RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10867
(343 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 93.2 bits (232), Expect = 8e-22
Identities = 69/250 (27%), Positives = 111/250 (44%), Gaps = 40/250 (16%)
Query: 78 PGRISSMQASPDAAYIAV-SIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVT 136
G ++ + SPD +A S + + +W + +G LL T H P+ V SAD ++ +
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 137 GGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGA 196
G D TI +W L C +T+ H+ V+ V S G
Sbjct: 69 GSSDKTIRLWDLETGECVRTLT----------------------GHTSYVSSVAFSPDG- 105
Query: 197 KSRVASVSHDRTCKIFDLCTGEDLLSL--ILDTRLTCVAFDGTEDNIYMGTSEGVIKSFC 254
++S S D+T K++D+ TG+ L +L D + VAF + + +G IK +
Sbjct: 106 -RILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-VNSVAFSPDGTFVASSSQDGTIKLWD 163
Query: 255 LRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCL 314
LR GH +V S++ S G LLSSS+D T+K+W + +CL
Sbjct: 164 LRTGKCVA-----------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212
Query: 315 RTIQ-HKGPV 323
T++ H+ V
Sbjct: 213 GTLRGHENGV 222
Score = 91.6 bits (228), Expect = 3e-21
Identities = 85/311 (27%), Positives = 127/311 (40%), Gaps = 48/311 (15%)
Query: 7 VAFSYDGS--------GAISVWEPKGGTLLMSYKGASVLSPHSMCLLGNDYVLGVEKGKP 58
VAFS DG G I VW+ + G LL + KG + Y+ K
Sbjct: 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDK- 73
Query: 59 MIQAWPVNSQEKAQLRLIC-PGRISSMQASPDAAYIAVSIE-TKLHMWQISSGRLLATAS 116
I+ W + + E + L +SS+ SPD ++ S + +W + +G+ L T
Sbjct: 74 TIRLWDLETGECVR-TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132
Query: 117 SHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPL 176
H + V +S D F+ + +DGTI +W L C T + G
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT----LTG------------- 175
Query: 177 HVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDT-RLTCVAFD 235
H+ V V S G ++ S S D T K++DL TG+ L +L + VAF
Sbjct: 176 -----HTGEVNSVAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 236 GTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLL 295
+ G+ +G I+ + LR + GH VTSL+ S G L
Sbjct: 229 PDGYLLASGSEDGTIRVWDLR--TGECVQTLS---------GHTNSVTSLAWSPDGKRLA 277
Query: 296 SSSADETLKIW 306
S SAD T++IW
Sbjct: 278 SGSADGTIRIW 288
Score = 84.7 bits (210), Expect = 9e-19
Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 38/246 (15%)
Query: 81 ISSMQASPDAAYIA-VSIETKLHMWQISSGRLLATASSHYQPITIVKWSADSNFIVTGGE 139
+ + AS D Y+A S + + +W + +G + T + H ++ V +S D + +
Sbjct: 54 VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113
Query: 140 DGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSR 199
D TI VW + C T + G H+ V V S +
Sbjct: 114 DKTIKVWDVETGKCLTT----LRG------------------HTDWVNSVAFS--PDGTF 149
Query: 200 VASVSHDRTCKIFDLCTGEDLLSLILDTR-LTCVAFDGTEDNIYMGTSEGVIKSFCLRQV 258
VAS S D T K++DL TG+ + +L T + VAF + + +S+G IK + L
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST- 208
Query: 259 PRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTISRQCLRTIQ 318
+ GHE V S++ S G L S S D T+++W + +C++T+
Sbjct: 209 ----GKCLGT------LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258
Query: 319 -HKGPV 323
H V
Sbjct: 259 GHTNSV 264
Score = 74.7 bits (184), Expect = 3e-15
Identities = 55/214 (25%), Positives = 77/214 (35%), Gaps = 77/214 (35%)
Query: 111 LLATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVT 170
L T H +T V +S D + TG DGTI VW L +T KG
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---------LKG-- 49
Query: 171 GLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLT 230
H+ PV V S + +AS S D+T +++DL TGE
Sbjct: 50 -----------HTGPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGE------------ 84
Query: 231 CVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSIT 290
C+R GH V+S++ S
Sbjct: 85 -----------------------CVRT-----------------LTGHTSYVSSVAFSPD 104
Query: 291 GITLLSSSADETLKIWHTISRQCLRTIQ-HKGPV 323
G L SSS D+T+K+W + +CL T++ H V
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138
Score = 60.0 bits (146), Expect = 3e-10
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 36/209 (17%)
Query: 10 SYDGSGAISVWEPKGGTLLMSYKG----ASVLSPHSMCLLGNDYVLGVEKGKPMIQAWPV 65
S D + I VW+ + G L + +G + ++ +V + I+ W +
Sbjct: 112 SRDKT--IKVWDVETGKCLTTLRGHTDWVNSVAFSP----DGTFVASSSQDG-TIKLWDL 164
Query: 66 NSQEKAQLRLICPGRISSMQASPDAAYIAVSIETK-LHMWQISSGRLLATASSHYQPITI 124
+ + G ++S+ SPD + S + +W +S+G+ L T H +
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224
Query: 125 VKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHSL 184
V +S D + +G EDGTI VW L C QT+ S H+
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----------------------SGHTN 262
Query: 185 PVTHVTLSKLGAKSRVASVSHDRTCKIFD 213
VT + S G R+AS S D T +I+D
Sbjct: 263 SVTSLAWSPDG--KRLASGSADGTIRIWD 289
Score = 54.3 bits (131), Expect = 2e-08
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 6/146 (4%)
Query: 5 NEVAFSYDGSGAISVWEPKGGTLLMSYKG--ASVLSPHSMCLLGNDYVLGVEKGKPMIQA 62
S G I +W+ + G + + G V +S+ + L I+
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV---NSVAFSPDGEKLLSSSSDGTIKL 203
Query: 63 WPVNSQEKAQLRLICPGRISSMQASPDAAYIAV-SIETKLHMWQISSGRLLATASSHYQP 121
W +++ + ++S+ SPD +A S + + +W + +G + T S H
Sbjct: 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
Query: 122 ITIVKWSADSNFIVTGGEDGTICVWQ 147
+T + WS D + +G DGTI +W
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 90.5 bits (223), Expect = 4e-20
Identities = 83/343 (24%), Positives = 139/343 (40%), Gaps = 52/343 (15%)
Query: 2 SLLNEVAFSYDGS--------GAISVWEPKGGTL----LMSYKGASVLSPHSMCLLGNDY 49
+ +AFS DG G I +W+ G L +SV GN
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125
Query: 50 VLGVEKGKPMIQAWPVNSQEKAQLRLIC-PGRISSMQASPDAAYIAVSIETK--LHMWQI 106
+L ++ W +++ K L ++S+ SPD +A + +W +
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 107 SSGRLLATASSHYQPITIVKWSADSNF-IVTGGEDGTICVWQLSRLICKQTVAFGIPGSS 165
+G+ L+T + H P++ + +S D I +G DGTI +W LS ++ G
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG----- 240
Query: 166 GKGVTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLIL 225
H S S + S G S +AS S D T +++DL + LL +
Sbjct: 241 -----------HSDSVVS------SFSPDG--SLLASGSSDGTIRLWDLRSSSSLLRTLS 281
Query: 226 --DTRLTCVAFDGTEDNIYMGTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVT 283
+ + VAF + G+S+G ++ + L S+ GHE V+
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET---------GKLLSSLTLKGHEGPVS 332
Query: 284 SLSCSITGITLLSS-SADETLKIWHTISRQCLRTIQHKGPVLG 325
SLS S G L+S S D T+++W + + L+T++ VL
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375
Score = 75.9 bits (185), Expect = 4e-15
Identities = 68/304 (22%), Positives = 124/304 (40%), Gaps = 36/304 (11%)
Query: 7 VAFSYDGSGAISVWEPKGGTLLMSYKGAS-VLSPHSMCLLGNDYVLGVEKGKPMIQAWPV 65
+A G I +W+ + G L + G + +S + G + I+ W +
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG-TIRLWDL 228
Query: 66 NSQEKAQLRLICPGRISSMQASPDAAYIAV-SIETKLHMWQISSGR-LLATASSHYQPIT 123
++ + + L SPD + +A S + + +W + S LL T S H +
Sbjct: 229 STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288
Query: 124 IVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHS 183
V +S D + +G DGT+ +W L TG H
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLE--------------------TGKLLSSLTLKGHE 328
Query: 184 LPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGTEDNIYM 243
PV+ ++ S G+ V+ S D T +++DL TG+ L +L + + V+F +
Sbjct: 329 GPVSSLSFSPDGSLL-VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSS 387
Query: 244 GTSEGVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETL 303
G+++G ++ + + + + GH +VTSL S G +L S S+D T+
Sbjct: 388 GSTDGTVRLW-----------DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436
Query: 304 KIWH 307
++W
Sbjct: 437 RLWD 440
Score = 61.6 bits (148), Expect = 2e-10
Identities = 67/309 (21%), Positives = 113/309 (36%), Gaps = 52/309 (16%)
Query: 12 DGSGAISVWEPKGGTLLMSYKGASVLSPHSMCLLG------NDYVLGVEKGKPMIQAWPV 65
G + +W+ K L HS + + I+ W +
Sbjct: 131 SLDGTVKLWDLST-----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 66 NSQEKAQLRLICPGRISSMQASPDAAYIAVSIE--TKLHMWQISSGRLLATASSHYQPIT 123
+ + +SS+ SPD + S + +W +S+G+LL + S +
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 124 IVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVAFGIPGSSGKGVTGLTEPLHVKSQHS 183
+ +S D + + +G DGTI +W L + L S HS
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLR---------------------SSSSLLRTLSGHS 284
Query: 184 LPVTHVTLSKLGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDT---RLTCVAFDGTEDN 240
V V S G +AS S D T +++DL TG+ L SL L ++ ++F
Sbjct: 285 SSVLSVAFSPDG--KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 241 IYMGTSE-GVIKSFCLRQVPRTRDHHIQDSTSNPDFIGHEKQVTSLSCSITGITLLSSSA 299
+ G S+ G I+ + LR + + V S+S S G + S S
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLK------------TLEGHSNVLSVSFSPDGRVVSSGST 390
Query: 300 DETLKIWHT 308
D T+++W
Sbjct: 391 DGTVRLWDL 399
Score = 50.5 bits (119), Expect = 6e-07
Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 42/239 (17%)
Query: 117 SHYQPITIVKWSADSNFIVTGGEDGTICVWQL------------SRLICKQTVAFGIP-- 162
H IT + +S D +++G DGTI +W L +A P
Sbjct: 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122
Query: 163 ------GSSGKG------VTGLTEPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCK 210
SS G ++ + + HS VT + S G K + S D T K
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIK 181
Query: 211 IFDLCTGEDLLSLILDTR-LTCVAFDGTEDNIYMGTSE-GVIKSFCLRQVPRTRDHHIQD 268
++DL TG+ L +L T ++ +AF + S G I+ + L R
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR------ 235
Query: 269 STSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWHTIS-RQCLRTIQ-HKGPVLG 325
GH V S S S G L S S+D T+++W S LRT+ H VL
Sbjct: 236 ----STLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Score = 45.1 bits (105), Expect = 4e-05
Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 12/166 (7%)
Query: 4 LNEVAFSYDGS--------GAISVWEPKGGTLLMSYKGASVLSP--HSMCLLGNDYVLGV 53
+ VAFS DG G + +W+ + G LL S P ++
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346
Query: 54 EKGKPMIQAWPVNSQEKAQLRLICPGRISSMQASPDAAYIA-VSIETKLHMWQISSGRLL 112
I+ W + + K L + S+ SPD ++ S + + +W +S+G LL
Sbjct: 347 GSDDGTIRLWDLRT-GKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
Query: 113 ATASSHYQPITIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTVA 158
H +T + +S D + +G D TI +W L + + +
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
Score = 31.6 bits (70), Expect = 0.71
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 268 DSTSNPDFIGHEKQVTSLSCSITGITLLSSSADETLKIWH-TISRQCLRTIQHK 320
S+ GHE +TS++ S G LLS S+D T+K+W + +++++
Sbjct: 54 PDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL 107
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 45.8 bits (109), Expect = 3e-07
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 108 SGRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVW 146
SG LL T H P+T V +S D ++ +G +DGTI +W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 34.2 bits (79), Expect = 0.004
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 275 FIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
GH VTS++ S G L S S D T+K+W
Sbjct: 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 31.5 bits (72), Expect = 0.037
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 174 EPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFD 213
E L H+ PVT V S G +AS S D T K++D
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDG--KYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 43.1 bits (102), Expect = 3e-06
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 109 GRLLATASSHYQPITIVKWSADSNFIVTGGEDGTICVW 146
G+LL T H P+T V +S D N + +G +DGT+ VW
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 36.9 bits (86), Expect = 5e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 275 FIGHEKQVTSLSCSITGITLLSSSADETLKIWH 307
GH VTS++ S G L S S D T+++W
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 32.3 bits (74), Expect = 0.020
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 174 EPLHVKSQHSLPVTHVTLSKLGAKSRVASVSHDRTCKIFD 213
+ L H+ PVT V S G + +AS S D T +++D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVWD 39
>gnl|CDD|227282 COG4946, COG4946, Uncharacterized protein related to the
periplasmic component of the Tol biopolymer transport
system [Function unknown].
Length = 668
Score = 34.8 bits (80), Expect = 0.071
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 79 GRISSMQASPDAAYIAVSIETKLHMW--QISSGRLLATASSHYQPITIVKWSADSNFIVT 136
G I +++ SPD + V+ + +W I +G + S Y IT W +S +I
Sbjct: 402 GNIEAVKVSPDGKKVVVA-NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAY 460
Query: 137 GGEDG 141
+G
Sbjct: 461 AFPEG 465
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 33.4 bits (77), Expect = 0.12
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 194 LGAKSRVASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDGTE 238
L A + V +I DL G L L+L R G E
Sbjct: 36 LAAFAPVPKK-----GRILDLGAGNGALGLLLAQRTEKAKIVGVE 75
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 32.4 bits (73), Expect = 0.37
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 22/113 (19%)
Query: 200 VASVSHDRTCKIFDLCTGEDLLSLILDTRLTCVAFDG-TEDNIYMGTSEGVIKSFCLRQV 258
+AS S D + K++ + G + ++ + CV F + ++ G+++ + + LR
Sbjct: 591 LASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR-- 648
Query: 259 PRTRDHHIQDSTSNPDF-----IGHEKQVTSLSCSITGITLLSSSADETLKIW 306
NP IGH K V+ + + TL+SSS D TLK+W
Sbjct: 649 -------------NPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLW 687
Score = 30.8 bits (69), Expect = 1.2
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 101 LHMWQISSGRLLATASSHYQPI-TIVKWSADSNFIVTGGEDGTICVWQLSRLICKQTV-- 157
+ +W ++ +L+ H + + +I SAD + +G +DG++ +W +++ + T+
Sbjct: 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616
Query: 158 -----AFGIPGSSGKGVT-GLTE-------------PLHVKSQHSLPVTHVTLSKLGAKS 198
P SG+ + G + PL HS V++V + S
Sbjct: 617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV---RFVDSS 673
Query: 199 RVASVSHDRTCKIFDL 214
+ S S D T K++DL
Sbjct: 674 TLVSSSTDNTLKLWDL 689
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 31.0 bits (70), Expect = 1.1
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 67 SQEKAQLRLICPGRISSMQASPDAAYIAVSIETKLHMWQISSGRLLATASSHYQ---PIT 123
S K L G +S ++ SPD + +A + Q+ L+ + ++
Sbjct: 48 SDGKTVRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQL---YLVDVGGLITKTAFGVS 104
Query: 124 IVKWSADSNFIVTGGEDGTICV 145
+WS D + I +G
Sbjct: 105 DARWSPDGDRIAFLTAEGASKR 126
>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy
production and conversion].
Length = 598
Score = 30.0 bits (68), Expect = 1.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 63 WPVNSQEKAQLRLICPGRISSMQASPDAAYIAV 95
+PVN + L + ++ + +PD A I V
Sbjct: 42 YPVNPKYDEVLGVKAYTSVADLPDAPDLAVIVV 74
>gnl|CDD|223277 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal
structure and biogenesis].
Length = 61
Score = 27.2 bits (61), Expect = 2.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 309 ISRQCLRTIQHKGPVLG 325
+ R C R + HKG + G
Sbjct: 39 LCRICFRELAHKGEIPG 55
>gnl|CDD|201462 pfam00830, Ribosomal_L28, Ribosomal L28 family. The ribosomal 28
family includes L28 proteins from bacteria and
chloroplasts. The L24 protein from yeast also contains a
region of similarity to prokaryotic L28 proteins. L24
from yeast is also found in the large ribosomal subunit.
Length = 61
Score = 26.7 bits (60), Expect = 3.3
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 292 ITLLSSSADETLKIWHTISRQCLRTIQHKG 321
L S S +++ +S + LRTI KG
Sbjct: 34 KRLWSESLGRWVRLK--VSTKALRTIDKKG 61
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 29.1 bits (66), Expect = 3.3
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 9 FSYDGSGA---ISVWEPKGGTLLMSYKGASVLS 38
F +GSG S+W+ GG L G + LS
Sbjct: 236 FGDNGSGMHVHQSLWDKDGGNLFADEDGYAGLS 268
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 28.5 bits (64), Expect = 5.1
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 287 CSITGITLLSSSADETLKIWHTISRQCLRTIQHKGP 322
C I GI + D I + + ++H+GP
Sbjct: 2 CGIAGILNFKNLIDAKSIIE-----EMTKLLRHRGP 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.407
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,731,528
Number of extensions: 1520076
Number of successful extensions: 1090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1052
Number of HSP's successfully gapped: 31
Length of query: 343
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 245
Effective length of database: 6,590,910
Effective search space: 1614772950
Effective search space used: 1614772950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)