RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10865
(667 letters)
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG;
1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Length = 438
Score = 87.5 bits (215), Expect = 2e-18
Identities = 34/198 (17%), Positives = 56/198 (28%), Gaps = 30/198 (15%)
Query: 158 PWRPWGAGRHLGLTVVLDANIEEYFC------SSEASYGFKLLLQNPVETPKLAAFGELI 211
G GL ++LD +EY + G K+ + + E P + G +
Sbjct: 182 RLITMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGV 241
Query: 212 SPGRESLIVIKPIINKSNPSIATSDPELRQCLFNKERALRFYRHYTQRNCILECEANFTL 271
+PG ++ + + P FY Y+ C ++CE + +
Sbjct: 242 APGFQTFVSCQEQRLIYLPPP-------WGDCKATTGDSEFYDTYSITACRIDCETRYLV 294
Query: 272 SFCQCVMYFMPKDRFTRICGKKDTDCADKAKLAMEMRLSQNLSNISKIFNDTTQKPNCGC 331
C C M MP D + +E C C
Sbjct: 295 ENCNCRMVHMPGDAPYCTPEQYKECADPALDFLVEK-----------------DNEYCVC 337
Query: 332 LPGCFSLGYSKTQSSSTL 349
C Y K S +
Sbjct: 338 EMPCNVTRYGKELSMVKI 355
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-06
Identities = 87/617 (14%), Positives = 170/617 (27%), Gaps = 189/617 (30%)
Query: 97 YRDLLP---PAI---LNCANVC-LTRSAL----CAFIVTIRRGIVYWNVRRTLRLDWTLE 145
Y+D+L A +C +V + +S L I+ + V TLRL WTL
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-----AVSGTLRLFWTLL 72
Query: 146 NDFPENAPVDSIPWRPWGAGRHLGLTVVLDANIEEYFCSS-EASYGFKLLLQNPVET--- 201
E ++++ +Y F L +P++T
Sbjct: 73 -SKQEEM-------------------------VQKFVEEVLRINYKF---LMSPIKTEQR 103
Query: 202 -PKLAAFGELISPGRESLIVIKPIINKSNPSIATSDPELRQCLFNKERALRFYRH----- 255
P + + R+ L + K N S +LRQ L A
Sbjct: 104 QPSMMT--RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 256 -------YTQRNCILECEANF-----TLSFCQCVMYFMPKDRFTRICGKKDTDCADKAKL 303
+ ++C+ +F L C + + ++ + D + ++
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDH 219
Query: 304 AMEMRLSQNL--SNISKIFNDTTQKPNCGCL----------------PGCFSLGYSKTQS 345
+ ++L + + + ++ KP CL C L ++ +
Sbjct: 220 SSNIKLRIHSIQAELRRLL---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 346 SSTLAENPRIKKRYL--------AGKSLEYFRMASTSIVTESTPAVAN------------ 385
+ L + + P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 386 --HDEPDIVLNSNQKQNYKPK---ESAFNQQKLPAWQPILTAGTVMPAFFTFGLF----F 436
D N K ES+ N L F +F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNV---------LEPAEYRKMFDRLSVFPPSAH 386
Query: 437 IPIGVGLVYFADNVKE-----LSLDYTHCLSVEQPDKTCAQIINNSRQMNCTCELQFALS 491
IP + + + D +K ++ + + L +QP ++ I + + L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS----------IYLELK 436
Query: 492 EEIEGNVYIYYGLTNFYQNHRRYVKSRDDLQLTAT----HSFNLLQPCTLAMYLSVAPCG 547
++E ++ + + Y + + DDL +S + +L
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSH-------IGHHLK----- 482
Query: 548 AIANSLFSDSF-KIFND----KNKEVPVLRTGIAWPSDKAVKFHNPPGP--DLKEAFKNF 600
I + F +F D + K + AW N G + + K +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQK---IRHDSTAW---------NASGSILNTLQQLKFY 530
Query: 601 AKPTDWKKNIWELDPEN 617
K I + DP+
Sbjct: 531 ------KPYICDNDPKY 541
Score = 46.4 bits (109), Expect = 3e-05
Identities = 72/519 (13%), Positives = 132/519 (25%), Gaps = 167/519 (32%)
Query: 54 GAGRH-LGLTVVLDANIEEYFCSSEASYGFKSIVLT-----TPSLVLKP----YRDLLPP 103
G+G+ + L V L ++ FK L +P VL+ + P
Sbjct: 160 GSGKTWVALDVCLSYKVQCKM-------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 104 AILNCANVCLTRSALCAFIVTIRRGIVYWNVRRTLR-LD--WTLENDFPENAPVDSIPWR 160
+ + + + +RR + L L ++ W
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------------NAKAWN 260
Query: 161 PWGAG-------RHLGLTVVLDANIEEYFCSSEASYGF------KLLLQN--------PV 199
+ R +T L A + S LLL+ P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 200 ETPK-----LAAFGELISPGRESL-----IVIKPIINKSNPSIATSDP-ELRQC-----L 243
E L+ E I G + + + S+ +P E R+ +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 244 FNK-----ERALRFYRHYTQRNCILECEANFT---LSFCQCVMYFM-PKDRFTRICGKKD 294
F L ++ + + + + Y + K
Sbjct: 381 FPPSAHIPTILL----------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 295 TDCADKAKLAMEMRLSQNLSNISKIFNDTTQKPNCGCLPGC-----FS-LGY--SKTQSS 346
K KL E L +++ + +N + +P +S +G+ +
Sbjct: 431 IYLELKVKLENEYALHRSI--VDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 347 STLAENPRIKKRYLAGKSLEYFRMASTSIVTESTPAVANHDEPDIVLNSNQKQNYKPKES 406
+ + +L FR I +ST A+ + + Q + YKP
Sbjct: 488 ERMTLFRMV---FLD------FRFLEQKIRHDSTAWNASGSILNTL---QQLKFYKP--- 532
Query: 407 AFNQQKLPAWQPILTAGTVMPAFFTFGLFFIPIGVGLVYFADN---VKELSLDYTHCLSV 463
Y DN + L L
Sbjct: 533 --------------------------------------YICDNDPKYERLVNAILDFL-- 552
Query: 464 EQPDKTCAQIINNSRQMNCTCELQFALSEEIEGNVYIYY 502
+ + S+ T L+ AL E E I+
Sbjct: 553 ----PKIEENLICSK---YTDLLRIALMAEDEA---IFE 581
Score = 36.0 bits (82), Expect = 0.045
Identities = 64/400 (16%), Positives = 105/400 (26%), Gaps = 142/400 (35%)
Query: 14 EDEKDTSELNTTVHYPSVDWTLENDFPENAPVDSIPWRPWGAGRHL--------GLTV-- 63
E L ++ +WT +D N + + R L L V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLL 251
Query: 64 -VLDANIEEYF---C-----SSEASYGFKSIVLTTPSLVLKPYRDLLPPA--------IL 106
V +A F C + TT + L + L P L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 107 NCANVCLTRSA------LCAFIVT-IRRGIVYWN---------VRRTLR--LDWTLEND- 147
+C L R + I IR G+ W+ + + L+ LE
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAE 370
Query: 148 ----------FPENAPVDSIPW----RPWGA----------------------------- 164
FP +A IP W
Sbjct: 371 YRKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 165 --GRHLGLTVVLDAN-------IEEY-----FCSSEAS------YGFKLL---LQNPVET 201
+L L V L+ ++ Y F S + Y + + L+N
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 202 PKLAAFGELISPGRESLIVIKPIINKSNPSIATSDPELRQCLFNKERALRFYRHYTQRNC 261
++ F + R + K I + S A+ + N + L+FY+ Y N
Sbjct: 488 ERMTLFRMVFLDFR--FLEQK-IRHDSTAWNASGS------ILNTLQQLKFYKPYICDND 538
Query: 262 -------------ILECEANFTLSFCQCVMY--FMPKDRF 286
+ + E N S ++ M +D
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 8e-05
Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 61/194 (31%)
Query: 68 NIEEYFCSSEASYGFKSIVLTTPSLVLKPYRDLLPPAILNCANVC--LTRSALCAFIVTI 125
N ++YF E + + T Y L+ I A L R+ L A V
Sbjct: 165 NTDDYF--EE----LRDLYQT--------YHVLVGDLIKFSAETLSELIRTTLDAEKV-F 209
Query: 126 RRGIVYWNVRRTLRLDWTLENDFPENAPVDSIPWRPWGAGRHLGLTVVLDANIEEYFCSS 185
+G+ N+ L+W LEN P N P D ++Y S
Sbjct: 210 TQGL---NI-----LEW-LEN--PSNTP---------------------D---KDYLLSI 234
Query: 186 EASYGFKLLLQ--NPVETPKLAAF--GELISPGRESLIVIKPIINKSNPSIATSDPELRQ 241
S ++Q + V T KL F GEL S + + + ++ + S
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 242 CLFNKERALR--FY 253
+ +A+ F+
Sbjct: 295 ---SVRKAITVLFF 305
Score = 43.1 bits (101), Expect = 4e-04
Identities = 70/404 (17%), Positives = 117/404 (28%), Gaps = 127/404 (31%)
Query: 336 FSLGYSKTQSSSTLAENPRIKKRYLAGKSLEYFR---MASTSI--VTESTPAVANHDEPD 390
F LGY SS + + + + L F + I + ++
Sbjct: 64 F-LGYV----SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ---ENDTT 115
Query: 391 IVLNSNQKQNY------------KPKESAFNQQKLPAWQPILTAGTVMPAFFT-FGLFFI 437
+V +NY K SA A + G FG
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSAL----FRA----VGEGNA--QLVAIFG---- 161
Query: 438 PIGVG--LVYFADNVKEL-SL--DYTHCLSVEQPDKTCAQIINNSRQMNCTCELQFALSE 492
G G YF +EL L Y + +I S + L +
Sbjct: 162 --GQGNTDDYF----EELRDLYQTYHVLV---------GDLIKFSAET-----LSELIRT 201
Query: 493 EIEGNVYIYYGLTNFYQ--NHRRYVKSRDDLQLTATHSFNLLQPCTLAMYLSVAPCGAIA 550
++ GL N + + +D L L+ S L+ LA Y+ A
Sbjct: 202 TLDAEKVFTQGL-NILEWLENPSNTPDKDYL-LSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 551 NSLFSDSFKIFNDKNKEVPVLRTGIA----WPS-----DKAVK--FH------------N 587
K ++ + V IA W S KA+ F +
Sbjct: 260 PGELRSYLKGATGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 588 PPGPDLKEAFKN-FAKPT-----------DWKKNIWELDPENPDN--------NGFQNED 627
P L+++ +N P+ + + + + P NG +N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-- 376
Query: 628 FIVWMRTAALPNFRKLYRRVNHEVEGYK--SGLPAVKI---KKK 666
+V + P + LY +N + K SGL +I ++K
Sbjct: 377 LVV----SGPP--QSLY-GLNLTLRKAKAPSGLDQSRIPFSERK 413
Score = 41.6 bits (97), Expect = 0.001
Identities = 27/130 (20%), Positives = 40/130 (30%), Gaps = 34/130 (26%)
Query: 88 TTP--SLVLKPYRDLLPPAILNCANVCLTRSAL-------------CAFIVTIRRGIVYW 132
+P S +L P DL+ L NV + +I IV
Sbjct: 424 ASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 133 NVRRTLRLDWTLENDFPENAPVDSIPWRPWGAGRHLGLTVVLDANIE----------EYF 182
+R L + W F +D +G G GL V+ N +
Sbjct: 483 IIR--LPVKWETTTQFKATHILD------FGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Query: 183 CSSEASYGFK 192
+ + YGFK
Sbjct: 535 INPDDDYGFK 544
Score = 38.1 bits (88), Expect = 0.010
Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 31/99 (31%)
Query: 4 PVAAATFLDLEDEKDTSELNTTV---------HYPSVDWTLENDFPENAPVDSIPWRPWG 54
PV D D D L+ ++ P V W F +D +G
Sbjct: 458 PV-----YDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQFKATHILD------FG 505
Query: 55 AGRHLGLTVVLDANIE----------EYFCSSEASYGFK 83
G GL V+ N + + + YGFK
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.35
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 10/34 (29%)
Query: 351 ENPRIKKRYLAGKSLEYFRMASTSIVTESTPAVA 384
E +KK L SL+ + +S PA+A
Sbjct: 18 EKQALKK--LQA-SLKLY-------ADDSAPALA 41
Score = 28.8 bits (63), Expect = 3.6
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 397 QKQNYKPKESAFNQQKL--PAWQPILT-AGTV 425
+KQ K +++ KL P L T+
Sbjct: 18 EKQALKKLQASL---KLYADDSAPALAIKATM 46
Score = 28.0 bits (61), Expect = 7.3
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 24/49 (48%)
Query: 135 RRTLRLDWTLENDF----PENAPVDSIPWRPWGAGRHLGLTVVLDANIE 179
++ L+ L+ ++AP + + A +E
Sbjct: 19 KQALK---KLQASLKLYADDSAP-----------------ALAIKATME 47
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 29.5 bits (67), Expect = 3.1
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 414 PAWQPILTAGTVMPAFFTFGLFFIPIGV-----GLVYFAD 448
P+W P +G + F P GV G VY
Sbjct: 2 PSWSPTQASGQTVLPFTGIDFRLSPSGVAVDSAGNVYVTS 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.423
Gapped
Lambda K H
0.267 0.0391 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,208,607
Number of extensions: 603328
Number of successful extensions: 976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 964
Number of HSP's successfully gapped: 14
Length of query: 667
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 567
Effective length of database: 3,909,693
Effective search space: 2216795931
Effective search space used: 2216795931
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.2 bits)