RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10865
         (667 letters)



>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 118

 Score = 27.8 bits (61), Expect = 1.9
 Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 6/90 (6%)

Query: 227 KSNPSIATSDPELRQCLFNKERALRFYRHYTQRNCILECEANFTLSFCQCVMYFMPKDRF 286
           ++  +   + PE+      +                L   A   +S  +     +   R 
Sbjct: 2   RTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRS 61

Query: 287 TR------ICGKKDTDCADKAKLAMEMRLS 310
           T       +     ++      +A++ R++
Sbjct: 62  TGVVIGGVVVAPIASELILPIAVAVQNRIT 91


>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
           {Bacteriophage PHI-6 [TaxId: 10879]}
          Length = 664

 Score = 26.9 bits (59), Expect = 9.7
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 590 GPDLKEAFKNFAKPTDWKKNIWELDPE-NPDNNGFQNEDFIVWMRTAALPNFRKLYRRVN 648
            P L    K+      +  + W+   E    +    ++  + W +  AL    +L+  + 
Sbjct: 419 APHLNSRIKDMPSACRFLDSYWQGHEEIRQISKS--DDAMLGWTKGRALVGGHRLFEMLK 476

Query: 649 HEVEGYKSGLPAVKIKKKE 667
              EG  +  P +KI  + 
Sbjct: 477 ---EGKVNPSPYMKISYEH 492


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,557,775
Number of extensions: 122717
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 3
Length of query: 667
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 576
Effective length of database: 1,158,166
Effective search space: 667103616
Effective search space used: 667103616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)