrKLyg 645 (667)
+=--|+|.|+||-+-.||.
T Consensus 13 eAC~WLraaGFpqYAqlyE 31 (71)
T d2h80a1 13 EACDWLRAAGFPQYAQLYE 31 (71)
T ss_dssp HHHHHHHHTTCHHHHHTTT
T ss_pred HHHHHHHHcCChHHHHHhh
Confidence 4457999999999999985
No 4
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.18 E-value=39 Score=25.09 Aligned_cols=20 Identities=25% Similarity=0.825 Sum_probs=16.6
Q ss_pred hhHHHHHhhCCCCchhheee
Q psy10865 626 EDFIVWMRTAALPNFRKLYR 645 (667)
Q Consensus 626 e~fivWMr~aalp~FrKLyg 645 (667)
-+=--|.|.|+||-+-.||.
T Consensus 17 ~eAC~WLraaGFpqYAqlyE 36 (78)
T d2dkya1 17 KEACDWLRATGFPQYAQLYE 36 (78)
T ss_dssp HHHHHHHHHHTCTTHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHhh
Confidence 34457999999999999985
No 5
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase, C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Probab=7.74 E-value=1.9e+02 Score=26.56 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=35.5
Q ss_pred CCCceEEEEeccccccccCCCcCcceEEEeeCCCCCCccccCcee
Q psy10865 166 RHLGLTVVLDANIEEYFCSSEASYGFKLLLQNPVETPKLAAFGEL 210 (667)
Q Consensus 166 ~~~GL~lvL~~~~~dy~~~~~~~~GfkV~IH~p~e~P~~~~~g~~ 210 (667)
...|++|.|.-+.+||.... ..|=+|.||+|.+.++.......
T Consensus 78 ~~~g~~l~l~G~anDyvGkg--~~gg~i~v~~~~~~~~~~~~~~i 120 (270)
T d1ea0a1 78 AVQGIKLEVMGDANDYVGKG--LSGGTIVVRPTTSSPLETNKNTI 120 (270)
T ss_dssp CBTTEEEEEEEEECSCTTTT--CEEEEEEEECCTTCCCCGGGSEE
T ss_pred ccCccEEEEEecCcchhccc--cccceEEEECCcccCccccccce
Confidence 36789999999999999865 58999999999998877665543
No 6
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase, C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Probab=7.54 E-value=1.3e+02 Score=27.71 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=36.1
Q ss_pred CCCcCccccceEEEeccccceeccCCccccCceEEEeeCCcccccc
Q psy10865 51 RPWGAGRHLGLTVVLDANIEEYFCSSEASYGFKSIVLTTPSLVLKP 96 (667)
Q Consensus 51 r~~~~G~~~gl~~~l~~~~~dy~c~~~~~~Gfk~v~lh~p~~~p~~ 96 (667)
-.+|+=...|++|.|.....||...+- -|=| |.+|.|.+.+..
T Consensus 72 qsfgaf~~~g~~l~l~G~anDyvGkg~--~gg~-i~v~~~~~~~~~ 114 (270)
T d1ea0a1 72 QSLGAFAVQGIKLEVMGDANDYVGKGL--SGGT-IVVRPTTSSPLE 114 (270)
T ss_dssp SSTTTTCBTTEEEEEEEEECSCTTTTC--EEEE-EEEECCTTCCCC
T ss_pred cceeeeccCccEEEEEecCcchhcccc--ccce-EEEECCcccCcc
Confidence 356677789999999999999999886 6889 999999887754
No 7
>d1g94a1 b.71.1.1 (A:355-448) Bacterial alpha-Amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}
Probab=7.05 E-value=63 Score=25.21 Aligned_cols=10 Identities=0% Similarity=0.125 Sum_probs=8.0
Q ss_pred cCCCCCCeeE
Q psy10865 654 YKSGLPAVKI 663 (667)
Q Consensus 654 ~~~~L~~G~Y 663 (667)
|+.+||+|+|
T Consensus 38 ~~TgLPaG~Y 47 (94)
T d1g94a1 38 VQTDMASGQY 47 (94)
T ss_dssp EECCSCSEEE
T ss_pred EEccCCCcee
Confidence 3459999998
No 8
>d1hx0a1 b.71.1.1 (A:404-496) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.02 E-value=63 Score=25.14 Aligned_cols=9 Identities=33% Similarity=0.660 Sum_probs=7.6
Q ss_pred CCCCCCeeE
Q psy10865 655 KSGLPAVKI 663 (667)
Q Consensus 655 ~~~L~~G~Y 663 (667)
+.+||+|+|
T Consensus 38 ~T~LPaG~Y 46 (93)
T d1hx0a1 38 QTGLPGGTY 46 (93)
T ss_dssp ECCSCSEEE
T ss_pred ecCCCCcce
Confidence 459999999
No 9
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=6.67 E-value=67 Score=24.98 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=7.6
Q ss_pred CCCCCCeeE
Q psy10865 655 KSGLPAVKI 663 (667)
Q Consensus 655 ~~~L~~G~Y 663 (667)
+.+||+|+|
T Consensus 38 qTgLPaG~Y 46 (93)
T d1jaea1 38 NTGLPAGTY 46 (93)
T ss_dssp ECCCCSEEE
T ss_pred ecCCCCcce
Confidence 349999999
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.65 E-value=1.5e+02 Score=17.38 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=8.0
Q ss_pred chhHHHHHHHHHHHH
Q psy10865 425 VMPAFFTFGLFFIPI 439 (667)
Q Consensus 425 v~~~~~~ig~ifi~i 439 (667)
|+++--+||++|++|
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444566666654
Done!