BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10867
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 54/298 (18%)
Query: 56 GKPMIQAWPVNSQEKAQLRLICPGR---ISSMQASPDAAYIAVSIETKL-HMWQISSGRL 111
G P Q+ P + L+ G +SS++ SP+ ++A S KL +W G+
Sbjct: 4 GSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 112 LATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA------------- 158
T S H I+ V WS+DSN +V+ +D T+ +W +S C +T+
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 159 ---FGIPGSSGKGV----TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKI 211
+ GS + V + L HS PV+ V ++ G S + S S+D C+I
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRI 181
Query: 212 FDLCTGEDLLSLILDTR--LTCVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRD 263
+D +G+ L +LI D ++ V F I T + +K + CL+
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT------ 235
Query: 264 HHIQDSTSNPDFIGH--EKQVTSLSCSITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
+ GH EK + S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 236 -----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 71
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 129/300 (43%), Gaps = 58/300 (19%)
Query: 56 GKPMIQAWPVNSQEKAQLRLICPGR---ISSMQASPDAAYIAVSIETKL-HMWQISSGRL 111
G Q+ P + L+ G +SS++ SP+ ++A S KL +W G+
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 112 LATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA------------- 158
T S H I+ V WS+DSN +V+ +D T+ +W +S C +T+
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 159 ---FGIPGSSGKGV------TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTC 209
+ GS + V TG + L HS PV+ V ++ G S + S S+D C
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLC 179
Query: 210 KIFDLCTGEDLLSLILDTR--LTCVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRT 261
+I+D +G+ L +LI D ++ V F I T + +K + CL+
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---- 235
Query: 262 RDHHIQDSTSNPDFIGH--EKQVTSLSCSITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
+ GH EK + S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 236 -------------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 71
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 129/300 (43%), Gaps = 58/300 (19%)
Query: 56 GKPMIQAWPVNSQEKAQLRLICPGR---ISSMQASPDAAYIAVSIETKL-HMWQISSGRL 111
G Q+ P + L+ G +SS++ SP+ ++A S KL +W G+
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 112 LATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA------------- 158
T S H I+ V WS+DSN +V+ +D T+ +W +S C +T+
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 159 ---FGIPGSSGKGV------TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTC 209
+ GS + V TG + L HS PV+ V ++ G S + S S+D C
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLC 179
Query: 210 KIFDLCTGEDLLSLILDTR--LTCVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRT 261
+I+D +G+ L +LI D ++ V F I T + +K + CL+
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---- 235
Query: 262 RDHHIQDSTSNPDFIGH--EKQVTSLSCSITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
+ GH EK + S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 236 -------------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 71
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG+ L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC--LK 146
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 147 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 247
Query: 288 SIT-GITLLSSSADETLKIWHTISRQCLRTIQ 318
S+T G ++S S D + IW+ +++ ++ +Q
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG + L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLK 146
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 147 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 247
Query: 288 SITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 48/214 (22%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T + H + ++ VK+S + ++ D I +W G K ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG------------AYDGKFEKTIS 65
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
G H L ++ V S + + S S D+T KI+D+ +G+ L +L +
Sbjct: 66 G----------HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 231 -CVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
C F+ + I G+ + ++ + CL+ +P H V+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------AHSDPVS 156
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++ + G ++SSS D +IW T S QCL+T+
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG+ L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC--LK 146
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 147 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 247
Query: 288 SIT-GITLLSSSADETLKIWHTISRQCLRTIQ 318
S+T G ++S S D + IW+ +++ ++ +Q
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 58/295 (19%)
Query: 61 QAWPVNSQEKAQLRLICPGR---ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATAS 116
Q+ P + L+ G +SS++ SP+ ++A S KL +W G+ T S
Sbjct: 8 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 67
Query: 117 SHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA----------------FG 160
H I+ V WS+DSN +V+ +D T+ +W +S C +T+
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 161 IPGSSGKGV------TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDL 214
+ GS + V TG + L HS PV+ V ++ G S + S S+D C+I+D
Sbjct: 128 VSGSFDESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDT 183
Query: 215 CTGEDLLSLILDTR--LTCVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHI 266
+G+ L +LI D ++ V F I T + +K + CL+
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--------- 234
Query: 267 QDSTSNPDFIGH--EKQVTSLSCSITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
+ GH EK + S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 235 --------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 70
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG + L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLK 146
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 147 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 247
Query: 288 SITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T + H + ++ VK+S + ++ + D I +W G K ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTIS 65
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
G H L ++ V S + + S S D+T KI+D+ +G+ L +L +
Sbjct: 66 G----------HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 231 -CVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
C F+ + I G+ + ++ + CL+ +P H V+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------AHSDPVS 156
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++ + G ++SSS D +IW T S QCL+T+
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG + L
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLK 139
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 140 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 240
Query: 288 SIT-GITLLSSSADETLKIWHTISRQCLRTIQ 318
S+T G ++S S D + IW+ +++ ++ +Q
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T + H + ++ VK+S + ++ + D I +W G K ++
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTIS 58
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
G H L ++ V S + + S S D+T KI+D+ +G+ L +L +
Sbjct: 59 G----------HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Query: 231 -CVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
C F+ + I G+ + ++ + CL+ +P H V+
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------AHSDPVS 149
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++ + G ++SSS D +IW T S QCL+T+
Sbjct: 150 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 61
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG + L
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLK 160
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 161 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 261
Query: 288 SITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T + H + ++ VK+S + ++ + D I +W G K ++
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTIS 79
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
G H L ++ V S + + S S D+T KI+D+ +G+ L +L +
Sbjct: 80 G----------HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Query: 231 -CVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
C F+ + I G+ + ++ + CL+ +P H V+
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------AHSDPVS 170
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++ + G ++SSS D +IW T S QCL+T+
Sbjct: 171 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 82
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG + L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLK 146
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 147 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 247
Query: 288 SITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T + H + ++ VK+S + ++ + D I +W G K ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTIS 65
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
G H L ++ V S + + S S D+T KI+D+ +G+ L +L +
Sbjct: 66 G----------HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 231 -CVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
C F+ + I G+ + ++ + CL+ +P H V+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------AHSDPVS 156
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++ + G ++SSS D +IW T S QCL+T+
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 58/295 (19%)
Query: 61 QAWPVNSQEKAQLRLICPGR---ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATAS 116
Q+ P + L+ G +SS++ SP+ ++A S KL +W G+ T S
Sbjct: 4 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 63
Query: 117 SHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA----------------FG 160
H I+ V WS+DSN +V+ +D T+ +W +S C +T+
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 161 IPGSSGKGV------TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDL 214
+ GS + V TG + L HS PV+ V ++ G S + S S+D C+I+D
Sbjct: 124 VSGSFDESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDT 179
Query: 215 CTGEDLLSLILDTR--LTCVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHI 266
+G+ L +LI D ++ V F I T + +K + CL+
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--------- 230
Query: 267 QDSTSNPDFIGH--EKQVTSLSCSITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
+ GH EK + S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 231 --------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 66
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG + L
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLK 142
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 143 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 243
Query: 288 SITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T + H + ++ VK+S + ++ + D I +W G K ++
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTIS 61
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
G H L ++ V S + + S S D+T KI+D+ +G+ L +L +
Sbjct: 62 G----------HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Query: 231 -CVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
C F+ + I G+ + ++ + CL+ +P H V+
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------AHSDPVS 152
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++ + G ++SSS D +IW T S QCL+T+
Sbjct: 153 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 64
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG + L
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLK 165
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 166 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 266
Query: 288 SITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T + H + ++ VK+S + ++ + D I +W G K ++
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTIS 84
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
G H L ++ V S + + S S D+T KI+D+ +G+ L +L +
Sbjct: 85 G----------HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 231 -CVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
C F+ + I G+ + ++ + CL+ +P H V+
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------AHSDPVS 175
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++ + G ++SSS D +IW T S QCL+T+
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 87
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 58/295 (19%)
Query: 61 QAWPVNSQEKAQLRLICPGR---ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATAS 116
Q+ P + L+ G +SS++ SP+ ++A S KL +W G+ T S
Sbjct: 3 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 117 SHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA----------------FG 160
H I+ V WS+DSN +V+ +D T+ +W +S C +T+
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 161 IPGSSGKGV------TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDL 214
+ GS + V TG + L HS PV+ V ++ G S + S S+D C+I+D
Sbjct: 123 VSGSFDESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDT 178
Query: 215 CTGEDLLSLILDTR--LTCVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHI 266
+G+ L +LI D ++ V F I T + +K + CL+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--------- 229
Query: 267 QDSTSNPDFIGH--EKQVTSLSCSIT-GITLLSSSADETLKIWHTISRQCLRTIQ 318
+ GH EK + S+T G ++S S D + IW+ +++ ++ +Q
Sbjct: 230 --------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+SS++ SP+ ++A S KL +W G+ T S H I+ V WS+DSN +V+ +
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 140 DGTICVWQLSRLICKQTVA----------------FGIPGSSGKGV------TGLTEPLH 177
D T+ +W +S C +T+ + GS + V TG + L
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLK 167
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR--LTCVAFD 235
HS PV+ V ++ G S + S S+D C+I+D +G+ L +LI D ++ V F
Sbjct: 168 TLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 236 GTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGH--EKQVTSLSC 287
I T + +K + CL+ + GH EK +
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKCLKT-----------------YTGHKNEKYCIFANF 268
Query: 288 SITGIT-LLSSSADETLKIWHTISRQCLRTIQ 318
S+TG ++S S D + IW+ +++ ++ +Q
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T + H + ++ VK+S + ++ + D I +W G K ++
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------------AYDGKFEKTIS 86
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
G H L ++ V S + + S S D+T KI+D+ +G+ L +L +
Sbjct: 87 G----------HKLGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 231 -CVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
C F+ + I G+ + ++ + CL+ +P H V+
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----------------AHSDPVS 177
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++ + G ++SSS D +IW T S QCL+T+
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 89
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 58/295 (19%)
Query: 61 QAWPVNSQEKAQLRLICPGR---ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATAS 116
Q+ P + L+ G +SS++ SP+ ++A S KL +W G+ T S
Sbjct: 3 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 117 SHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA----------------FG 160
H I+ V WS+DSN +V+ +D T+ +W +S C +T+
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 161 IPGSSGKGV------TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDL 214
+ GS + V TG + L HS PV+ V ++ G S + S S+D C+I+D
Sbjct: 123 VSGSFDESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDT 178
Query: 215 CTGEDLLSLILDTR--LTCVAFDGTEDNIYMGTSEGVIKSF------CLRQVPRTRDHHI 266
+G+ L +LI D ++ V F I T + +K + CL+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--------- 229
Query: 267 QDSTSNPDFIGH--EKQVTSLSCSIT-GITLLSSSADETLKIWHTISRQCLRTIQ 318
+ GH EK + S+T G ++S S D + IW+ +++ ++ +Q
Sbjct: 230 --------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HK 320
GH K V+S+ S G L SSSAD+ +KIW + +TI HK
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 127/313 (40%), Gaps = 49/313 (15%)
Query: 5 NEVAFSYDGSGAISVWEPKGGTLL----MSYKGASVLSPHSMCLLGNDYVLGVEKGKPMI 60
N +A + D S + +W G +L M G + S+ + L V +
Sbjct: 37 NVLAVALDNS--VYLWSASSGDILQLLQMEQPGEYI---SSVAWIKEGNYLAVGTSSAEV 91
Query: 61 QAWPVNSQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQIS---SGRLLATASS 117
Q W V Q++ + R+ S+ + +YI S H+ + +AT S
Sbjct: 92 QLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 148
Query: 118 HYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLH 177
H Q + ++W+ D + +GG D + VW P + G+G G PL
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVW---------------PSAPGEG--GWV-PLQ 190
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASV---SHDRTCKIFDLCTGEDLLSLILDTRLTCVAF 234
+QH V V +S V + + DR +I+++C+G L ++ +++ + +
Sbjct: 191 TFTQHQGAVKAVAWCPW--QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 248
Query: 235 DGTEDNIYMGTSEGVIKS-FCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGIT 293
+ G G ++ + + P + GH +V SL+ S G T
Sbjct: 249 SPHYKELISG--HGFAQNQLVIWKYPTM--------AKVAELKGHTSRVLSLTMSPDGAT 298
Query: 294 LLSSSADETLKIW 306
+ S++ADETL++W
Sbjct: 299 VASAAADETLRLW 311
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 127/313 (40%), Gaps = 49/313 (15%)
Query: 5 NEVAFSYDGSGAISVWEPKGGTLL----MSYKGASVLSPHSMCLLGNDYVLGVEKGKPMI 60
N +A + D S + +W G +L M G + S+ + L V +
Sbjct: 128 NVLAVALDNS--VYLWSASSGDILQLLQMEQPGEYI---SSVAWIKEGNYLAVGTSSAEV 182
Query: 61 QAWPVNSQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQIS---SGRLLATASS 117
Q W V Q++ + R+ S+ + +YI S H+ + +AT S
Sbjct: 183 QLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 239
Query: 118 HYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLH 177
H Q + ++W+ D + +GG D + VW P + G+G G PL
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVW---------------PSAPGEG--GWV-PLQ 281
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASV---SHDRTCKIFDLCTGEDLLSLILDTRLTCVAF 234
+QH V V +S V + + DR +I+++C+G L ++ +++ + +
Sbjct: 282 TFTQHQGAVKAVAWCPW--QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 339
Query: 235 DGTEDNIYMGTSEGVIKS-FCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGIT 293
+ G G ++ + + P + GH +V SL+ S G T
Sbjct: 340 SPHYKELISG--HGFAQNQLVIWKYPTM--------AKVAELKGHTSRVLSLTMSPDGAT 389
Query: 294 LLSSSADETLKIW 306
+ S++ADETL++W
Sbjct: 390 VASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 127/313 (40%), Gaps = 49/313 (15%)
Query: 5 NEVAFSYDGSGAISVWEPKGGTLL----MSYKGASVLSPHSMCLLGNDYVLGVEKGKPMI 60
N +A + D S + +W G +L M G + S+ + L V +
Sbjct: 117 NVLAVALDNS--VYLWSASSGDILQLLQMEQPGEYI---SSVAWIKEGNYLAVGTSSAEV 171
Query: 61 QAWPVNSQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQIS---SGRLLATASS 117
Q W V Q++ + R+ S+ + +YI S H+ + +AT S
Sbjct: 172 QLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 228
Query: 118 HYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLH 177
H Q + ++W+ D + +GG D + VW P + G+G G PL
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVW---------------PSAPGEG--GWV-PLQ 270
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASV---SHDRTCKIFDLCTGEDLLSLILDTRLTCVAF 234
+QH V V +S V + + DR +I+++C+G L ++ +++ + +
Sbjct: 271 TFTQHQGAVKAVAWCPW--QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 328
Query: 235 DGTEDNIYMGTSEGVIKS-FCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGIT 293
+ G G ++ + + P + GH +V SL+ S G T
Sbjct: 329 SPHYKELISG--HGFAQNQLVIWKYPTM--------AKVAELKGHTSRVLSLTMSPDGAT 378
Query: 294 LLSSSADETLKIW 306
+ S++ADETL++W
Sbjct: 379 VASAAADETLRLW 391
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 64/234 (27%)
Query: 132 NFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTL 191
N +++ D T+ W+L+ K FG+P S KG HS V TL
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQK----FGVPVRSFKG-------------HSHIVQDCTL 73
Query: 192 SKLGAKSRVASVSHDRTCKIFDLCTGE----------DLLSLILDTRLTCVAFDGTEDNI 241
+ GA + S S D+T +++D+ TGE D++S+ +D + + + + I
Sbjct: 74 TADGAYA--LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 242 YMGTSEGVIKSFCL-------------RQVPRTR-------------DHHIQDSTSN--- 272
+ T IK CL R VP + D ++ N
Sbjct: 132 KVWT----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 273 --PDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVL 324
DFIGH + +L+ S G + S+ D + +W+ +++ + T+ + V
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 67 SQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRL-------LATASSHY 119
+ +KA L + S+ SP+ ++A + T + ++ + L A S
Sbjct: 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 120 QPITI-VKWSADSNFIVTGGEDGTICVWQ 147
+P + + WSAD + G D I VWQ
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS 149
I+ + + W ++ ++ A H I + S D I + G+DG I +W L+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 64/234 (27%)
Query: 132 NFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTL 191
N +++ D T+ W+L+ K FG+P S KG HS V TL
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQK----FGVPVRSFKG-------------HSHIVQDCTL 73
Query: 192 SKLGAKSRVASVSHDRTCKIFDLCTGE----------DLLSLILDTRLTCVAFDGTEDNI 241
+ GA + S S D+T +++D+ TGE D++S+ +D + + + + I
Sbjct: 74 TADGAYA--LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 242 YMGTSEGVIKSFCL-------------RQVPRTR-------------DHHIQDSTSN--- 272
+ T IK CL R VP + D ++ N
Sbjct: 132 KVWT----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 273 --PDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVL 324
DFIGH + +L+ S G + S+ D + +W+ +++ + T+ + V
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 67 SQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRL-------LATASSHY 119
+ +KA L + S+ SP+ ++A + T + ++ + L A S+
Sbjct: 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAA 285
Query: 120 QPITI-VKWSADSNFIVTGGEDGTICVWQL 148
+P + + WSAD + G D I VWQ+
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS 149
I+ + + W ++ ++ A H I + S D I + G+DG I +W L+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 64/234 (27%)
Query: 132 NFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTL 191
N +++ D T+ W+L+ K FG+P S KG HS V TL
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQK----FGVPVRSFKG-------------HSHIVQDCTL 73
Query: 192 SKLGAKSRVASVSHDRTCKIFDLCTGE----------DLLSLILDTRLTCVAFDGTEDNI 241
+ GA + S S D+T +++D+ TGE D++S+ +D + + + + I
Sbjct: 74 TADGAYA--LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 242 YMGTSEGVIKSFCL-------------RQVPRTR-------------DHHIQDSTSN--- 272
+ T IK CL R VP + D ++ N
Sbjct: 132 KVWT----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 273 --PDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVL 324
DFIGH + +L+ S G + S+ D + +W+ +++ + T+ + V
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 67 SQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRL-------LATASSHY 119
+ +KA L + S+ SP+ ++A + T + ++ + L A S
Sbjct: 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 120 QPITI-VKWSADSNFIVTGGEDGTICVWQL 148
+P + + WSAD + G D I VWQ+
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS 149
I+ + + W ++ ++ A H I + S D I + G+DG I +W L+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 64/234 (27%)
Query: 132 NFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTL 191
N +++ D T+ W+L+ K FG+P S KG HS V TL
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQK----FGVPVRSFKG-------------HSHIVQDCTL 73
Query: 192 SKLGAKSRVASVSHDRTCKIFDLCTGE----------DLLSLILDTRLTCVAFDGTEDNI 241
+ GA + S S D+T +++D+ TGE D++S+ +D + + + + I
Sbjct: 74 TADGAYA--LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 242 YMGTSEGVIKSFCL-------------RQVPRTR-------------DHHIQDSTSN--- 272
+ T IK CL R VP + D ++ N
Sbjct: 132 KVWT----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 273 --PDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVL 324
DFIGH + +L+ S G + S+ D + +W+ +++ + T+ + V
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 67 SQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRL-------LATASSHY 119
+ +KA L + S+ SP+ ++A + T + ++ + L A S
Sbjct: 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 120 QPITI-VKWSADSNFIVTGGEDGTICVWQL 148
+P + + WSAD + G D I VWQ+
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS 149
I+ + + W ++ ++ A H I + S D I + G+DG I +W L+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 64/234 (27%)
Query: 132 NFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTL 191
N +++ D T+ W+L+ K FG+P S KG HS V TL
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQK----FGVPVRSFKG-------------HSHIVQDCTL 67
Query: 192 SKLGAKSRVASVSHDRTCKIFDLCTGE----------DLLSLILDTRLTCVAFDGTEDNI 241
+ GA + S S D+T +++D+ TGE D++S+ +D + + + + I
Sbjct: 68 TADGAYA--LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 242 YMGTSEGVIKSFCL-------------RQVPRTR-------------DHHIQDSTSN--- 272
+ T IK CL R VP + D ++ N
Sbjct: 126 KVWT----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 273 --PDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVL 324
DFIGH + +L+ S G + S+ D + +W+ +++ + T+ + V
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 235
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 67 SQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRL-------LATASSHY 119
+ +KA L + S+ SP+ ++A + T + ++ + L A S
Sbjct: 220 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 279
Query: 120 QPITI-VKWSADSNFIVTGGEDGTICVWQL 148
+P + + WSAD + G D I VWQ+
Sbjct: 280 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS 149
I+ + + W ++ ++ A H I + S D I + G+DG I +W L+
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 122/311 (39%), Gaps = 36/311 (11%)
Query: 7 VAFSYDGSGAISVWEPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKPMIQAWPVN 66
V S I VW+ + G + KG + S + + +L I+ W
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 67 SQEKAQLRLICPGRISSMQASPDAAYI-AVSIETKLHMWQISSGRLLATASSHYQPITIV 125
E + +SS+ P+ +I + S + + MW++ +G + T + H + + +V
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240
Query: 126 KWSADSNFIVTGGEDGTICVWQLSRLICK----------QTVAFGIPGSSGKGVTGLTEP 175
+ + D I + D T+ VW ++ CK + +++ P SS ++ T
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA-PESSYSSISEATGS 299
Query: 176 LHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFD 235
KS P + S S D+T K++D+ TG L++L V D
Sbjct: 300 ETKKSGKPGPF-------------LLSGSRDKTIKMWDVSTGMCLMTL--------VGHD 338
Query: 236 GTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLL 295
+ + I S + R D+ ++ HE VTSL T ++
Sbjct: 339 NWVRGVLFHSGGKFILSCADDKTLRVWDY--KNKRCMKTLNAHEHFVTSLDFHKTAPYVV 396
Query: 296 SSSADETLKIW 306
+ S D+T+K+W
Sbjct: 397 TGSVDQTVKVW 407
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 180 SQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDT-RLTCVAFDGTE 238
S H PVT V + S + S S D T K++D TG+ +L T + ++FD +
Sbjct: 105 SGHRSPVTRVIFHPVF--SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 239 DNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSS 298
+ +++ IK + + R H GH+ V+S+S G ++S+S
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMH-----------GHDHNVSSVSIMPNGDHIVSAS 211
Query: 299 ADETLKIWHTISRQCLRTI 317
D+T+K+W + C++T
Sbjct: 212 RDKTIKMWEVQTGYCVKTF 230
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 39/208 (18%)
Query: 116 SSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEP 175
S H P+T V + + +V+ ED TI VW ++T+ KG
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL---------KG------- 148
Query: 176 LHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLI-LDTRLTCVAF 234
H+ V ++ G +AS S D T K++D E + ++ D ++ V+
Sbjct: 149 ------HTDSVQDISFDHSG--KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 235 DGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITL 294
D+I + + IK + +Q F GH + V + + G +
Sbjct: 201 MPNGDHIVSASRDKTIKMW-----------EVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249
Query: 295 LSSSADETLKIWHTISRQC---LRTIQH 319
S S D+T+++W +++C LR +H
Sbjct: 250 ASCSNDQTVRVWVVATKECKAELREHRH 277
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 101 LHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQ 147
L +W + R + T ++H +T + + + ++VTG D T+ VW+
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 140/356 (39%), Gaps = 65/356 (18%)
Query: 7 VAFSYDG--------SGAISVWEPKGGTLLMSYKGASVLSPHSMCLLG-----NDYVLGV 53
VAFS DG + +W + G LL + G HS + G + +
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG------HSSSVWGVAFSPDGQTIAS 74
Query: 54 EKGKPMIQAWPVNSQEKAQLRLICPGRISSMQA---SPDAAYIAVSIETK-LHMWQISSG 109
++ W N QL G SS++ SPD IA + + K + +W +G
Sbjct: 75 ASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 129
Query: 110 RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQ-----LSRLICKQTVAFGIPGS 164
+LL T + H + V +S D I + +D T+ +W L L + +G+ S
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 189
Query: 165 -SGKGVTGLTEPLHVK------------SQHSLPVTHVTLSKLGAKSRVASVSHDRTCKI 211
G+ + ++ VK + HS V V S G +AS S D+T K+
Sbjct: 190 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT--IASASDDKTVKL 247
Query: 212 FDLCTGEDLLSLI-LDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR-QVPRTRDHHIQDS 269
++ G+ L +L + + VAF I + + +K + Q+ +T
Sbjct: 248 WNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT-------- 298
Query: 270 TSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVLG 325
GH V ++ S G T+ S+S D+T+K+W+ + H V G
Sbjct: 299 -----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWG 349
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 143/352 (40%), Gaps = 57/352 (16%)
Query: 7 VAFSYDG--------SGAISVWEPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKP 58
VAFS DG + +W + G LL + G S S + + +
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDK 243
Query: 59 MIQAWPVNSQEKAQLRLICPGRISSMQA---SPDAAYIAVSIETK-LHMWQISSGRLLAT 114
++ W N QL G SS+ PD IA + + K + +W +G+LL T
Sbjct: 244 TVKLWNRN----GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQT 298
Query: 115 ASSHYQPITIVKWSADSNFIVTGGEDGTICVWQ-----LSRLICKQTVAFGIPGS-SGKG 168
+ H + V +S D I + +D T+ +W L L + +G+ S G+
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQT 358
Query: 169 VTGLTEPLHVK------------SQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCT 216
+ ++ VK + HS V V S G +AS S D+T K+++
Sbjct: 359 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT--IASASDDKTVKLWNR-N 415
Query: 217 GEDLLSLI-LDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR-QVPRTRDHHIQDSTSNPD 274
G+ L +L + + VAF + I + + +K + Q+ +T
Sbjct: 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT------------- 462
Query: 275 FIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HKGPVLG 325
GH V ++ S G T+ S+S D+T+K+W+ + Q L+T+ H V G
Sbjct: 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 513
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 141/357 (39%), Gaps = 67/357 (18%)
Query: 7 VAFSYDG--------SGAISVWEPKGGTLLMSYKGASVLSPHSMCLLG-----NDYVLGV 53
VAFS DG + +W + G LL + G HS + G + +
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG------HSSSVWGVAFSPDGQTIAS 156
Query: 54 EKGKPMIQAWPVNSQEKAQLRLICPGRISSMQA---SPDAAYIAVSIETK-LHMWQISSG 109
++ W N QL G SS+ SPD IA + + K + +W +G
Sbjct: 157 ASDDKTVKLWNRN----GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNG 211
Query: 110 RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICK--------------- 154
+LL T + H + V +S D I + +D T+ +W + + +
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR 271
Query: 155 ---QTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKI 211
QT+A + K + L + HS V V S G +AS S D+T K+
Sbjct: 272 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT--IASASDDKTVKL 329
Query: 212 FDLCTGEDLLSLI-LDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR-QVPRTRDHHIQDS 269
++ G+ L +L + + VAF I + + +K + Q+ +T
Sbjct: 330 WNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-------- 380
Query: 270 TSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HKGPVLG 325
GH V ++ S G T+ S+S D+T+K+W+ + Q L+T+ H V G
Sbjct: 381 -----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 431
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 132/327 (40%), Gaps = 52/327 (15%)
Query: 29 MSYKGASVLSPHSMCLLG-----NDYVLGVEKGKPMIQAWPVNSQEKAQLRLICPGRISS 83
M K + L HS + G + + ++ W N QL G SS
Sbjct: 4 MGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSS 59
Query: 84 MQA---SPDAAYIAVSIETK-LHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+ SPD IA + + K + +W +G+LL T + H + V +S D I + +
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 118
Query: 140 DGTICVWQ-----LSRLICKQTVAFGIPGS-SGKGVTGLTEPLHVK------------SQ 181
D T+ +W L L + +G+ S G+ + ++ VK +
Sbjct: 119 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 178
Query: 182 HSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLI-LDTRLTCVAFDGTEDN 240
HS V V S G +AS S D+T K+++ G+ L +L + + VAF
Sbjct: 179 HSSSVWGVAFSPDGQT--IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 241 IYMGTSEGVIKSFCLR-QVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSA 299
I + + +K + Q+ +T GH V ++ G T+ S+S
Sbjct: 236 IASASDDKTVKLWNRNGQLLQT-------------LTGHSSSVNGVAFRPDGQTIASASD 282
Query: 300 DETLKIWHTISRQCLRTIQ-HKGPVLG 325
D+T+K+W+ + Q L+T+ H V G
Sbjct: 283 DKTVKLWNR-NGQLLQTLTGHSSSVWG 308
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 135/343 (39%), Gaps = 65/343 (18%)
Query: 2 SLLNEVAFSYDG--------SGAISVWEPKGGTLLMSYKGASVLSPHSMCLLG-----ND 48
S +N VAF DG + +W + G LL + G HS + G +
Sbjct: 263 SSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTG------HSSSVWGVAFSPDG 315
Query: 49 YVLGVEKGKPMIQAWPVNSQEKAQLRLICPGRISSMQA---SPDAAYIAVSIETK-LHMW 104
+ ++ W N Q L G SS+ SPD IA + + K + +W
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Query: 105 QISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICK---------- 154
+G+LL T + H + V +S D I + +D T+ +W + + +
Sbjct: 372 N-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430
Query: 155 --------QTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHD 206
QT+A + K + L + HS V V S G +AS S D
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT--IASASDD 488
Query: 207 RTCKIFDLCTGEDLLSLI-LDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR-QVPRTRDH 264
+T K+++ G+ L +L + + VAF I + + +K + Q+ +T
Sbjct: 489 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT--- 544
Query: 265 HIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
GH V ++ S G T+ S+S+D+T+K+W+
Sbjct: 545 ----------LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 103/257 (40%), Gaps = 39/257 (15%)
Query: 81 ISSMQASPDAAYIAVSIETKL-HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
I S+ SPD ++A E +L +W I + +++ H Q I + + + +V+G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 140 DGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSR 199
D T+ +W L C T++ VT V +S G
Sbjct: 186 DRTVRIWDLRTGQCSLTLSI-----------------------EDGVTTVAVSP-GDGKY 221
Query: 200 VASVSHDRTCKIFDLCTGEDLLSLILDTR----------LTCVAFDGTEDNIYMGTSEGV 249
+A+ S DR +++D TG L LD+ + V F ++ G+ +
Sbjct: 222 IAAGSLDRAVRVWDSETG--FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 250 IKSFCLRQVPRTRDHHIQDS-TSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHT 308
+K + L+ D +S T +IGH+ V S++ + +LS S D + W
Sbjct: 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Query: 309 ISRQCLRTIQ-HKGPVL 324
S L +Q H+ V+
Sbjct: 340 KSGNPLLMLQGHRNSVI 356
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 48/230 (20%)
Query: 17 ISVWEPKGGTLLMSYKGASV------LSPHSMCL-----LGNDYVLGVEKGKPMIQAWPV 65
I +W+ + G + S V SP S L +G + GVE GK
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK------- 156
Query: 66 NSQEKAQLRLICPGR-ISSMQASPDAAYIAV-SIETKLHMWQISSGRLLATASSHYQPIT 123
+ L G+ I S+ SPD Y+A +I+ ++++ I++G+LL T H PI
Sbjct: 157 ------EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210
Query: 124 IVKWSADSNFIVTGGEDGTICV-----------------WQLSRLICKQTVAFGIPGSSG 166
+ +S DS +VT +DG I + W L+ C F S
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK 270
Query: 167 KGV---TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFD 213
G +H H V V + G S++ SV D+ I+D
Sbjct: 271 SVKVWDVGTRTCVHTFFDHQDQVWGVKYN--GNGSKIVSVGDDQEIHIYD 318
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 64/234 (27%)
Query: 132 NFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTL 191
N +++ D T+ W+L+ K FG+P S KG HS V TL
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQK----FGVPVRSFKG-------------HSHIVQDCTL 73
Query: 192 SKLGAKSRVASVSHDRTCKIFDLCTGE----------DLLSLILDTRLTCVAFDGTEDNI 241
+ GA + S S D+T +++D+ TGE D+ S+ +D + + + + I
Sbjct: 74 TADGAYA--LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 242 YMGTSEGVIKSFCL-------------RQVPRTR-------------DHHIQDSTSN--- 272
+ T IK CL R VP + D ++ N
Sbjct: 132 KVWT----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 273 --PDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVL 324
DFIGH + +L+ S G + S+ D + +W+ +++ T+ + V
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 69 EKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRL-------LATASSHYQP 121
+KA L + S+ SP+ ++A + T + ++ + L A S +P
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 122 ITI-VKWSADSNFIVTGGEDGTICVWQL 148
+ + WSAD + G D I VWQ+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS 149
I+ + + W ++ ++ A H I + S D I + G+DG I +W L+
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA 226
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 127/296 (42%), Gaps = 53/296 (17%)
Query: 44 LLGNDYVLGVEKGKPMIQAWPVNSQEKAQLRLICPGRISSMQASPDAAYIAV-SIETKLH 102
+L D +L EK K P++ + + ++I PG I S S AYI I+T
Sbjct: 51 ILAEDNLLWREKCKEEGIDEPLHIKRR---KVIKPGFIHSPWKS---AYIRQHRIDTNWR 104
Query: 103 MWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA---- 158
++ S ++L H IT +++ N IV+G +D T+ VW C +T+
Sbjct: 105 RGELKSPKVLKGHDDHV--ITCLQFCG--NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 160
Query: 159 ----------FGIPGSSGKGVTGLT----EPLHVKSQHSLPVTHVTLSKLGAKSRVASVS 204
I GS+ + + E +H H+ V + L + RV S S
Sbjct: 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH----EKRVVSGS 216
Query: 205 HDRTCKIFDLCTGEDLLSLILDT-RLTCVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRD 263
D T +++D+ TG+ L L+ + CV +DG + G + ++K + P T
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVW----DPETET 270
Query: 264 --HHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
H +Q GH +V SL GI ++S S D ++++W + C+ T+
Sbjct: 271 CLHTLQ---------GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 26/166 (15%)
Query: 59 MIQAWPVNSQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATASSH 118
M++ W ++ R+ S+Q ++ S++T + +W + +G + T + H
Sbjct: 260 MVKVWDPETETCLHTLQGHTNRVYSLQFDG-IHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 119 YQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHV 178
+ ++ N +V+G D T+ +W + C QT L
Sbjct: 319 QSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQT-------------------LQG 357
Query: 179 KSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLI 224
++H VT + +K + V + S D T K++DL TGE + +L+
Sbjct: 358 PNKHQSAVTCLQFNK----NFVITSSDDGTVKLWDLKTGEFIRNLV 399
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 11 YDG----SGA----ISVWEPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKPMIQA 62
YDG SGA + VW+P+ T L + +G + +S+ G V G I+
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQFDGIHVVSG--SLDTSIRV 303
Query: 63 WPVNSQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATA---SSHY 119
W V + L ++S D ++ + ++ + +W I +G+ L T + H
Sbjct: 304 WDVETGNCIHT-LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 362
Query: 120 QPITIVKWSADSNFIVTGGEDGTICVWQL 148
+T +++ + NF++T +DGT+ +W L
Sbjct: 363 SAVTCLQF--NKNFVITSSDDGTVKLWDL 389
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 277 GHEKQVTSLSC-SITGITLLSSSADETLKIWHTISRQCLRT-IQHKGPV 323
GH+ V ++C G ++S S D TLK+W ++ +CLRT + H G V
Sbjct: 116 GHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 162
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 47/229 (20%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLI 152
++ S + L +W I +G+ L H + V++ D +V+G D + VW
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET 270
Query: 153 CKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIF 212
C T+ +G T L H V S S D + +++
Sbjct: 271 CLHTL---------QGHTNRVYSLQFDGIH-----------------VVSGSLDTSIRVW 304
Query: 213 DLCTGEDLLSLILDTRLTCVAFDGTE--DNIYM-GTSEGVIKSFCLRQVPRTRDHHIQDS 269
D+ TG + +L LT G E DNI + G ++ +K + I+
Sbjct: 305 DVETGNCIHTLTGHQSLT----SGMELKDNILVSGNADSTVKIW-----------DIKTG 349
Query: 270 TSNPDFIGHEKQVTSLSC-SITGITLLSSSADETLKIWHTISRQCLRTI 317
G K ++++C +++SS D T+K+W + + +R +
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 38/241 (15%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLI 152
++ S + L +W + +G+ H + + V +S D+ IV+GG D + VW + +
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGE 141
Query: 153 CKQTVAFG----------------IPGSSGKGVTGLTEPLHVKS--------QHSLPVTH 188
C T++ G P G L + + + H+ VT
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 189 VTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGTEDNIYMGTSEG 248
VT+S G S AS D +++DL GE L + + + F + T +G
Sbjct: 202 VTVSPDG--SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKG 259
Query: 249 VIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEK---QVTSLSCSITGITLLSSSADETLKI 305
I+ F L +D ++ + P+ G +K + S++ S G TL S D +++
Sbjct: 260 -IRIFDLEN----KDIIVELA---PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
Query: 306 W 306
W
Sbjct: 312 W 312
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 265 HIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
++Q+ F+GH K V S++ S ++S D L++W+ + +C+ T+
Sbjct: 95 NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN-VKGECMHTL 146
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 259 PRTRDHHIQDSTSNPD--FIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQC-LR 315
P H + S PD GH V+ ++ S G +S+S D +L++W+ + QC +
Sbjct: 45 PNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK 104
Query: 316 TIQHKGPVL 324
+ H VL
Sbjct: 105 FLGHTKDVL 113
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 40/217 (18%)
Query: 91 AYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSR 150
A IA+S + + +W I S +A H + V +S D + +T +D TI VW+ ++
Sbjct: 862 AVIALS-QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TK 919
Query: 151 LICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCK 210
+CK + L + + V Q + ++ V +V + R +
Sbjct: 920 KVCKNSAIV------------LKQEIDVVFQEN-------------ETMVLAVDNIRGLQ 954
Query: 211 IFDLCTGEDLLSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDST 270
+ TG+ + + + +++C + + G +G IK + ++P R
Sbjct: 955 LIAGKTGQ--IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK---IIELPNNR-------- 1001
Query: 271 SNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
+GH+K V + + G TL+SSS D +++W+
Sbjct: 1002 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 87 SPDAAYIAV-SIETKLHMWQISSGRLLATASSHYQPITIVKWSADSN--FIVTGGEDGTI 143
S D +YIA S + K+ +W ++G+L+ T H + + ++ SN + TG D +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 144 CVWQLSRLICKQTVAFG 160
+W L++ C+ T+ FG
Sbjct: 733 KLWDLNQKECRNTM-FG 748
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 26/144 (18%)
Query: 182 HSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLIL-DTRLTCVAFDGTEDN 240
H+ V H S+ G R+AS D+T ++F TGE LL + + + C AF +
Sbjct: 621 HTDAVYHACFSQDG--QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 241 IYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNP---DFIGHEKQVTSLSCSITG----IT 293
I +++ +K I DS + + H +QV C T +
Sbjct: 679 IATCSADKKVK--------------IWDSATGKLVHTYDEHSEQVN--CCHFTNKSNHLL 722
Query: 294 LLSSSADETLKIWHTISRQCLRTI 317
L + S D LK+W ++C T+
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTM 746
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 40/217 (18%)
Query: 91 AYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSR 150
A IA+S + + +W I S +A H + V +S D + +T +D TI VW+ ++
Sbjct: 855 AVIALS-QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TK 912
Query: 151 LICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCK 210
+CK + L + + V Q + ++ V +V + R +
Sbjct: 913 KVCKNSAIV------------LKQEIDVVFQEN-------------ETMVLAVDNIRGLQ 947
Query: 211 IFDLCTGEDLLSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDST 270
+ TG+ + + + +++C + + G +G IK + ++P R
Sbjct: 948 LIAGKTGQ--IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK---IIELPNNR-------- 994
Query: 271 SNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
+GH+K V + + G TL+SSS D +++W+
Sbjct: 995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 87 SPDAAYIAV-SIETKLHMWQISSGRLLATASSHYQPITIVKWSADSN--FIVTGGEDGTI 143
S D +YIA S + K+ +W ++G+L+ T H + + ++ SN + TG D +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 144 CVWQLSRLICKQTVAFG 160
+W L++ C+ T+ FG
Sbjct: 726 KLWDLNQKECRNTM-FG 741
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 26/144 (18%)
Query: 182 HSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLIL-DTRLTCVAFDGTEDN 240
H+ V H S+ G R+AS D+T ++F TGE LL + + + C AF +
Sbjct: 614 HTDAVYHACFSQDG--QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 241 IYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNP---DFIGHEKQVTSLSCSITG----IT 293
I +++ +K I DS + + H +QV C T +
Sbjct: 672 IATCSADKKVK--------------IWDSATGKLVHTYDEHSEQVN--CCHFTNKSNHLL 715
Query: 294 LLSSSADETLKIWHTISRQCLRTI 317
L + S D LK+W ++C T+
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTM 739
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 38/232 (16%)
Query: 79 GRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGG 138
G +S + D + S +T +W I +G+ T + H + + + D+ V+G
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 139 EDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKS 198
D + +W + +C+QT TG H + + G +
Sbjct: 204 CDASAKLWDVREGMCRQT------------FTG----------HESDINAICFFPNG--N 239
Query: 199 RVASVSHDRTCKIFDLCTGEDLLSLILDT---RLTCVAFDGTEDNIYMGTSEGVIKSFCL 255
A+ S D TC++FDL ++L++ D +T V+F + + G + +
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 256 RQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
+ R GH+ +V+ L + G+ + + S D LKIW+
Sbjct: 300 LKADRA-----------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Query: 21 EPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKPMIQAWPVNSQEKAQLRLICPGR 80
+ + G + +S + A S C +D + G W + + ++ G
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Query: 81 ISSMQASPDAA-YIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+ S+ +PD +++ + + +W + G T + H I + + + N TG +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 140 DGTICVWQL 148
D T ++ L
Sbjct: 247 DATCRLFDL 255
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/249 (18%), Positives = 92/249 (36%), Gaps = 55/249 (22%)
Query: 110 RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS----------RLICKQTVAF 159
R T H I + W DS +++ +DG + +W R T A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 160 GIPGS--SGKGVTGLTEPLHVKSQH-SLPVT--------HVTLSKLGAKSRVASVSHDRT 208
G+ + G+ + ++K++ ++ V+ +++ + +++ + S D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 209 CKIFDL-----------CTGEDL-LSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR 256
C ++D+ TG+ + LSL DTRL G + K + +R
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-----------FVSGACDASAKLWDVR 214
Query: 257 QVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRT 316
+ F GHE + ++ G + S D T +++ + Q L T
Sbjct: 215 E-----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 317 IQHKGPVLG 325
H + G
Sbjct: 264 YSHDNIICG 272
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 38/232 (16%)
Query: 79 GRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGG 138
G +S + D + S +T +W I +G+ T + H + + + D+ V+G
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 139 EDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKS 198
D + +W + +C+QT TG H + + G +
Sbjct: 204 CDASAKLWDVREGMCRQT------------FTG----------HESDINAICFFPNG--N 239
Query: 199 RVASVSHDRTCKIFDLCTGEDLLSLILDT---RLTCVAFDGTEDNIYMGTSEGVIKSFCL 255
A+ S D TC++FDL ++L++ D +T V+F + + G + +
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 256 RQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
+ R GH+ +V+ L + G+ + + S D LKIW+
Sbjct: 300 LKADRA-----------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Query: 21 EPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKPMIQAWPVNSQEKAQLRLICPGR 80
+ + G + +S + A S C +D + G W + + ++ G
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Query: 81 ISSMQASPDAA-YIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+ S+ +PD +++ + + +W + G T + H I + + + N TG +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 140 DGTICVWQL 148
D T ++ L
Sbjct: 247 DATCRLFDL 255
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 55/249 (22%)
Query: 110 RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS----------RLICKQTVAF 159
R T H I + W DS +V+ +DG + +W R T A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 160 GIPGS--SGKGVTGLTEPLHVKSQH-SLPVT--------HVTLSKLGAKSRVASVSHDRT 208
G+ + G+ + ++K++ ++ V+ +++ + +++ + S D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 209 CKIFDL-----------CTGEDL-LSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR 256
C ++D+ TG+ + LSL DTRL G + K + +R
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-----------FVSGACDASAKLWDVR 214
Query: 257 QVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRT 316
+ F GHE + ++ G + S D T +++ + Q L T
Sbjct: 215 E-----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 317 IQHKGPVLG 325
H + G
Sbjct: 264 YSHDNIICG 272
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 110 RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGV 169
+ +T H + + V+++ D + + G DGTI ++ G+ G+
Sbjct: 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN------------GVDGTK---- 224
Query: 170 TGLTEPLHVKS-QHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR 228
TG+ E +K+ HS V +T S G K +AS S D+T KI+++ T + ++ + TR
Sbjct: 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTK--IASASADKTIKIWNVATLKVEKTIPVGTR 282
Query: 229 LT--CVAFDGTEDNIYMGTSEGVIKSFC--LRQVPRTRDHHIQDSTSNPDFIGHEKQVTS 284
+ + T+ + ++ G I L + + R GH K +T+
Sbjct: 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR-------------YGHNKAITA 329
Query: 285 LSCSITGITLLSSSADETLKIW 306
LS S G TL S+ A+ + W
Sbjct: 330 LSSSADGKTLFSADAEGHINSW 351
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 37 LSPHSMCL-LGND-YVLGVEKGKPMIQAWPVNSQEKAQLRLIC-PGRISSMQASPDAAYI 93
+S +S C+ L ND + V + + ++ ++++ I P I+S+ S + A++
Sbjct: 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 506
Query: 94 AVSIET-KLHMWQISSGRLLATASS---HYQPITIVKWSADSNFIVTGGEDGTICVWQLS 149
+ ++ K+ + +++ LA +S H + V WS D+ + TG D ++ VW ++
Sbjct: 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Query: 150 R 150
+
Sbjct: 567 K 567
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 276 IGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTI 317
+ H V L+ S G + S+SAD+T+KIW+ + + +TI
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 38/232 (16%)
Query: 79 GRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGG 138
G +S + D + S +T +W I +G+ T + H + + + D+ V+G
Sbjct: 155 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 214
Query: 139 EDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKS 198
D + +W + +C+QT TG H + + G +
Sbjct: 215 CDASAKLWDVREGMCRQT------------FTG----------HESDINAICFFPNG--N 250
Query: 199 RVASVSHDRTCKIFDLCTGEDLLSLILDT---RLTCVAFDGTEDNIYMGTSEGVIKSFCL 255
A+ S D TC++FDL ++L++ D +T V+F + + G + +
Sbjct: 251 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
Query: 256 RQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
+ R GH+ +V+ L + G+ + + S D LKIW+
Sbjct: 311 LKADRA-----------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Query: 21 EPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKPMIQAWPVNSQEKAQLRLICPGR 80
+ + G + +S + A S C +D + G W + + ++ G
Sbjct: 138 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 197
Query: 81 ISSMQASPDAA-YIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+ S+ +PD +++ + + +W + G T + H I + + + N TG +
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 257
Query: 140 DGTICVWQL 148
D T ++ L
Sbjct: 258 DATCRLFDL 266
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 55/249 (22%)
Query: 110 RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS----------RLICKQTVAF 159
R T H I + W DS +V+ +DG + +W R T A+
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 160 GIPGS--SGKGVTGLTEPLHVKSQH-SLPVT--------HVTLSKLGAKSRVASVSHDRT 208
G+ + G+ + ++K++ ++ V+ +++ + +++ + S D T
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 176
Query: 209 CKIFDL-----------CTGEDL-LSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR 256
C ++D+ TG+ + LSL DTRL G + K + +R
Sbjct: 177 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-----------FVSGACDASAKLWDVR 225
Query: 257 QVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRT 316
+ F GHE + ++ G + S D T +++ + Q L T
Sbjct: 226 E-----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Query: 317 IQHKGPVLG 325
H + G
Sbjct: 275 YSHDNIICG 283
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 38/232 (16%)
Query: 79 GRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGG 138
G +S + D + S +T +W I +G+ T + H + + + D+ V+G
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 139 EDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKS 198
D + +W + +C+QT TG H + + G +
Sbjct: 204 CDASAKLWDVREGMCRQT------------FTG----------HESDINAICFFPNG--N 239
Query: 199 RVASVSHDRTCKIFDLCTGEDLLSLILDT---RLTCVAFDGTEDNIYMGTSEGVIKSFCL 255
A+ S D TC++FDL ++L++ D +T V+F + + G + +
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 256 RQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
+ R GH+ +V+ L + G+ + + S D LKIW+
Sbjct: 300 LKADRA-----------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Query: 21 EPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKPMIQAWPVNSQEKAQLRLICPGR 80
+ + G + +S + A S C +D + G W + + ++ G
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Query: 81 ISSMQASPDAA-YIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+ S+ +PD +++ + + +W + G T + H I + + + N TG +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 140 DGTICVWQL 148
D T ++ L
Sbjct: 247 DATCRLFDL 255
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/249 (18%), Positives = 92/249 (36%), Gaps = 55/249 (22%)
Query: 110 RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS----------RLICKQTVAF 159
R T H I + W DS +++ +DG + +W R T A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 160 GIPGS--SGKGVTGLTEPLHVKSQH-SLPVT--------HVTLSKLGAKSRVASVSHDRT 208
G+ + G+ + ++K++ ++ V+ +++ + +++ + S D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 209 CKIFDL-----------CTGEDL-LSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR 256
C ++D+ TG+ + LSL DTRL G + K + +R
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-----------FVSGACDASAKLWDVR 214
Query: 257 QVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRT 316
+ F GHE + ++ G + S D T +++ + Q L T
Sbjct: 215 E-----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 317 IQHKGPVLG 325
H + G
Sbjct: 264 YSHDNIICG 272
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 38/232 (16%)
Query: 79 GRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGG 138
G +S + D + S +T +W I +G+ T + H + + + D+ V+G
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 139 EDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKS 198
D + +W + +C+QT TG H + + G +
Sbjct: 204 CDASAKLWDVREGMCRQT------------FTG----------HESDINAICFFPNG--N 239
Query: 199 RVASVSHDRTCKIFDLCTGEDLLSLILDT---RLTCVAFDGTEDNIYMGTSEGVIKSFCL 255
A+ S D TC++FDL ++L++ D +T V+F + + G + +
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 256 RQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
+ R GH+ +V+ L + G+ + + S D LKIW+
Sbjct: 300 LKADRA-----------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Query: 21 EPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKPMIQAWPVNSQEKAQLRLICPGR 80
+ + G + +S + A S C +D + G W + + ++ G
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Query: 81 ISSMQASPDAA-YIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+ S+ +PD +++ + + +W + G T + H I + + + N TG +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 140 DGTICVWQL 148
D T ++ L
Sbjct: 247 DATCRLFDL 255
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 55/249 (22%)
Query: 110 RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLS----------RLICKQTVAF 159
R T H I + W DS +V+ +DG + +W R T A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 160 GIPGS--SGKGVTGLTEPLHVKSQH-SLPVT--------HVTLSKLGAKSRVASVSHDRT 208
G+ + G+ + ++K++ ++ V+ +++ + +++ + S D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 209 CKIFDL-----------CTGEDL-LSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLR 256
C ++D+ TG+ + LSL DTRL G + K + +R
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-----------FVSGACDASAKLWDVR 214
Query: 257 QVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRT 316
+ F GHE + ++ G + S D T +++ + Q L T
Sbjct: 215 E-----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 317 IQHKGPVLG 325
H + G
Sbjct: 264 YSHDNIICG 272
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 275 FIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKG 321
F+GH K V S++ S+ ++S+S D T+K+W+T+ +C TI G
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGG 513
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 81 ISSMQASPDA---AYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTG 137
+S ++ SP+ ++ S + + +W +S+ +L +T + H ++ V S D + +G
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 138 GEDGTICVWQLSR 150
G+DG + +W L+
Sbjct: 580 GKDGVVLLWDLAE 592
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 114/297 (38%), Gaps = 41/297 (13%)
Query: 48 DYVLGVEKGKPMIQAWPVNSQEKA----QLRLICPGR-ISSMQASPDAAY-IAVSIETKL 101
D ++ + K +I W + +KA Q RL + + S D + ++ S + +L
Sbjct: 396 DIIVSASRDKSII-LWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 102 HMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGI 161
+W +++G H + + V +S D+ IV+ D TI +W + CK T++ G
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGG 513
Query: 162 PG-----SSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVA--------------- 201
G S + +P V + V LS +S +A
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 202 ----SVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLRQ 257
S D ++DL G+ L SL ++ + + F + T G IK + L
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHG-IKIWDLES 632
Query: 258 VPRTRDHHIQ-----DSTSNPDFIGHEKQV---TSLSCSITGITLLSSSADETLKIW 306
D + + N +++V TSL+ S G TL S D +++W
Sbjct: 633 KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 37/154 (24%)
Query: 7 VAFSYDGS--------GAISVWEPKGGTLLMSYKGASVLSPHSMCLLGNDYVL--GVEKG 56
VA S DGS G + +W+ G L S + SV+ H++C N Y L E G
Sbjct: 567 VAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVI--HALCFSPNRYWLCAATEHG 624
Query: 57 KPMIQAWPVNSQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATAS 116
I+ W + S+ I ++A + A + TK + +S
Sbjct: 625 ---IKIWDLESKS------IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS-------- 667
Query: 117 SHYQPITIVKWSADSNFIVTGGEDGTICVWQLSR 150
+ WSAD + + +G DG I VW + R
Sbjct: 668 --------LNWSADGSTLFSGYTDGVIRVWGIGR 693
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 33/202 (16%)
Query: 111 LLATASSHYQPITIVKWSAD-SNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGV 169
L T +H +T + D ++ IV+ D +I +W+L+ K A+G+ + + +
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLT----KDDKAYGV---AQRRL 426
Query: 170 TGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTR- 228
TG HS V V LS G S S D +++DL G + T+
Sbjct: 427 TG----------HSHFVEDVVLSSDG--QFALSGSWDGELRLWDLAAGVSTRRFVGHTKD 474
Query: 229 LTCVAFDGTEDNIYMGTSEGVIKSF-CLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSC 287
+ VAF I + + IK + L + T + GH V+ +
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE---------GHRDWVSCVRF 525
Query: 288 SITGI--TLLSSSADETLKIWH 307
S + T++S+S D+T+K+W+
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWN 547
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 87/226 (38%), Gaps = 45/226 (19%)
Query: 145 VWQLSRLICKQTVAFG---IPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVA 201
V+Q ++L KQ V G + + K +T L+ V H+ V H S+ G R+A
Sbjct: 582 VYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRL--VVRPHTDAVYHACFSEDG--QRIA 637
Query: 202 SVSHDRTCKIFDLCTGEDLLSLIL-DTRLTCVAFDGTEDNIYMGTSEGVIKSF--CLRQV 258
S D+T ++F TGE LL + + + C AF + I + + +K + ++
Sbjct: 638 SCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGEL 697
Query: 259 PRTRD---------------HHIQDSTSNPD----------------FIGHEKQVTSLSC 287
T D HH+ +T + D GH V
Sbjct: 698 VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRF 757
Query: 288 SITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVLGAFLGLLPP 333
S L S SAD TLK+W S ++I V FL L P
Sbjct: 758 SPDDKLLASCSADGTLKLWDATSANERKSIN----VKQFFLNLEDP 799
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 73/167 (43%), Gaps = 25/167 (14%)
Query: 1 MSLLNEVAFSYDGSG--------AISVWEPK----GGTLLMSYKGASVLSPHSMCLLGND 48
+S ++ V FS DGS I +WE K +++ + V + + +L D
Sbjct: 888 LSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVD 947
Query: 49 YVLGVEKGKPMIQAWPVNSQEKAQLRLICPGRISSMQASPDAAYIAVSIET-KLHMWQIS 107
++ ++ +N + Q+ + ++S SP YIA E + + ++
Sbjct: 948 HIRRLQ---------LINGR-TGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELV 997
Query: 108 SGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICV--WQLSRLI 152
+ R+ + H + + ++++AD +++ +D I V WQL + I
Sbjct: 998 NNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI 1044
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 87 SPDAAYIAV-SIETKLHMWQISSGRLLATASSHYQPITIVKWSADSN--FIVTGGEDGTI 143
S D +IA S++ K+ +W +G L+ T H + + ++ S+ + TG D +
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 144 CVWQLSRLICKQTVAFGIPGS 164
+W L++ C+ T+ FG S
Sbjct: 732 KLWDLNQKECRNTM-FGHTNS 751
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 45/226 (19%)
Query: 101 LHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFG 160
+ +W S +A H + V +S D + +T +D TI +W+ ++ +CK +
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE-TKKVCKNSAVM- 927
Query: 161 IPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDL 220
L + + V Q + + V +V H R ++ + TG+
Sbjct: 928 -----------LKQEVDVVFQEN-------------EVMVLAVDHIRRLQLINGRTGQ-- 961
Query: 221 LSLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDF---IG 277
+ + + +++C I G G I+ I + +N F
Sbjct: 962 IDYLTEAQVSCCCLSPHLQYIAFGDENGAIE--------------ILELVNNRIFQSRFQ 1007
Query: 278 HEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPV 323
H+K V + + TL+SSS D +++W+ +C+ H+ V
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETV 1053
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 60 IQAWPVNSQEKAQLRLICPGRISSMQASPDAA-YIAVSIETKLHMWQISSGRLLATASSH 118
++ W + + K + + G + S S DA + + S + +W L H
Sbjct: 1073 VKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGH 1132
Query: 119 YQPITIVKWSADSNFIVTGGEDGTICVWQLS 149
+ +S DS + TG ++G I +W +S
Sbjct: 1133 NGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 44/227 (19%)
Query: 87 SPDAAYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKW--SADSNFIVTGGEDGTIC 144
+ D + S + +W + SG+LL + H + + S N V+GG D
Sbjct: 164 NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 145 VWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVS 204
VW + C Q T V S P + AS S
Sbjct: 224 VWDMRSGQCVQAFE--------------THESDVNSVRYYP----------SGDAFASGS 259
Query: 205 HDRTCKIFDLCTGEDLL-----SLILDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLRQVP 259
D TC+++DL ++ S+I + V F + ++ G ++ I + + +
Sbjct: 260 DDATCRLYDLRADREVAIYSKESIIFGA--SSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Query: 260 RTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIW 306
R GHE +V++L S G S S D TL++W
Sbjct: 318 RV-----------SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 13 GSGAISVWEPKGGTLLMSY--KGASVLSPHSMCL------LGNDYVLGVEKGKPMIQAWP 64
G G ++W+ + G LL S+ GA VL CL GN +V G K M+ W
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVL-----CLDLAPSETGNTFVSGGCDKKAMV--WD 226
Query: 65 VNSQEKAQLRLICPGRISSMQASPDA-AYIAVSIETKLHMWQISSGRLLATASSH--YQP 121
+ S + Q ++S++ P A+ + S + ++ + + R +A S
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 122 ITIVKWSADSNFIVTGGEDGTICVWQL 148
+ V +S + G D TI VW +
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDV 313
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L A++ +T + WS D N IVTG E+G + +W + +
Sbjct: 100 LSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGAL------------------ 141
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLIL-DTRL 229
L+V + H P+ V +K G + + S+ + ++++ +G + L +T
Sbjct: 142 -----LNVLNFHRAPIVSVKWNKDG--THIISMDVENVTILWNVISGTVMQHFELKETGG 194
Query: 230 TCVAFDGTEDNIYMGTS-EGVIKSFCLRQVPRTR--DHHIQDSTSNPDFIGHEKQVTSLS 286
+ + + + +G E V + P+ + I + T IGH ++ L
Sbjct: 195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE 254
Query: 287 CSITGITLLSSSADETLKIWH 307
+ T LLS+S D TL+IWH
Sbjct: 255 FNDTNKLLLSASDDGTLRIWH 275
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 80 RISSMQASPDAAYIAVSIET-KLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGG 138
+++ + S D I +E +L +W +G LL + H PI VKW+ D I++
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD 168
Query: 139 EDGTICVWQL 148
+ +W +
Sbjct: 169 VENVTILWNV 178
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 89 DAAYIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQL 148
D I+ S++ + +W + LLA + PI + S D DG + V+ L
Sbjct: 300 DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359
Query: 149 SRLICKQTVAFG 160
+L K +G
Sbjct: 360 KKLNSKSRSLYG 371
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 25/147 (17%)
Query: 88 PDAAYIAVSIETKLHMWQI-SSGRLLATASS-HYQPITIVKWSADSNFIVTGGEDGTICV 145
P IA S + W++ SG+ + A H P+ V WS D + + T D T +
Sbjct: 53 PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112
Query: 146 WQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSH 205
W LS Q + +QH PV + K S V + S
Sbjct: 113 WDLSS---NQAIQI--------------------AQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 206 DRTCKIFDLCTGEDLLSLILDTRLTCV 232
D+T K +D + ++ L L R C
Sbjct: 150 DKTLKFWDTRSSNPMMVLQLPERCYCA 176
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 278 HEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPV 323
H V + S G + ++S D+T K+W S Q ++ QH PV
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPV 130
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 28/219 (12%)
Query: 112 LATASSHYQPITIVKWSA-DSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
+A S+H + VK++A N + +GG +G I +W +++ C ++ + P + G+ ++
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK--CTESPSNYTPLTPGQSMS 163
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLI------ 224
+ E + + SL HV AS I+DL ++++ L
Sbjct: 164 SVDEVISLAWNQSL--AHV----------FASAGSSNFASIWDLKAKKEVIHLSYTSPNS 211
Query: 225 -LDTRLTCVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
+ +L+ V + +++ + T+ G + + R+ + T N GH+K +
Sbjct: 212 GIKQQLSVVEWH-PKNSTRVATATGSDNDPSIL-IWDLRNANTPLQTLNQ---GHQKGIL 266
Query: 284 SLS-CSITGITLLSSSADETLKIWHTISRQCLRTIQHKG 321
SL C LLSS D T+ +W+ S + L +G
Sbjct: 267 SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 31/271 (11%)
Query: 60 IQAWPVNSQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATASSHY 119
I+ W N+ E ++ G + +Q + I S ++ + +W +++G +L T H
Sbjct: 155 IKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHC 213
Query: 120 QPITIVKWSADSNFIVTGGEDGTICVWQ--------LSRLICKQTVAFGIPGSSGKGVTG 171
+ + +++ ++ +VT +D +I VW L R++ A + K +
Sbjct: 214 EAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 271
Query: 172 LTEPLHVKSQHSLPVTHVT--------LSKLGAKSR-VASVSHDRTCKIFDLCTGEDLLS 222
+ +K ++ V ++ L + R V S S D T +++D+ G L
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 223 LILDTRLT-CVAFDGTEDNIYMGTSEGVIKSFCLRQV--PRTRDHHIQDSTSNPDFIGHE 279
L L C+ FD I G +G IK + L PR + T + H
Sbjct: 332 LEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT----LVEHS 385
Query: 280 KQVTSLSCSITGITLLSSSADETLKIWHTIS 310
+V L ++SSS D+T+ IW ++
Sbjct: 386 GRVFRLQ--FDEFQIVSSSHDDTILIWDFLN 414
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 45/213 (21%)
Query: 130 DSNFIVTGGEDGTICVWQLSRLICKQTVA--------------FGIPGSSGKGV----TG 171
D IV+G D TI +W + L CK+ + I GSS V
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201
Query: 172 LTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGED--LLSLILDTRL 229
E L+ H V H+ + + + S DR+ ++D+ + D L +++ R
Sbjct: 202 TGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 230 TCVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFI----GHEKQVTSL 285
D + I + + IK + +TS +F+ GH++ + L
Sbjct: 258 AVNVVDFDDKYIVSASGDRTIKVW---------------NTSTCEFVRTLNGHKRGIACL 302
Query: 286 SCSITGITLLSSSADETLKIWHTISRQCLRTIQ 318
++S S+D T+++W CLR ++
Sbjct: 303 --QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 333
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 88 PDAAY-IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVW 146
PD Y I S + + +W + +AT H ++ + I++G EDGT+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 147 QLSRLICKQTVAFGIPGS 164
S ++T+ G+ S
Sbjct: 256 NSSTYKVEKTLNVGLERS 273
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 88 PDAAY-IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVW 146
PD Y I S + + +W + +AT H ++ + I++G EDGT+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 147 QLSRLICKQTVAFGIPGS 164
S ++T+ G+ S
Sbjct: 256 NSSTYKVEKTLNVGLERS 273
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 88 PDAAY-IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVW 146
PD Y I S + + +W + +AT H ++ + I++G EDGT+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 147 QLSRLICKQTVAFGIPGS 164
S ++T+ G+ S
Sbjct: 256 NSSTYKVEKTLNVGLERS 273
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 88 PDAAY-IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVW 146
PD Y I S + + +W + +AT H ++ + I++G EDGT+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 147 QLSRLICKQTVAFGIPGS 164
S ++T+ G+ S
Sbjct: 256 NSSTYKVEKTLNVGLERS 273
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 72/189 (38%)
Query: 132 NFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTL 191
+ I++ D TI +W+L+R +GIP + +G HS V+ V +
Sbjct: 29 DMILSASRDKTIIMWKLTR----DETNYGIPQRALRG-------------HSHFVSDVVI 71
Query: 192 SKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGTEDNIYMGTSEGVIK 251
S G + S S D T +++DL TG
Sbjct: 72 SSDGQFA--LSGSWDGTLRLWDLTTG---------------------------------- 95
Query: 252 SFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISR 311
T+ F+GH K V S++ S ++S S D+T+K+W+T+
Sbjct: 96 ------------------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG- 136
Query: 312 QCLRTIQHK 320
C T+Q +
Sbjct: 137 VCKYTVQDE 145
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 81 ISSMQASPDAAY-IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+S + S D + ++ S + L +W +++G H + + V +S+D+ IV+G
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 140 DGTICVWQLSRLICKQTV 157
D TI +W + +CK TV
Sbjct: 126 DKTIKLWN-TLGVCKYTV 142
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 52 GVEKGKPMIQAWPVNSQEKAQLRLICPGRI-SSMQASPDAAYIAVSIETKLHMWQISSGR 110
G + G+ M+ W +N E L + G I +++ SP+ ++ + + +W + G+
Sbjct: 210 GGKDGQAML--WDLN--EGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE-GK 264
Query: 111 LLA--------TASSHYQP--ITIVKWSADSNFIVTGGEDGTICVWQLS 149
++ + SS +P T + WSAD + G D + VWQ++
Sbjct: 265 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 81 ISSMQASPDAA---YIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTG 137
+S ++ SP+++ ++ + + +W +++ +L H + V S D + +G
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 138 GEDGTICVWQLSR 150
G+DG +W L+
Sbjct: 211 GKDGQAMLWDLNE 223
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 82/273 (30%)
Query: 114 TASSHYQPITIVKWSADSNFIVTGGEDGTICVWQ--------LSRLICKQTV--AFGIPG 163
T H + + W+ + N+IV+ +DG + VW +L C + AF G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 164 SSGK--GVTGLTEPLHVKSQH----SLPVTHVTLSKLGAKS----------RVASVSHDR 207
S G+ ++ SQ ++PV+ V G S R+ + S D+
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 208 TCKIFDLCTGE---------------DLLSL--------------------ILDTRLTCV 232
TC ++D+ TG+ D+LSL + D R+T
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 233 A---FDGTEDNIY------------MGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIG 277
A + G E +I G+ +G + F +R H +Q PD
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-----GHQLQVYNREPDRND 295
Query: 278 HEKQ-VTSLSCSITGITLLSSSADETLKIWHTI 309
+E VTS++ SI+G L + ++ +W T+
Sbjct: 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 81 ISSMQASPDAAYIAVSIETKLHMWQIS-SGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
I+S+ A+ +I+ S +T + +W + + R + T H I VK+ D TG +
Sbjct: 213 INSLNAN---MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 140 DGT 142
DGT
Sbjct: 270 DGT 272
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 72/189 (38%)
Query: 132 NFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTL 191
+ I++ D TI +W+L+R +GIP + +G HS V+ V +
Sbjct: 52 DMILSASRDKTIIMWKLTR----DETNYGIPQRALRG-------------HSHFVSDVVI 94
Query: 192 SKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGTEDNIYMGTSEGVIK 251
S G + S S D T +++DL TG
Sbjct: 95 SSDGQFA--LSGSWDGTLRLWDLTTG---------------------------------- 118
Query: 252 SFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISR 311
T+ F+GH K V S++ S ++S S D+T+K+W+T+
Sbjct: 119 ------------------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG- 159
Query: 312 QCLRTIQHK 320
C T+Q +
Sbjct: 160 VCKYTVQDE 168
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 81 ISSMQASPDAAY-IAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+S + S D + ++ S + L +W +++G H + + V +S+D+ IV+G
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 140 DGTICVWQLSRLICKQTV 157
D TI +W + +CK TV
Sbjct: 149 DKTIKLWN-TLGVCKYTV 165
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 52 GVEKGKPMIQAWPVNSQEKAQLRLICPGRI-SSMQASPDAAYIAVSIETKLHMWQISSGR 110
G + G+ M+ W +N E L + G I +++ SP+ ++ + + +W + G+
Sbjct: 233 GGKDGQAML--WDLN--EGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE-GK 287
Query: 111 LLA--------TASSHYQP--ITIVKWSADSNFIVTGGEDGTICVWQLS 149
++ + SS +P T + WSAD + G D + VWQ++
Sbjct: 288 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 81 ISSMQASPDAA---YIAVSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTG 137
+S ++ SP+++ ++ + + +W +++ +L H + V S D + +G
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 138 GEDGTICVWQLSR 150
G+DG +W L+
Sbjct: 234 GKDGQAMLWDLNE 246
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 69/184 (37%)
Query: 126 KWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLP 185
K + DS +++G D T+ +W+L +Q FGIP K +TG H+
Sbjct: 34 KENEDSPVLISGSRDKTVMIWKLYEE--EQNGYFGIPH---KALTG----------HNHF 78
Query: 186 VTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGTEDNIYMGT 245
V+ + LS+ S S D+T +++DL TG
Sbjct: 79 VSDLALSQ--ENCFAISSSWDKTLRLWDLRTG---------------------------- 108
Query: 246 SEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKI 305
T+ F+GH+ +V S++ S +LS+ A+ +K+
Sbjct: 109 ------------------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKL 144
Query: 306 WHTI 309
W+ +
Sbjct: 145 WNIL 148
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/190 (18%), Positives = 72/190 (37%), Gaps = 41/190 (21%)
Query: 82 SSMQASPDAAYIA-VSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGED 140
S+ + P A Y A V + +L +W ++ ++ T +H + + S + +I TGG+D
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD 234
Query: 141 GTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRV 200
+ +W + L Q +G + + K +
Sbjct: 235 KKLLIWDILNLTYPQR-----EFDAGSTINQIA--------------------FNPKLQW 269
Query: 201 ASVSHDRTCKIFDLCTGEDLLSLILDT--------------RLTCVAFDGTEDNIYMGTS 246
+V D+ KIF+L T ++ + T +A++ ++ G +
Sbjct: 270 VAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329
Query: 247 EGVIKSFCLR 256
+GVI++F
Sbjct: 330 DGVIRTFSFE 339
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 44/212 (20%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
LLA H + V WS D ++ T D ++ +W+ SG+
Sbjct: 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE--------------SGEEY- 143
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
E + V +HS V HV +++ +AS S+D T +I+ D
Sbjct: 144 ---ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWK----------DYDDDWE 188
Query: 231 CVA-FDGTEDNIY---MGTSEGVIK--SFCLRQVPRTRDHHIQDSTSNPDFIG------- 277
CVA +G E ++ +EGV + S R + D +++
Sbjct: 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248
Query: 278 HEKQVTSLSCSITGITLLSSSADETLKIWHTI 309
H++QV +++ G+ + S AD L ++ +
Sbjct: 249 HKRQVYNVAWGFNGL-IASVGADGVLAVYEEV 279
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 93 IAVSIETKLHMWQISSGRLLATASSHYQP-ITIVKWSADSNFIVTGGEDGTICVWQLSRL 151
+AV++E +++W SG + A A + + VKWS D +F+ G +G + ++ +
Sbjct: 107 VAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166
Query: 152 ICKQTVA 158
+T+A
Sbjct: 167 TKLRTMA 173
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 81 ISSMQASPDAAYIAVSIET-KLHMWQISSGRLLATAS--SHYQPITIVKWSADSNFIVTG 137
IS + D IA+ ++H+++ S + + H +T V W+ DSN IVT
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 138 GEDGTICVWQLSRLICKQTV 157
G D VW L K T+
Sbjct: 71 GTDRNAYVWTLKGRTWKPTL 90
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 118 HYQPITIVKWSA-DSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPL 176
H P+ + W + N I +G ED T+ VW++ G V L EP+
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI---------------PDGGLVLPLREPV 124
Query: 177 HVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRL-TCVAFD 235
H+ V V A++ + S D ++D+ TG +L+L D T + D
Sbjct: 125 ITLEGHTKRVGIVAWHPT-AQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183
Query: 236 GTEDNIYMGTS 246
+ D + TS
Sbjct: 184 WSRDGALICTS 194
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 81 ISSMQASPDAAYIAVSIET-KLHMWQISSGRLLAT--ASSHYQPITIVKWSADSNFIVTG 137
IS + D IA+ ++H+++ S + + H +T + W+ DSN IVT
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 138 GEDGTICVWQLSRLICKQTV 157
G D VW L K T+
Sbjct: 71 GTDRNAYVWTLKGRTWKPTL 90
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 24/96 (25%)
Query: 128 SADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVT 187
S N +V+G D T+ VW ++++ C L++ S H+ +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKC----------------------LYILSGHTDRIY 314
Query: 188 HVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSL 223
+ R S S D T +I+DL GE + +L
Sbjct: 315 STIYDH--ERKRCISASMDTTIRIWDLENGELMYTL 348
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 31/191 (16%)
Query: 118 HYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLH 177
H + + V WS N++ + D T C+W+ ++ + VT L
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ-------------DDFECVTTL----- 101
Query: 178 VKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGT 237
H V V + G + +A+ S D++ ++++ ED + V T
Sbjct: 102 --EGHENEVKSVAWAPSG--NLLATCSRDKSVWVWEV-DEEDEYECVS------VLNSHT 150
Query: 238 ED--NIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLL 295
+D ++ S+ ++ S + D GHE V SL+ +G L
Sbjct: 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210
Query: 296 SSSADETLKIW 306
S S D T++IW
Sbjct: 211 SCSDDRTVRIW 221
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 33/165 (20%)
Query: 81 ISSMQASPDAAYIA-VSIETKLHMWQISSGRL--LATASSHYQPITIVKWSADSNFIVTG 137
+ + SP Y+A S + +W+ + + T H + V W+ N + T
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC 123
Query: 138 GEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAK 197
D ++ VW++ E + V + H+ V HV ++
Sbjct: 124 SRDKSVWVWEVDE-------------------EDEYECVSVLNSHTQDVKHVVWHP--SQ 162
Query: 198 SRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGTEDNIY 242
+AS S+D T K++ D + C +G E ++
Sbjct: 163 ELLASASYDDTVKLY---------REEEDDWVCCATLEGHESTVW 198
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 266 IQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHK 320
++D ++ IGH VT ++ G +LS+S D T+++W + + T K
Sbjct: 168 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 22/87 (25%)
Query: 243 MGTSEGVIK----SFCL-RQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSS 297
+GT+EG IK +F L R++ + H ++T L +G L+SS
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQ----------------AHVSEITKLKFFPSGEALISS 157
Query: 298 SADETLKIWHTISRQCLRT-IQHKGPV 323
S D LKIW RT I H+ V
Sbjct: 158 SQDMQLKIWSVKDGSNPRTLIGHRATV 184
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 49 YVLGVEKGKPMIQAWPVNSQEKAQLRLICPGRISSMQASPDA-AYIAVSIETKLHMWQIS 107
++LG +G I+ N + ++ I+ ++ P A I+ S + +L +W +
Sbjct: 112 FILGTTEGD--IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 108 SGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQ 147
G T H +T + +++ DGTI +W+
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 266 IQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIW--------HTISRQ 312
++D ++ IGH VT ++ G +LS+S D T+++W HT +R+
Sbjct: 165 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 219
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 49 YVLGVEKGKPMIQAWPVNSQEKAQLRLICPGRISSMQASPDA-AYIAVSIETKLHMWQIS 107
++LG +G I+ N + ++ I+ ++ P A I+ S + +L +W +
Sbjct: 109 FILGTTEGD--IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 108 SGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQ 147
G T H +T + +++ DGTI +W+
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 22/87 (25%)
Query: 243 MGTSEGVIK----SFCL-RQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSS 297
+GT+EG IK +F L R++ + H ++T L +G L+SS
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQ----------------AHVSEITKLKFFPSGEALISS 154
Query: 298 SADETLKIWHTISRQCLRT-IQHKGPV 323
S D LKIW RT I H+ V
Sbjct: 155 SQDMQLKIWSVKDGSNPRTLIGHRATV 181
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 118 HYQPITIVKWSA-DSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPL 176
H P+ + W + N I +G ED T+ VW++ G V L EP+
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI---------------PDGGLVLPLREPV 124
Query: 177 HVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRL-TCVAFD 235
H+ V V A++ + S D ++D+ TG +L+L D T + D
Sbjct: 125 ITLEGHTKRVGIVAWHPT-AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183
Query: 236 GTEDNIYMGTS 246
+ D + TS
Sbjct: 184 WSRDGALICTS 194
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 48/263 (18%)
Query: 56 GKPMIQAW----PVNSQEKAQLRLICPGR---ISSMQASPDAAYIAVSIE-TKLHMWQIS 107
GK ++ W P N +QL C R I S + PD + V E + L +W ++
Sbjct: 70 GKGCVKVWDISHPGNKSPVSQLD--CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127
Query: 108 SG--RLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSS 165
+ R+ A +S + S DS + DG I VW L QT+ G
Sbjct: 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQG-- 181
Query: 166 GKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLIL 225
H+ + + +S G K + D T + +DL G L
Sbjct: 182 ----------------HTDGASCIDISNDGTKLWTGGL--DNTVRSWDLREGRQLQQHDF 223
Query: 226 DTRLTCVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSL 285
+++ + + T + + +G ++ + + P H+ HE V SL
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHL-----------HESCVLSL 271
Query: 286 SCSITGITLLSSSADETLKIWHT 308
+ G +S+ D L W T
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRT 294
>pdb|3IB5|A Chain A, Crystal Structure Of Sex Pheromone Precursor (Yp_536235.1)
From Lactobacillus Salivarius Subsp. Salivarius Ucc118
At 1.35 A Resolution
Length = 348
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 246 SEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKI 305
+E IKS+ L P T D+ + + + F +K+V + +I+ +T D+TL+
Sbjct: 224 TETNIKSYVL---PATEDNKLPNDNDSTSFDNFQKEVKNFFPNISNVTGQGQYKDKTLQG 280
Query: 306 WH-TISRQ 312
H TI+ Q
Sbjct: 281 LHITITTQ 288
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ-HKGPV 323
GHE+ +T + + G L S S D + +W++++ + L T+ H G +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI 77
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 81 ISSMQASPDAAYIAVSI--ETKLHMWQISSGRLLATASSHYQP----ITIVKWSADSNFI 134
+ ++ SPD+ +++ + K+ + SG L +P I + W DS
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKF 267
Query: 135 VTGGEDGTICVWQLSRLICKQ 155
T G D TI VW ++ C Q
Sbjct: 268 ATVGADATIRVWDVTTSKCVQ 288
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 81 ISSMQASPDAAYIAVSI--ETKLHMWQISSGRLLATASSHYQP----ITIVKWSADSNFI 134
+ ++ SPD+ +++ + K+ + SG L +P I + W DS
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKF 267
Query: 135 VTGGEDGTICVWQLSRLICKQ 155
T G D TI VW ++ C Q
Sbjct: 268 ATVGADATIRVWDVTTSKCVQ 288
>pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
pdb|3HAZ|B Chain B, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
Length = 1001
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 236 GTED---NIYMGTSEGV---IKSFCLRQVP--RTRDHHIQDSTSNPDFIGHEKQVTSL 285
G ED + T EG+ + + L +VP RT D I+D DFI HE + T+
Sbjct: 59 GVEDMLREFALSTKEGLALMVLAEALLRVPDARTADQFIEDKLGEGDFIHHETKSTAF 116
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ 318
GH +V S + G ++S D +LK+W S++ + I+
Sbjct: 195 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 63 WPVNSQEKAQLRLICPGRISSMQASPDAAYIA------VSIETKLHMWQI-SSGRLLATA 115
W E A +C + + D A+++ S + +W+I LL
Sbjct: 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNK 132
Query: 116 SSHYQPITIVKW---SADSNFIVTGGEDGTICVWQLSR 150
+ Y+ IVK +D V+GG+D ++ VW LS+
Sbjct: 133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ 318
GH +V S + G ++S D +LK+W S++ + I+
Sbjct: 158 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ 318
GH +V S + G ++S D +LK+W S++ + I+
Sbjct: 154 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ 318
GH +V S + G ++S D +LK+W S++ + I+
Sbjct: 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 277 GHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ 318
GH +V S + G ++S D +LK+W S++ + I+
Sbjct: 158 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 128 SADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVT 187
S N +V+G D T+ VW +++ C L++ S H+ +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKC----------------------LYILSGHTDRIY 314
Query: 188 HVTLSKLGAKSRVASVSHDRTCKIFDLCTGE 218
+ R S S D T +I+DL GE
Sbjct: 315 STIYDH--ERKRCISASXDTTIRIWDLENGE 343
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 79 GRISSMQASPDAAYIAVSIETKLHMWQISSG---RLLATASSHYQPITIVKWSADSNFIV 135
G + +++ + ++ S + + +W I G + +S + + IV++ + +IV
Sbjct: 163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIV 221
Query: 136 TGGEDGTICVWQLSR 150
TG D T+ VW+L +
Sbjct: 222 TGSRDNTLHVWKLPK 236
>pdb|3MC4|A Chain A, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
TRANSFERASE Hexapeptide Repeat: Serine
O-Acetyltransferase From Brucella Melitensis
pdb|3MC4|B Chain B, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
TRANSFERASE Hexapeptide Repeat: Serine
O-Acetyltransferase From Brucella Melitensis
Length = 287
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 284 SLSCSITGITLLSSSADETLKIWHTISRQCLRTIQHKGPVLGAFL 328
+L G +++ D+ IWH+I + ++ PVLGAFL
Sbjct: 11 TLEAQTQGPGSMNAGLDQVDPIWHSIRAEAEEATRND-PVLGAFL 54
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 104 WQISSGRLLATASSHYQPITIVKWSADSNFIVT------GGEDGTICVW--QLSRLICKQ 155
W +S +L+++ S + + I+ W ++ N ++ ++ CVW L +
Sbjct: 345 WMLSDFQLISSEGSQSKFLLIIAWKSNLNTVIQKCNLSLDQDESFSCVWSHSLDSFSLIE 404
Query: 156 TVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLC 215
F +P + G H+ + H+ + + ++ L ++ + VS ++ K F
Sbjct: 405 KTFFDVPTNMSSGDISEIWLQHIFA-HNTSIESIQVALLSFQNSSSQVSKNKLDK-FGAL 462
Query: 216 TGEDLLSLILDTRLTCVAFDGTED 239
T +L + +L + ++ + + D
Sbjct: 463 TISELKNAVLSSIVSTIQIEPNSD 486
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 104 WQISSGRLLATASSHYQPITIVKWSADSNFIVT------GGEDGTICVW--QLSRLICKQ 155
W +S +L+++ S + + I+ W ++ N ++ ++ CVW L +
Sbjct: 347 WMLSDFQLISSEGSQSKFLLIIAWKSNLNTVIQKCNLSLDQDESFSCVWSHSLDSFSLIE 406
Query: 156 TVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLC 215
F +P + G H+ + H+ + + ++ L ++ + VS ++ K F
Sbjct: 407 KTFFDVPTNMSSGDISEIWLQHIFA-HNTSIESIQVALLSFQNSSSQVSKNKLDK-FGAL 464
Query: 216 TGEDLLSLILDTRLTCVAFDGTED 239
T +L + +L + ++ + + D
Sbjct: 465 TISELKNAVLSSIVSTIQIEPNSD 488
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 104 WQISSGRLLATASSHYQPITIVKWSADSNFIVT------GGEDGTICVW--QLSRLICKQ 155
W +S +L+++ S + + I+ W ++ N ++ ++ CVW L +
Sbjct: 347 WMLSDFQLISSEGSQSKFLLIIAWKSNLNTVIQKCNLSLDQDESFSCVWSHSLDSFSLIE 406
Query: 156 TVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLC 215
F +P + G H+ + H+ + + ++ L ++ + VS ++ K F
Sbjct: 407 KTFFDVPTNMSSGDISEIWLQHIFA-HNTSIESIQVALLSFQNSSSQVSKNKLDK-FGAL 464
Query: 216 TGEDLLSLILDTRLTCVAFDGTED 239
T +L + +L + ++ + + D
Sbjct: 465 TISELKNAVLSSIVSTIQIEPNSD 488
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,496,336
Number of Sequences: 62578
Number of extensions: 412141
Number of successful extensions: 1758
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 398
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)