BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10868
(649 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFL|A Chain A, Crystal Structure Of The Efc Domain Of Formin-binding
Protein 17
Length = 305
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 189/339 (55%), Gaps = 56/339 (16%)
Query: 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKK---EEEDYQYS 60
DQ+DNL HTQ GID LEKY F+++R IE+ YA +LR L K YQPKK EEE+Y+Y+
Sbjct: 14 DQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYT 73
Query: 61 TCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLE 120
+CKAF L+E D AGQHEVI+EN II ++ +V++
Sbjct: 74 SCKAFISNLNEXNDYAGQHEVISENXASQIIVDLARYVQE-------------------- 113
Query: 121 NQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALE 180
L+ R + DG + + LE
Sbjct: 114 ---------------------------------LKQERKSNFHDGRKAQQHIETCWKQLE 140
Query: 181 RALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQ 240
+ + +E+ ++AD+A +++++ DAD+ +++A+VEK R I+ Q ED+K +Y++ LQ
Sbjct: 141 SSKRRFERDCKEADRAQQYFEKXDADINVTKADVEKARQQAQIRHQXAEDSKADYSSILQ 200
Query: 241 RANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKA 300
+ N Q ++Y +P +F ++QE +E+R+ A ++++V PII +CLDGI+KA
Sbjct: 201 KFNHEQHEYYHTHIPNIFQKIQEXEERRIVRXGESXKTYAEVDRQVIPIIGKCLDGIVKA 260
Query: 301 ADQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGGEST 339
A+ I++K DS LVIE YKSGF PPGDI FED ++ + T
Sbjct: 261 AESIDQKNDSQLVIEAYKSGFEPPGDIEFEDYTQPXKRT 299
>pdb|2EFK|A Chain A, Crystal Structure Of The Efc Domain Of Cdc42-Interacting
Protein 4
Length = 301
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 172/339 (50%), Gaps = 56/339 (16%)
Query: 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPK---KEEEDYQYST 61
Q++ L HTQ G+D L++Y F+++R +E YA +LR LVK Y PK K++ + ++S
Sbjct: 8 QFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQ 67
Query: 62 CKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLEN 121
++F +L EV D AGQ E++AENL V + E+T + ++ K+E
Sbjct: 68 QQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEXKQE----------------- 110
Query: 122 QVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALER 181
R H Q+G + L N LE
Sbjct: 111 ------------------------------------RKXHFQEGRRAQQQLENGFKQLEN 134
Query: 182 ALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQR 241
+ + +E+ R+A+KA + +R D D+ ++A+VEK + ++S E++K EYA QLQR
Sbjct: 135 SKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHXAEESKNEYAAQLQR 194
Query: 242 ANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA 301
N Q Y P++F +LQ+ DE+R + + E +V PII +CL+G AA
Sbjct: 195 FNRDQAHFYFSQXPQIFDKLQDXDERRATRLGAGYGLLSEAELEVVPIIAKCLEGXKVAA 254
Query: 302 DQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGGESTP 340
+ ++ K DS ++IE +KSGF PGD+ FED S+ P
Sbjct: 255 NAVDPKNDSHVLIELHKSGFARPGDVEFEDFSQPXNRAP 293
>pdb|2KE4|A Chain A, The Nmr Structure Of The Tc10 And Cdc42 Interacting Domain
Of Cip4
Length = 98
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 65/90 (72%)
Query: 377 GSNGKDDFSNLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMI 436
G + +DFS+LPP Q++K+LQQ++EE +Q+E RE L KMK VYE P +GDP +
Sbjct: 1 GPHMTEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL 60
Query: 437 EGQLSETDSRLEKLRGELQKYQTYMEESEA 466
E Q++ET S +E+L+ E+QKY+ ++ E+E+
Sbjct: 61 EPQIAETLSNIERLKLEVQKYEAWLAEAES 90
>pdb|2CT4|A Chain A, Solution Strutcure Of The Sh3 Domain Of The Cdc42-
Interacting Protein 4
Length = 70
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
A+Y FE +SEG+I M +GE+L ++E D+GDGWTRVRR+ + EG+VPTSY++ +
Sbjct: 12 AIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSYLRVTS 65
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
K LY + + I + G+++ ++ D G GWT++ T E G VPT+YI+
Sbjct: 5 KVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 72
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 72
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 6 ALYDYEAWTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 58
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 62
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 61
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+ALY +EA +E + + GE+ I+ +GD W VR T E G++P+ Y+ +
Sbjct: 11 EALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEVRSLTTGETGYIPSPYLAPV 64
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 57
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 58
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 5 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 57
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 58
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 62
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 61
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 60
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA +E + + GE+ I+ +GD W R T E G++P++Y+ +
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGD-WWEARSLTTGETGYIPSNYVAPV 60
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY + AT + + GE+ I++ D GD W R T E G++P++Y+ +
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILDGDSGD-WWEARSLTTGETGYIPSNYVAPV 63
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY + AT + + GE+ I+E GD W R T E G++P++Y+ +
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGD-WWEARSLTTGETGYIPSNYVAPV 63
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
G +A+Y +EA + I + G+ + +I D G GWT + D +G PTSY +
Sbjct: 1 GAMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWT--YGECDGLKGLFPTSYCK 54
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+ALY +EA +E + + GE+ I+ +GD W R T E G++P+ Y+ +
Sbjct: 9 EALYDYEARTEDDLSFHKGEKFQILNSSEGDWW-EARSLTTGETGYIPSIYLAPV 62
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W T + G++P++Y+
Sbjct: 9 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWL-AHSLTTGQTGYIPSNYV 61
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W T + G++P++Y+
Sbjct: 9 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWL-AHSLTTGQTGYIPSNYV 61
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 585 PLGT-AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
P GT A Y F T+E +P G+ L I+ + + W + + + EG +P +Y+Q
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKV-GREGIIPANYVQ 66
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W T G++P++Y+
Sbjct: 2 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWL-AHSLTTGRTGYIPSNYV 54
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its Relationship
To Sh2 In The Sh(32) Construct, 20 Structures
Length = 62
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI ++
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPVS 62
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 585 PLGT-AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
P GT A Y F T+E +P G+ L I+ + + W + + + EG +P +Y+Q
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKV-GREGIIPANYVQ 66
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 585 PLGT-AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
P GT A Y F T+E +P G+ L I+ + + W + + + EG +P +Y+Q
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKV-GREGIIPANYVQ 66
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
AL+ +E + +G + GE+L I+E Q W + + T +EGF+P +++
Sbjct: 5 ALHSYEPSHDGDLGFEKGEQLRILE--QSGEWWKAQSLTTGQEGFIPFNFV 53
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSTYITPV 61
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W T + G++P++Y+
Sbjct: 5 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWL-AHSLTTGQTGYIPSNYV 57
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
AL+ +E + +G + GE+L I+E Q W + + T +EGF+P +++
Sbjct: 9 ALHSYEPSHDGDLGFEKGEQLRILE--QSGEWWKAQSLTTGQEGFIPFNFV 57
>pdb|3EG3|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-sh3 Domain
pdb|3EGU|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Length = 63
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSAYITPV 61
>pdb|2O88|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|2O88|B Chain B, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
Length = 58
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 5 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSAYITPV 56
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
AL+ +E + +G + GE+L I+E Q W + + T +EGF+P +++
Sbjct: 17 ALHSYEPSHDGDLGFEKGEQLRILE--QSGEWWKAQSLTTGQEGFIPFNFV 65
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
AL+ +E + +G + GE+L I+E Q W + + T +EGF+P +++
Sbjct: 11 ALHSYEPSHDGDLGFEKGEQLRILE--QSGEWWKAQSLTTGQEGFIPFNFV 59
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
AL+ +E + +G + GE+L I+E Q W + + T +EGF+P +++
Sbjct: 11 ALHSYEPSHDGDLGFEKGEQLRILE--QSGEWWKAQSLTTGQEGFIPFNFV 59
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
AL+ +E + +G + GE+L I+E Q W + + T +EGF+P +++
Sbjct: 17 ALHSYEPSHDGDLGFEKGEQLRILE--QSGEWWKAQSLTTGQEGFIPFNFV 65
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 87 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPV 138
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 7 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPV 58
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 9 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPV 60
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 5 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPV 56
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 45 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPV 96
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W T + G++P++Y+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLST-GQTGYIPSNYV 56
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 48 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPV 99
>pdb|3EG1|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG1|B Chain B, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG2|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Length = 63
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP+ YI +
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSQYITPV 61
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY F A+ + ++ + GE+L ++ + W QT + +G+VP++YI +
Sbjct: 13 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYITPV 64
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
ALY +EA + + GE II +GD W R + G++P++Y+
Sbjct: 10 ALYDYEARTTEDLSFKKGERFQIINNTEGD-WWEARSIATGKNGYIPSNYV 59
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++A + + GE+ I++ W R T E G++P++Y+ +
Sbjct: 11 ALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAPV 64
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
ALY +EA + + GE II +GD W R + G++P++Y+
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQIINNTEGD-WWEARSIATGKSGYIPSNYV 81
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A A + F AT++ + G+ L I+ ++ W R + D +EG +P++YI+
Sbjct: 3 AIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRA--ELDGKEGLIPSNYIE 54
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W + + G++P++Y+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWL-AHSLSTGQTGYIPSNYV 56
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W + + G++P++Y+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWL-AHSLSTGQTGYIPSNYV 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W + + G++P++Y+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWL-AHSLSTGQTGYIPSNYV 56
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
+ALY + A + + + G+ L +I L+ DGW V R + + GFVP SY++ ++
Sbjct: 12 RALYDYTAQNPDELDLSAGDILEVI-LEGEDGWWTVER--NGQRGFVPGSYLEKLS 64
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
T ALY +E+ +E + GE L I+ +GD W + + G++P++Y+
Sbjct: 87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWL-AHSLSTGQTGYIPSNYV 139
>pdb|3LLL|A Chain A, Crystal Structure Of Mouse Pacsin2 F-Bar Domain
pdb|3LLL|B Chain B, Crystal Structure Of Mouse Pacsin2 F-Bar Domain
Length = 287
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 179 LERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQ 238
+E A K + A ++ A+ + AD L+ +++K + + Q TK +Y
Sbjct: 137 VEAAKKAHHTACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKDKYEKS 196
Query: 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHS------ANIEKKVFPIINQ 292
L+ ++ Q Y + M +VF Q Q+ +EKR+R R ++ +N+ + I +
Sbjct: 197 LKELDQTTPQ-YMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAS--YKTIYR 253
Query: 293 CLDGIIKAADQI 304
L+ IKAAD +
Sbjct: 254 ELEQSIKAADAV 265
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVP---TSYIQ 642
A ALY FE ++ + + +G+ ++I G GW ++ S+ G VP SYIQ
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFI-SYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 590 KALYPFEAT-SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+A Y F + S +P+ G+ ++I D+ GW+ + S+EG+VPT+Y+
Sbjct: 6 EAAYDFPGSGSSSELPLKKGDIVFI-SRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 590 KALYPFEAT-SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
+A Y F + S +P+ G+ +YI ++ GW+ + S+EG+VPT+Y++
Sbjct: 4 EAAYDFPGSGSPSELPLKKGDVIYITR-EEPSGWSLGKLLDGSKEGWVPTAYMK 56
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 590 KALYPFEAT-SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+A Y F + S +P+ G+ ++I D+ GW+ + S+EG+VPT+Y+
Sbjct: 7 EAAYDFPGSGSSSELPLKKGDIVFI-SRDEPSGWSLAKLLDGSKEGWVPTAYM 58
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S G + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 11 ALYDYQEKSPGEVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYVKKL 61
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 590 KALYPFEAT-SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+A Y F + S +P+ G+ ++I D+ GW+ + S+EG+VPT+Y+
Sbjct: 6 EAAYDFPGSGSSSELPLKKGDIVFI-SRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALYP++ + GE++ ++E + G+ W + + +EGF+P++Y+ +
Sbjct: 12 ALYPYDGIHPDDLSFKKGEKMKVLE-EHGE-WWKAKSLLTKKEGFIPSNYVAKL 63
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVP---TSYIQ 642
A ALY FE ++ + + +G+ ++I G GW ++ S+ G VP SYIQ
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFI-SYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>pdb|3I2W|A Chain A, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
pdb|3I2W|B Chain B, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
Length = 290
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 26 FIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAEN 85
I++R IE YA LR K + E+ +T A+K VL E ++ H I +N
Sbjct: 30 LIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHXKIKDN 89
Query: 86 LQVFIIKEVTIFVKDFKEERKKH----------LQDGARMMNLLENQVIA-LERARKNYD 134
L +V +K +++E H L+D + +++A +E+A+ +Y
Sbjct: 90 L----CNDVNSQIKTWQKENYHHTLXQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYH 145
Query: 135 KAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDAD 194
A + A + A+AD LS + + D + K D +++ + YE+A +
Sbjct: 146 SACKTERSATNQERNANADSSLSPDQVKKXHDRVQKT----KDQVQKCREKYEQAIAEIT 201
Query: 195 K 195
K
Sbjct: 202 K 202
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA + G+++ ++E + W + R +EG++P++Y+ +
Sbjct: 30 ALYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYVARV 81
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQ-GDGWTRVRRQTDSEEGFVPTSYIQTI 644
L T +A+Y + A E + DG+ YI+ + DGW Q G +P +YI+ +
Sbjct: 6 LRTYRAMYDYSAQDEDEVSFRDGD--YIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
ALYP+ + G + +GEE+ + + D G+ WT G P++Y++
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWT---GSIGDRSGIFPSNYVK 60
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA + G+++ ++E + G+ W + R +EG++P++Y+ +
Sbjct: 5 ALYDYEAIHHEDLSFQKGDQMVVLE-ESGE-WWKARSLATRKEGYIPSNYVARV 56
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA + G+++ ++E + G+ W + R +EG++P++Y+ +
Sbjct: 7 ALYDYEAIHHEDLSFQKGDQMVVLE-ESGEWW-KARSLATRKEGYIPSNYVARV 58
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA + G+++ ++E + G+ W + R +EG++P++Y+ +
Sbjct: 13 ALYDYEAIHHEDLSFQKGDQMVVLE-ESGE-WWKARSLATRKEGYIPSNYVARV 64
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA + G+++ ++E + G+ W + R +EG++P++Y+ +
Sbjct: 14 ALYDYEAIHHEDLSFQKGDQMVVLE-ESGE-WWKARSLATRKEGYIPSNYVARV 65
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A A + F AT++ + + L I+ ++ W R + D +EG +P++YI+
Sbjct: 3 AIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRA--ELDGKEGLIPSNYIE 54
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY +EA + G+++ ++E + G+ W + R +EG++P++Y+ +
Sbjct: 14 ALYDYEAIHHEDLSFQKGDQMVVLE-ESGE-WWKARSLATRKEGYIPSNYVARV 65
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 576 DPPEYFDLPPLGTAKA---------------LYPFEATSEGSIPMYDGEELYIIELDQGD 620
+P + PP+G+ A LY F +P GE L IIE +
Sbjct: 100 EPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQ 159
Query: 621 GWTRVRRQTDSEEGFVPTSYIQTIA 645
W+ R D G +P Y++ +
Sbjct: 160 WWS--ARNKDGRVGMIPVPYVEKLV 182
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
ALY ++ S + M G+ L ++ D W + + + +GFVP +Y++ +A
Sbjct: 22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYVKKLA 73
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 576 DPPEYFDLPPLGTAKA---------------LYPFEATSEGSIPMYDGEELYIIELDQGD 620
+P + PP+G+ A LY F +P GE L IIE +
Sbjct: 100 EPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQ 159
Query: 621 GWTRVRRQTDSEEGFVPTSYIQTIA 645
W+ R D G +P Y++ +
Sbjct: 160 WWS--ARNKDGRVGMIPVPYVEKLV 182
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 586 LGTAK----ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+GT K ALY ++ S + M G+ L ++ D W + + + +GFVP +Y+
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYV 57
Query: 642 QTI 644
+ +
Sbjct: 58 KKL 60
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYI 641
A+Y F+AT + + G+E YII L++ D W R R + S EG++P++Y+
Sbjct: 7 AMYDFQATEAHDLRLERGQE-YII-LEKNDLHWWRARDKYGS-EGYIPSNYV 55
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
T K +Y ++A+ + + + E L +IE + W + R + + G+VP Y+Q
Sbjct: 15 TCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV-GQVGYVPEKYLQ 68
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 196 ALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMP 255
A+ + AD L+ +++K + + Q TK +Y L+ ++ Q Y + M
Sbjct: 169 AISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ-YMENME 227
Query: 256 EVFAQLQELDEKRVRNIRNFMVHSANIEKKV-------FPIINQCLDGIIKAADQI 304
+VF Q Q+ +EKR+R R ++ ++K + + I L+ I+AAD +
Sbjct: 228 QVFEQCQQFEEKRLRFFREVLLE---VQKHLDLSNVAGYKAIYHDLEQSIRAADAV 280
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 550 TQLPNISLYQREEP---DIGTSHTSLPESDPPEYFDLPPL------GT---AKALYPFEA 597
T+ N+S Y++ + D ++ P S D P GT +ALY +E
Sbjct: 380 TKAKNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEG 439
Query: 598 TSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+ G+EL +E + GW + R + + G P +Y++ I
Sbjct: 440 QEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYVEAI 485
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 586 LGTAK----ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+GT K ALY ++ S + M G+ L ++ D W + + + +GFVP +Y+
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYV 57
Query: 642 QTI 644
+ +
Sbjct: 58 KKL 60
>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
Nexin-9
Length = 77
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 589 AKALYPFEAT-SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIALD 647
A+ +Y F A + + +GE + + + G GW + E+G VPT Y++ + D
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLE-GKNNKGEQGLVPTDYVEILPND 70
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 585 PLGT---AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
PLG+ A+ALY FEA E + GE + +++ WT + ++ G P +Y+
Sbjct: 1 PLGSVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWT---GRLHNKLGLFPANYV 57
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 11 ALYDYQEKSPAEVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYVKKL 61
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP SY++ +
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPASYVKKL 61
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KTEVNGRQGFVPAAYVKKL 61
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 578 PEYFDLPPLG--TAKALYPFEATSEGSIPMYDGEELYII-ELDQGDGWTRVRRQTDSEEG 634
PE+ +PPL + KALY FE ++G + +G+ + + ++D+ W + G
Sbjct: 5 PEF--MPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDE--NW--YEGXLHGQSG 58
Query: 635 FVPTSYIQTI 644
F P SY+Q +
Sbjct: 59 FFPLSYVQVL 68
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY + + S + G+++ ++E + W + R +EG++P++Y+ +
Sbjct: 8 ALYDYVSWSPDDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYVARV 59
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ + + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 6 ALYDYQEKGDSEVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYVKKL 56
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY + + S + G+++ ++E + G+ W + R +EG++P++Y+ +
Sbjct: 8 ALYDYVSWSPDDLSFQKGDQMVVLE-ESGEWW-KARSLATRKEGYIPSNYVARV 59
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KVEVNGRQGFVPAAYVKKL 56
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 6 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYVKKL 56
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQTI 644
L + LYPF + +E + GE + +IE + D W + + + G VP +Y+ +
Sbjct: 17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKC-KNARGQVGLVPKNYVVVL 75
Query: 645 A 645
+
Sbjct: 76 S 76
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 71
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
L + LYPF + +E + GE + +IE + D + + G VP +Y+ ++
Sbjct: 6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65
>pdb|3Q0K|A Chain A, Crystal Structure Of Human Pacsin 2 F-Bar
pdb|3Q0K|B Chain B, Crystal Structure Of Human Pacsin 2 F-Bar
pdb|3Q0K|C Chain C, Crystal Structure Of Human Pacsin 2 F-Bar
pdb|3Q0K|D Chain D, Crystal Structure Of Human Pacsin 2 F-Bar
Length = 289
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 231 TKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKV---- 286
TK +Y L+ ++ Q Y + M +VF Q Q+ +EKR+R R ++ ++K +
Sbjct: 189 TKEKYEKSLKELDQGTPQ-YMENMEQVFEQCQQFEEKRLRFFREVLL---EVQKHLDLSN 244
Query: 287 ---FPIINQCLDGIIKAADQI 304
+ I L+ I+AAD +
Sbjct: 245 VAGYKAIYHDLEQSIRAADAV 265
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 11 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYVKKL 61
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
KA + F+ T+E + + G+ +Y+ +++G W + G+ P++Y++ I
Sbjct: 14 KARFNFKQTNEDELSVCKGDIIYVTRVEEGGWW---EGTLNGRTGWFPSNYVREI 65
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
L ALY + + + + G+E +I+E + W R R + + +EG++P++Y+
Sbjct: 1 LKKVVALYDYMPMNANDLQLRKGDEYFILE-ESNLPWWRARDK-NGQEGYIPSNYV 54
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQ-GDGWTRVRRQTDSEEGFVPTSYIQTI 644
+A+Y + A E + DG+ I+ + Q DGW + + G +P +Y++ I
Sbjct: 7 RAVYDYSAADEDEVSFQDGDT--IVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYVKKL 61
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP +Y++ +
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAAYVKKL 61
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQTIA 645
+ L+P+ T+E + +GE +++I + G+ GW + + + +EG P ++ I+
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISKETGEAGWW--KGELNGKEGVFPDNFAVQIS 64
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 593 YPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
Y F A S+ + + G+++YI++ + W + + G VP +I+ +
Sbjct: 9 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+ALY FE + + +G+ +YI ++ + W + + G +P++Y+
Sbjct: 11 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWW---KGTSKGRTGLIPSNYV 59
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
+ LYPF + +E + GE + +IE + D + + G VP +Y+ ++
Sbjct: 6 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 61
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W + + + +GFVP Y++ +
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW---KVEVNDRQGFVPAGYVKKL 61
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
ALY + + + + G+E +I+E + W R R + + +EG++P++Y+
Sbjct: 13 ALYDYMPMNANDLQLRKGDEYFILE-ESNLPWWRARDK-NGQEGYIPSNYV 61
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-----RVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W V +T +GFVP +Y++ +
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI--QTIALD 647
+ALY FE + + + +G+ +YI + + W + + G +P++Y+ Q ++D
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDXSDTNWW---KGTSKGRTGLIPSNYVAEQAESID 74
Query: 648 N 648
N
Sbjct: 75 N 75
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-----RVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W V +T +GFVP +Y++ +
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 69
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 277 VHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGG 336
V + ++ ++ FPI+ + +DGI+ +++ E L+ R K P G +P + G
Sbjct: 233 VRTLSLGERTFPILRERVDGILTVSEE-ALLEAERLLFTRTKQVVEPTGALPLAAVLEHG 291
Query: 337 ESTP 340
P
Sbjct: 292 ARLP 295
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+ALY FE + + +G+ +YI ++ + W + + G +P++Y+
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWW---KGTSKGRTGLIPSNYV 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,307,376
Number of Sequences: 62578
Number of extensions: 724326
Number of successful extensions: 1915
Number of sequences better than 100.0: 173
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 1808
Number of HSP's gapped (non-prelim): 185
length of query: 649
length of database: 14,973,337
effective HSP length: 105
effective length of query: 544
effective length of database: 8,402,647
effective search space: 4571039968
effective search space used: 4571039968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)