Query psy10868
Match_columns 649
No_of_seqs 339 out of 1898
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 20:28:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07675 F-BAR_FNBP1L The F-BAR 100.0 9.7E-46 2.1E-50 370.6 34.2 248 1-301 2-251 (252)
2 cd07676 F-BAR_FBP17 The F-BAR 100.0 2.9E-45 6.2E-50 371.9 33.6 248 1-301 2-252 (253)
3 KOG3565|consensus 100.0 1.3E-42 2.9E-47 388.1 37.5 562 1-647 11-639 (640)
4 KOG2856|consensus 100.0 8.1E-42 1.7E-46 343.2 37.8 286 5-339 15-303 (472)
5 cd07673 F-BAR_FCHO2 The F-BAR 100.0 2.4E-41 5.2E-46 347.2 36.8 261 1-332 5-269 (269)
6 cd07653 F-BAR_CIP4-like The F- 100.0 3E-41 6.6E-46 345.9 34.1 248 1-301 2-250 (251)
7 cd07648 F-BAR_FCHO The F-BAR ( 100.0 6.1E-40 1.3E-44 337.8 36.1 257 4-331 5-261 (261)
8 cd07674 F-BAR_FCHO1 The F-BAR 100.0 1.8E-38 3.9E-43 325.8 36.9 257 4-331 5-261 (261)
9 cd07657 F-BAR_Fes_Fer The F-BA 100.0 1.4E-37 3.1E-42 312.7 33.5 230 3-285 4-234 (237)
10 cd07655 F-BAR_PACSIN The F-BAR 100.0 5E-36 1.1E-40 307.0 33.1 236 2-284 1-239 (258)
11 cd07680 F-BAR_PACSIN1 The F-BA 100.0 1.5E-35 3.3E-40 299.2 35.1 251 2-299 1-255 (258)
12 cd07647 F-BAR_PSTPIP The F-BAR 100.0 1.6E-35 3.5E-40 300.5 33.5 234 4-298 5-238 (239)
13 cd07651 F-BAR_PombeCdc15_like 100.0 9.3E-35 2E-39 294.8 33.5 231 4-298 5-235 (236)
14 cd07672 F-BAR_PSTPIP2 The F-BA 100.0 3.3E-34 7.1E-39 288.9 34.2 235 4-298 5-239 (240)
15 cd07671 F-BAR_PSTPIP1 The F-BA 100.0 4.2E-34 9E-39 288.5 33.9 238 3-301 4-241 (242)
16 cd07686 F-BAR_Fer The F-BAR (F 100.0 3E-34 6.5E-39 284.8 32.2 228 2-286 3-232 (234)
17 cd07654 F-BAR_FCHSD The F-BAR 100.0 8.3E-34 1.8E-38 288.7 33.3 250 2-300 3-262 (264)
18 cd07679 F-BAR_PACSIN2 The F-BA 100.0 9.8E-33 2.1E-37 275.2 34.6 253 2-301 1-257 (258)
19 cd07681 F-BAR_PACSIN3 The F-BA 100.0 1.5E-32 3.2E-37 276.4 34.7 253 2-301 1-257 (258)
20 cd07656 F-BAR_srGAP The F-BAR 100.0 2.7E-33 5.8E-38 282.2 29.4 225 1-261 2-232 (241)
21 cd07658 F-BAR_NOSTRIN The F-BA 100.0 2.3E-32 4.9E-37 276.6 32.0 221 4-280 5-238 (239)
22 cd07678 F-BAR_FCHSD1 The F-BAR 100.0 2.5E-31 5.4E-36 267.9 31.7 248 2-300 3-261 (263)
23 cd07649 F-BAR_GAS7 The F-BAR ( 100.0 7.8E-31 1.7E-35 263.0 31.1 221 3-290 4-224 (233)
24 KOG4429|consensus 100.0 2E-30 4.4E-35 254.0 32.7 414 74-646 3-420 (421)
25 cd07652 F-BAR_Rgd1 The F-BAR ( 100.0 2.4E-29 5.2E-34 253.6 29.6 221 4-284 5-230 (234)
26 cd07677 F-BAR_FCHSD2 The F-BAR 100.0 2.2E-27 4.8E-32 236.4 29.4 231 13-299 3-257 (260)
27 cd07685 F-BAR_Fes The F-BAR (F 99.9 7.7E-25 1.7E-29 213.1 32.0 226 3-285 4-234 (237)
28 cd07650 F-BAR_Syp1p_like The F 99.9 8.5E-25 1.8E-29 219.9 30.1 223 4-322 5-227 (228)
29 cd07610 FCH_F-BAR The Extended 99.9 8.6E-25 1.9E-29 214.8 26.5 190 5-298 1-190 (191)
30 cd07684 F-BAR_srGAP3 The F-BAR 99.9 7.1E-24 1.5E-28 207.9 30.6 234 2-261 3-244 (253)
31 cd07682 F-BAR_srGAP2 The F-BAR 99.9 2.5E-23 5.5E-28 204.2 31.5 233 2-261 3-254 (263)
32 cd07683 F-BAR_srGAP1 The F-BAR 99.9 3E-23 6.5E-28 203.9 31.3 233 2-261 3-244 (253)
33 KOG2398|consensus 99.9 1.4E-19 3E-24 202.5 28.4 251 14-334 2-253 (611)
34 PF00611 FCH: Fes/CIP4, and EF 99.6 1.9E-15 4E-20 130.1 9.8 86 1-86 6-91 (91)
35 smart00055 FCH Fes/CIP4 homolo 99.6 2.2E-14 4.8E-19 122.6 10.2 80 2-81 7-86 (87)
36 PF14604 SH3_9: Variant SH3 do 99.4 4.8E-13 1E-17 101.3 4.7 49 591-642 1-49 (49)
37 PF00018 SH3_1: SH3 domain; I 99.2 8E-12 1.7E-16 94.3 4.4 48 590-638 1-48 (48)
38 PF07653 SH3_2: Variant SH3 do 99.2 3.8E-11 8.3E-16 93.3 4.9 54 588-644 1-55 (55)
39 KOG1029|consensus 99.1 8.5E-07 1.8E-11 98.5 39.8 60 585-646 692-752 (1118)
40 smart00326 SH3 Src homology 3 99.0 5.9E-10 1.3E-14 86.6 6.2 55 587-643 3-57 (58)
41 cd00174 SH3 Src homology 3 dom 99.0 7.2E-10 1.6E-14 84.9 5.6 52 589-642 2-53 (54)
42 KOG1118|consensus 99.0 1.3E-08 2.9E-13 102.2 15.9 55 587-644 307-361 (366)
43 KOG0162|consensus 98.9 3.1E-09 6.7E-14 116.8 8.3 54 587-643 1052-1105(1106)
44 KOG2199|consensus 98.9 4.4E-10 9.5E-15 116.3 1.5 58 585-645 214-271 (462)
45 cd00089 HR1 Protein kinase C-r 98.8 2.7E-08 5.9E-13 81.7 8.0 70 391-460 2-71 (72)
46 KOG4226|consensus 98.7 9.3E-09 2E-13 101.5 3.1 60 585-645 190-250 (379)
47 KOG1029|consensus 98.6 1.6E-08 3.4E-13 111.8 3.7 57 583-642 1050-1106(1118)
48 KOG0515|consensus 98.6 1.3E-08 2.9E-13 108.6 2.7 59 585-645 682-742 (752)
49 KOG2070|consensus 98.6 1.9E-08 4.1E-13 106.6 3.0 55 588-645 19-73 (661)
50 KOG4226|consensus 98.5 1.4E-07 2.9E-12 93.4 6.4 54 588-644 109-162 (379)
51 KOG4348|consensus 98.5 5.2E-08 1.1E-12 101.8 3.4 59 585-645 260-319 (627)
52 KOG4225|consensus 98.5 2.2E-07 4.8E-12 97.8 7.1 58 586-646 230-287 (489)
53 KOG3771|consensus 98.5 0.0006 1.3E-08 73.5 32.7 57 584-642 398-454 (460)
54 KOG2996|consensus 98.5 1.1E-07 2.4E-12 102.6 3.9 58 585-644 804-862 (865)
55 KOG3875|consensus 98.3 9.3E-08 2E-12 96.4 -0.6 61 586-646 268-332 (362)
56 KOG4792|consensus 98.3 2.7E-07 5.9E-12 89.1 1.5 55 588-644 126-180 (293)
57 cd07307 BAR The Bin/Amphiphysi 98.2 0.0013 2.9E-08 63.4 26.9 89 6-99 2-90 (194)
58 KOG1264|consensus 98.1 9.7E-07 2.1E-11 98.6 2.6 59 586-646 774-832 (1267)
59 cd07598 BAR_FAM92 The Bin/Amph 98.1 0.0016 3.5E-08 64.8 25.1 198 4-310 11-211 (211)
60 KOG3655|consensus 98.0 1.8E-06 3.8E-11 92.3 2.0 55 588-644 429-483 (484)
61 cd07675 F-BAR_FNBP1L The F-BAR 98.0 0.0029 6.3E-08 64.5 24.0 117 60-202 70-187 (252)
62 KOG4348|consensus 98.0 1.8E-06 3.9E-11 90.5 0.4 59 584-645 98-156 (627)
63 cd07602 BAR_RhoGAP_OPHN1-like 97.9 0.02 4.3E-07 56.6 27.8 95 5-100 10-104 (207)
64 KOG4278|consensus 97.9 8.9E-06 1.9E-10 89.5 3.7 56 587-644 91-146 (1157)
65 PF06730 FAM92: FAM92 protein; 97.9 0.0093 2E-07 58.9 23.9 51 261-311 169-219 (219)
66 cd07635 BAR_GRAF2 The Bin/Amph 97.8 0.045 9.7E-07 54.1 27.7 95 5-100 10-104 (207)
67 KOG4225|consensus 97.8 1.4E-05 3E-10 84.5 3.4 54 589-643 435-488 (489)
68 KOG1843|consensus 97.8 1.1E-05 2.4E-10 84.4 2.5 54 588-643 418-472 (473)
69 KOG3557|consensus 97.8 7.5E-06 1.6E-10 90.1 0.8 58 585-645 499-556 (721)
70 KOG2546|consensus 97.7 1.3E-05 2.9E-10 84.3 2.2 55 587-644 424-478 (483)
71 PF09325 Vps5: Vps5 C terminal 97.7 0.054 1.2E-06 54.8 28.5 92 6-105 33-124 (236)
72 cd07636 BAR_GRAF The Bin/Amphi 97.7 0.061 1.3E-06 53.2 27.5 95 5-100 10-104 (207)
73 cd07603 BAR_ACAPs The Bin/Amph 97.7 0.066 1.4E-06 53.0 27.2 89 5-100 10-98 (200)
74 cd07639 BAR_ACAP1 The Bin/Amph 97.7 0.061 1.3E-06 53.0 26.5 89 5-100 10-98 (200)
75 cd07634 BAR_GAP10-like The Bin 97.7 0.066 1.4E-06 52.9 26.6 93 7-100 12-104 (207)
76 cd07606 BAR_SFC_plant The Bin/ 97.6 0.09 1.9E-06 52.0 27.1 89 5-100 9-100 (202)
77 KOG1702|consensus 97.6 4.6E-05 1E-09 72.7 3.3 57 587-644 208-264 (264)
78 cd07596 BAR_SNX The Bin/Amphip 97.6 0.1 2.2E-06 51.8 29.4 192 7-287 14-205 (218)
79 cd07680 F-BAR_PACSIN1 The F-BA 97.6 0.036 7.7E-07 56.9 24.0 85 103-205 112-196 (258)
80 cd07657 F-BAR_Fes_Fer The F-BA 97.5 0.026 5.7E-07 57.4 22.5 114 60-199 69-183 (237)
81 KOG0197|consensus 97.5 4.1E-05 8.9E-10 83.6 2.2 58 585-643 10-68 (468)
82 KOG2528|consensus 97.5 4.1E-05 9E-10 81.2 2.0 58 587-645 3-60 (490)
83 cd07604 BAR_ASAPs The Bin/Amph 97.5 0.15 3.3E-06 51.0 26.7 92 4-100 9-100 (215)
84 cd07641 BAR_ASAP1 The Bin/Amph 97.4 0.14 3.1E-06 50.3 25.7 93 3-100 8-100 (215)
85 cd07601 BAR_APPL The Bin/Amphi 97.4 0.17 3.6E-06 50.6 29.3 92 5-100 10-102 (215)
86 cd07633 BAR_OPHN1 The Bin/Amph 97.3 0.19 4.2E-06 49.2 26.7 95 6-101 11-105 (207)
87 PF03114 BAR: BAR domain; Int 97.3 0.22 4.8E-06 49.4 25.8 41 61-101 90-130 (229)
88 cd07676 F-BAR_FBP17 The F-BAR 97.2 0.14 3E-06 52.6 24.2 119 60-204 68-190 (253)
89 KOG3601|consensus 97.2 0.0002 4.3E-09 69.3 2.9 58 584-644 161-218 (222)
90 cd07638 BAR_ACAP2 The Bin/Amph 97.2 0.27 5.8E-06 48.5 27.2 89 5-100 10-98 (200)
91 cd07627 BAR_Vps5p The Bin/Amph 97.1 0.37 8E-06 48.3 29.6 88 7-102 14-101 (216)
92 cd07588 BAR_Amphiphysin The Bi 97.1 0.36 7.7E-06 48.2 24.9 69 220-303 140-208 (211)
93 PF02185 HR1: Hr1 repeat; Int 97.1 0.0021 4.5E-08 52.5 7.0 63 398-462 1-64 (70)
94 cd07653 F-BAR_CIP4-like The F- 97.0 0.36 7.7E-06 49.5 24.8 76 68-151 77-153 (251)
95 cd07625 BAR_Vps17p The Bin/Amp 96.9 0.55 1.2E-05 47.4 28.7 77 20-104 41-117 (230)
96 KOG3601|consensus 96.9 0.0002 4.2E-09 69.4 -0.9 54 588-643 2-55 (222)
97 KOG3632|consensus 96.7 0.0013 2.8E-08 75.8 4.4 62 585-648 1137-1206(1335)
98 cd07637 BAR_ACAP3 The Bin/Amph 96.7 0.77 1.7E-05 45.5 27.8 89 5-100 10-98 (200)
99 cd07623 BAR_SNX1_2 The Bin/Amp 96.7 0.89 1.9E-05 45.9 28.6 90 5-102 20-109 (224)
100 cd07658 F-BAR_NOSTRIN The F-BA 96.6 0.87 1.9E-05 46.4 23.6 63 233-296 174-236 (239)
101 KOG0996|consensus 96.6 2.5 5.4E-05 51.0 29.3 137 7-154 369-509 (1293)
102 cd07686 F-BAR_Fer The F-BAR (F 96.6 0.57 1.2E-05 47.4 21.4 76 69-151 78-154 (234)
103 KOG4575|consensus 96.5 0.0036 7.7E-08 69.2 5.4 58 586-645 8-66 (874)
104 cd07665 BAR_SNX1 The Bin/Amphi 96.5 1.2 2.6E-05 45.2 28.4 204 5-257 30-233 (234)
105 cd07656 F-BAR_srGAP The F-BAR 96.4 0.34 7.5E-06 49.4 19.3 29 62-90 98-126 (241)
106 KOG3725|consensus 96.4 0.0014 3.1E-08 64.8 1.9 57 586-644 317-374 (375)
107 cd07590 BAR_Bin3 The Bin/Amphi 96.4 1.3 2.8E-05 44.7 26.1 69 219-302 145-213 (225)
108 cd07678 F-BAR_FCHSD1 The F-BAR 96.4 1.5 3.2E-05 45.2 25.6 70 170-239 123-192 (263)
109 smart00721 BAR BAR domain. 96.3 1.4 3E-05 44.4 26.2 37 61-98 93-129 (239)
110 cd07685 F-BAR_Fes The F-BAR (F 96.3 0.87 1.9E-05 45.6 20.5 78 66-150 79-157 (237)
111 cd07664 BAR_SNX2 The Bin/Amphi 96.3 1.5 3.2E-05 44.5 29.0 56 230-286 163-218 (234)
112 PF08397 IMD: IRSp53/MIM homol 96.3 1.4 3.1E-05 44.2 25.6 83 14-100 13-95 (219)
113 KOG3523|consensus 96.3 0.00078 1.7E-08 74.3 -1.2 58 588-646 610-667 (695)
114 cd07647 F-BAR_PSTPIP The F-BAR 96.1 1.1 2.3E-05 45.8 21.1 30 122-151 118-147 (239)
115 cd07631 BAR_APPL1 The Bin/Amph 95.7 2.5 5.4E-05 41.9 27.9 91 7-100 12-102 (215)
116 PF08239 SH3_3: Bacterial SH3 95.5 0.013 2.9E-07 44.9 3.2 37 605-642 19-55 (55)
117 PRK04863 mukB cell division pr 95.4 12 0.00025 48.0 39.3 46 391-438 513-558 (1486)
118 cd07681 F-BAR_PACSIN3 The F-BA 95.4 1 2.2E-05 46.2 17.3 39 105-143 114-152 (258)
119 PF14603 hSH3: Helically-exten 95.3 0.019 4.1E-07 48.1 3.5 42 599-642 29-70 (89)
120 KOG0609|consensus 95.3 0.0097 2.1E-07 65.4 2.4 55 587-642 215-279 (542)
121 cd07597 BAR_SNX8 The Bin/Amphi 95.3 4.2 9E-05 41.7 26.7 98 4-101 22-129 (246)
122 KOG3632|consensus 95.2 0.044 9.6E-07 63.7 7.5 61 585-646 446-512 (1335)
123 KOG1451|consensus 95.2 7 0.00015 43.9 27.5 56 587-644 757-812 (812)
124 cd07595 BAR_RhoGAP_Rich-like T 95.1 4.5 9.8E-05 41.4 24.0 95 1-99 12-117 (244)
125 KOG2856|consensus 95.1 1.1 2.3E-05 47.4 16.3 57 587-644 415-471 (472)
126 cd07612 BAR_Bin2 The Bin/Amphi 95.1 3.3 7.2E-05 41.2 19.2 72 218-304 138-209 (211)
127 cd07671 F-BAR_PSTPIP1 The F-BA 95.1 4.6 0.0001 41.2 21.5 60 123-202 119-178 (242)
128 cd07616 BAR_Endophilin_B1 The 95.0 3.8 8.2E-05 41.3 19.8 171 2-192 15-220 (229)
129 cd07662 BAR_SNX6 The Bin/Amphi 95.0 4.3 9.2E-05 40.5 26.1 34 255-288 171-204 (218)
130 KOG1451|consensus 95.0 0.052 1.1E-06 60.0 6.8 94 7-101 30-123 (812)
131 cd07632 BAR_APPL2 The Bin/Amph 94.9 4.3 9.4E-05 40.1 27.9 41 60-100 62-102 (215)
132 cd07611 BAR_Amphiphysin_I_II T 94.9 4.6 0.0001 40.2 23.6 71 219-304 139-209 (211)
133 PF06456 Arfaptin: Arfaptin-li 94.9 5 0.00011 40.6 26.7 41 247-287 182-222 (229)
134 cd07663 BAR_SNX5 The Bin/Amphi 94.6 5.4 0.00012 39.9 27.9 40 249-288 165-204 (218)
135 cd07679 F-BAR_PACSIN2 The F-BA 94.6 6.3 0.00014 40.4 23.4 45 105-149 114-158 (258)
136 PRK10884 SH3 domain-containing 94.6 0.027 5.9E-07 55.8 3.2 40 605-645 50-89 (206)
137 PF14389 Lzipper-MIP1: Leucine 94.6 0.26 5.6E-06 42.1 8.7 77 389-466 6-82 (88)
138 KOG2222|consensus 94.4 0.0096 2.1E-07 63.9 -0.4 56 587-645 549-604 (848)
139 smart00742 Hr1 Rho effector or 94.3 0.2 4.3E-06 39.1 6.8 55 399-455 2-56 (57)
140 cd00011 BAR_Arfaptin_like The 94.3 6.2 0.00013 39.1 24.3 42 247-288 150-191 (203)
141 cd07674 F-BAR_FCHO1 The F-BAR 94.1 8.1 0.00018 39.9 24.1 78 62-144 66-143 (261)
142 cd07593 BAR_MUG137_fungi The B 94.1 7.1 0.00015 39.1 22.1 89 2-100 5-112 (215)
143 KOG3775|consensus 93.8 0.07 1.5E-06 56.0 4.4 58 588-646 264-321 (482)
144 KOG0521|consensus 93.8 16 0.00035 43.6 24.4 88 5-99 29-116 (785)
145 cd07618 BAR_Rich1 The Bin/Amph 93.6 9.8 0.00021 38.9 25.3 96 2-99 13-117 (246)
146 KOG4773|consensus 93.2 0.013 2.9E-07 60.8 -2.0 55 587-644 176-230 (386)
147 cd07621 BAR_SNX5_6 The Bin/Amp 93.1 10 0.00023 38.0 27.2 40 250-289 167-206 (219)
148 cd07620 BAR_SH3BP1 The Bin/Amp 93.0 12 0.00025 38.3 23.8 94 1-99 12-117 (257)
149 cd07642 BAR_ASAP2 The Bin/Amph 93.0 10 0.00023 37.7 25.8 78 19-101 24-102 (215)
150 smart00287 SH3b Bacterial SH3 92.9 0.13 2.8E-06 40.4 3.8 36 605-642 27-62 (63)
151 cd07630 BAR_SNX_like The Bin/A 92.9 11 0.00023 37.4 27.2 89 7-101 14-102 (198)
152 KOG4792|consensus 92.3 0.69 1.5E-05 45.7 8.4 57 588-647 229-287 (293)
153 cd07614 BAR_Endophilin_A2 The 92.1 14 0.00031 37.1 23.1 97 2-98 5-123 (223)
154 KOG0040|consensus 92.1 0.0061 1.3E-07 73.0 -6.8 54 588-644 970-1023(2399)
155 cd07624 BAR_SNX7_30 The Bin/Am 92.0 14 0.00029 36.6 26.3 92 6-100 16-107 (200)
156 cd07617 BAR_Endophilin_B2 The 91.9 15 0.00033 36.8 22.7 173 2-192 15-211 (220)
157 cd07592 BAR_Endophilin_A The B 91.9 15 0.00033 36.9 25.1 97 2-98 5-123 (223)
158 PRK11637 AmiB activator; Provi 91.4 27 0.00059 38.8 26.5 10 602-611 380-389 (428)
159 cd07307 BAR The Bin/Amphiphysi 91.3 13 0.00029 35.2 21.0 30 257-286 151-180 (194)
160 PF12128 DUF3584: Protein of u 91.3 51 0.0011 41.7 45.8 68 93-160 324-395 (1201)
161 cd07660 BAR_Arfaptin The Bin/A 91.2 17 0.00036 36.0 25.3 53 247-302 147-199 (201)
162 cd07640 BAR_ASAP3 The Bin/Amph 91.0 17 0.00037 35.7 24.3 68 28-100 33-100 (213)
163 PF06160 EzrA: Septation ring 90.9 36 0.00078 39.3 31.9 75 194-269 104-178 (560)
164 cd07655 F-BAR_PACSIN The F-BAR 90.7 22 0.00049 36.6 27.3 125 170-306 112-243 (258)
165 KOG0161|consensus 89.6 82 0.0018 41.4 45.9 69 390-463 1575-1643(1930)
166 PRK04863 mukB cell division pr 89.5 76 0.0016 41.0 41.1 73 391-465 579-658 (1486)
167 cd07677 F-BAR_FCHSD2 The F-BAR 89.5 28 0.0006 35.8 29.6 232 6-277 7-253 (260)
168 cd07619 BAR_Rich2 The Bin/Amph 88.6 31 0.00068 35.3 23.7 96 2-99 13-117 (248)
169 cd07648 F-BAR_FCHO The F-BAR ( 88.3 33 0.00072 35.2 26.1 89 213-306 124-218 (261)
170 PF10368 YkyA: Putative cell-w 88.2 29 0.00063 34.5 21.1 67 186-252 134-200 (204)
171 cd07591 BAR_Rvs161p The Bin/Am 87.8 33 0.00071 34.6 26.5 69 220-306 145-213 (224)
172 cd07654 F-BAR_FCHSD The F-BAR 87.8 37 0.0008 35.2 25.8 63 215-278 194-258 (264)
173 cd07613 BAR_Endophilin_A1 The 87.3 35 0.00076 34.4 24.8 96 2-98 5-123 (223)
174 cd07599 BAR_Rvs167p The Bin/Am 87.2 34 0.00074 34.1 27.6 26 84-109 92-117 (216)
175 cd07591 BAR_Rvs161p The Bin/Am 86.9 37 0.0008 34.2 22.9 61 192-252 124-184 (224)
176 PF03114 BAR: BAR domain; Int 86.9 33 0.00071 33.6 21.6 32 174-205 128-159 (229)
177 cd07594 BAR_Endophilin_B The B 86.8 38 0.00082 34.3 22.7 97 2-99 15-129 (229)
178 PRK04778 septation ring format 86.5 70 0.0015 37.0 41.2 75 8-82 109-184 (569)
179 cd07600 BAR_Gvp36 The Bin/Amph 86.3 42 0.00091 34.3 17.4 67 59-136 103-173 (242)
180 KOG0199|consensus 85.5 0.94 2E-05 52.0 4.4 53 591-643 379-431 (1039)
181 PF12128 DUF3584: Protein of u 85.4 1.2E+02 0.0025 38.6 42.6 13 38-50 161-173 (1201)
182 KOG0994|consensus 85.3 1E+02 0.0022 37.9 33.5 22 170-191 1619-1640(1758)
183 cd07665 BAR_SNX1 The Bin/Amphi 85.0 47 0.001 33.7 27.0 59 227-286 160-218 (234)
184 KOG0994|consensus 85.0 1.1E+02 0.0023 37.8 35.6 25 390-414 1723-1747(1758)
185 KOG0250|consensus 84.4 1.1E+02 0.0024 37.5 45.8 62 93-154 303-367 (1074)
186 KOG0933|consensus 83.8 1.1E+02 0.0024 37.1 40.9 31 436-466 992-1022(1174)
187 cd07672 F-BAR_PSTPIP2 The F-BA 83.6 55 0.0012 33.4 20.3 25 124-148 121-145 (240)
188 PF06347 SH3_4: Bacterial SH3 83.3 1.4 3.1E-05 33.7 3.4 34 604-641 20-53 (55)
189 COG3103 SH3 domain protein [Si 83.1 1.2 2.7E-05 44.0 3.7 40 604-644 49-88 (205)
190 cd07643 I-BAR_IMD_MIM Inverse 82.6 57 0.0012 32.8 24.4 89 5-100 20-108 (231)
191 cd07615 BAR_Endophilin_A3 The 81.8 61 0.0013 32.6 25.0 97 2-98 5-123 (223)
192 KOG2996|consensus 81.8 0.77 1.7E-05 51.1 1.8 42 602-643 626-667 (865)
193 cd07651 F-BAR_PombeCdc15_like 81.6 63 0.0014 32.7 26.5 122 176-309 106-228 (236)
194 cd07628 BAR_Atg24p The Bin/Amp 81.6 55 0.0012 31.9 23.9 92 6-99 6-97 (185)
195 KOG2129|consensus 80.9 90 0.002 34.0 23.9 34 212-245 253-286 (552)
196 KOG2398|consensus 80.6 1.2E+02 0.0026 35.3 19.2 42 584-627 549-591 (611)
197 PF08397 IMD: IRSp53/MIM homol 80.0 68 0.0015 32.1 20.8 49 239-288 147-195 (219)
198 KOG0018|consensus 77.6 1.8E+02 0.0039 35.6 31.1 38 383-423 924-961 (1141)
199 cd07595 BAR_RhoGAP_Rich-like T 77.2 91 0.002 31.9 20.8 38 264-301 191-228 (244)
200 PF10481 CENP-F_N: Cenp-F N-te 77.1 91 0.002 32.1 14.4 21 398-418 162-182 (307)
201 cd07609 BAR_SIP3_fungi The Bin 76.9 85 0.0018 31.4 17.5 94 2-101 6-101 (214)
202 KOG4674|consensus 76.8 2.5E+02 0.0054 36.8 33.5 76 391-466 1181-1271(1822)
203 PRK13914 invasion associated s 76.1 2.5 5.5E-05 47.0 3.7 38 604-643 104-141 (481)
204 cd07626 BAR_SNX9_like The Bin/ 75.8 87 0.0019 31.0 25.8 80 4-85 7-91 (199)
205 cd07666 BAR_SNX7 The Bin/Amphi 75.3 1E+02 0.0022 31.5 25.7 30 259-288 202-231 (243)
206 cd07605 I-BAR_IMD Inverse (I)- 75.0 98 0.0021 31.2 27.6 82 9-98 22-103 (223)
207 cd07659 BAR_PICK1 The Bin/Amph 74.5 95 0.0021 30.8 22.0 59 228-287 142-200 (215)
208 PF15456 Uds1: Up-regulated Du 74.3 35 0.00076 31.1 9.9 76 392-467 30-110 (124)
209 cd07612 BAR_Bin2 The Bin/Amphi 73.0 1.1E+02 0.0023 30.7 24.5 96 8-116 20-118 (211)
210 KOG0980|consensus 72.7 2.2E+02 0.0048 34.2 30.9 115 118-243 418-532 (980)
211 COG1579 Zn-ribbon protein, pos 72.5 1.2E+02 0.0025 31.0 24.4 59 93-151 21-79 (239)
212 cd07661 BAR_ICA69 The Bin/Amph 72.0 1.1E+02 0.0023 30.3 24.2 54 247-300 150-203 (204)
213 cd07639 BAR_ACAP1 The Bin/Amph 71.8 1.1E+02 0.0024 30.3 18.5 64 179-245 103-166 (200)
214 TIGR03185 DNA_S_dndD DNA sulfu 71.3 2.2E+02 0.0047 33.6 24.9 268 109-466 181-456 (650)
215 KOG3565|consensus 70.7 2.2E+02 0.0048 33.4 21.1 90 62-160 88-177 (640)
216 PF10498 IFT57: Intra-flagella 68.8 1.8E+02 0.0039 31.6 15.5 130 170-306 216-349 (359)
217 PF10455 BAR_2: Bin/amphiphysi 68.4 1.6E+02 0.0035 30.9 19.5 70 59-135 148-217 (289)
218 PRK04778 septation ring format 68.4 2.3E+02 0.005 32.7 32.6 73 31-104 222-301 (569)
219 KOG2273|consensus 68.2 2.2E+02 0.0047 32.3 26.9 32 257-288 454-485 (503)
220 PF09325 Vps5: Vps5 C terminal 68.1 1.3E+02 0.0029 29.9 25.2 40 248-287 184-223 (236)
221 cd07673 F-BAR_FCHO2 The F-BAR 67.7 1.6E+02 0.0034 30.6 25.6 49 258-306 177-225 (269)
222 PF07106 TBPIP: Tat binding pr 67.5 41 0.00088 32.2 9.5 75 381-466 63-137 (169)
223 KOG3812|consensus 67.4 2.8 6.1E-05 43.8 1.5 50 589-639 61-118 (475)
224 KOG0977|consensus 66.6 2.4E+02 0.0052 32.3 34.4 22 17-38 45-66 (546)
225 cd07622 BAR_SNX4 The Bin/Amphi 63.7 1.6E+02 0.0034 29.2 25.4 34 257-290 156-189 (201)
226 PF10458 Val_tRNA-synt_C: Valy 62.9 41 0.00088 26.9 7.1 58 400-464 6-65 (66)
227 KOG2273|consensus 62.4 2.7E+02 0.0059 31.5 28.6 14 68-81 279-292 (503)
228 PRK05658 RNA polymerase sigma 62.0 3.1E+02 0.0068 32.0 18.2 46 262-307 383-428 (619)
229 TIGR00606 rad50 rad50. This fa 59.7 4.9E+02 0.011 33.5 46.2 24 434-457 1050-1073(1311)
230 PF01093 Clusterin: Clusterin; 59.3 1.6E+02 0.0035 32.7 13.2 66 215-281 33-98 (436)
231 cd07593 BAR_MUG137_fungi The B 58.8 2E+02 0.0044 28.8 20.0 47 224-282 147-193 (215)
232 smart00721 BAR BAR domain. 57.9 2E+02 0.0044 28.5 24.1 96 171-287 128-223 (239)
233 cd07667 BAR_SNX30 The Bin/Amph 57.7 2.3E+02 0.0049 29.0 24.6 26 261-286 201-226 (240)
234 PF03962 Mnd1: Mnd1 family; I 57.7 61 0.0013 31.8 8.7 70 390-459 61-131 (188)
235 PF02403 Seryl_tRNA_N: Seryl-t 57.6 1.3E+02 0.0028 26.2 11.0 76 392-469 30-105 (108)
236 PRK11546 zraP zinc resistance 57.1 84 0.0018 29.4 9.0 70 383-464 40-119 (143)
237 TIGR02284 conserved hypothetic 56.9 1.6E+02 0.0036 27.1 11.1 51 22-72 30-81 (139)
238 PF11471 Sugarporin_N: Maltopo 54.9 25 0.00053 27.8 4.4 30 386-415 27-56 (60)
239 KOG0996|consensus 54.8 5.2E+02 0.011 32.3 37.7 26 604-631 1174-1199(1293)
240 COG1196 Smc Chromosome segrega 54.7 5.5E+02 0.012 32.6 35.3 15 26-40 672-686 (1163)
241 PF00435 Spectrin: Spectrin re 54.6 1.2E+02 0.0027 25.0 9.5 70 393-463 36-105 (105)
242 PHA02562 46 endonuclease subun 54.4 3.8E+02 0.0082 30.6 29.2 21 253-274 286-306 (562)
243 cd07618 BAR_Rich1 The Bin/Amph 52.8 2.7E+02 0.006 28.5 20.7 31 173-203 117-147 (246)
244 PF00261 Tropomyosin: Tropomyo 52.7 2.6E+02 0.0057 28.2 23.6 56 95-150 21-76 (237)
245 PF05276 SH3BP5: SH3 domain-bi 52.2 2.8E+02 0.006 28.3 25.4 29 221-253 151-179 (239)
246 PF01093 Clusterin: Clusterin; 52.1 2.2E+02 0.0047 31.7 12.7 76 107-192 27-103 (436)
247 PF10550 Toxin_36: Conantokin- 50.9 18 0.00039 19.8 2.1 13 34-46 2-14 (15)
248 PF08826 DMPK_coil: DMPK coile 50.8 1.2E+02 0.0027 23.9 8.3 54 403-465 6-59 (61)
249 PLN02320 seryl-tRNA synthetase 50.1 1.7E+02 0.0037 33.2 11.7 78 393-473 95-172 (502)
250 smart00030 CLb CLUSTERIN Beta 48.8 2.8E+02 0.006 27.4 14.3 73 109-191 35-108 (206)
251 PF10267 Tmemb_cc2: Predicted 47.9 2.9E+02 0.0063 30.4 12.7 91 227-319 220-312 (395)
252 PRK13182 racA polar chromosome 47.7 1.6E+02 0.0034 28.6 9.6 66 388-467 82-147 (175)
253 TIGR02169 SMC_prok_A chromosom 47.4 6.7E+02 0.014 31.4 44.5 29 437-465 468-496 (1164)
254 KOG3705|consensus 47.4 19 0.00042 38.8 3.6 54 588-642 511-564 (580)
255 KOG1118|consensus 46.9 3.8E+02 0.0081 28.4 20.5 39 59-97 103-141 (366)
256 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.2 2.3E+02 0.0051 25.8 17.2 18 172-189 33-50 (132)
257 PLN02678 seryl-tRNA synthetase 45.0 2.2E+02 0.0047 32.0 11.5 75 390-473 39-113 (448)
258 TIGR00414 serS seryl-tRNA synt 44.0 2.5E+02 0.0055 31.1 12.0 75 390-473 36-111 (418)
259 PF14282 FlxA: FlxA-like prote 43.9 1.4E+02 0.003 26.3 8.0 62 390-466 18-79 (106)
260 TIGR00634 recN DNA repair prot 43.6 5.7E+02 0.012 29.5 22.1 211 171-464 148-372 (563)
261 TIGR00606 rad50 rad50. This fa 43.5 8.4E+02 0.018 31.4 47.7 34 434-467 1097-1130(1311)
262 cd07589 BAR_DNMBP The Bin/Amph 43.2 3.3E+02 0.0072 26.7 24.1 48 62-109 61-109 (195)
263 KOG0972|consensus 42.6 4.2E+02 0.0091 27.7 16.1 27 125-151 274-300 (384)
264 KOG4403|consensus 42.5 5.1E+02 0.011 28.6 16.1 18 211-228 308-325 (575)
265 TIGR02231 conserved hypothetic 42.0 1.5E+02 0.0032 33.8 10.1 77 390-466 70-173 (525)
266 cd07649 F-BAR_GAS7 The F-BAR ( 41.9 3.9E+02 0.0084 27.1 24.4 42 266-307 182-223 (233)
267 KOG1962|consensus 41.9 3.7E+02 0.0079 27.0 11.3 35 212-246 172-206 (216)
268 cd07607 BAR_SH3P_plant The Bin 41.3 3.5E+02 0.0076 26.4 23.7 93 5-99 2-97 (209)
269 KOG3230|consensus 40.8 2.8E+02 0.006 27.3 9.8 50 387-436 8-58 (224)
270 cd07594 BAR_Endophilin_B The B 40.4 4.1E+02 0.0088 26.9 17.8 26 258-283 190-215 (229)
271 PF00038 Filament: Intermediat 40.0 4.6E+02 0.0099 27.4 35.9 33 18-51 8-40 (312)
272 PRK03918 chromosome segregatio 39.8 7.7E+02 0.017 29.9 41.1 25 394-418 401-425 (880)
273 smart00743 Agenet Tudor-like d 38.6 33 0.00072 26.6 2.9 24 604-628 2-25 (61)
274 PF05149 Flagellar_rod: Parafl 38.6 4.9E+02 0.011 27.3 29.0 57 94-150 4-60 (289)
275 KOG2008|consensus 38.3 5.1E+02 0.011 27.4 21.5 166 84-314 20-188 (426)
276 PF02388 FemAB: FemAB family; 37.8 1.4E+02 0.003 32.9 8.7 65 386-466 237-301 (406)
277 PRK11637 AmiB activator; Provi 37.2 6.1E+02 0.013 28.0 29.5 12 604-615 388-399 (428)
278 KOG0933|consensus 36.6 9.1E+02 0.02 29.9 26.1 54 212-266 794-850 (1174)
279 PF04065 Not3: Not1 N-terminal 36.6 4.7E+02 0.01 26.6 17.3 82 236-319 128-215 (233)
280 KOG4403|consensus 36.2 6.3E+02 0.014 27.9 16.8 11 632-642 552-562 (575)
281 cd07652 F-BAR_Rgd1 The F-BAR ( 35.9 4.7E+02 0.01 26.4 22.7 22 213-234 126-147 (234)
282 PF08647 BRE1: BRE1 E3 ubiquit 35.2 2.9E+02 0.0064 23.8 13.9 58 174-242 35-92 (96)
283 cd00890 Prefoldin Prefoldin is 35.0 1.2E+02 0.0027 27.1 6.5 32 391-422 13-44 (129)
284 PF04420 CHD5: CHD5-like prote 34.7 80 0.0017 30.1 5.4 57 394-464 36-92 (161)
285 PRK13545 tagH teichoic acids e 34.5 38 0.00083 38.7 3.6 40 608-648 375-418 (549)
286 PF09537 DUF2383: Domain of un 34.2 75 0.0016 27.8 4.8 51 21-71 30-81 (111)
287 PF09789 DUF2353: Uncharacteri 34.1 6.1E+02 0.013 27.1 16.8 88 182-270 77-165 (319)
288 PRK05431 seryl-tRNA synthetase 33.8 3.7E+02 0.008 29.9 11.2 75 390-473 34-108 (425)
289 KOG1899|consensus 33.8 8.2E+02 0.018 28.5 19.0 44 267-314 274-317 (861)
290 KOG0804|consensus 32.7 7.4E+02 0.016 27.6 16.7 30 92-121 364-393 (493)
291 PRK13729 conjugal transfer pil 32.6 2.2E+02 0.0048 31.9 9.0 58 390-466 68-125 (475)
292 COG5509 Uncharacterized small 32.5 85 0.0018 24.6 4.0 31 390-420 31-61 (65)
293 PF00261 Tropomyosin: Tropomyo 32.3 5.4E+02 0.012 26.0 27.0 16 248-263 172-187 (237)
294 PF04822 Takusan: Takusan; In 31.9 3.2E+02 0.0069 23.2 9.8 69 393-464 13-82 (84)
295 PF10146 zf-C4H2: Zinc finger- 31.4 5.7E+02 0.012 25.9 14.1 25 224-248 79-103 (230)
296 cd07629 BAR_Atg20p The Bin/Amp 31.3 5E+02 0.011 25.3 24.1 95 4-99 4-99 (187)
297 PF02520 DUF148: Domain of unk 31.3 3.6E+02 0.0079 23.7 12.9 51 267-317 58-108 (113)
298 PRK10884 SH3 domain-containing 30.7 3.9E+02 0.0086 26.5 9.7 27 387-413 89-115 (206)
299 cd07666 BAR_SNX7 The Bin/Amphi 30.6 6E+02 0.013 26.0 25.0 61 215-275 180-240 (243)
300 PF05600 DUF773: Protein of un 30.5 7.4E+02 0.016 28.2 13.1 26 22-47 15-40 (507)
301 PF14073 Cep57_CLD: Centrosome 30.4 4.9E+02 0.011 25.3 9.8 78 389-466 69-148 (178)
302 PF10458 Val_tRNA-synt_C: Valy 30.3 2.2E+02 0.0048 22.6 6.5 62 390-457 3-65 (66)
303 KOG4643|consensus 30.3 1.1E+03 0.025 29.1 31.5 233 59-310 394-634 (1195)
304 KOG0250|consensus 30.0 1.2E+03 0.025 29.1 36.3 52 176-233 364-415 (1074)
305 COG1579 Zn-ribbon protein, pos 29.9 6.2E+02 0.013 25.9 23.2 37 117-153 31-67 (239)
306 COG5283 Phage-related tail pro 29.6 1.2E+03 0.027 29.3 25.1 20 225-244 161-180 (1213)
307 KOG0243|consensus 29.6 1.2E+03 0.026 29.1 24.4 218 68-310 406-629 (1041)
308 PF11559 ADIP: Afadin- and alp 29.6 4.6E+02 0.01 24.3 16.2 16 68-83 43-58 (151)
309 KOG0161|consensus 29.5 1.5E+03 0.033 30.4 48.4 66 391-461 1294-1359(1930)
310 PF10359 Fmp27_WPPW: RNA pol I 29.5 2E+02 0.0043 32.5 8.3 70 388-467 160-229 (475)
311 PF00804 Syntaxin: Syntaxin; 29.0 3.4E+02 0.0074 22.6 9.0 58 397-456 6-63 (103)
312 KOG0963|consensus 29.0 9.7E+02 0.021 27.9 28.3 36 170-205 235-270 (629)
313 PF04111 APG6: Autophagy prote 28.8 6.9E+02 0.015 26.5 11.8 127 82-219 2-134 (314)
314 PF07888 CALCOCO1: Calcium bin 28.8 9.4E+02 0.02 27.7 35.6 297 83-464 138-436 (546)
315 COG4026 Uncharacterized protei 28.7 3E+02 0.0066 27.5 8.2 73 390-467 134-206 (290)
316 TIGR01834 PHA_synth_III_E poly 28.7 7.5E+02 0.016 26.4 17.3 33 386-418 284-316 (320)
317 PF10152 DUF2360: Predicted co 28.6 70 0.0015 30.0 3.8 33 434-466 17-49 (148)
318 cd07642 BAR_ASAP2 The Bin/Amph 28.4 6.2E+02 0.013 25.4 21.1 80 27-112 7-86 (215)
319 TIGR01069 mutS2 MutS2 family p 28.2 1.1E+03 0.024 28.4 17.1 14 453-466 706-719 (771)
320 KOG4384|consensus 28.1 1E+02 0.0023 32.9 5.3 62 584-648 134-197 (361)
321 PF02321 OEP: Outer membrane e 28.1 4.6E+02 0.0099 23.8 15.4 34 210-243 151-184 (188)
322 TIGR01000 bacteriocin_acc bact 28.1 3.4E+02 0.0074 30.3 9.9 43 390-432 164-206 (457)
323 KOG0804|consensus 28.0 8.8E+02 0.019 27.1 17.0 6 271-276 443-448 (493)
324 PRK00295 hypothetical protein; 27.2 3.3E+02 0.0072 21.9 8.8 27 440-466 28-54 (68)
325 COG1196 Smc Chromosome segrega 27.2 1.4E+03 0.03 29.1 41.5 24 442-465 471-494 (1163)
326 TIGR02169 SMC_prok_A chromosom 27.1 1.3E+03 0.028 28.8 48.7 17 440-456 478-494 (1164)
327 PF12913 SH3_6: SH3 domain of 26.8 81 0.0018 24.3 3.1 32 605-638 23-54 (54)
328 PRK09465 tolC outer membrane c 26.8 8.6E+02 0.019 26.5 14.8 30 213-242 388-417 (446)
329 cd07644 I-BAR_IMD_BAIAP2L2 Inv 26.7 6.5E+02 0.014 25.1 16.6 65 28-96 37-101 (215)
330 PF06456 Arfaptin: Arfaptin-li 26.7 6.8E+02 0.015 25.3 14.8 46 228-273 103-148 (229)
331 KOG0964|consensus 26.6 1.3E+03 0.028 28.5 30.6 284 96-465 177-487 (1200)
332 cd07592 BAR_Endophilin_A The B 26.5 6.8E+02 0.015 25.2 20.9 37 261-297 180-216 (223)
333 smart00030 CLb CLUSTERIN Beta 26.3 6.4E+02 0.014 24.9 13.8 56 224-281 48-104 (206)
334 PRK10636 putative ABC transpor 26.2 3.4E+02 0.0073 31.9 9.8 70 393-466 558-633 (638)
335 PF06810 Phage_GP20: Phage min 26.2 4.1E+02 0.0089 25.1 8.6 30 213-242 52-81 (155)
336 PF05667 DUF812: Protein of un 26.1 1.1E+03 0.024 27.5 22.7 194 71-275 318-514 (594)
337 PF10805 DUF2730: Protein of u 25.7 1.2E+02 0.0027 26.7 4.6 36 386-421 60-95 (106)
338 PF07464 ApoLp-III: Apolipopho 25.7 3.1E+02 0.0068 26.0 7.6 108 35-150 37-151 (155)
339 PF06698 DUF1192: Protein of u 25.6 1.8E+02 0.0038 23.0 4.9 29 390-418 27-55 (59)
340 KOG2070|consensus 25.6 1E+03 0.022 27.0 15.0 59 27-87 106-164 (661)
341 PF10456 BAR_3_WASP_bdg: WASP- 25.4 7.3E+02 0.016 25.3 20.8 42 258-302 193-234 (237)
342 PRK13182 racA polar chromosome 25.2 3.6E+02 0.0077 26.1 8.1 60 390-463 91-150 (175)
343 PF10805 DUF2730: Protein of u 25.1 2.5E+02 0.0055 24.7 6.5 37 425-461 59-95 (106)
344 PHA02562 46 endonuclease subun 24.4 1.1E+03 0.023 26.8 34.2 31 92-122 216-246 (562)
345 PF03961 DUF342: Protein of un 24.1 1.8E+02 0.0039 32.5 6.8 74 391-464 334-408 (451)
346 KOG3801|consensus 24.1 2.1E+02 0.0046 24.5 5.3 45 416-460 32-76 (94)
347 PF05701 WEMBL: Weak chloropla 23.7 1.1E+03 0.024 26.8 39.3 163 99-266 51-232 (522)
348 PF07439 DUF1515: Protein of u 23.7 5.2E+02 0.011 23.0 8.1 61 391-466 8-68 (112)
349 KOG3725|consensus 23.4 8.2E+02 0.018 25.1 15.5 39 61-99 111-149 (375)
350 KOG4674|consensus 23.4 1.9E+03 0.041 29.3 42.7 106 93-206 637-746 (1822)
351 PF09304 Cortex-I_coil: Cortex 23.3 5.3E+02 0.011 22.9 9.7 38 388-425 13-50 (107)
352 PF04977 DivIC: Septum formati 23.3 1.3E+02 0.0029 24.2 4.3 34 391-424 17-50 (80)
353 PF05276 SH3BP5: SH3 domain-bi 23.0 8.2E+02 0.018 25.0 25.7 68 178-245 78-154 (239)
354 PRK00409 recombination and DNA 22.9 1.4E+03 0.03 27.6 16.2 108 140-279 504-619 (782)
355 KOG2264|consensus 22.7 3.4E+02 0.0073 31.0 8.1 56 393-467 95-150 (907)
356 PF11302 DUF3104: Protein of u 22.6 98 0.0021 25.6 3.0 26 603-628 4-34 (75)
357 PF14662 CCDC155: Coiled-coil 22.4 7.5E+02 0.016 24.3 26.9 33 259-291 150-182 (193)
358 PF13514 AAA_27: AAA domain 22.1 1.6E+03 0.036 28.2 33.3 14 37-50 762-775 (1111)
359 PF00038 Filament: Intermediat 22.0 9.1E+02 0.02 25.1 35.3 12 450-461 295-306 (312)
360 KOG0018|consensus 21.6 1.6E+03 0.035 28.0 33.3 32 436-467 723-754 (1141)
361 cd07600 BAR_Gvp36 The Bin/Amph 21.4 8.8E+02 0.019 24.7 17.2 47 27-73 3-51 (242)
362 PF14584 DUF4446: Protein of u 21.3 2.4E+02 0.0051 26.7 5.9 52 417-468 25-76 (151)
363 PF04011 LemA: LemA family; I 21.3 7.4E+02 0.016 23.8 16.4 37 214-250 120-156 (186)
364 smart00150 SPEC Spectrin repea 21.2 4.5E+02 0.0099 21.3 9.4 63 392-455 32-94 (101)
365 PF10212 TTKRSYEDQ: Predicted 21.0 1.3E+03 0.027 26.4 13.9 34 6-39 170-203 (518)
366 KOG0979|consensus 21.0 1.6E+03 0.035 27.7 27.4 18 306-323 431-448 (1072)
367 PRK00846 hypothetical protein; 20.9 4.9E+02 0.011 21.6 8.9 28 440-467 36-63 (77)
368 PF10146 zf-C4H2: Zinc finger- 20.7 8.9E+02 0.019 24.5 14.3 48 92-139 35-82 (230)
369 PF04108 APG17: Autophagy prot 20.6 1.2E+03 0.025 25.8 26.3 29 23-51 194-222 (412)
370 PF10046 BLOC1_2: Biogenesis o 20.6 5.6E+02 0.012 22.1 9.3 60 392-467 36-95 (99)
371 cd07624 BAR_SNX7_30 The Bin/Am 20.5 8.1E+02 0.017 24.0 25.3 32 256-287 156-187 (200)
372 TIGR01010 BexC_CtrB_KpsE polys 20.4 8.1E+02 0.017 26.3 10.7 74 393-469 165-238 (362)
373 PRK04406 hypothetical protein; 20.3 5E+02 0.011 21.4 9.2 27 440-466 34-60 (75)
No 1
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=9.7e-46 Score=370.57 Aligned_cols=248 Identities=39% Similarity=0.691 Sum_probs=238.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--cccccccHHHHHHHHHHHHHHHHHH
Q psy10868 1 VFQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE--EEDYQYSTCKAFKCVLDEVTDLAGQ 78 (649)
Q Consensus 1 ~L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~--~~~~~~t~~~aw~~ll~e~~~~A~~ 78 (649)
.|||||+.|.+|+.+||+||++|..|++||++||.+||++|++|+++|.+++. +..+.+|.+.+|..+|.+++.+|.+
T Consensus 2 eL~Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q 81 (252)
T cd07675 2 ELWDQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQ 81 (252)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999998863 2223568889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q psy10868 79 HEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSR 158 (649)
Q Consensus 79 H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r 158 (649)
|+.+|+.|..+|+.+|..+..+++..||.++.++.+++
T Consensus 82 ~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klq------------------------------------------ 119 (252)
T cd07675 82 REVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQ------------------------------------------ 119 (252)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------
Confidence 99999999999999999999999999999999999998
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10868 159 AEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQ 238 (649)
Q Consensus 159 ~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~ 238 (649)
+.|...++.|+++|++|+++|+++|.|+.++.+|++|++.++.+++|+++++..+.+.+++++|+|...
T Consensus 120 -----------k~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~ 188 (252)
T cd07675 120 -----------QYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQ 188 (252)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q psy10868 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA 301 (649)
Q Consensus 239 l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~ 301 (649)
|+.+|..+..||.++||.+|+.||+|++.|+.+|+++|..++.++..+.|++..|+++|..++
T Consensus 189 L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~~i~~cl~~~~~~~ 251 (252)
T cd07675 189 LQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSERKVIPIISKCLEGMVLAA 251 (252)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999998764
No 2
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=2.9e-45 Score=371.94 Aligned_cols=248 Identities=44% Similarity=0.769 Sum_probs=238.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---cccccccHHHHHHHHHHHHHHHHH
Q psy10868 1 VFQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE---EEDYQYSTCKAFKCVLDEVTDLAG 77 (649)
Q Consensus 1 ~L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~---~~~~~~t~~~aw~~ll~e~~~~A~ 77 (649)
+|||||+.|.+|+++||+||++|..||+|||+||.+||++|++|+++|.+++. +..+.+|+..+|..++++++.+|.
T Consensus 2 eL~D~~~~l~k~~~~Gi~~~~~i~~f~kERa~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~ 81 (253)
T cd07676 2 ELWDQFDNLEKHTQWGIEVLEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAG 81 (253)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999998853 223456899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Q psy10868 78 QHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELS 157 (649)
Q Consensus 78 ~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~ 157 (649)
+|..++++|..+|+.||..+..+++..||.+..++.+++
T Consensus 82 ~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~q----------------------------------------- 120 (253)
T cd07676 82 QHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQ----------------------------------------- 120 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 999999999999999999999999999999999888777
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy10868 158 RAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYAN 237 (649)
Q Consensus 158 r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~ 237 (649)
+.|...++.|+++|++|+.+|+++|.|+.+++++++|+++++.+++|++.++..+.+.+++++++|..
T Consensus 121 ------------k~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~ 188 (253)
T cd07676 121 ------------QHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYSS 188 (253)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q psy10868 238 QLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA 301 (649)
Q Consensus 238 ~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~ 301 (649)
.|+.+|..++.||.++||.||+.||+|++.|+.+|+++|..|+.++..+.|++.+|+++|..++
T Consensus 189 ~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i~~cl~~i~~~~ 252 (253)
T cd07676 189 YLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPIIGKCLDGITKAA 252 (253)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999998875
No 3
>KOG3565|consensus
Probab=100.00 E-value=1.3e-42 Score=388.05 Aligned_cols=562 Identities=28% Similarity=0.411 Sum_probs=391.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cccccc--cccHHHHHHHHHHHHHHHHH
Q psy10868 1 VFQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPK-KEEEDY--QYSTCKAFKCVLDEVTDLAG 77 (649)
Q Consensus 1 ~L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~-~~~~~~--~~t~~~aw~~ll~e~~~~A~ 77 (649)
.+||.|+.+..++++|+++|+++..|+++||.+|++|+++|+.|+++|.-+ +.+.+. ...-...+..++.+...++.
T Consensus 11 ~~~d~~~~~~~~~q~gL~~le~~~~~~~era~~ek~y~~~l~~l~~k~~~q~~~~d~v~~~~~~q~~~~~~lq~~~~i~~ 90 (640)
T KOG3565|consen 11 ELKDAFKATEQSTQNGLDWLERIVQFLKERADKEKEYEEKLRSLCKKFEFQSKSGDEVAESVSGQPLFSELLQRAQQIAT 90 (640)
T ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhhHhhcCCcccchHHHHhccCcchhHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999965443 322221 11234566777888888888
Q ss_pred HHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q psy10868 78 QHEVI-AENLQVFI-IKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLE 155 (649)
Q Consensus 78 ~H~~l-ae~L~~~v-~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~ 155 (649)
+|+.+ .+.+..-. ..-+...+.++...+|.+..+...+.. .
T Consensus 91 r~e~l~~e~~~v~~~~~~t~k~~~~l~~~~~~~~s~~~~~~~-~------------------------------------ 133 (640)
T KOG3565|consen 91 RLEILKIEDEEVKKSLEATLKTSLDLVAQRKQLESDLFQARN-T------------------------------------ 133 (640)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-H------------------------------------
Confidence 88877 44443333 333445555677777777766554441 0
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy10868 156 LSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEY 235 (649)
Q Consensus 156 ~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY 235 (649)
..+...+.+..+.+..|.+.+++.+.+.+.+.+++..++.+..+++++++........++..+++|
T Consensus 134 --------------~~~~~~~ne~~~~~~~~~k~~~~~~ea~~~~~k~d~~l~~s~~e~e~~~~~~~~~~~m~e~~~~~~ 199 (640)
T KOG3565|consen 134 --------------ELLKSTVNEHEDSYYQLEKRRKDQEEAEQFFHKMDENLEGSRLELEKARKLALLREEMLEGSKQDY 199 (640)
T ss_pred --------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhHHH
Confidence 111222333344444455555555555555667777788889999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHHHH
Q psy10868 236 ANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVIE 315 (649)
Q Consensus 236 ~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~ 315 (649)
...+..+|..+.+||.+.+|.+++.+|.|++.|+-.+..+|.+++..+..+.+++.+|..++...+..+++..|.+.|++
T Consensus 200 ~~~~~k~n~~q~~~~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dSa~vlk 279 (640)
T KOG3565|consen 200 LSLLRKFNHVQKQYYFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDSAGVLK 279 (640)
T ss_pred HHHHHHhcCccccCCcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC-CCcccc---------cccc----------cccc-----------
Q psy10868 316 RYKSGFTPPGDIPFEDLSRGGESTPIAPAFPHLMG-MRPEAA---------TVRG----------TMSA----------- 364 (649)
Q Consensus 316 ~~~s~~~~P~~~~FE~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~----------~~~~----------- 364 (649)
.|..++.+|++|.|+++..+.++...+ ..+.. .....+ .+.+ +++.
T Consensus 280 ~~~~~le~P~~f~~e~~~~~~~~~~~~---~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~ 356 (640)
T KOG3565|consen 280 LYFRGLEEPADFPFEDFGQPHDCAARD---NLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAI 356 (640)
T ss_pred HHHccCCCcccCccccccchhhhhhhc---CchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCcccccc
Confidence 999999999999999999887554333 11111 000000 0000 0000
Q ss_pred ------ccccccCCccCCCC-------------CCCCCCCCCCchH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy10868 365 ------GRLKRRNNVGGFGS-------------NGKDDFSNLPPSQ--RKKKLQQRIEEIQHS-IQQESAAREGLIKMKG 422 (649)
Q Consensus 365 ------~~~~~~~~~~~~~~-------------~~~ed~~~lp~eq--r~~~l~~kl~el~~~-i~k~~~~~~gl~km~~ 422 (649)
.+.+..- -.++.. ...+||.++||+| |...++.+|+++..+ ..++...++++.+|..
T Consensus 357 ~~g~~~~~~~e~~-d~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~q~~~~~~~~~~i~e~d~e~~vka~~~~~~v~r~~~ 435 (640)
T KOG3565|consen 357 CFGPTLEPVPEGP-DQVSSQAEVNELVPVYEKCMVVYDYKHLPPEQLIREKELLEKIEELDKEGLVKAIDQFEYVGRMAE 435 (640)
T ss_pred ccccccccCcccc-cccccccccccccccccccccccccccCChhhcchhhhhhhccccchHHHHHHHHHhhhhhhhhHH
Confidence 0000000 001111 0158999999999 999999999999999 9999999999999999
Q ss_pred HHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCC-cCCCCCCCCCCCCccccc
Q psy10868 423 VYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANSPAGMRKNSGGGGNNN-VNSTSGSSGGVNGVQTQQ 501 (649)
Q Consensus 423 ~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~~~~~~~~s~~~~~~~-~~~~~g~~~~~~~~~~~~ 501 (649)
+|..||++|+|..+.+.|.++...++.+.....+...+++++++..++.....+.++..++ ...+.|.+.+++.
T Consensus 436 ~y~~~p~~G~p~~~~~~i~~~~~~~~~~~~~~~~s~s~~~~~e~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----- 510 (640)
T KOG3565|consen 436 EYLFNPSLGNPNSSDGLIASTSITIERLRDASQKSGSLLAAVESSSPPGRLDSLGGRDSNSPTRRHSGDSYLRKS----- 510 (640)
T ss_pred HHhcCccCCCcccCcccchhhcccchhhHHHHhhccchhhhhhcccCcchhhhhccCCCCCcccccCCccccccc-----
Confidence 9999999999999999999999999999999999999999999965432221111111111 1111222211110
Q ss_pred ccccccCCCCCCCccccccCCccc-cccccCCccc-ccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy10868 502 QRVNVNGGSNNNRDERANSAGEEE-ESLSRSASDS-SVHNNNHSKLNSSSTQLPNISLYQREEPDIGTSHTSLPESDPPE 579 (649)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~s~s~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (649)
|... ..+.+... ++.+++.+.. +.+. ....-++++.+.. + ....|.+| ++.+.+
T Consensus 511 ----------~~~~--~~~~~~~~~~v~~~~~~~~~~~s~---~~~~~s~~~~~~~-----~---~~~~~~s~-~~~~~~ 566 (640)
T KOG3565|consen 511 ----------DDEI--KWTEPGGRSGVFTDSESPELSASP---PPPSESGTPVSLR-----S---DKDPHASL-DSLSRD 566 (640)
T ss_pred ----------cccc--cccCCCCcccccccCCCCccccCC---CCCcccccccccC-----C---CCCccccc-CCcccc
Confidence 0000 00000000 0000000000 0000 0000001111100 0 00112233 333333
Q ss_pred -----CCCCCCccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEE-eCCCCceeccccCceeecccC
Q psy10868 580 -----YFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVR-RQTDSEEGFVPTSYIQTIALD 647 (649)
Q Consensus 580 -----~~~~~~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~-~~~g~~~G~vP~syv~~~~~~ 647 (649)
..+.|++++|+|+|.|++.+++++++.+|+++.|++.+.|+||.+++ ..+| ..|+||++|+..++.+
T Consensus 567 ~~~~~~~~~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~-~~g~~Ptsyl~~~~~~ 639 (640)
T KOG3565|consen 567 SLLPPPIPSPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNG-EKGYVPTSYLDVTETK 639 (640)
T ss_pred cccCCCCCCCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCC-cCCCCCcccccccccC
Confidence 33568899999999999999999999999999999999999999999 3344 8999999999987655
No 4
>KOG2856|consensus
Probab=100.00 E-value=8.1e-42 Score=343.17 Aligned_cols=286 Identities=20% Similarity=0.287 Sum_probs=256.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-ccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKK-EEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~-~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
.|..-.+|+++|.++|.+|..+++|||.||+.||++|.-.|++|.... .++.++ |+-.||..++.+.+.++..|..+-
T Consensus 15 nYKrtvKRi~DG~rlc~Dl~~~~qERA~IEk~YaqqL~~wakkWr~lvekgpqyG-t~e~aW~~~~teaerlS~lH~evK 93 (472)
T KOG2856|consen 15 NYKRTVKRIEDGHRLCNDLMNCSQERARIEKAYAQQLTDWAKKWRQLVEKGPQYG-TVEKAWNAFMTEAERLSELHLEVK 93 (472)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999998775 356677 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
++|.++++..++.+.++.- ++..++.++|.+++...|+||+
T Consensus 94 d~L~nd~~e~iktwqK~a~---------------------------H~~vm~G~KE~ke~ED~FrKAQ------------ 134 (472)
T KOG2856|consen 94 DNLINDDVEKIKTWQKEAY---------------------------HKQVMGGFKETKEAEDGFRKAQ------------ 134 (472)
T ss_pred HHHhhhHHHHHHHHHhhhh---------------------------HHHHhcchhhhHHHHHHHHhhc------------
Confidence 9999999999999976431 2334467889999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
+.|...+++++++|+.|+.+|++-..|..+...+.+|..+++..+.|++.+.+++.+++.+++..|...|..+|
T Consensus 135 ------KPWaK~l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~ 208 (472)
T KOG2856|consen 135 ------KPWAKLLKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELN 208 (472)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhcchHHHHHHHHHHHHhhChHhHHHHHHHHhcCCCC
Q psy10868 244 EMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANI-EKKVFPIINQCLDGIIKAADQINEKEDSALVIERYKSGFT 322 (649)
Q Consensus 244 ~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~-~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~~~~s~~~ 322 (649)
+. ...|.+.|..+|..+|..|+.|+.||+++|.....+ ...-...+...+..|.+.|.+.|.+.|+..|-..++.|.
T Consensus 209 ~y-t~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~hldl~~~~~~~~ly~eleqsIr~Ad~eeDLrww~s~hG~~m- 286 (472)
T KOG2856|consen 209 KY-TPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQRHLDLSRNSSYSGLYRELEQSIRAADAEEDLRWWRSNHGPGM- 286 (472)
T ss_pred cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhccchHHHHHHHHhcCCCcc-
Confidence 99 788999999999999999999999999999987755 344456688899999999999999999999988765544
Q ss_pred CCCCc-ccccCCCCCCCC
Q psy10868 323 PPGDI-PFEDLSRGGEST 339 (649)
Q Consensus 323 ~P~~~-~FE~~~~~~~~~ 339 (649)
+..| .|++|+++..++
T Consensus 287 -amnWPqF~E~s~d~~rt 303 (472)
T KOG2856|consen 287 -AMNWPQFEEWSPDLQRT 303 (472)
T ss_pred -ccCCchHhhcChhhhhH
Confidence 5555 599998875433
No 5
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=2.4e-41 Score=347.21 Aligned_cols=261 Identities=20% Similarity=0.298 Sum_probs=232.3
Q ss_pred Cccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHH
Q psy10868 1 VFQD----QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLA 76 (649)
Q Consensus 1 ~L~D----gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A 76 (649)
.||+ ||+.|..|+++|+.+|++|..||++||.||++||++|.||++++... ..+| |+..+|..+..+++.+|
T Consensus 5 ~Fwg~~~~G~~~L~~r~k~g~~~~kel~~f~keRa~iEe~Yak~L~kLak~~~~~---~~~G-t~~~~~~~~~~e~e~~a 80 (269)
T cd07673 5 NFWGEKNSGFDVLYHNMKHGQISTKELSDFIRERATIEEAYSRSMTKLAKSASNY---SQLG-TFAPVWDVFKTSTEKLA 80 (269)
T ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCcC-hHHHHHHHHHHHHHHHH
Confidence 3676 99999999999999999999999999999999999999999998644 2344 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Q psy10868 77 GQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLEL 156 (649)
Q Consensus 77 ~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~ 156 (649)
..|..+|..|++ ++++|..|.+++.+.||++.+...... ++
T Consensus 81 ~~H~~la~~L~~-~~~~l~~~~~~~~k~rK~~ke~~~~~~--------------------------------~~------ 121 (269)
T cd07673 81 NCHLELVRKLQE-LIKEVQKYGEEQVKSHKKTKEEVAGTL--------------------------------EA------ 121 (269)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhhHH--------------------------------HH------
Confidence 999999999985 779999999999999999865322111 00
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10868 157 SRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYA 236 (649)
Q Consensus 157 ~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~ 236 (649)
.+.|......++|||++|+..|++.+.++. .+.++++++|+..++ ..|+.+|.
T Consensus 122 ------------~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~~--------~~~t~k~leK~~~k~-------~ka~~~Y~ 174 (269)
T cd07673 122 ------------VQNIQSITQALQKSKENYNAKCLEQERLKK--------EGATQREIEKAAVKS-------KKATESYK 174 (269)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHH-------HHHHHHHH
Confidence 166677788999999999999999987642 245789999986655 44778899
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHHHHH
Q psy10868 237 NQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVIER 316 (649)
Q Consensus 237 ~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~~ 316 (649)
.+|..+|.. +.+|++.||.+|+.||++|++||.+|+++|+.|+++++.+++.+.+|++.|+.++++||+..|+..||+.
T Consensus 175 ~~v~~l~~~-~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~d~~~Di~~fi~~ 253 (269)
T cd07673 175 LYVEKYALA-KADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANTTVESLIQKFAES 253 (269)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999 5699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcccccC
Q psy10868 317 YKSGFTPPGDIPFEDL 332 (649)
Q Consensus 317 ~~s~~~~P~~~~FE~~ 332 (649)
++||+.||+|+.||+|
T Consensus 254 ~gTG~~~P~~~~fE~~ 269 (269)
T cd07673 254 KGTGKERPGPIEFEEC 269 (269)
T ss_pred cCCCCCCCCCCCCCCC
Confidence 9999999999999987
No 6
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=100.00 E-value=3e-41 Score=345.92 Aligned_cols=248 Identities=52% Similarity=0.897 Sum_probs=235.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccHHHHHHHHHHHHHHHHHHH
Q psy10868 1 VFQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-EEDYQYSTCKAFKCVLDEVTDLAGQH 79 (649)
Q Consensus 1 ~L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~-~~~~~~t~~~aw~~ll~e~~~~A~~H 79 (649)
.|||||+.|.+|+++|+.+|++|..||++||+||.+||++|.+|+++|.++.. +.+..+|+..+|..|+.+++.+|..|
T Consensus 2 ~L~d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H 81 (251)
T cd07653 2 ELWDQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQH 81 (251)
T ss_pred cchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999987743 22245689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q psy10868 80 EVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRA 159 (649)
Q Consensus 80 ~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~ 159 (649)
..+|+.|.++|++||..+.+++++.||++.+++.+++
T Consensus 82 ~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~------------------------------------------- 118 (251)
T cd07653 82 ELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQ------------------------------------------- 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999999999999988
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10868 160 EHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQL 239 (649)
Q Consensus 160 ~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l 239 (649)
+.|...+..++|+|++|+..|++++.|+.++.++..+++.++++++|++.++.++...+.+|+++|..+|
T Consensus 119 ----------~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l 188 (251)
T cd07653 119 ----------QKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQL 188 (251)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q psy10868 240 QRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA 301 (649)
Q Consensus 240 ~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~ 301 (649)
..+|..++.||.++||.+|+.||+||++|+.+|+++|..|++++..+++.+.+|++.|..++
T Consensus 189 ~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (251)
T cd07653 189 QKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIAKCLDGIKKAG 250 (251)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 7
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=6.1e-40 Score=337.75 Aligned_cols=257 Identities=18% Similarity=0.329 Sum_probs=231.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
.||++|..++++|+.+|++|..||+|||.||++||++|.||++++.... . .+|+..+|..|+.+++.+|..|..++
T Consensus 5 ~G~~~L~~r~k~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~---~-~gt~~~~w~~i~~~~e~~a~~H~~l~ 80 (261)
T cd07648 5 NGFDVLYHNMKHGQIAVKELADFLRERATIEETYSKALNKLAKQASNSS---Q-LGTFAPLWLVLRVSTEKLSELHLQLV 80 (261)
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C-cCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999997753 2 34999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
..|. +++++|..+..++.+.||.+.+...... +
T Consensus 81 ~~L~-~~~~~l~~~~~~~~k~rK~~k~~~~~~~--------------------------------k-------------- 113 (261)
T cd07648 81 QKLQ-ELIKDVQKYGEEQHKKHKKVKEEESGTA--------------------------------E-------------- 113 (261)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------------------------H--------------
Confidence 9996 6889999999999999999887653322 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
+++.|......++|||++|+..|++.+.++.. ..+.++++|+..++ .+|+++|..+|..+|
T Consensus 114 ----~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~--------~~s~k~~eK~~~K~-------~ka~~~Y~~~v~~~~ 174 (261)
T cd07648 114 ----AVQAIQTTTAALQKAKEAYHARCLELERLRRE--------NASPKEIEKAEAKL-------KKAQDEYKALVEKYN 174 (261)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------cCCHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 12677788889999999999999999987531 22678888888877 556789999999999
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHHHHHhcCCCCC
Q psy10868 244 EMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVIERYKSGFTP 323 (649)
Q Consensus 244 ~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~~~~s~~~~ 323 (649)
..+ ..|...||.+|+.||++|++||.+|+++|+.|++++..+++.+.+|++.|..+++.||+..|++.||+.++||+.+
T Consensus 175 ~~~-~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~id~~~Di~~fv~~~gtG~~~ 253 (261)
T cd07648 175 NIR-ADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDELTVDKLLRQFVESKGTGTEK 253 (261)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHcCCCCCCC
Confidence 994 5589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q psy10868 324 PGDIPFED 331 (649)
Q Consensus 324 P~~~~FE~ 331 (649)
|+++.||+
T Consensus 254 P~~~~fe~ 261 (261)
T cd07648 254 PELIEFEE 261 (261)
T ss_pred CCCCCCCC
Confidence 99999986
No 8
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=1.8e-38 Score=325.81 Aligned_cols=257 Identities=17% Similarity=0.267 Sum_probs=223.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
.||+.|..++++|+.+|++|..||+|||.||++||++|.|||+.... ++.+| |+..+|..++.+++.+|..|..++
T Consensus 5 ~G~~~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak~L~klak~~~~---~~e~G-tl~~~w~~~~~~~E~~a~~H~~l~ 80 (261)
T cd07674 5 AGFDVLYHNMKHGQISTKELADFVRERAAIEETYSKSMSKLSKMASN---GSPLG-TFAPMWEVFRVSSDKLALCHLELM 80 (261)
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CCccc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999976653 33344 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
..|. +++++|..|.+++.+.+|+..+...... +
T Consensus 81 ~~L~-~~~~~i~~~~~~~~k~~kk~~e~~~~~~-------------------------------~--------------- 113 (261)
T cd07674 81 RKLN-DLIKDINRYGDEQVKIHKKTKEEAIGTL-------------------------------E--------------- 113 (261)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH-------------------------------H---------------
Confidence 9998 5669999998887777777533221100 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
.++.+......++|+|++|+..|++.+.|.. .+.++++++|+..+.. +|..+|..++..+|
T Consensus 114 ----~~q~~q~~~~~l~kaK~~Y~~~cke~e~a~~--------~~~s~k~leK~~~K~~-------ka~~~y~~~~~ky~ 174 (261)
T cd07674 114 ----AVQSLQVQSQHLQKSRENYHSKCVEQERLRR--------EGVPQKELEKAELKTK-------KAAESLRGSVEKYN 174 (261)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 0144566778899999999999999988752 3568899999886654 45567999999999
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHHHHHhcCCCCC
Q psy10868 244 EMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVIERYKSGFTP 323 (649)
Q Consensus 244 ~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~~~~s~~~~ 323 (649)
.. +..|++.||.+|+.||++|++||.+|+++|+.|+++.+.+++.+.+|++.|..++..||+..|++.||+.+++|+.|
T Consensus 175 ~~-~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~id~~~Di~~fv~~~~tG~~~ 253 (261)
T cd07674 175 RA-RGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHVQIGQVHEEFKQNVENVGVENLIRKFAESKGTGKER 253 (261)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 99 56699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q psy10868 324 PGDIPFED 331 (649)
Q Consensus 324 P~~~~FE~ 331 (649)
|+|++||+
T Consensus 254 P~~~~fE~ 261 (261)
T cd07674 254 PGPVGFEE 261 (261)
T ss_pred CCCCCCCC
Confidence 99999986
No 9
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=100.00 E-value=1.4e-37 Score=312.74 Aligned_cols=230 Identities=17% Similarity=0.245 Sum_probs=215.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccHHHHHHHHHHHHHHHHHHHHH
Q psy10868 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-EEDYQYSTCKAFKCVLDEVTDLAGQHEV 81 (649)
Q Consensus 3 ~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~-~~~~~~t~~~aw~~ll~e~~~~A~~H~~ 81 (649)
..|.+.|.+++++|++|+++|..|+++|++||.+||+.|.+|+++|.+... ...+++++..+|..++++++.+|++|..
T Consensus 4 ~~~h~~l~~~~~~ei~lLe~i~~F~reRa~iE~EYA~~L~~L~kq~~k~~~~~~~~~s~~~~sW~~iL~ete~~A~~~~~ 83 (237)
T cd07657 4 QSGHEALLKRQDAELRLLETMKKYMAKRAKSDREYASTLGSLANQGLKIEAGDDLQGSPISKSWKEIMDSTDQLSKLIKQ 83 (237)
T ss_pred cchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCcccCCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999965432 2234678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhh
Q psy10868 82 IAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEH 161 (649)
Q Consensus 82 lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~ 161 (649)
+|+.|...|+.+|..+..+.+..||++.+++.+++
T Consensus 84 ~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~--------------------------------------------- 118 (237)
T cd07657 84 HAEALESGTLDKLTLLIKDKRKAKKAYQEERQQID--------------------------------------------- 118 (237)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10868 162 LQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQR 241 (649)
Q Consensus 162 ~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~ 241 (649)
+.+..++++|+|+|++|++.|++++.|+.+++++..+.+.++++++|++.++..+..++.+|+|+|..+|+.
T Consensus 119 --------~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~ 190 (237)
T cd07657 119 --------EQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLE 190 (237)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 242 ANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKK 285 (649)
Q Consensus 242 ~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~ 285 (649)
+|.++.+||.++||.|++.||+|++.||..++++|..|+.+..-
T Consensus 191 aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~~~~~ 234 (237)
T cd07657 191 AQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLRYSDL 234 (237)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999988543
No 10
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=100.00 E-value=5e-36 Score=307.05 Aligned_cols=236 Identities=24% Similarity=0.374 Sum_probs=208.9
Q ss_pred ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccHHHHHHHHHHHHHHHHHH
Q psy10868 2 FQD--QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-EEDYQYSTCKAFKCVLDEVTDLAGQ 78 (649)
Q Consensus 2 L~D--gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~-~~~~~~t~~~aw~~ll~e~~~~A~~ 78 (649)
||| +|+.+.+|+++|+.+|++|..||+|||+||++||++|.+|+++|.+... ++++| |+..+|..++.+++.+|..
T Consensus 1 FW~~~~y~~~~kr~~~G~~~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~~~~~e~g-sl~~aw~~~~~e~e~~a~~ 79 (258)
T cd07655 1 FWEVGNYKRTVKRIEDGHKLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEKGPEYG-TLETAWKGLLSEAERLSEL 79 (258)
T ss_pred CCCCCCchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC-hHHHHHHHHHHHHHHHHHH
Confidence 566 8999999999999999999999999999999999999999999987753 33444 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q psy10868 79 HEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSR 158 (649)
Q Consensus 79 H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r 158 (649)
|..+|+.|..+|..+|..+.++.. .|.+. ..+++.+++...+.+|+
T Consensus 80 H~~l~~~L~~~v~~~i~~~~~e~~--~k~~~-------------------------~~~ke~K~~e~~~~kaq------- 125 (258)
T cd07655 80 HLSIRDKLLNDVVEEVKTWQKENY--HKSMM-------------------------GGFKETKEAEDGFAKAQ------- 125 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHh-------------------------hhhHHHHHHHHHHHHHh-------
Confidence 999999999999999999986532 11111 11233344445555555
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10868 159 AEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQ 238 (649)
Q Consensus 159 ~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~ 238 (649)
+.|...++.|+|||++|+..|++++.|..++.++..|..+++++++|++.++.++...+..++++|..+
T Consensus 126 -----------k~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~ 194 (258)
T cd07655 126 -----------KPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKA 194 (258)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEK 284 (649)
Q Consensus 239 l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~ 284 (649)
|..+|..+ .+|.++||.+|+.||+||++||.+|+++|+.|+++..
T Consensus 195 l~~~n~~~-~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l~ 239 (258)
T cd07655 195 LEDLNKYN-PRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHLD 239 (258)
T ss_pred HHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999995 7899999999999999999999999999999999854
No 11
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=100.00 E-value=1.5e-35 Score=299.24 Aligned_cols=251 Identities=19% Similarity=0.294 Sum_probs=220.2
Q ss_pred ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccHHHHHHHHHHHHHHHHHH
Q psy10868 2 FQD--QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-EEDYQYSTCKAFKCVLDEVTDLAGQ 78 (649)
Q Consensus 2 L~D--gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~-~~~~~~t~~~aw~~ll~e~~~~A~~ 78 (649)
||+ +|+.+.+|+++|..+|++|..||++||.||.+||++|.+|+++|.+... ++.+ +|+..+|..|+.+++.+|..
T Consensus 1 fw~~~~y~~~~kr~~~g~~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~~~~~~-Gtl~~aw~~i~~etE~ia~~ 79 (258)
T cd07680 1 FWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQY-GSLERAWGAIMTEADKVSEL 79 (258)
T ss_pred CCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCc-chHHHHHHHHHHHHHHHHHH
Confidence 455 8999999999999999999999999999999999999999999987643 3334 49999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q psy10868 79 HEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSR 158 (649)
Q Consensus 79 H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r 158 (649)
|..++++|.++++.+|+.+.++. .++.+...+++.+++...+++|+
T Consensus 80 H~~la~~L~~e~~e~~r~~qk~~---------------------------~~k~~~~~~ke~K~~e~~~~KaQ------- 125 (258)
T cd07680 80 HQEVKNNLLNEDLEKVKNWQKDA---------------------------YHKQIMGGFKETKEAEDGFRKAQ------- 125 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH---------------------------HHHHHHhhhHHHHHHHHHHHHHH-------
Confidence 99999999999999988886633 12334445677777888888887
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10868 159 AEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQ 238 (649)
Q Consensus 159 ~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~ 238 (649)
+.|...++.++++|+.|+..|++.+.|..++.+++++.++++++++|++.+++++.+.+++++++|..+
T Consensus 126 -----------K~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~ 194 (258)
T cd07680 126 -----------KPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKV 194 (258)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcchHHHHHHHHH
Q psy10868 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKK-VFPIINQCLDGIIK 299 (649)
Q Consensus 239 l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~-~~~~~~~~~~~l~~ 299 (649)
|..+|.. +.+|.++||.+|+.||++|++||.+|+++|+.++.+..- -.+.+...+..|.+
T Consensus 195 l~~ln~~-~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~l~~~~~~~~~~~~~~l~~ 255 (258)
T cd07680 195 LDDVGKT-TPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAESSSYAHVYRELEQ 255 (258)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhHHHHHHHHHh
Confidence 9999999 999999999999999999999999999999999987422 22224444444443
No 12
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=1.6e-35 Score=300.50 Aligned_cols=234 Identities=20% Similarity=0.309 Sum_probs=218.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
.||+.|..|+++|+.+|++|..||++||+||.+||++|.+|++++.+.. ++| |+..+|..|+.+++.+|..|..+|
T Consensus 5 ~G~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLak~~~~~~---e~g-sl~~aw~~i~~e~e~~a~~H~~la 80 (239)
T cd07647 5 TGFDTLLQRLKEGKKMCKELEDFLKQRAKAEEDYGKALLKLSKSAGPGD---EIG-TLKSSWDSLRKETENVANAHIQLA 80 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---ccc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999986442 334 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
++|+..| ..|..+..++.+.||++.+.+.+++
T Consensus 81 ~~L~~~v-~~l~~~~~~~~~~~K~~~~~~~k~q----------------------------------------------- 112 (239)
T cd07647 81 QSLREEA-EKLEEFREKQKEERKKTEDIMKRSQ----------------------------------------------- 112 (239)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 9999975 6799999999999999999888887
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
+.+...+..|+|||++|+..|+++|.|+..+.++..+ .++++++|++.++.++...+.+++++|..+|..+|
T Consensus 113 ------k~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~--~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~ 184 (239)
T cd07647 113 ------KNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSG--AQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLE 184 (239)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888999999999999999999999999887753 68899999999999999999999999999999999
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q psy10868 244 EMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGII 298 (649)
Q Consensus 244 ~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~ 298 (649)
.. +..|+.+||.+|+.||++|++||.+|++.|+.|+++.+..|....++++.|+
T Consensus 185 ~~-~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~is~~cv~~d~~~e~~r 238 (239)
T cd07647 185 DA-RVEWESEHATACQVFQNMEEERIKFLRNALWVHCNLGSMQCVKLDEMYEDVR 238 (239)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccchHHHHHhh
Confidence 99 5669999999999999999999999999999999999999999999999886
No 13
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=100.00 E-value=9.3e-35 Score=294.76 Aligned_cols=231 Identities=17% Similarity=0.263 Sum_probs=213.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
.||+.|..|+++|+.+|++|..||++||+||.+||++|.+|++++.... .. +|+..+|..|+.+++.+|..|..+|
T Consensus 5 ~G~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~---~~-gsl~~a~~~i~~e~e~~a~~H~~~a 80 (236)
T cd07651 5 AGFDVIQTRIKDSLRTLEELRSFYKERASIEEEYAKRLEKLSRKSLGGS---EE-GGLKNSLDTLRLETESMAKSHLKFA 80 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC---Cc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999998642 23 4899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
+.|..+|++||..|..++++.||.+.+.+.+++
T Consensus 81 ~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~----------------------------------------------- 113 (236)
T cd07651 81 KQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLL----------------------------------------------- 113 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999999988887
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
+.+...+..++|+|++|+..|++++.++.+.. ..+.++++|+..++.++...+..++++|...|..+|
T Consensus 114 ------k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~------~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~ 181 (236)
T cd07651 114 ------KKKQDQEKYLEKAREKYEADCSKINSYTLQSQ------LTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALR 181 (236)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888999999999999999998765322 235678999999999999999999999999999999
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q psy10868 244 EMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGII 298 (649)
Q Consensus 244 ~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~ 298 (649)
.. +.+|.++||.+|+.||+||+.||.+|++.|+.|+++.+..|....++++.++
T Consensus 182 ~~-~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv~~d~~~e~~r 235 (236)
T cd07651 182 EL-NEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCVDDDESCERIR 235 (236)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHhh
Confidence 99 7789999999999999999999999999999999999999999999998875
No 14
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=100.00 E-value=3.3e-34 Score=288.92 Aligned_cols=235 Identities=19% Similarity=0.240 Sum_probs=218.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
.||+.|..|+++|+.+|++|..||+|||+||.+|||+|.+|++++... .+++| |+..+|..++.+++.+|.+|..++
T Consensus 5 ~Gy~~l~~r~~~g~~~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g--~~E~G-Tl~~sw~~~~~E~e~~a~~H~~la 81 (240)
T cd07672 5 GGYDCIIQHLNDGRKNCKEFEDFLKERASIEEKYGKELLNLSKKKPCG--QTEIN-TLKRSLDVFKQQIDNVGQSHIQLA 81 (240)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--Ccccc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999998653 22345 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
+.|..++ .+|..|...++..||++.+.+.+++
T Consensus 82 ~~L~~~~-~~~~~f~~~qk~~rKk~e~~~ek~~----------------------------------------------- 113 (240)
T cd07672 82 QTLRDEA-KKMEDFRERQKLARKKIELIMDAIH----------------------------------------------- 113 (240)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 9999865 5999999999999999999888887
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
+.|..+++.+++||++|+..|++.+.|.+.+.. ++..++.++++|+..++.++...+..++.+|...|..+|
T Consensus 114 ------K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~--~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~ 185 (240)
T cd07672 114 ------KQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNR--NANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLD 185 (240)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999887774 355667899999999999999999999999999999999
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q psy10868 244 EMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGII 298 (649)
Q Consensus 244 ~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~ 298 (649)
.. +..|+.+|...|+.||+||++||.+|+++|+.|+++.+.+|.....+++.|+
T Consensus 186 ~~-~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n~~s~~Cv~~D~~~e~~r 239 (240)
T cd07672 186 KI-REDWQKEHVKACEFFEKQECERINFFRNAVWTHVNQLSQQCVTSDEMYEEVR 239 (240)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCcHHHHHHHh
Confidence 98 8999999999999999999999999999999999999999999999998886
No 15
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=100.00 E-value=4.2e-34 Score=288.50 Aligned_cols=238 Identities=16% Similarity=0.203 Sum_probs=222.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVI 82 (649)
Q Consensus 3 ~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~l 82 (649)
..||+.|..++++|..+|++|..||++||.||.+||++|.+|++++.+.. ++ +|+..+|..++.+++.+|.+|..+
T Consensus 4 ~~G~~~l~~r~~~g~~~c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~---e~-gTl~~a~~~~~~e~e~~a~~H~~i 79 (242)
T cd07671 4 NTGYEILLQRLLDGRKMCKDVEELLKQRAQAEERYGKELVQIARKAGGQT---EI-NTLKASFDQLKQQIENIGNSHIQL 79 (242)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc---cc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999987543 23 499999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhc
Q psy10868 83 AENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHL 162 (649)
Q Consensus 83 ae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~ 162 (649)
++.|.+++ ++|..|...++..||++.+.+.|++
T Consensus 80 a~~L~~~~-~~l~~f~~~qke~rK~~e~~~eK~q---------------------------------------------- 112 (242)
T cd07671 80 AGMLREEL-KSLEEFRERQKEQRKKYEAVMERVQ---------------------------------------------- 112 (242)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 99999985 7899999999999999999888888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10868 163 QDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242 (649)
Q Consensus 163 ~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~ 242 (649)
+.|...++.|++||++|+..|++++.|.+.+.++.+ ..++++++|++.++.++.+.+..++++|...|..+
T Consensus 113 -------k~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~--~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l 183 (242)
T cd07671 113 -------KSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSS--TGNPKQSEKSQNKAKQCRDAATEAERVYKQNIEQL 183 (242)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999877776655 56899999999999999999999999999999999
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q psy10868 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA 301 (649)
Q Consensus 243 N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~ 301 (649)
+.. +..|+.+|..+|+.||++|++||.+|+++|+.|+++.+.+|.....+++.|+.++
T Consensus 184 ~~~-~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~~s~~Cv~dD~~~e~~r~~l 241 (242)
T cd07671 184 DKA-RTEWETEHILTCEVFQLQEDDRITILRNALWVHCNHFSMQCVKDDELYEEVRTTL 241 (242)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHcCcHHHHHHHHHhc
Confidence 998 8999999999999999999999999999999999999999999999999998765
No 16
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=100.00 E-value=3e-34 Score=284.76 Aligned_cols=228 Identities=20% Similarity=0.279 Sum_probs=205.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccHHHHHHHHHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-EEDYQYSTCKAFKCVLDEVTDLAGQHE 80 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~-~~~~~~t~~~aw~~ll~e~~~~A~~H~ 80 (649)
|..||+.|.+++++||+++++|..|+++||+||++||+.|++|+++|.++.. ..++.+.+..+|..|+++++.+|++|.
T Consensus 3 l~~~~e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~ 82 (234)
T cd07686 3 LRNSHEALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMK 82 (234)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999855532 224455677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q psy10868 81 VIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAE 160 (649)
Q Consensus 81 ~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~ 160 (649)
.+|+.|...|+..|..++.+.+..||.+.+.+.++.
T Consensus 83 ~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~-------------------------------------------- 118 (234)
T cd07686 83 THAEELNSGPLHRLTMMIKDKQQVKKSYIGVHQQIE-------------------------------------------- 118 (234)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999999888887
Q ss_pred hcccchhHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10868 161 HLQDGDHLMKILRN-QVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQL 239 (649)
Q Consensus 161 ~~~~~~~~~k~l~~-~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l 239 (649)
+++.. ++..|.|+|+.|+..|++++.|+.+++++.... +..+|++.++..+..++.+++|+|.++|
T Consensus 119 ---------~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~~a~~~g----k~~~Ka~~k~~~~~~km~~~kN~Yll~i 185 (234)
T cd07686 119 ---------AEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDAVAKG----KETEKARERYDKATMKLHMLHNQYVLAV 185 (234)
T ss_pred ---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcc----cchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55543 667889999999999999999999988775431 2358999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 240 QRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKV 286 (649)
Q Consensus 240 ~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~ 286 (649)
..+|.++.+||.++||.+++.||+|.+.|+..|+++|..|+++.+-+
T Consensus 186 ~~aN~~k~~Yy~~~lP~lLd~lQ~l~E~rv~~ln~i~~e~~~~~~~~ 232 (234)
T cd07686 186 KGAQLHQHQYYDFTLPLLLDSLQKMQEEMIKALKGILDEYSQITSLV 232 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999986543
No 17
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=8.3e-34 Score=288.66 Aligned_cols=250 Identities=18% Similarity=0.288 Sum_probs=206.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---ccc---ccccHHHHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE---EED---YQYSTCKAFKCVLDEVTDL 75 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~---~~~---~~~t~~~aw~~ll~e~~~~ 75 (649)
+.+||+.|..++++||+|+++|..|+++||+||.+||++|++|+++|.+++. ... ...+...+|..++++++.+
T Consensus 3 ~~Eq~~~L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakky~~Kk~~~~~~~~~~~~~s~~~~W~~~L~qt~~~ 82 (264)
T cd07654 3 HLEQLSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLKREWPGSGELKPEDDRSGYTVWGAWLEGLDAV 82 (264)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccchHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999988742 101 1136789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q psy10868 76 AGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLE 155 (649)
Q Consensus 76 A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~ 155 (649)
|++|..+|+.|...|+.+|..+..+.+..||++.+.+.+++.++...+.+|+|+++.|+.++++...++.++++|+
T Consensus 83 A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~---- 158 (264)
T cd07654 83 AQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQ---- 158 (264)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999966666666666666666555554433333322221
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHH----HHHHHHh
Q psy10868 156 LSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIK----SQHCEDT 231 (649)
Q Consensus 156 ~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~----~~~~~~a 231 (649)
.+..+.+.+++.++.+++|+..++..+ ...+.+|
T Consensus 159 ------------------------------------------~~~~k~~~~~~~sk~~~eK~~~K~~~k~~~~~~k~~~a 196 (264)
T cd07654 159 ------------------------------------------AREARSDLSIFQSRTSLQKASVKLSARKAECSSKATAA 196 (264)
T ss_pred ------------------------------------------HhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233456667888888887666665 5566999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q psy10868 232 KTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKA 300 (649)
Q Consensus 232 k~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~ 300 (649)
+|+|.++|+++|+++..||.++||.|+++ ||..|+..|+++|..|+..+...+..+...+..+...
T Consensus 197 kNeYll~L~~aN~~q~kYY~~dLP~lld~---ld~~~~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~ 262 (264)
T cd07654 197 RNDYLLNLAATNAHQDRYYQTDLPAIIKA---LDGELYDHLKDFLISLSHTELETAQVIQETFQRLLET 262 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999997 6999999999999999999999999888888777643
No 18
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=100.00 E-value=9.8e-33 Score=275.21 Aligned_cols=253 Identities=19% Similarity=0.292 Sum_probs=225.1
Q ss_pred ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-ccccccccHHHHHHHHHHHHHHHHHH
Q psy10868 2 FQD--QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKK-EEEDYQYSTCKAFKCVLDEVTDLAGQ 78 (649)
Q Consensus 2 L~D--gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~-~~~~~~~t~~~aw~~ll~e~~~~A~~ 78 (649)
||+ ||+.+.+|+++|..+|+||..||++||.||+.||+.|.+|+++|.... .++.+| |+..||..|+.+++.+|..
T Consensus 1 Fw~~g~Y~~~vkR~~DG~~~C~dl~~~~~ERA~IE~~Yak~L~~~akkw~~~ie~gpeyG-Tl~~aw~~~~~Eae~~s~~ 79 (258)
T cd07679 1 FWEVGNYKRTVKRIDDGHRLCNDLMNCLHERARIEKVYAQQLTEWAKRWRQLVEKGPQYG-TVEKAWCALMSEAEKVSEL 79 (258)
T ss_pred CCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccc-hHHHHHHHHHHHHHHHHHH
Confidence 565 999999999999999999999999999999999999999999998775 355666 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q psy10868 79 HEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSR 158 (649)
Q Consensus 79 H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r 158 (649)
|..+++.|.+++++.++.+.++.. ++.+...+++..++...|++|+
T Consensus 80 H~~l~~~L~~e~~e~ir~wQKe~~---------------------------hk~~~~~~Ke~k~~e~~f~KaQ------- 125 (258)
T cd07679 80 HLEVKASLMNEDFEKIKNWQKEAF---------------------------HKQMMGGFKETKEAEDGFRKAQ------- 125 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHhhhHHHhHHHHHHHHHh-------
Confidence 999999999998888877765431 2333456788899999999998
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10868 159 AEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQ 238 (649)
Q Consensus 159 ~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~ 238 (649)
+.|...++.++++|+.|+.+|++...|..+...+.+|..++.++++|+..++.++.+.+.+++..|...
T Consensus 126 -----------Kpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~ 194 (258)
T cd07679 126 -----------KPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKS 194 (258)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888899989999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcchHHHHHHHHHHH
Q psy10868 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIE-KKVFPIINQCLDGIIKAA 301 (649)
Q Consensus 239 l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~-~~~~~~~~~~~~~l~~~~ 301 (649)
|..+|.. +.-|.++|..+|+.+|++|++||.+|+++|..++.+. ....+.+...+..|.+.|
T Consensus 195 l~~L~~~-~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~~~l~i~~~~~~~~i~~~L~~~i 257 (258)
T cd07679 195 LKELDQT-TPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKNIYRELEQSI 257 (258)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHhhc
Confidence 9999999 8999999999999999999999999999999999884 233344555555555543
No 19
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=100.00 E-value=1.5e-32 Score=276.43 Aligned_cols=253 Identities=21% Similarity=0.277 Sum_probs=222.3
Q ss_pred ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-ccccccccHHHHHHHHHHHHHHHHHH
Q psy10868 2 FQD--QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKK-EEEDYQYSTCKAFKCVLDEVTDLAGQ 78 (649)
Q Consensus 2 L~D--gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~-~~~~~~~t~~~aw~~ll~e~~~~A~~ 78 (649)
||+ ||+.+.+|+++|..+|++|..||++||.||++||++|.+|++++.+.. .++++| |+..+|..++.+++.+|..
T Consensus 1 fw~~g~Y~~~vkR~~dG~~~C~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g~eyG-TL~~sw~~~~~e~E~ia~~ 79 (258)
T cd07681 1 FWEAGNYRRTVKRIEDGYRLCNDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKGPQYG-TLEKAWHAFLTAAERLSEI 79 (258)
T ss_pred CCCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcccccC-hHHHHHHHHHHHHHHHHHH
Confidence 565 999999999999999999999999999999999999999999997775 355566 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q psy10868 79 HEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSR 158 (649)
Q Consensus 79 H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r 158 (649)
|..++..|.+++.++|+.+.++.. . +.+.+.+++.+++...|++|+
T Consensus 80 H~~l~~~L~~E~~e~ir~~QKe~~--h-------------------------k~~~~g~ke~K~~e~~f~kaq------- 125 (258)
T cd07681 80 HLELRENLVGEDSEKVRAWQKEAF--H-------------------------KQMIGGFRESKEAEEGFRKAQ------- 125 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--H-------------------------HHHhhhhHHHHHHHHHHHHHH-------
Confidence 999999999999999999877642 2 233345677778888888888
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10868 159 AEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQ 238 (649)
Q Consensus 159 ~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~ 238 (649)
+.|...++.++++|+.|+..|++.+.|+.....+.++..++..+++|+..++.++...+.+++.+|..+
T Consensus 126 -----------K~w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~ 194 (258)
T cd07681 126 -----------KPWVKKLKEVESSKKGYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKA 194 (258)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877655555566777889999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcchHHHHHHHHHHH
Q psy10868 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIE-KKVFPIINQCLDGIIKAA 301 (649)
Q Consensus 239 l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~-~~~~~~~~~~~~~l~~~~ 301 (649)
|..+|.. +..|..+|+.+|+.||++|++||.+|+++|..|..+. ....+.+...+..|.+.|
T Consensus 195 v~~L~~~-~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~~l~~~~~~~~~~~~~~l~~~i 257 (258)
T cd07681 195 LEELNRY-NPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLHQHLDLSSSDSFHALYRDLHQTI 257 (258)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHhhc
Confidence 9999997 9999999999999999999999999999999999874 233455777777777654
No 20
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=2.7e-33 Score=282.16 Aligned_cols=225 Identities=20% Similarity=0.310 Sum_probs=188.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc------cccccccHHHHHHHHHHHHHH
Q psy10868 1 VFQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE------EEDYQYSTCKAFKCVLDEVTD 74 (649)
Q Consensus 1 ~L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~------~~~~~~t~~~aw~~ll~e~~~ 74 (649)
.|||||+.|..|++.|++|+++|..||++|++||.+||+.|.+|+++|.+++. ...+.+|...+|..|+++++.
T Consensus 2 qL~dQ~~~L~~~te~~i~lLed~~~F~r~RaeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~~ 81 (241)
T cd07656 2 QLSEQLKCLDLRTEAQVQLLADLQDYFRRRAEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTKQ 81 (241)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999988742 122346899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy10868 75 LAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADL 154 (649)
Q Consensus 75 ~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l 154 (649)
+|++|..+|+.|...|+.+|..+..+....||++.+.+.+++.++...+.+|+++++.|+.++++...|+.+|.+|+
T Consensus 82 ~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae--- 158 (241)
T cd07656 82 ESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAE--- 158 (241)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999988888888888888888888888888777777765
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10868 155 ELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTE 234 (649)
Q Consensus 155 ~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~e 234 (649)
..+. |.. ...+.-. ....+ ...++++++|+++++..+..++.+|+|+
T Consensus 159 ---------------~~~~-------k~~----~~~~~~~---~~~~~----~~~~~~~~eK~k~k~~~~~~k~~~akNe 205 (241)
T cd07656 159 ---------------KQEE-------KQE----QSPEKKL---ERSRS----SKKIEKEVEKRQAKYSEAKLKCTKARNE 205 (241)
T ss_pred ---------------HHHh-------hcc----cccccch---hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 100 0000000 00000 0113467899999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHH
Q psy10868 235 YANQLQRANEMQRQHYTQAMPEVFAQL 261 (649)
Q Consensus 235 Y~~~l~~~N~~q~~~y~~~mp~i~~~l 261 (649)
|.++|+++|+++..||.++||.|+++|
T Consensus 206 Yll~l~~aN~~~~~yy~~~lp~lld~l 232 (241)
T cd07656 206 YLLNLAAANATIHKYFVQDLSDLIDCM 232 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 999999999999999999999999987
No 21
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=100.00 E-value=2.3e-32 Score=276.56 Aligned_cols=221 Identities=18% Similarity=0.272 Sum_probs=195.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
.||+.|.+|+++|+++|++|.+||+|||.||.+||++|++|++++.+.... .. +|+..+|..|+.+++.+|..|..++
T Consensus 5 ~g~~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~-~~-Gtl~~aw~~~~~e~e~~a~~H~~la 82 (239)
T cd07658 5 KGFEELRRYVKQGGDFCKELATVLQERAELELNYAKGLSKLSGKLSKASKS-VS-GTLSSAWTCVAEEMESEADIHRNLG 82 (239)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999554322 23 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
+.|..+|+.||..|..++.+.||.+.+.+.+++
T Consensus 83 ~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~q----------------------------------------------- 115 (239)
T cd07658 83 SALTEEAIKPLRQVLDEQHKTRKPVENEVDKAA----------------------------------------------- 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------HhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYK-------------RADADLELSRAEVEKQRINMAIKSQHCED 230 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~-------------ka~~d~~~sk~eleK~~~k~~~~~~~~~~ 230 (649)
+.|...+..+.++|+.|+..|++.+.|+..+. .+..+...+.++++|+..++.++...+..
T Consensus 116 ------k~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k 189 (239)
T cd07658 116 ------KLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLK 189 (239)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHH
Confidence 55555556666666666666666666665542 23445566778999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 231 TKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSA 280 (649)
Q Consensus 231 ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~ 280 (649)
++.+|..++..++.. +..|+..|..+|+.||++|++|+.+|+++|+.|.
T Consensus 190 ~e~~y~~~~~~l~~~-~~~~~~~~~~~~~~~Q~~E~~rl~~~k~~l~~y~ 238 (239)
T cd07658 190 AENEYYTCCVRLERL-RLEWESALRKGLNQYESLEEERLQHLKHSLSQYL 238 (239)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999997 9999999999999999999999999999999985
No 22
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=2.5e-31 Score=267.91 Aligned_cols=248 Identities=21% Similarity=0.254 Sum_probs=198.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---cccc-cccHHHHHHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE---EEDY-QYSTCKAFKCVLDEVTDLAG 77 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~---~~~~-~~t~~~aw~~ll~e~~~~A~ 77 (649)
+-|||+.|..+++.|++|+++|..|+++|++||.+||+.|++|+++|.+++. +.+. .++...++-.++.++...++
T Consensus 3 ~~eQ~~~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~e~~~~a~ 82 (263)
T cd07678 3 FLEQLSILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNETEMDRSVRTVWGAWREGTAATG 82 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhhhhccccchHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999998851 1111 23333333344456667778
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy10868 78 QHEVIAENLQVFIIKEVT---IFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADL 154 (649)
Q Consensus 78 ~H~~lae~L~~~v~~~L~---~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l 154 (649)
+|+.+++.+...++.... .+.+++ .+|++.+.+.+++.+|...+.+|++++|.|.+.+++...|+.+|.+++
T Consensus 83 Q~~~~~~~~~~~~~~e~~~~~r~~ke~--~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e--- 157 (263)
T cd07678 83 QGRVTRLEAYRRLRDEAGKTGRSAKEQ--VLKKSTEQLQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVE--- 157 (263)
T ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 888888888888877555 444544 899999999999977777777777777777766666666555554432
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHH----HHHHHHHHHH
Q psy10868 155 ELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRIN----MAIKSQHCED 230 (649)
Q Consensus 155 ~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k----~~~~~~~~~~ 230 (649)
. +..+++.+++.++.+++|+..+ +..+...+.+
T Consensus 158 ----------------------------------------~---k~~K~~~~~~~sk~~~eK~~~K~~~~~~~~~~k~~~ 194 (263)
T cd07678 158 ----------------------------------------A---RLNKSDHGIFHSKASLQKLSAKFSAQSAEYSQQLQA 194 (263)
T ss_pred ----------------------------------------H---HhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1225566778889999986444 4666789999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q psy10868 231 TKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKA 300 (649)
Q Consensus 231 ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~ 300 (649)
|+|+|..+|+++|+++..||.++||.|++.| |..|+..|++.|..|+.++..++|+....+..|.++
T Consensus 195 arNeYll~L~aaNa~q~~YY~~dLP~lld~l---D~~~~~~~~e~l~~~~~~e~~~~~~~~~~f~~~~~~ 261 (263)
T cd07678 195 ARNEYLLNLVAANAHLDHYYQEELPAIMKAL---DGDLYERLRDPLTSLSHTELEACEVTQEHFHRIEQA 261 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988 999999999999999999999999999999888764
No 23
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=7.8e-31 Score=263.01 Aligned_cols=221 Identities=20% Similarity=0.253 Sum_probs=194.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVI 82 (649)
Q Consensus 3 ~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~l 82 (649)
..||++|..|+++|..+|++|.+||+|||.||++||++|.+|+++.... +++| |+..+|..|..+++.+|..|..+
T Consensus 4 ~~Gf~vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak~L~klak~~~~~---~e~G-tl~~sw~~~~~e~E~~a~~H~~l 79 (233)
T cd07649 4 VTGFEILLQKQLKGKQMQKEMAEFIRERIKIEEEYAKNLSKLSQSSLAA---QEEG-TLGEAWAQVKKSLADEAEVHLKF 79 (233)
T ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999876532 3445 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhc
Q psy10868 83 AENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHL 162 (649)
Q Consensus 83 ae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~ 162 (649)
+..|..+|.+||..|..++.+.+|.+.+.+.+++
T Consensus 80 a~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~---------------------------------------------- 113 (233)
T cd07649 80 SSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLR---------------------------------------------- 113 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999988877776
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10868 163 QDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242 (649)
Q Consensus 163 ~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~ 242 (649)
+.|...+..+.++|+.|+..|++.+.+...... .+.+.+.++++|++.++. +|..+|..++..+
T Consensus 114 -------K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~--~k~~~s~~~~~K~~~K~~-------Ka~~e~~~~ve~y 177 (233)
T cd07649 114 -------KQLASRYAAVEKARKALLERQKDLEGKTQQLEI--KLSNKTEEDIKKARRKST-------QAGDDLMRCVDLY 177 (233)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 888888899999999999999999987655443 345778888888877664 4556777777777
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q psy10868 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPII 290 (649)
Q Consensus 243 N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~ 290 (649)
+.. +..|+..|+.+|+.||++|+.||.+|+++|+.|..+..++.+.-
T Consensus 178 ~~~-r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~~~~~~~~~ 224 (233)
T cd07649 178 NQA-QSKWFEEMVTTSLELERLEVERIEMIRQHLCQYTQLRHETDMFN 224 (233)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 877 79999999999999999999999999999999999988776543
No 24
>KOG4429|consensus
Probab=100.00 E-value=2e-30 Score=253.98 Aligned_cols=414 Identities=14% Similarity=0.175 Sum_probs=302.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 74 DLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADAD 153 (649)
Q Consensus 74 ~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~ 153 (649)
..|..|.+++.+|..++++|+..+...+++.+|...+++.|....+.+.|.+..|+|+..+...+..+
T Consensus 3 ~hAdiHqkLGkAIe~daIkPl~qiln~QeKk~kaaDNeVEkean~lidk~deqiKaKkkLmV~aKkhe------------ 70 (421)
T KOG4429|consen 3 IHADIHQKLGKAIEEDAIKPLRQILNNQEKKIKAADNEVEKEANKLIDKKDEQIKAKKKLMVLAKKHE------------ 70 (421)
T ss_pred chhHHHHHHhhHhHHHHhhhHHHHHhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhHH------------
Confidence 46889999999999999999999999999999999999999999999999999999987765555322
Q ss_pred HhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHH
Q psy10868 154 LELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKT 233 (649)
Q Consensus 154 l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~ 233 (649)
..++-.++|.+ ..++.+..|...++.+....+++.+.
T Consensus 71 ----------------------------------aL~kl~eSaeq---------e~aekEkrKfa~klkKskdklekedd 107 (421)
T KOG4429|consen 71 ----------------------------------ALEKLEESAEQ---------EKAEKEKRKFALKLKKSKDKLEKEDD 107 (421)
T ss_pred ----------------------------------HHHHHHHHHHH---------hhcchHHHHHHHHhhhhHHHHhhhhh
Confidence 22222222221 12334556888888999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHH
Q psy10868 234 EYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALV 313 (649)
Q Consensus 234 eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~f 313 (649)
+|...-...... +..|+..+..|++.+.++|.+||..+++.|.+|.+.+..+.|.+.+|+.++..+++.+|.+.|.+.+
T Consensus 108 dY~qknmag~kq-Rlk~ENtLekc~eSi~elEkeRia~~cnaL~qYkqhIelfG~nLrqc~eq~hcaiekad~ekd~dai 186 (421)
T KOG4429|consen 108 DYVQKNMAGEKQ-RLKTENTLEKCVESIEELEKERIAHCCNALGQYKQHIELFGPNLRQCFEQHHCAIEKADDEKDEDAI 186 (421)
T ss_pred hHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhhHhhhcccccHHHH
Confidence 998777776655 8999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccCCccCCCCCCCCCCC-CCCchHH
Q psy10868 314 IERYKSGFTPPGDIPFEDLSRGGESTPIAPAFPHLMGMRPEAATVRGTMSAGRLKRRNNVGGFGSNGKDDFS-NLPPSQR 392 (649)
Q Consensus 314 i~~~~s~~~~P~~~~FE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~-~lp~eqr 392 (649)
++......+. ..++ -++.++| .|||. .|..++|
T Consensus 187 meeqailste----------------------------akne--------------flLiD~f----aEd~~eaMdkeRR 220 (421)
T KOG4429|consen 187 MEEQAILSTE----------------------------AKNE--------------FLLIDLF----AEDFGEAMDKERR 220 (421)
T ss_pred HHhccccccc----------------------------ccce--------------eeehhhh----hhchhhhhhHHHH
Confidence 8763221100 0000 0112344 67887 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy10868 393 KKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHM---IEGQLSETDSRLEKLRGELQKYQTYMEESEANSP 469 (649)
Q Consensus 393 ~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~---~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~~ 469 (649)
+.-|..++..|..+|++..++++||++|...|..+..|+|.++ +..-..+...+|+.+++..|||...|++++|++-
T Consensus 221 kqlLepkl~rLdrdiekaskdkeglermlklYnstssfsdaksqaDtaalmden~lkLdfiEa~sYKLndmiaeld~~pn 300 (421)
T KOG4429|consen 221 KQLLEPKLGRLDRDIEKASKDKEGLERMLKLYNSTSSFSDAKSQADTAALMDENILKLDFIEALSYKLNDMIAELDGGPN 300 (421)
T ss_pred HHhhhhhhhhhHHHHHHhhcchhHHHHHHHHhccccccccchhhhHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999877 4555678889999999999999999999999753
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCCCCCcccccccccccCCCCCCCccccccCCccccccccCCcccccccCCCCCCCCCC
Q psy10868 470 AGMRKNSGGGGNNNVNSTSGSSGGVNGVQTQQQRVNVNGGSNNNRDERANSAGEEEESLSRSASDSSVHNNNHSKLNSSS 549 (649)
Q Consensus 470 ~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~s~~s~~~~~~~~~~~~~ 549 (649)
+..| |++ +.+.. | ..+..+|+.+.++..... ..++-..+-.|.. ..+++|
T Consensus 301 q~~H-pcS----n~ifk-~-----kdKeh~hp~t~is~Pfl~--------------dnle~i~p~aSm~-----aqsapg 350 (421)
T KOG4429|consen 301 QGFH-PCS----NFIFK-I-----KDKEHGHPMTIISIPFLG--------------DNLELIPPCASME-----AQSAPG 350 (421)
T ss_pred CCCC-cch----hhhHh-h-----hccccCCceEEEeecccc--------------ccccCCCcccccc-----ccCCCC
Confidence 3233 222 11111 2 122222221111110000 0000000000000 000011
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCC
Q psy10868 550 TQLPNISLYQREEPDIGTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQT 629 (649)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~ 629 (649)
+|.|+ | +.. .. ....|.|+|.|++...+||...+|+++.+-+.. ..|||.++..
T Consensus 351 Spr~a------~--------------~aa---el-ek~lcdafYSfqarqddel~~e~gditif~Ekk-eeg~~f~rl~- 404 (421)
T KOG4429|consen 351 SPRGA------G--------------EAA---EL-EKILCDAFYSFQARQDDELGGEIGDITIFDEKK-EEGPTFCRLL- 404 (421)
T ss_pred CCCCC------c--------------cHH---HH-HHHHhhhhhccccccccccCCcccceeeecCcc-cCCCceeeec-
Confidence 10000 0 000 00 124799999999999999999999998555544 5699999985
Q ss_pred CCceeccccCceeeccc
Q psy10868 630 DSEEGFVPTSYIQTIAL 646 (649)
Q Consensus 630 g~~~G~vP~syv~~~~~ 646 (649)
| ..|-+|+.||+..+.
T Consensus 405 g-d~~hf~Aa~iEea~~ 420 (421)
T KOG4429|consen 405 G-DFEHFHAAEIEEALF 420 (421)
T ss_pred c-ccCCCcHHHHHHhcc
Confidence 4 789999999987653
No 25
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=99.97 E-value=2.4e-29 Score=253.57 Aligned_cols=221 Identities=20% Similarity=0.219 Sum_probs=186.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc-ccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEE-EDYQYSTCKAFKCVLDEVTDLAGQHEVI 82 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~-~~~~~t~~~aw~~ll~e~~~~A~~H~~l 82 (649)
.||+.|..|+++|+.+|++|..||++|++||.+||++|.||+++|..+... ....+|+..+|..++.+++.+|+.|..+
T Consensus 5 ~G~~~Ll~rlK~~~~~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h~~~ 84 (234)
T cd07652 5 VGLSTLLDRLKQSIASAKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNGLRF 84 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999877431 1234599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhc
Q psy10868 83 AENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHL 162 (649)
Q Consensus 83 ae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~ 162 (649)
+..|. .|+++|..+..++++.||.+.++|.+++
T Consensus 85 a~~L~-~~~~eL~~l~~~~e~~RK~~ke~~~k~~---------------------------------------------- 117 (234)
T cd07652 85 AKALN-EMSDELSSLAKTVEKSRKSIKETGKRAE---------------------------------------------- 117 (234)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHH----------------------------------------------
Confidence 99996 7999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHH--hhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10868 163 QDGDHLMKILRNQVDALERALKNYEKAFRDADKALEH--YKR--ADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQ 238 (649)
Q Consensus 163 ~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k--~~k--a~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~ 238 (649)
+.+.+++..++|||++|+..|+++|+|+.. +.+ ...+.+.+..+.++ .+..+++.|+++|..+
T Consensus 118 -------k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee------~~~~K~~~A~~~Y~~~ 184 (234)
T cd07652 118 -------KKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAAQHED------ELLRKVQAADQDYASK 184 (234)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhHHHhHH------HHHHHHHHHHHHHHHH
Confidence 555666666777777777777777777643 222 11222223333332 4566778899999999
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEK 284 (649)
Q Consensus 239 l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~ 284 (649)
|+.+|..|+.+|...+|.++..||+|+.++...|+..|.+|+....
T Consensus 185 v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~l~~~~~~~~~~~e 230 (234)
T cd07652 185 VNAAQALRQELLSRHRPEAVKDLFDLILEIDAALRLQYQKYALPNE 230 (234)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999999999999999999987643
No 26
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.96 E-value=2.2e-27 Score=236.37 Aligned_cols=231 Identities=16% Similarity=0.234 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--------ccc----cc-----ccHHHHHHHHHHHHHHH
Q psy10868 13 TQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE--------EED----YQ-----YSTCKAFKCVLDEVTDL 75 (649)
Q Consensus 13 ~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~--------~~~----~~-----~t~~~aw~~ll~e~~~~ 75 (649)
......+++++..|+++|++||++||++|.+|+++|..++. +.. +| .++..+|..+|++++.+
T Consensus 3 ~~~e~~~LqDiqqFyreRs~IEkEYS~kL~kL~kky~~Kk~k~ss~lsvgd~p~~tpgsle~~~S~~~~W~~~L~~Te~~ 82 (260)
T cd07677 3 QVEQMTKLQAKHQAECKLLEDEREFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADERADYRSMYTVWKSFLEGTMQV 82 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCccCCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999987741 101 11 15678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q psy10868 76 AGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLE 155 (649)
Q Consensus 76 A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~ 155 (649)
|..|..+|++|.+.+.++++.+....+..||++.+.+.+++
T Consensus 83 A~~~~~~ae~l~~~~a~~~k~~r~~ke~~~Kk~~e~~~~lq--------------------------------------- 123 (260)
T cd07677 83 AQSRINICENYKNLISEPARTVRLYKEQQLKRCVDQLTKIQ--------------------------------------- 123 (260)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 99999999999999999999999999999999999999998
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HhhhhhhcCHHHHHHHHHHHHHHHHHHH---
Q psy10868 156 LSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYK---RADADLELSRAEVEKQRINMAIKSQHCE--- 229 (649)
Q Consensus 156 ~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~---ka~~d~~~sk~eleK~~~k~~~~~~~~~--- 229 (649)
+++..++.+|.|+||+|+..|+.++.++.+.. |.......++..++|+..|+..+..+++
T Consensus 124 --------------~El~~~~~EL~KaKK~Y~~~cq~~e~~ReK~~~e~K~~~s~~qs~~slqK~~~K~~~k~~e~n~k~ 189 (260)
T cd07677 124 --------------AELQETVKDLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKA 189 (260)
T ss_pred --------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 55566667777777777777877777776664 4334455677788888888888888777
Q ss_pred -HhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q psy10868 230 -DTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIK 299 (649)
Q Consensus 230 -~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~ 299 (649)
.|+|+|.++|+.+|+++..||.+++|.++++| +......++++|..++..+...+...+..+..|..
T Consensus 190 ~~ARNeYLl~L~aaNa~~~kYY~~DLp~l~~~~---d~~~~~~~~~~l~~~~~~el~~~~~~~~~f~~~~~ 257 (260)
T cd07677 190 THARNDYLLTLAAANAHQDRYYQTDLVNIMKAL---DGNVYDHLKDYLMAFSRTELETCQAVQNTFQFLLE 257 (260)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhhccHHHHHHHh---cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999977 99999999999999999999998888888777654
No 27
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=99.95 E-value=7.7e-25 Score=213.10 Aligned_cols=226 Identities=15% Similarity=0.246 Sum_probs=200.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-----cccccccHHHHHHHHHHHHHHHHH
Q psy10868 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-----EEDYQYSTCKAFKCVLDEVTDLAG 77 (649)
Q Consensus 3 ~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~-----~~~~~~t~~~aw~~ll~e~~~~A~ 77 (649)
..|.+.|.++.+..+++++.|..||..||..++|||..|..++.+-.+... ..++++.+..+|..|+.+++.+|.
T Consensus 4 ~~~h~all~~qd~ElrllE~mk~~m~~raK~d~eya~~L~~~~~q~~k~~~~~~~~~~~~~s~i~~sW~~il~QTE~isk 83 (237)
T cd07685 4 PQGHAALLRLQDSELRLMEVMKKWMSQRAKSDREYSGMLHHMSAQVEKLDRSQHGALSMLSSPISQSWAVLVSQTETLSQ 83 (237)
T ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccchhhhcccCChHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999998654421 124667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Q psy10868 78 QHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELS 157 (649)
Q Consensus 78 ~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~ 157 (649)
.|..+|+.|+..++..|..++.+.+..||.+...+..+..++.
T Consensus 84 ~~~~~Aeeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~------------------------------------- 126 (237)
T cd07685 84 VLRKHAEDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYT------------------------------------- 126 (237)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999998887772221
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy10868 158 RAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYAN 237 (649)
Q Consensus 158 r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~ 237 (649)
.....+++|+|+.|...|++++.|+.+++++..+ +..+|+..++.+...++..++|+|.+
T Consensus 127 ---------------~~t~~eveK~Kk~Y~~~c~~~e~AR~K~ekas~~-----K~~~K~~EKy~~m~~KL~~~hN~YlL 186 (237)
T cd07685 127 ---------------KTTQQDIEKLKSQYRSLAKDSAQAKRKYQEASKD-----KDRDKAKEKYVKSLWKLYALHNEYVL 186 (237)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2233568899999999999999999999987543 56788888888888888999999999
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 238 QLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKK 285 (649)
Q Consensus 238 ~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~ 285 (649)
.|..+|.++.+||..++|.+++.||+|.+.|+..|+++|..|+.+.+-
T Consensus 187 ~I~~An~~kdkyy~q~lP~LLd~lQ~lnE~~v~~Ln~il~ey~~~t~~ 234 (237)
T cd07685 187 AVRAAQLHHQHHYQRILPGLLESLQSLHEEMVLILKEILQEYFEISSL 234 (237)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998654
No 28
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.94 E-value=8.5e-25 Score=219.86 Aligned_cols=223 Identities=13% Similarity=0.212 Sum_probs=171.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
+..+.|..|+..+..+|++|..||++|+.||++||++|+||++++.+... .+.+ ++..+|..++.+++.+|..|..++
T Consensus 5 ~a~~~l~~Rl~~~~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~~~~~-~e~g-~~~~~w~~i~~e~e~~a~~H~~la 82 (228)
T cd07650 5 EATEILRIRLSQIKLVNTELADWLQERRRLERQYVQGLRKLARRNEPLNK-SLLG-VFQNPWLTIESETEFIAASHGELA 82 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-hhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999975532 2334 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
+.|..+|..||..|....+. ++.+.. ...+. .+ . ++ +++++
T Consensus 83 ~~l~~~ve~~l~~~~~~~~~-~~~l~~-~q~l~--------~~---~-------k~-------~~e~~------------ 123 (228)
T cd07650 83 QRIETDVEEPLRDFATSTEF-MNTLDD-DQNLS--------NL---A-------KE-------LDESQ------------ 123 (228)
T ss_pred HHHHHHHHHHHHHHHhcCHH-HHHhHH-HHHHH--------HH---H-------HH-------HHHHH------------
Confidence 99999999999999877642 222211 00000 00 0 00 00000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
+ ...|+..+..++......+. +..++
T Consensus 124 ------k------------------------------------------~~~Kl~kk~~k~~~~~~~~~------~~~l~ 149 (228)
T cd07650 124 ------K------------------------------------------KWDKLKKKHSKASSKAVSAA------VSDLE 149 (228)
T ss_pred ------H------------------------------------------HHHHHHHHhhhHHHHHHHHH------HHHHH
Confidence 0 01111111111111111111 55555
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHHHHHhcCCCC
Q psy10868 244 EMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVIERYKSGFT 322 (649)
Q Consensus 244 ~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~~~~s~~~ 322 (649)
.. +.-|+..+|.+|+.||++|++|+.+|+++|+.|+++++..+....++++.+...+..||++.||+.|++..++|..
T Consensus 150 ~~-~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~~~~~e~dI~~F~~~~~~g~~ 227 (228)
T cd07650 150 EA-RQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMNQLLEFDTEDEIQRFARKASAGRF 227 (228)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHhCCChHHHHHHHHHHccCCCC
Confidence 55 7889999999999999999999999999999999999999999999999999999999999999999999988864
No 29
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=99.94 E-value=8.6e-25 Score=214.84 Aligned_cols=190 Identities=26% Similarity=0.402 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
||+.|..++++|+.+|++|..||++||+||.+||++|.+|++++.+.... .. +|+..+|..++.+++.+|..|..+|+
T Consensus 1 g~~~l~~~~~~g~~~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~-~~-~t~~~~w~~~~~e~~~~a~~h~~~a~ 78 (191)
T cd07610 1 GFELLEKRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPES-GK-TSLGTSWNSLREETESAATVHEELSE 78 (191)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999876421 11 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccc
Q psy10868 85 NLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQD 164 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~ 164 (649)
+|...|.+|+..+...++..||++..++.++.+.+
T Consensus 79 ~l~~~i~~~~~~~~~~~~~~rk~~~~~~~~~~k~~--------------------------------------------- 113 (191)
T cd07610 79 KLSQLIREPLEKVKEDKEQARKKELAEGEKLKKKL--------------------------------------------- 113 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999988998888777666222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy10868 165 GDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANE 244 (649)
Q Consensus 165 ~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~ 244 (649)
...+..+++ +++++|..++.++|.
T Consensus 114 ----------------------~~~~~~~~k----------------------------------k~~~~y~~~~~~~~~ 137 (191)
T cd07610 114 ----------------------QELWAKLAK----------------------------------KADEEYREQVEKLNP 137 (191)
T ss_pred ----------------------HHHHHHHHH----------------------------------hhHHHHHHHHHHHHH
Confidence 111111110 578899999999999
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q psy10868 245 MQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGII 298 (649)
Q Consensus 245 ~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~ 298 (649)
.+..||...+|.+ ..+|++++.|+.+|+++|..|+.+++.+++.+..+++.|.
T Consensus 138 ~~~~~~~~~~~~~-~~~q~~~e~r~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~ 190 (191)
T cd07610 138 AQSEYEEEKLNKI-QAEQEREEERLEILKDNLKNYINAIKEIPQKIQQELEQSI 190 (191)
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhccc
Confidence 9888888666665 5699999999999999999999999999999999988764
No 30
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=99.94 E-value=7.1e-24 Score=207.86 Aligned_cols=234 Identities=18% Similarity=0.249 Sum_probs=188.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--------cccccccHHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE--------EEDYQYSTCKAFKCVLDEVT 73 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~--------~~~~~~t~~~aw~~ll~e~~ 73 (649)
|.||+.+|..+++.-+.++.||.+||++||+||.|||++|.|||++|..++. ++.+..|...+|..|++++.
T Consensus 3 l~eQlkcld~~~e~~i~~LqDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~ 82 (253)
T cd07684 3 LVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRTSREHQFKKDQQLLSPVNCWYLVLEQTR 82 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCccCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999987731 22234577999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 74 DLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADAD 153 (649)
Q Consensus 74 ~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~ 153 (649)
.+|..|..+++.+...++..|..+..+.-+.-|++.+-+.+++.+|....++|..+.|.|+.+..+...|..++..|+..
T Consensus 83 ~iskdh~~LSd~y~~~~~~rl~~~~ed~~Ri~kkskEi~~~~~eeLlkV~~EL~t~mKTY~~y~~e~~~ae~KL~eaE~q 162 (253)
T cd07684 83 RESRDHATLNDIFNNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQ 162 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887622
Q ss_pred HhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHH
Q psy10868 154 LELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKT 233 (649)
Q Consensus 154 l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~ 233 (649)
.+..+-+. . .....+.+ ++...+ . +.... .....++|...++.....++.+|+|
T Consensus 163 ~~k~~~k~--------~---~~~~~~~r----~e~~~~--~--rss~k-------K~~r~~eKrqaK~~e~klK~~~arN 216 (253)
T cd07684 163 EEKQFNKS--------G---DISSNLLR----HEERPQ--R--RSSVK-------KIEKMKEKRQAKYSENKLKCTKARN 216 (253)
T ss_pred HHHHhccc--------c---chhhhhcc----ccchhh--h--HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110000 0 00000000 000000 0 00000 0113457888889999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q psy10868 234 EYANQLQRANEMQRQHYTQAMPEVFAQL 261 (649)
Q Consensus 234 eY~~~l~~~N~~q~~~y~~~mp~i~~~l 261 (649)
||..+|+++|++++.||..++|.++++|
T Consensus 217 eYll~l~a~Na~~~~yy~~dl~~l~~c~ 244 (253)
T cd07684 217 DYLLNLAATNAAVSKYYIHDVSDLIDCC 244 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999987
No 31
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.93 E-value=2.5e-23 Score=204.22 Aligned_cols=233 Identities=18% Similarity=0.244 Sum_probs=189.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--------cccccccHHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE--------EEDYQYSTCKAFKCVLDEVT 73 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~--------~~~~~~t~~~aw~~ll~e~~ 73 (649)
|.||+.+|..+++.-++++.||.+||++||+||.|||++|.|||++|..++. ++.+..|...+|..||+++.
T Consensus 3 l~eQlkcld~q~e~~i~lLqDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~ 82 (263)
T cd07682 3 LVEQLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQVK 82 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999988741 22234477899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 74 DLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADAD 153 (649)
Q Consensus 74 ~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~ 153 (649)
.+|..|..+++.+...++..|..+..+.-+.-|++.+-+.+++.+|....++|..+.|.|+.+..+...|..++..|+..
T Consensus 83 ~~Skdh~~LSd~y~~~~~~rl~~~~ed~~Ri~KksKEi~~q~~eeLlkV~~ELqt~mktYh~y~~e~~~ae~Klk~aE~q 162 (263)
T cd07682 83 RESRDHATLSDIYLNNIIPRFVQISEDSGRLFKKSKEVGLQLQEDLMKVLNELYTVMKTYHMYNADSISAQSKLKEAEKQ 162 (263)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888622
Q ss_pred Hhhh--hhhhcccchhHHHHHHHHHHHHHHHH---------HHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHH
Q psy10868 154 LELS--RAEHLQDGDHLMKILRNQVDALERAL---------KNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMA 222 (649)
Q Consensus 154 l~~~--r~~~~~~~~~~~k~l~~~~~~l~KaK---------k~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~ 222 (649)
.+.. |... ....++ -.++.. ...+ .........++|...++.
T Consensus 163 ~ek~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~--~~rr---------s~~kk~~r~~ekrq~Ky~ 215 (263)
T cd07682 163 EEKQMSRSVR----------------QEDRQTPRSPDSTTNIRIEEK--HVRR---------SSVKKIEKMKEKRQAKYT 215 (263)
T ss_pred HHHHhccccc----------------ccccccccccccccccccccc--hhhH---------HHHHHHHHHHHHHHHHHH
Confidence 1110 0000 000000 000000 0000 000011235677888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q psy10868 223 IKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQL 261 (649)
Q Consensus 223 ~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~l 261 (649)
....+|.+|+|||.++|.++|+..+.||..++|.++++|
T Consensus 216 e~kLK~~KARNeYlL~L~a~Na~~~kYy~~dlsdLiDC~ 254 (263)
T cd07682 216 ENKLKAIKARNEYLLALEATNASVFKYYIHDLSDLIDCC 254 (263)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 899999999999999999999999999999999999987
No 32
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=99.93 E-value=3e-23 Score=203.87 Aligned_cols=233 Identities=18% Similarity=0.211 Sum_probs=186.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc----cc--c---ccccHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE----EE--D---YQYSTCKAFKCVLDEV 72 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~----~~--~---~~~t~~~aw~~ll~e~ 72 (649)
|.||+.+|..+++.-+.++.||.+||++||+||.|||++|.|||++|..++. .+ . ...+...+|..|++++
T Consensus 3 l~eQlkcld~~~e~~~~lLqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~~~S~~~~W~~lL~qT 82 (253)
T cd07683 3 LVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLNQV 82 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcchhhHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999988741 11 1 1246789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 73 TDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADA 152 (649)
Q Consensus 73 ~~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~ 152 (649)
..+|..|..+++.+.+.++..|..+..+.-+.-|++.+-+.+++.+|....++|..+.|.|+.+..|...+..++..|+.
T Consensus 83 ~~~sk~h~~LSd~y~~~~~~r~~~~~ed~~ri~kkskEi~~~~~eeLlkV~~EL~t~mKtY~~y~~e~~~ae~Klk~ae~ 162 (253)
T cd07683 83 RRESKDHATLSDIYLNNVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYHTESISAESKLKEAEK 162 (253)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877652
Q ss_pred hHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhH
Q psy10868 153 DLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTK 232 (649)
Q Consensus 153 ~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak 232 (649)
..+.. +.|++..... .+--+..+.+ . ......+.++|...++.....++.+|+
T Consensus 163 q~ek~---------------------~~ks~~~~~~-~~~~~~~~r~---~--~~kk~~k~~eKrqaK~~e~klK~tkAR 215 (253)
T cd07683 163 QEEKQ---------------------IGRSGDPVFH-IRLEDRHQRR---S--SVKKIEKMKEKRQAKYSENKLKSIKAR 215 (253)
T ss_pred HHHHH---------------------hccccccccc-cccccchhhh---H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 0000000000 0000000000 0 000012345678888888999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q psy10868 233 TEYANQLQRANEMQRQHYTQAMPEVFAQL 261 (649)
Q Consensus 233 ~eY~~~l~~~N~~q~~~y~~~mp~i~~~l 261 (649)
|||.++|+++|++.+.||.+++|.++++|
T Consensus 216 NEYLL~L~AaNA~~~~Yy~~Dl~dLidc~ 244 (253)
T cd07683 216 NEYLLTLEATNASVFKYYIHDLSDLIDCC 244 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999987
No 33
>KOG2398|consensus
Probab=99.86 E-value=1.4e-19 Score=202.55 Aligned_cols=251 Identities=19% Similarity=0.317 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 14 QKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKE 93 (649)
Q Consensus 14 ~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~ 93 (649)
..|...|++|..|++||+.||++|++.|.+|+++..... ..+ ++...|..+...++.+|..|..++..|+..+...
T Consensus 2 ~~g~~~~~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~---~~g-s~~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~ 77 (611)
T KOG2398|consen 2 KTGLRSTKELADFVRERASIEEDYAKRMGKLAAKAKSYT---ENG-SFAESWLVMRTSTEAMAKSHLELSRELQDLIKDV 77 (611)
T ss_pred CcccchhhhHHHHHHHHHhhhHHHHHHHHHHhhccccCC---CCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999998775432 223 8999999999999999999999999998766555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHH
Q psy10868 94 VTIFVKDFKEERKKHLQDG-ARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKIL 172 (649)
Q Consensus 94 L~~~~~e~~~~rK~~~~~~-~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l 172 (649)
.+.+. ++.+.+|++...+ .++.... ..++
T Consensus 78 ~k~~~-~~~k~~k~~~~~~v~~~~~~q---------~~~~---------------------------------------- 107 (611)
T KOG2398|consen 78 AKYYA-EQLKTRKKSKEEGVEKLKQDQ---------SKKK---------------------------------------- 107 (611)
T ss_pred HHHHH-HHHHHHHHHHHhhHHHHHHHh---------hHHH----------------------------------------
Confidence 44444 4445555555443 2222000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHh
Q psy10868 173 RNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQ 252 (649)
Q Consensus 173 ~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~ 252 (649)
.....++.+++++|...|.+.+.... ..|.+.++.++...+.+++.+|+..++.++.. +..|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~e~e~~~~---------------~~k~~~~~~k~~~~i~~~~~~y~~~~~~~~~v-r~~w~~ 171 (611)
T KOG2398|consen 108 AKDTYEVLCAKSNYLHRCQEKESLKE---------------KEKRKKELAKAELKIKEAREEYRSLVAKLEKV-RKDWEQ 171 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc---------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 00111233344455555555554322 23345566667777789999999999999999 899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHHHHHhcCCCCCCCCcccccC
Q psy10868 253 AMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVIERYKSGFTPPGDIPFEDL 332 (649)
Q Consensus 253 ~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~~~~s~~~~P~~~~FE~~ 332 (649)
.|-.+|..||.+|+.|+.+|+..|+.|++.....|..+.++++.++..++.+.++.|+..||+..++|..+|+.+.|++|
T Consensus 172 ~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le~~sv~~~i~~fv~~k~TGte~P~~i~~e~~ 251 (611)
T KOG2398|consen 172 EMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLTLESCSVDEDITKFVEAKGTGTEKPEPIEFENY 251 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhccCCHHHHHHHHhhccCCCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy10868 333 SR 334 (649)
Q Consensus 333 ~~ 334 (649)
..
T Consensus 252 ~~ 253 (611)
T KOG2398|consen 252 YS 253 (611)
T ss_pred cc
Confidence 87
No 34
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=99.62 E-value=1.9e-15 Score=130.14 Aligned_cols=86 Identities=30% Similarity=0.506 Sum_probs=77.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q psy10868 1 VFQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHE 80 (649)
Q Consensus 1 ~L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~ 80 (649)
.+||||+.|..++++|+.+|++|+.||++|+.||.+||++|.||++++.+........+|+..+|..++++++.+|..|.
T Consensus 6 ~~~~g~~~l~~~~~~~~~~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~a~~h~ 85 (91)
T PF00611_consen 6 DLWDGFEVLFKRLKQGIKLLEELASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEETEQIAEQHS 85 (91)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999986642211235899999999999999999999
Q ss_pred HHHHHH
Q psy10868 81 VIAENL 86 (649)
Q Consensus 81 ~lae~L 86 (649)
.+|++|
T Consensus 86 ~~a~~L 91 (91)
T PF00611_consen 86 KLAENL 91 (91)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999886
No 35
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=99.55 E-value=2.2e-14 Score=122.57 Aligned_cols=80 Identities=34% Similarity=0.520 Sum_probs=70.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEV 81 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~ 81 (649)
+++||+.|..++++|+.+|++|..||++||+||.+||++|.+|++++.....+....+|+..+|..++.+++.+|..|..
T Consensus 7 ~~~g~~~L~~~~~~~~~~~~~~~~f~~~Ra~iE~eYak~L~kL~~~~~~~~~~~~~~~s~~~aw~~~~~e~~~~a~~h~~ 86 (87)
T smart00055 7 LDDGFEALLSRLKNGLRLLEDLKKFIRERAKIEEEYAKKLQKLSKKLRAVRDTESEYGSLSKSWEVLLSETDALAKQHLQ 86 (87)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999986443322222348999999999999999999975
No 36
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.37 E-value=4.8e-13 Score=101.27 Aligned_cols=49 Identities=31% Similarity=0.678 Sum_probs=43.0
Q ss_pred EcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCcee
Q psy10868 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642 (649)
Q Consensus 591 alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~ 642 (649)
|||||.+..++||+|++||+|.|++.. ++|||.+++ .| +.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~-~~~W~~g~~-~g-~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKS-DDGWWYGRN-TG-RTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEES-STSEEEEEE-TT-EEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeC-CCCEEEEEE-CC-EEEEECHHhCC
Confidence 799999999999999999999999875 569999997 55 99999999996
No 37
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.23 E-value=8e-12 Score=94.29 Aligned_cols=48 Identities=33% Similarity=0.774 Sum_probs=43.1
Q ss_pred EEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceecccc
Q psy10868 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPT 638 (649)
Q Consensus 590 ~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~ 638 (649)
+|+|||.+..++||+|.+||+|.|++..+ +|||.|++..++++||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSD-DGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESS-SSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecC-CCEEEEEECCCCcEEEeeC
Confidence 69999999999999999999999999875 4999999987669999996
No 38
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.15 E-value=3.8e-11 Score=93.33 Aligned_cols=54 Identities=24% Similarity=0.583 Sum_probs=46.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEE-eecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYII-ELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~-~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
.|+|++||.+..+++|+|++||+|.|+ +.++ +|||.++. .| +.||||++||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~-~~ww~~~~-~g-~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDD-DGWWLGEN-NG-RRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECS-TSEEEEEE-TT-EEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecC-CCEEEEEE-CC-cEEEEcHHHEEEC
Confidence 479999999999999999999999999 6553 59999999 55 9999999999863
No 39
>KOG1029|consensus
Probab=99.15 E-value=8.5e-07 Score=98.54 Aligned_cols=60 Identities=28% Similarity=0.553 Sum_probs=51.3
Q ss_pred CccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCC-CCcEEEEeCCCCceeccccCceeeccc
Q psy10868 585 PLGTAKALYPFEATSEGSIPMYDGEELYIIELDQG-DGWTRVRRQTDSEEGFVPTSYIQTIAL 646 (649)
Q Consensus 585 ~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~-~gW~~v~~~~g~~~G~vP~syv~~~~~ 646 (649)
..-.|+|||+|++.+.+||+|.+||+|.|.+.-.+ +||..+.. .| ..||||.+||+-++.
T Consensus 692 ~~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel-~g-ktGWFPenyvEki~~ 752 (1118)
T KOG1029|consen 692 DTVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGEL-RG-KTGWFPENYVEKIPA 752 (1118)
T ss_pred ceEEEeeecccccCCcccccccCCCEEEEehhccCCccccccee-cc-ccCcCcHHHHhhccc
Confidence 35689999999999999999999999988876543 58988887 55 899999999996654
No 40
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.01 E-value=5.9e-10 Score=86.55 Aligned_cols=55 Identities=25% Similarity=0.606 Sum_probs=49.8
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceee
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
..++|+|||.+..+++|+|.+||.|.|++.+ .+|||.++...+ +.|+||++|++.
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~-~~~w~~~~~~~~-~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKS-DDGWWKGRLGRG-KEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcC-CCCeEEEEeCCC-CEEEEchHHEEE
Confidence 4789999999999999999999999999976 469999998765 999999999975
No 41
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.99 E-value=7.2e-10 Score=84.90 Aligned_cols=52 Identities=25% Similarity=0.618 Sum_probs=47.4
Q ss_pred EEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCcee
Q psy10868 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642 (649)
Q Consensus 589 ~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~ 642 (649)
++|+|+|.+..+++|+|.+||.|.|++.. ++|||.++...+ +.|+||++|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~-~~~w~~~~~~~~-~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKS-DDGWWEGRLLGG-KRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcC-CCCeEEEEECCC-CEEEEccccCc
Confidence 68999999999999999999999999974 469999999766 89999999986
No 42
>KOG1118|consensus
Probab=98.98 E-value=1.3e-08 Score=102.17 Aligned_cols=55 Identities=24% Similarity=0.606 Sum_probs=49.9
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
..|+|||||++.+++||-|++||+|.|++.-+ .+||-++.. | ..|+||.+||+++
T Consensus 307 p~cralYdFepenEgEL~fkeGDlI~l~~QId-enWyeG~~~-g-~sG~FPvnYv~vl 361 (366)
T KOG1118|consen 307 PCCRALYDFEPENEGELDFKEGDLITLTNQID-ENWYEGEKH-G-ESGMFPVNYVEVL 361 (366)
T ss_pred hhheeeeccCCCCCCccCcccCceeeehhhcC-cchhhheec-C-ccCccccceeEEe
Confidence 47999999999999999999999999999874 599999984 4 8999999999864
No 43
>KOG0162|consensus
Probab=98.89 E-value=3.1e-09 Score=116.79 Aligned_cols=54 Identities=22% Similarity=0.494 Sum_probs=49.1
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceee
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
+.|.|+|||.|+..+||+|++||+|.|+.+| ..|||.++. +| ++||||.+||+.
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~ed-pSGWw~gk~-~~-keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMRED-PSGWWLGKL-NG-KEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccC-CCcchhhcc-CC-cccccccccccc
Confidence 5799999999999999999999999999977 569999995 44 999999999975
No 44
>KOG2199|consensus
Probab=98.89 E-value=4.4e-10 Score=116.32 Aligned_cols=58 Identities=17% Similarity=0.450 Sum_probs=51.3
Q ss_pred CccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecc
Q psy10868 585 PLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 585 ~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
+...++|||||++..++||+|++||+|+|++.. ..+||+++... ..|+||++||....
T Consensus 214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s-~~~WWKG~~~~--~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDS-DPNWWKGENHR--GIGLFPSNFVTADL 271 (462)
T ss_pred cchhhhhhhcccccCCCccceecCcEEEEcccC-CcchhccccCC--cccccchhhhhhhh
Confidence 456889999999999999999999999999966 45899999864 58999999998665
No 45
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=98.77 E-value=2.7e-08 Score=81.72 Aligned_cols=70 Identities=27% Similarity=0.367 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTY 460 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~ 460 (649)
+++.+++.+|++|+.+|+++.+-++|+++|..+|..+|..|++.+++.+|.+..++|+.|+.++.+++..
T Consensus 2 ~~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 2 QVRSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999999999999999999999999999999999999753
No 46
>KOG4226|consensus
Probab=98.68 E-value=9.3e-09 Score=101.47 Aligned_cols=60 Identities=25% Similarity=0.561 Sum_probs=53.6
Q ss_pred CccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecC-CCCcEEEEeCCCCceeccccCceeecc
Q psy10868 585 PLGTAKALYPFEATSEGSIPMYDGEELYIIELDQ-GDGWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 585 ~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~-~~gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
.+-.++|||+|.+.++.||+|.+||.+.|++... +++||++|+..| +.|+||.+||.+..
T Consensus 190 vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G-~vGLVPrNYv~vl~ 250 (379)
T KOG4226|consen 190 VLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARG-QVGLVPRNYVVVLS 250 (379)
T ss_pred EEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCC-ccceeecceEEEec
Confidence 4567899999999999999999999999999865 458999999887 99999999998753
No 47
>KOG1029|consensus
Probab=98.64 E-value=1.6e-08 Score=111.83 Aligned_cols=57 Identities=23% Similarity=0.574 Sum_probs=50.7
Q ss_pred CCCccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCcee
Q psy10868 583 LPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642 (649)
Q Consensus 583 ~~~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~ 642 (649)
.+++..++|+|||+|+++|||+|++||+|.|++.|+ +.||++..+ | ..|+||+|||.
T Consensus 1050 ~~~v~qviamYdY~AqndDELsF~kgdiI~Vlnkde-peWW~Ge~n-g-~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1050 TRPVCQVIAMYDYEAQNDDELSFKKGDIINVLNKDE-PEWWSGERN-G-KSGLFPSNYVQ 1106 (1118)
T ss_pred CCccceeEEeeccccCCcccccccCCCEEEecCCCC-hhhhccccc-C-ccccCcccccc
Confidence 345677899999999999999999999999999885 589999984 5 89999999994
No 48
>KOG0515|consensus
Probab=98.63 E-value=1.3e-08 Score=108.57 Aligned_cols=59 Identities=32% Similarity=0.569 Sum_probs=50.6
Q ss_pred CccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCC--CcEEEEeCCCCceeccccCceeecc
Q psy10868 585 PLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD--GWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 585 ~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~--gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
..|.+-|||||++..++||+|++||.|+||+.++.. .||.++. +| ++||||.+|+-+.+
T Consensus 682 N~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~l-ng-~eGyVPRnylgLyP 742 (752)
T KOG0515|consen 682 NKGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARL-NG-EEGYVPRNYLGLYP 742 (752)
T ss_pred ccceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhh-cC-cccccchhhhhcCc
Confidence 446789999999999999999999999999986532 7999995 55 99999999997654
No 49
>KOG2070|consensus
Probab=98.61 E-value=1.9e-08 Score=106.62 Aligned_cols=55 Identities=18% Similarity=0.594 Sum_probs=50.3
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecc
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
.++|-|.|.+++.|||+|.+||+|+|.+..+| |||-+.. +| +.||||++||..+.
T Consensus 19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeG-GWWEGTl-ng-~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEG-GWWEGTL-NG-RTGWFPSNYVREIK 73 (661)
T ss_pred EEEEEeecccCCCceeccccCCEEEEEEeccC-cceeccc-cC-ccCccchHHHHHHh
Confidence 67999999999999999999999999999887 9999998 45 99999999997654
No 50
>KOG4226|consensus
Probab=98.53 E-value=1.4e-07 Score=93.39 Aligned_cols=54 Identities=22% Similarity=0.506 Sum_probs=48.6
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
.+.+-|.|.+..++||++.+|..|+|++.. .||||++.- +| +.||||++||...
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKs-sDGWWrG~~-ng-~VGWFPSNYv~E~ 162 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEKS-SDGWWRGSY-NG-QVGWFPSNYVTEE 162 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEec-cCcceeccc-CC-eeccccccceehh
Confidence 478899999999999999999999999987 579999998 44 8999999999753
No 51
>KOG4348|consensus
Probab=98.52 E-value=5.2e-08 Score=101.76 Aligned_cols=59 Identities=17% Similarity=0.492 Sum_probs=53.2
Q ss_pred CccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCC-CcEEEEeCCCCceeccccCceeecc
Q psy10868 585 PLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 585 ~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~-gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
...+|+++|.|++++++||+|++||+|.+|..+.|| |||.+.. +| +.|.||-|||+++.
T Consensus 260 tKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGEL-nG-k~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 260 TKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGEL-NG-KKGVFPDNFVELVQ 319 (627)
T ss_pred hhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeee-cC-ccccCCchhhhhcC
Confidence 446899999999999999999999999999988777 9999998 55 99999999998654
No 52
>KOG4225|consensus
Probab=98.49 E-value=2.2e-07 Score=97.76 Aligned_cols=58 Identities=26% Similarity=0.554 Sum_probs=51.4
Q ss_pred ccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeeccc
Q psy10868 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIAL 646 (649)
Q Consensus 586 ~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~~ 646 (649)
...++|||+|+++...||+|.+||+|+|+.+-|+ .|.-+.. +| +.|+||.|||+++..
T Consensus 230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~-nWyeGEh-hG-r~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQ-NWYEGEH-HG-RVGIFPASYVEILTP 287 (489)
T ss_pred cchhhheeccccCCccccccCCCCEEEEEeeccC-ceeeeee-cc-eecceechheeecCc
Confidence 3458999999999999999999999999998754 8999998 45 999999999998754
No 53
>KOG3771|consensus
Probab=98.48 E-value=0.0006 Score=73.49 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=44.4
Q ss_pred CCccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCcee
Q psy10868 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642 (649)
Q Consensus 584 ~~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~ 642 (649)
+++..++++|||++...++|+|..||+|.|+..++.+.||-++.. | ..|-.|..|+.
T Consensus 398 ~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~m-g-~ke~~~~~~~~ 454 (460)
T KOG3771|consen 398 GFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLM-G-VKESDWNGLFP 454 (460)
T ss_pred CCccceeccccccccccccccccCCCEEEEecCCCccchhhHHHh-h-hccccccccee
Confidence 455678999999999999999999999999998766678888774 2 33333455554
No 54
>KOG2996|consensus
Probab=98.45 E-value=1.1e-07 Score=102.60 Aligned_cols=58 Identities=24% Similarity=0.453 Sum_probs=51.0
Q ss_pred CccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCC-CCcEEEEeCCCCceeccccCceeec
Q psy10868 585 PLGTAKALYPFEATSEGSIPMYDGEELYIIELDQG-DGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 585 ~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~-~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
.++.++|-|||-+..-.|||+++||+|.|+..-.+ .|||++.. +| +.||||++||+..
T Consensus 804 ~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGev-ng-rvGwFPstYVee~ 862 (865)
T KOG2996|consen 804 VVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEV-NG-RVGWFPSTYVEED 862 (865)
T ss_pred eeeeeeeccccCCCchhhcccccCCEEEEehhccccCceeccee-cC-ccccccccccccc
Confidence 56789999999999999999999999999987544 49999998 44 9999999999864
No 55
>KOG3875|consensus
Probab=98.32 E-value=9.3e-08 Score=96.37 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=53.2
Q ss_pred ccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCC----CcEEEEeCCCCceeccccCceeeccc
Q psy10868 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD----GWTRVRRQTDSEEGFVPTSYIQTIAL 646 (649)
Q Consensus 586 ~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~----gW~~v~~~~g~~~G~vP~syv~~~~~ 646 (649)
...|+|+|||.+.++.||++++||+|.|.-+++.. .||.++..+|+..|+||.+||+++..
T Consensus 268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 35799999999999999999999999998877532 49999988777899999999998754
No 56
>KOG4792|consensus
Probab=98.27 E-value=2.7e-07 Score=89.08 Aligned_cols=55 Identities=25% Similarity=0.598 Sum_probs=49.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
.++|+|||.+..+.+|+|++||+|.|+++++ +.||-+|+..| ..|.||..||+..
T Consensus 126 ~vr~~fdF~G~deeDLPFkkGeiL~I~~K~e-eqWW~Arns~G-k~GmIPvpYVe~~ 180 (293)
T KOG4792|consen 126 YVRALFDFNGNDEEDLPFKKGEILRIRDKPE-EQWWNARNSEG-KRGMIPVPYVEKY 180 (293)
T ss_pred heeeeeccCCCccccCCcccCcEEEEecCcH-HHhhhhhccCC-cccceechHHHhh
Confidence 5678999999999999999999999999874 58999999887 9999999999853
No 57
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=98.24 E-value=0.0013 Score=63.42 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 6 YDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAEN 85 (649)
Q Consensus 6 f~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~ 85 (649)
|+.+...++.-++.++.+...+.+.......++..|.+|+..+.... ...+..+|..+...+..++..+..+...
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 76 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLS-----NTDLGEALEKFGKIQKELEEFRDQLEQK 76 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999999999999999999999998775431 1147789999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy10868 86 LQVFIIKEVTIFVK 99 (649)
Q Consensus 86 L~~~v~~~L~~~~~ 99 (649)
+...|+.||..+.+
T Consensus 77 ~~~~v~~pL~~~~~ 90 (194)
T cd07307 77 LENKVIEPLKEYLK 90 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999984
No 58
>KOG1264|consensus
Probab=98.14 E-value=9.7e-07 Score=98.59 Aligned_cols=59 Identities=24% Similarity=0.472 Sum_probs=51.9
Q ss_pred ccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeeccc
Q psy10868 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIAL 646 (649)
Q Consensus 586 ~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~~ 646 (649)
-..|+|||||.|..++||||-+|-+|++++++.| |||++.-. |...||+|++||+.+..
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg-~wWrGdYG-g~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEG-GWWRGDYG-GRIQQWFPSNYVEEIST 832 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCC-ceeecccc-cceeeeccHHHhhhhcc
Confidence 4579999999999999999999999999998876 89999974 33679999999997643
No 59
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.14 E-value=0.0016 Score=64.80 Aligned_cols=198 Identities=13% Similarity=0.199 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEME---YAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHE 80 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~e---YAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~ 80 (649)
|.++.|.+|+. ++|..+..+.+.|+.+=.. +||.+.-|+. . + ..++..+...+.+.+..+...|.
T Consensus 11 ~~i~~lE~hl~---~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~----~----E-~~~L~~~L~~lae~~~~i~d~~q 78 (211)
T cd07598 11 ERITNVEKHFG---ELCQDFAAYTRKTARLRDKGDELAKSINAYAD----T----E-NPSLKQGLKNFAECLAALQDYRQ 78 (211)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh----c----c-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 5666777777777766543 3444444332 1 2 23799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q psy10868 81 VIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAE 160 (649)
Q Consensus 81 ~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~ 160 (649)
.-++.|...+++||+.+..-.. .+.....
T Consensus 79 ~qv~~l~~~v~epLk~Y~~l~k----~~k~~~K----------------------------------------------- 107 (211)
T cd07598 79 AEVERLEAKVVQPLALYGTICK----HARDDLK----------------------------------------------- 107 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-----------------------------------------------
Confidence 9999999999999998875442 2222111
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10868 161 HLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQ 240 (649)
Q Consensus 161 ~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~ 240 (649)
.|......+-+.+. .+++.+ ..+..+ +. .+.....++..++.+|
T Consensus 108 ----------~~~~ar~~~~~~~~-------~leklk-----~~~~~d--~~-------~i~eaE~~l~~a~~d~----- 151 (211)
T cd07598 108 ----------NTFTARNKELKQLK-------QLEKLR-----QKNPSD--RQ-------IISQAESELQKASVDA----- 151 (211)
T ss_pred ----------HHHHHHHHHHHHHH-------HHHHHH-----hcCCch--hh-------HHHHHHHHHHHHHHHH-----
Confidence 01111111111000 011110 000000 01 1112233333444343
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHH
Q psy10868 241 RANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDS 310 (649)
Q Consensus 241 ~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~ 310 (649)
+..-..+-..+..++.+|+..|+.+|..|...+..........+......+..||.+.|+
T Consensus 152 ----------~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~~~~~d~ 211 (211)
T cd07598 152 ----------NRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNIDEEEDL 211 (211)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 333344555666779999999999999999999999888888999999999999998884
No 60
>KOG3655|consensus
Probab=98.04 E-value=1.8e-06 Score=92.29 Aligned_cols=55 Identities=27% Similarity=0.578 Sum_probs=50.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
.++|+|||+|..+.||+|.+++.|.+|+.-+ +|||.++..+| +.|+||++||+++
T Consensus 429 ~A~A~~dyqAAddtEisf~p~d~it~Id~vd-egww~g~~pdG-~~glfPaNyV~li 483 (484)
T KOG3655|consen 429 TARALYDYQAADDTEISFDPPDAITLIDQVD-EGWWTGQGPDG-EVGLFPANYVELI 483 (484)
T ss_pred CccccccccccCCcccccCCccccccccccC-CccccccCCCC-CcCcccccccccC
Confidence 5799999999999999999999999999874 69999999887 9999999999875
No 61
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.99 E-value=0.0029 Score=64.49 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 60 STCKAFKCVLDEVTDLAGQHE-VIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYR 138 (649)
Q Consensus 60 t~~~aw~~ll~e~~~~A~~H~-~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~ 138 (649)
++...|..+..+.+.+|..+. .++.-| ...+.+++..++.+-..-+++...+. ..+.+|+|+|+.|+++|+
T Consensus 70 ~~L~~~~~~a~q~e~~a~~l~~~v~~~l-~~~~~~l~~~rk~~~~~~~klqk~l~-------~~~~~leksKk~Y~~ack 141 (252)
T cd07675 70 NILNELNDYAGQREVVAEEMGHRVYGEL-MRYSHDLKGERKMHLQEGRKAQQYLD-------MCWKQMDNSKKKFERECR 141 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 678899999999999999884 455555 34456677766666444455555553 346789999999999999
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy10868 139 ESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKR 202 (649)
Q Consensus 139 e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~k 202 (649)
+.+.|+.+|.+|+++.+.++.. ++|++.++......++.++..|..
T Consensus 142 e~E~A~~k~~ka~~d~~~tk~~------------------~eK~k~~~~~~~q~~e~aKn~Y~~ 187 (252)
T cd07675 142 EAEKAQQSYERLDNDTNATKSD------------------VEKAKQQLNLRTHMADESKNEYAA 187 (252)
T ss_pred HHHHHHHHHHhcccCcccCHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999776666643 467777777777777766665553
No 62
>KOG4348|consensus
Probab=97.96 E-value=1.8e-06 Score=90.49 Aligned_cols=59 Identities=12% Similarity=0.427 Sum_probs=52.3
Q ss_pred CCccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecc
Q psy10868 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 584 ~~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
+....|+++|.|-+++++||.++.||+|.|+.+- .+|||.+... | ..|+||+|||....
T Consensus 98 ~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eV-EeGWw~G~Ln-g-k~GmFPsNFVkel~ 156 (627)
T KOG4348|consen 98 PQARICVVTFAYSPQNDDELELKVGDIIELISEV-EEGWWKGKLN-G-KVGMFPSNFVKELP 156 (627)
T ss_pred ccceeEEEEEeecCCCCceeeeeeccHHHhhhHh-hhhhhhceec-C-cccccchhhceecC
Confidence 4557899999999999999999999999999965 4699999985 5 89999999998764
No 63
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=97.92 E-value=0.02 Score=56.64 Aligned_cols=95 Identities=11% Similarity=0.142 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
..+.+..+++.=++.|+.+++-.+.=+.....++..|+.+.-.+.......+ ...+..+...+..-+..+...|..+.+
T Consensus 10 ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDD-e~~i~~~L~kF~~~l~ei~~~r~~L~~ 88 (207)
T cd07602 10 ELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDD-EIEIAESLKEFGRLIETVEDERDRMLE 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999999999999877654321112 225778888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKD 100 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e 100 (649)
..+..++.||..|.++
T Consensus 89 q~~~~l~~pL~~F~k~ 104 (207)
T cd07602 89 NAEEQLIEPLEKFRKE 104 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999764
No 64
>KOG4278|consensus
Probab=97.87 E-value=8.9e-06 Score=89.51 Aligned_cols=56 Identities=27% Similarity=0.656 Sum_probs=48.8
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
...+|||||.+.+++.|++.+||.|.|+.......|.-+|..+| +||||++||.+.
T Consensus 91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNG--qGWVPSNyItPv 146 (1157)
T KOG4278|consen 91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNG--QGWVPSNYITPV 146 (1157)
T ss_pred ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCC--Cccccccccccc
Confidence 36899999999999999999999999999876546889998665 499999999754
No 65
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=97.85 E-value=0.0093 Score=58.91 Aligned_cols=51 Identities=12% Similarity=0.304 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHH
Q psy10868 261 LQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSA 311 (649)
Q Consensus 261 lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~ 311 (649)
+-.+|.+++..|+.+|..|+.++..++..--..+..-.+.++.||++.|++
T Consensus 169 i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~a~q~i~~id~e~DLe 219 (219)
T PF06730_consen 169 IDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTAAYQDIQNIDEEEDLE 219 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhccC
Confidence 444599999999999999999999988777777777788899999999973
No 66
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=97.79 E-value=0.045 Score=54.08 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
..+...+.++.=++.|+.|++-.+.=+.....+|.+|.-|.-.+.......+ ...+..++..+..-+..+..+|..+..
T Consensus 10 ~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dd-e~~i~~sl~ef~~~~~el~d~r~~L~~ 88 (207)
T cd07635 10 ELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDD-ERCIDASLQEFSNFLKNLEEQREIMAL 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888999999999999999999999987654422112 224568888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKD 100 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e 100 (649)
+++..++.||..|.++
T Consensus 89 ~~~~~l~~pL~~F~ke 104 (207)
T cd07635 89 NVTETLIKPLERFRKE 104 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999764
No 67
>KOG4225|consensus
Probab=97.79 E-value=1.4e-05 Score=84.47 Aligned_cols=54 Identities=22% Similarity=0.518 Sum_probs=47.2
Q ss_pred EEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceee
Q psy10868 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 589 ~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
++|||.|.+++++||-+.+||+|.|++.-| |||.-+.....+..|.||.+||+.
T Consensus 435 yrAly~Y~pqnedeLEl~egDii~VmeKcd-dgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 435 YRALYSYRPQNEDELELREGDIIDVMEKCD-DGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred ceeccccCCCCchhheeccCCEEeeeeccc-CcceeccceecccccccCcccccc
Confidence 799999999999999999999999999874 699999443334899999999974
No 68
>KOG1843|consensus
Probab=97.78 E-value=1.1e-05 Score=84.41 Aligned_cols=54 Identities=26% Similarity=0.562 Sum_probs=48.4
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecC-CCCcEEEEeCCCCceeccccCceee
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQ-GDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~-~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
.++|+|+|.+..+++|+|++||+|+|+.+.+ .+.||.++. ++ .+|++|++||++
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~-~~-~egifPanyv~~ 472 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRG-NG-YEGIFPANYVSL 472 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhc-cc-cccccccceecc
Confidence 7899999999999999999999999999865 348999997 44 999999999975
No 69
>KOG3557|consensus
Probab=97.75 E-value=7.5e-06 Score=90.13 Aligned_cols=58 Identities=22% Similarity=0.488 Sum_probs=51.0
Q ss_pred CccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecc
Q psy10868 585 PLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 585 ~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
....++++|||.|.+..||++.+||+|.|+.+ +.+||.|++..| +.||||.+.+.+..
T Consensus 499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d--~R~WW~~kn~~G-~~GyvP~nIL~~~~ 556 (721)
T KOG3557|consen 499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD--GRKWWKVKNGHG-RAGYVPSNILAPLQ 556 (721)
T ss_pred cceeeeeehhhhcccchhhhhhhhhhhhhhhc--cccceeccCccC-CCCCcchhhhccCC
Confidence 33478999999999999999999999999983 568999999887 99999999887653
No 70
>KOG2546|consensus
Probab=97.73 E-value=1.3e-05 Score=84.27 Aligned_cols=55 Identities=22% Similarity=0.599 Sum_probs=48.8
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
..++|+|||.+..++||+|.+|-+|+|+.++ +||||-+-. +| -.||||.+||+.+
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~kkn-ddgw~EgV~-~~-VTglFpgnyve~~ 478 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVLKKN-DDGWYEGVQ-DG-VTGLFPGNYVEPL 478 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEEEec-CCcchhhee-cC-cceeccCcccccc
Confidence 4589999999999999999999999999987 469999987 44 7899999999854
No 71
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=97.72 E-value=0.054 Score=54.82 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 6 YDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAEN 85 (649)
Q Consensus 6 f~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~ 85 (649)
++.|..+++.-...+..+..=.++-+..-.+|+..+..|+.- + ....+..++..+-.-...++..+...+..
T Consensus 33 ~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~------E--~~~~l~~~l~~l~~~~~~~~~~~~~~a~~ 104 (236)
T PF09325_consen 33 VDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS------E--EEKSLSEALSQLAEAFEKISELLEEQANQ 104 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------c--CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444555555555421 1 12358889999999899999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10868 86 LQVFIIKEVTIFVKDFKEER 105 (649)
Q Consensus 86 L~~~v~~~L~~~~~e~~~~r 105 (649)
....+..+|..++.-....|
T Consensus 105 ~~~~l~~~L~ey~~~~~svk 124 (236)
T PF09325_consen 105 EEETLGEPLREYLRYIESVK 124 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88888888888876555333
No 72
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=97.72 E-value=0.061 Score=53.16 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
..+.+.+.++.-++.|+.+.+-.++=+.....+|.+|.-+...+...... +-..++..+...+..-+..+...|..+-+
T Consensus 10 ~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~-dDe~~I~~~L~kF~~~L~ei~~~r~~L~~ 88 (207)
T cd07636 10 ELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAET-DDEICIARSLQEFAAVLRNLEDERTRMIE 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999998766544211 11235778888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKD 100 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e 100 (649)
..+..+++||..|+++
T Consensus 89 qa~~~l~~~L~~F~ke 104 (207)
T cd07636 89 NASEVLITPLEKFRKE 104 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999764
No 73
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.67 E-value=0.066 Score=52.98 Aligned_cols=89 Identities=10% Similarity=0.187 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
-++.|..+++.=++.|+.|.+..+.=..-+..|+..|..|...+.. + . .+..++..+...+..+...|..+.+
T Consensus 10 ~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~---d---~-~i~~~l~kF~~~l~el~~~~~~L~~ 82 (200)
T cd07603 10 DVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRD---D---S-LVQNCLNKFIQALQEMNNFHTILLD 82 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---c---H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999876521 1 1 5778888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKD 100 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e 100 (649)
++...++.||..|+++
T Consensus 83 q~~~~i~~pL~~F~k~ 98 (200)
T cd07603 83 QAQRTVSTQLQNFVKE 98 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999864
No 74
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.67 E-value=0.061 Score=52.99 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
..+.|..+++.=++.|+.+.+..+.=+.-+..|+.+|..+..-+.. ++ .+..++..+..-+..+...|..+-+
T Consensus 10 ~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~---D~----~i~~~l~kFs~~l~ei~~~~~~Ll~ 82 (200)
T cd07639 10 EVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPK---DP----MMAECLEKFSDGLNHILDSHAELLE 82 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---Cc----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999663321 11 3677788888888888889999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKD 100 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e 100 (649)
+.+..++.||..|+++
T Consensus 83 ~~~~~l~~~L~~F~k~ 98 (200)
T cd07639 83 ATQFSFKQQLQLLVKE 98 (200)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9988899999999874
No 75
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=97.66 E-value=0.066 Score=52.87 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 7 DNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENL 86 (649)
Q Consensus 7 ~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L 86 (649)
+.-.+.++.=++.|..|++-++.=+.....|+.+|..+...+.... +++...++..++..+..-+..+...|..+-++.
T Consensus 12 ~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~-~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~ 90 (207)
T cd07634 12 ERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDA-ETDDEISIAQSLKEFARLLIAVEEERRRLIQNA 90 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777888999999999999999999999999988776542 223334677777777777777777999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy10868 87 QVFIIKEVTIFVKD 100 (649)
Q Consensus 87 ~~~v~~~L~~~~~e 100 (649)
+..|+.||..|+++
T Consensus 91 ~~~l~~pL~~f~k~ 104 (207)
T cd07634 91 NDVLIAPLEKFRKE 104 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999764
No 76
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.61 E-value=0.09 Score=52.05 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccH---HHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYST---CKAFKCVLDEVTDLAGQHEV 81 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~---~~aw~~ll~e~~~~A~~H~~ 81 (649)
..+.|..++..=++.|+.+.+-+++=+.-+..||..|..+.. ..+ +.. .+ ..++..+...+..+...|..
T Consensus 9 ~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~----~~d--D~~-~~a~gg~~l~kF~~~l~ei~~~~~~ 81 (202)
T cd07606 9 SADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGG----GHD--DPI-SVAVGGPVMTKFTSALREIGSYKEV 81 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCC--ChH-HHhccchHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999862 111 111 11 14667777777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10868 82 IAENLQVFIIKEVTIFVKD 100 (649)
Q Consensus 82 lae~L~~~v~~~L~~~~~e 100 (649)
+..+++..++.||..|+++
T Consensus 82 L~~q~~~~l~~pL~~F~k~ 100 (202)
T cd07606 82 LRSQVEHMLNDRLAQFADT 100 (202)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999763
No 77
>KOG1702|consensus
Probab=97.58 E-value=4.6e-05 Score=72.74 Aligned_cols=57 Identities=25% Similarity=0.493 Sum_probs=47.8
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
.+.+|.|||.|+.++|++|.-||.|.-++.- +|||..+.....|..|..|++||+.+
T Consensus 208 ktyra~ydysaqdedevsF~dgd~ivnvq~i-ddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSI-DDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred ccchhhccCcccCcceeEEecCCeEEEEEec-cCCceeeEEEeccccCCCchhheeeC
Confidence 4679999999999999999999998766655 35898877655458999999999864
No 78
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.57 E-value=0.1 Score=51.81 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 7 DNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENL 86 (649)
Q Consensus 7 ~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L 86 (649)
+.|..++..-...+..+..=.++-+.--.+||..|..|+.--.. ...++..+|..+..-+...+..+...+...
T Consensus 14 ~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (218)
T cd07596 14 LKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEE------VGGELGEALSKLGKAAEELSSLSEAQANQE 87 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433444444444444444455566666666642211 112689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccch
Q psy10868 87 QVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGD 166 (649)
Q Consensus 87 ~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~ 166 (649)
...+..||..+..-....|.-+. ....+.
T Consensus 88 ~~~~~e~L~~y~~~~~s~k~~l~-~R~~~~-------------------------------------------------- 116 (218)
T cd07596 88 LVKLLEPLKEYLRYCQAVKETLD-DRADAL-------------------------------------------------- 116 (218)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-HHHHHH--------------------------------------------------
Confidence 99999999998865543333222 111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy10868 167 HLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQ 246 (649)
Q Consensus 167 ~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q 246 (649)
..+ ..+.+.+.+.+.++.++....+..+..++++...+.........++.+|...
T Consensus 117 ---~~~--------------~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i-------- 171 (218)
T cd07596 117 ---LTL--------------QSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI-------- 171 (218)
T ss_pred ---HHH--------------HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 111 1111112222222222222222233456666666666666666666555332
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10868 247 RQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVF 287 (649)
Q Consensus 247 ~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~ 287 (649)
--.+...+..++..|...|+.+|..|+.......
T Consensus 172 -------~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~ 205 (218)
T cd07596 172 -------SERLKEELKRFHEERARDLKAALKEFARLQVQYA 205 (218)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455667788899999999999988866654
No 79
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=97.55 E-value=0.036 Score=56.93 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHH
Q psy10868 103 EERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA 182 (649)
Q Consensus 103 ~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~Ka 182 (649)
+.||.+.+.+.|+++-....+..++++|+.|++.|++.+.|...+..|+++- ...-.+++|.
T Consensus 112 ke~K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~------------------~~s~~q~eK~ 173 (258)
T cd07680 112 KETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQ------------------SVTPEQQKKL 173 (258)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC------------------CCCHHHHHHH
Confidence 4677899999999999999999999999999999999999988888776332 1223456777
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhh
Q psy10868 183 LKNYEKAFRDADKALEHYKRADA 205 (649)
Q Consensus 183 Kk~Y~~~~re~e~a~~k~~ka~~ 205 (649)
+.++.++..+++.+...|+.+-.
T Consensus 174 ~~k~~k~~~~~~~sk~~Y~~~l~ 196 (258)
T cd07680 174 QDKVDKCKQDVQKTQEKYEKVLD 196 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666654433
No 80
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=97.52 E-value=0.026 Score=57.36 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 60 STCKAFKCVLDEVTDLAGQHE-VIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYR 138 (649)
Q Consensus 60 t~~~aw~~ll~e~~~~A~~H~-~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~ 138 (649)
++..--..+..+.+..|+.-. .++..| ..++..+....+.+.....++..+..+. +.+|+|+|+.|+++++
T Consensus 69 ~iL~ete~~A~~~~~~ae~l~~~i~~~l-~~l~~~~~~~rK~~~~~~~kl~~el~~~-------~~el~k~Kk~Y~~~~~ 140 (237)
T cd07657 69 EIMDSTDQLSKLIKQHAEALESGTLDKL-TLLIKDKRKAKKAYQEERQQIDEQYKKL-------TDEVEKLKSEYQKLLE 140 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344455556666666665533 345555 3456777888887777788887776544 4789999999999999
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10868 139 ESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEH 199 (649)
Q Consensus 139 e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k 199 (649)
+.+.|+.+|++|..+. ......++|++.+|...+..+..|+..
T Consensus 141 e~e~Ar~k~e~a~~~~------------------~~~~~~~eKak~k~~~~~~k~~~akNe 183 (237)
T cd07657 141 DYKAAKSKFEEAVVKG------------------GRGGRKLDKARDKYQKACRKLHLCHND 183 (237)
T ss_pred HHHHHHHHHHHHHhhc------------------ccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986332 122345678888887776665554433
No 81
>KOG0197|consensus
Probab=97.51 E-value=4.1e-05 Score=83.55 Aligned_cols=58 Identities=24% Similarity=0.563 Sum_probs=49.8
Q ss_pred CccEEEEcCCCCCCCCCCCCCCCCCE-EEEEeecCCCCcEEEEeCCCCceeccccCceee
Q psy10868 585 PLGTAKALYPFEATSEGSIPMYDGEE-LYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 585 ~~~~~~alydf~~~~~~els~~~ge~-l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
....++|+|||.+..+.+|+|..||+ +.|++..++ .||+++....+.+||||+|||..
T Consensus 10 ~~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~-~Ww~ar~~~~~~~g~ip~N~v~~ 68 (468)
T KOG0197|consen 10 HETIVVALYDYASRTPEDLSFRKGDVVLILLETTNG-DWWRARSLQLGQEGYIPSNYVAR 68 (468)
T ss_pred ccceEEEeccccCCCccccccccCceEEEeeccCCh-hHHHHHHhhcCCCCcCcCceeec
Confidence 34688999999999999999999999 777776544 79999987555899999999974
No 82
>KOG2528|consensus
Probab=97.50 E-value=4.1e-05 Score=81.21 Aligned_cols=58 Identities=28% Similarity=0.606 Sum_probs=53.5
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecc
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
..++|+|||.+.+..||++..||++.|..++.++|||-+.+..| ..|.||++||++..
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrg-e~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRG-ERGLFPASYVEVTR 60 (490)
T ss_pred cchhhhcchhhcccccccccccceeeecCcccccccccCCCccC-ccCCCcccceeeec
Confidence 36789999999999999999999999999998899999999887 89999999999763
No 83
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=97.45 E-value=0.15 Score=50.97 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
+..+.+..+++.-.++|+.+.+-.+.=..-+..|+..|..|...+.... + ..+..++..+..-+..++..|..+.
T Consensus 9 e~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~-~----~~i~~~l~kF~~~l~El~~~~~~L~ 83 (215)
T cd07604 9 ESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSRE-E----EDLGAAFLKFSVFTKELAALFKNLM 83 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcc-c----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888999998888889999999999999997665331 1 1466778888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10868 84 ENLQVFIIKEVTIFVKD 100 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e 100 (649)
.+++..|+.||..|+++
T Consensus 84 ~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 84 QNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 84
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=97.43 E-value=0.14 Score=50.26 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=81.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVI 82 (649)
Q Consensus 3 ~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~l 82 (649)
-+..+.+...++.-++.|+-+.+==+.=++-+..|+..|.+|...+.... + ..+..+|..+...+..++..|..+
T Consensus 8 ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~d-d----~~i~~a~~kfs~~~~El~~~~k~L 82 (215)
T cd07641 8 EEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRD-N----PDLGTAFVKFSTLTKELSTLLKNL 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-c----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888889999999999999999999999999999999999885432 1 157789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10868 83 AENLQVFIIKEVTIFVKD 100 (649)
Q Consensus 83 ae~L~~~v~~~L~~~~~e 100 (649)
-++++.-|..||..++++
T Consensus 83 ~~~~~~~v~~~L~~flK~ 100 (215)
T cd07641 83 LQGLSHNVIFTLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999874
No 85
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.42 E-value=0.17 Score=50.56 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKN-YQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIA 83 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk-~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~la 83 (649)
....|..+++.=++.|..|.+-.++=+.....+++.|..+.+. |.-..+ +.. +..++..+...+..++..|..+.
T Consensus 10 d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~d--De~--~~~~l~kFs~~l~El~~~~~~L~ 85 (215)
T cd07601 10 DALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRD--DEI--LVSTLKQFSKVVDELSTMHSTLS 85 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--cHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999876 321111 211 22577777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10868 84 ENLQVFIIKEVTIFVKD 100 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e 100 (649)
++++..++.||..|+++
T Consensus 86 ~q~~~~l~~pL~~F~k~ 102 (215)
T cd07601 86 SQLADTVLHPISQFMES 102 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999864
No 86
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.32 E-value=0.19 Score=49.21 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 6 YDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAEN 85 (649)
Q Consensus 6 f~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~ 85 (649)
.+.+.+.++.=|+.|+.|++-.+.-+..-+.+|..|..|.-.+...... +-.-++..+...+..-+..+-+.|..+-++
T Consensus 11 le~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~t-dde~~I~~sL~~F~~~L~~ie~~r~~l~d~ 89 (207)
T cd07633 11 LERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLT-DDEINIAESFKEFAELLQEVEEERMMMVQN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999999999999988877654322 123368888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 86 LQVFIIKEVTIFVKDF 101 (649)
Q Consensus 86 L~~~v~~~L~~~~~e~ 101 (649)
-+..++.||..|+++.
T Consensus 90 aq~s~~~~L~~F~Ked 105 (207)
T cd07633 90 ASDLLIKPLENFRKEQ 105 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997653
No 87
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=97.27 E-value=0.22 Score=49.43 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 61 TCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDF 101 (649)
Q Consensus 61 ~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e~ 101 (649)
+..+...+..-+..++..+..+...+...|+.||..+..+.
T Consensus 90 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~ 130 (229)
T PF03114_consen 90 LGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEF 130 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666677777788888888888888887443
No 88
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.25 E-value=0.14 Score=52.63 Aligned_cols=119 Identities=15% Similarity=0.207 Sum_probs=82.9
Q ss_pred cHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 60 STCKAFKCVL---DEVTDLAG-QHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDK 135 (649)
Q Consensus 60 t~~~aw~~ll---~e~~~~A~-~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~ 135 (649)
++...|..+. ...+.+|. ....+++.|. .++..++...+.+...-.+....+.+ .+.+|+|+|+.|++
T Consensus 68 aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~-~~~~~~k~~rK~~~~~~~k~qk~~~~-------~~~~lekaKk~Y~~ 139 (253)
T cd07676 68 AFLMTLNEMNDYAGQHEVISENLASQIIVELT-RYVQELKQERKSHFHDGRKAQQHIET-------CWKQLESSKRRFER 139 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 5666666654 56666666 3345666663 35566777777766655666555543 45788999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy10868 136 AYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRAD 204 (649)
Q Consensus 136 ~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~ 204 (649)
+|++.+.|...+.+|+.+...++ ..++|++.++.....+++.++..|...-
T Consensus 140 acke~E~A~~~~~ka~~d~~~sk------------------~~~eK~k~~~~~~~~~~e~aKn~Y~~~l 190 (253)
T cd07676 140 DCKEADRAQQYFEKMDADINVTK------------------ADVEKARQQAQIRHQMAEDSKAEYSSYL 190 (253)
T ss_pred HHHHHHHHHHHHHhccccccCCH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986544444 3457788888877777777776665443
No 89
>KOG3601|consensus
Probab=97.22 E-value=0.0002 Score=69.33 Aligned_cols=58 Identities=19% Similarity=0.435 Sum_probs=50.3
Q ss_pred CCccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 584 ~~~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
|+.....|+|||++..+++|.++.|+.+.|+...+ ..||.++.. |+.|+||++|+...
T Consensus 161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss-~~ww~Gs~l--g~agiFpagyv~p~ 218 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSS-PFWWFGSKL--GRAGIFPAGYVAPS 218 (222)
T ss_pred ccchhhhhcCCCCCCCchhhccccCCcceeecCCC-cchhhcccc--CceeeecCcccccc
Confidence 44557899999999999999999999999999764 589999985 48999999999643
No 90
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.20 E-value=0.27 Score=48.54 Aligned_cols=89 Identities=17% Similarity=0.272 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
..+.|..+++.=++.|..+.+-.++=+.....++.+|.-+.+ +... + + .+..+...+...+..+...|..+.+
T Consensus 10 d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~-~~~~--D-e---~i~~~l~kF~~~l~ei~~~~~~L~~ 82 (200)
T cd07638 10 DVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQ-YSSK--D-A---VIETSLTKFSDTLQEMINYHTILFD 82 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hCCc--c-h---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999989999999999998866 2211 1 1 3556666666777778889999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKD 100 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e 100 (649)
..+..++.||..|+++
T Consensus 83 q~~~~l~~~L~~F~k~ 98 (200)
T cd07638 83 QAQRSIKAQLQTFVKE 98 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999764
No 91
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.11 E-value=0.37 Score=48.34 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 7 DNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENL 86 (649)
Q Consensus 7 ~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L 86 (649)
+.|..+++.-...++.+..-=++-+..=.++|+.+..|+.- +...++..++..+-+-.+.++..+...+..-
T Consensus 14 ~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~--------E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e 85 (216)
T cd07627 14 DSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSL--------ELSKSLSDLLAALAEVQKRIKESLERQALQD 85 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333444445566777777641 1112677777777777777777777766665
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 87 QVFIIKEVTIFVKDFK 102 (649)
Q Consensus 87 ~~~v~~~L~~~~~e~~ 102 (649)
...+..+|..++.-..
T Consensus 86 ~~~l~~~L~ey~r~~~ 101 (216)
T cd07627 86 VLTLGVTLDEYIRSIG 101 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555556666654433
No 92
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=97.11 E-value=0.36 Score=48.17 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q psy10868 220 NMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIK 299 (649)
Q Consensus 220 k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~ 299 (649)
++.++..+++.|+..|-. .| .--..+||.+++ -|+.++...|..++.+...++..+......|..
T Consensus 140 KL~kae~el~~Ak~~Ye~----lN----~~L~~ELP~L~~-------~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~ 204 (211)
T cd07588 140 KLTKAEEELQQAKKVYEE----LN----TELHEELPALYD-------SRIAFYVDTLQSIFAAESVFHKEIGKVNTKLND 204 (211)
T ss_pred hHHHHHHHHHHHHHHHHH----HH----HHHHHHhHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777732 23 334556777654 589999999999999988888777777766665
Q ss_pred HHHh
Q psy10868 300 AADQ 303 (649)
Q Consensus 300 ~~~~ 303 (649)
.+..
T Consensus 205 ~~~~ 208 (211)
T cd07588 205 VMDG 208 (211)
T ss_pred HHhh
Confidence 5543
No 93
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=97.07 E-value=0.0021 Score=52.46 Aligned_cols=63 Identities=37% Similarity=0.492 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 398 QRIEEIQHSIQQESAAREGLIKMKGVYE-DNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYME 462 (649)
Q Consensus 398 ~kl~el~~~i~k~~~~~~gl~km~~~y~-~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~ 462 (649)
++|++|+..|+++.+=++|.++|..+|. ++|. -...++.+|.++..+|+.|+.++.+++....
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~--~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTDKKK--VLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4789999999999999999999999993 3332 2446788999999999999999998876543
No 94
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=97.01 E-value=0.36 Score=49.48 Aligned_cols=76 Identities=26% Similarity=0.393 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 68 VLDEVTDLAGQHE-VIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEH 146 (649)
Q Consensus 68 ll~e~~~~A~~H~-~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~ 146 (649)
+......+|..-. .++..|. ..+.......+.......++...+.+ .+.+++|+++.|...|++...|+.+
T Consensus 77 ~a~~H~~~a~~l~~~v~~~l~-~~~~~~~~~rK~~~~~~~kl~~~~~~-------~~~~l~kskk~Y~~~~ke~~~a~~k 148 (251)
T cd07653 77 IAGQHELIAENLNSNVCKELK-TLISELRQERKKHLSEGSKLQQKLES-------SIKQLEKSKKAYEKAFKEAEKAKQK 148 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444222 3334442 23344444445555555555555543 3477899999999999999999999
Q ss_pred HHHHh
Q psy10868 147 YKRAD 151 (649)
Q Consensus 147 ~~ka~ 151 (649)
+.++.
T Consensus 149 ~~~~~ 153 (251)
T cd07653 149 YEKAD 153 (251)
T ss_pred HHHhh
Confidence 98876
No 95
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.93 E-value=0.55 Score=47.42 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 20 LEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVK 99 (649)
Q Consensus 20 ~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~ 99 (649)
++.+..-=++-+..+-++|++|..|+..- ...++..+|..+-.-...+++.|...|......+.+||..++.
T Consensus 41 ~~~lvk~rr~La~~~~dfg~~l~~Ls~~E--------~~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~ 112 (230)
T cd07625 41 LLRVSKARKQLSLEEADFGQKLIQLSVEE--------THHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISR 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------ccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555667777777765321 2237999999999999999999999999999999999999987
Q ss_pred HHHHH
Q psy10868 100 DFKEE 104 (649)
Q Consensus 100 e~~~~ 104 (649)
+....
T Consensus 113 ~~~~v 117 (230)
T cd07625 113 DAYVV 117 (230)
T ss_pred HHHHH
Confidence 66533
No 96
>KOG3601|consensus
Probab=96.85 E-value=0.0002 Score=69.39 Aligned_cols=54 Identities=24% Similarity=0.470 Sum_probs=46.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceee
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
.+.|+|+|.+...+||+|.+|+.|.++...+.-.|.++.. .| .+||+|.||+.+
T Consensus 2 ea~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael-~g-~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 2 EAVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAEL-DG-PEGFIPKNAIRM 55 (222)
T ss_pred chhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhh-cC-ccccCccccccc
Confidence 4678999999999999999999999998775447999887 44 899999999965
No 97
>KOG3632|consensus
Probab=96.75 E-value=0.0013 Score=75.84 Aligned_cols=62 Identities=19% Similarity=0.449 Sum_probs=52.5
Q ss_pred CccEEEEcCCCCCC--------CCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecccCC
Q psy10868 585 PLGTAKALYPFEAT--------SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIALDN 648 (649)
Q Consensus 585 ~~~~~~alydf~~~--------~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~~~~ 648 (649)
+....+|||||++. .+.||+|++|++|.|+...|.||++.++. +| +.|+||.++|.....+|
T Consensus 1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~-ng-r~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL-NG-RRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred cceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc-cc-ccccccccccccccCCc
Confidence 44578999999984 35799999999999999877889999997 44 99999999998776554
No 98
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.68 E-value=0.77 Score=45.45 Aligned_cols=89 Identities=10% Similarity=0.150 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
..+.|..+++.=+++|+.+.+.-+.=+..=+.|+..|..+...+.. + ..+..+...+...+..+...|..+..
T Consensus 10 ~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~g---d----~~i~~~L~kF~~~l~ei~~~~~~l~~ 82 (200)
T cd07637 10 DVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKK---D----EMISECLDKFGDSLQEMVNYHMILFD 82 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---c----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888877666666666677777776665421 1 14777888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKD 100 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e 100 (649)
.+...+++||..|+++
T Consensus 83 q~e~~l~~pL~~F~k~ 98 (200)
T cd07637 83 QAQRSVRQQLHSFVKE 98 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999864
No 99
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=96.66 E-value=0.89 Score=45.88 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
.++.|..+++.-..-++.|..-=++-+..=.++|+.+..|+.- +. ..++..++..+-+-.+.++..+...|.
T Consensus 20 ~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~-----E~---~~~Ls~al~~la~~~~ki~~~~~~qa~ 91 (224)
T cd07623 20 QIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNC-----EE---HTSLSRALSQLAEVEEKIEQLHGEQAD 91 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cc---chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777776677777777888888888741 11 126888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKDFK 102 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e~~ 102 (649)
.....+..+|..++....
T Consensus 92 ~d~~~l~e~L~eY~r~i~ 109 (224)
T cd07623 92 TDFYILAELLKDYIGLIG 109 (224)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777765444
No 100
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=96.61 E-value=0.87 Score=46.42 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHH
Q psy10868 233 TEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDG 296 (649)
Q Consensus 233 ~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~ 296 (649)
.-+...+.++... ..-++...+.++..|+.+..++...|.+++..|..++......+...+..
T Consensus 174 ~Kl~~k~~ka~~~-~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~~E~~rl~~~k~~l~~ 236 (239)
T cd07658 174 EKLEAKRKKGEES-RLKAENEYYTCCVRLERLRLEWESALRKGLNQYESLEEERLQHLKHSLSQ 236 (239)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777666 56688899999999999999999999999999999998887666655443
No 101
>KOG0996|consensus
Probab=96.57 E-value=2.5 Score=51.03 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 7 DNLSLHTQKGIDFLE-KYGHFIRDRCAIEMEYAGK---LRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVI 82 (649)
Q Consensus 7 ~~L~~~~~~gi~~~e-~l~~f~keRa~iE~eYAk~---L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~l 82 (649)
+.+...+..-...++ .+.++-+++..+|.++.+- |..+.++..+.... +-.+ ..=..+++..-.-+...
T Consensus 369 e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke------~ek~-~~~~~e~e~~pe~~~~~ 441 (1293)
T KOG0996|consen 369 EAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKE------IEKA-RRKKSELEKAPEKARIE 441 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HhhHHHHHhCchhhHhH
Confidence 444445555556666 6777777788888887763 22222222111000 0000 00012222222223222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy10868 83 AENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADL 154 (649)
Q Consensus 83 ae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l 154 (649)
.+.++.++ ..+....++.++.+.+...++.+.=.....++.+..+.......+..+++.+.+-|+.+|
T Consensus 442 i~~~~~ei----~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel 509 (1293)
T KOG0996|consen 442 IQKCQTEI----EQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESEL 509 (1293)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222 333333334444444444444444444445555555555555555555555555555444
No 102
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=96.56 E-value=0.57 Score=47.41 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 69 LDEVTDLAGQHE-VIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHY 147 (649)
Q Consensus 69 l~e~~~~A~~H~-~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~ 147 (649)
-......|+.-. .++..|. ..+.....+.+.+.....++..+..++. +.++.|+|+.|+..|++...++.++
T Consensus 78 A~~~~~~aE~l~~~i~~~l~-~l~~~~~~~~k~~~~~~~kl~~e~~~~~------~~~l~K~K~~Y~~~~~~~e~ar~K~ 150 (234)
T cd07686 78 SKIMKTHAEELNSGPLHRLT-MMIKDKQQVKKSYIGVHQQIEAEMYKVT------KTELEKLKCSYRQLTKEVNSAKEKY 150 (234)
T ss_pred HHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444322 2444442 2345556667777777777777765433 5678999999999999999998888
Q ss_pred HHHh
Q psy10868 148 KRAD 151 (649)
Q Consensus 148 ~ka~ 151 (649)
.++.
T Consensus 151 ~~a~ 154 (234)
T cd07686 151 KDAV 154 (234)
T ss_pred HHhh
Confidence 7763
No 103
>KOG4575|consensus
Probab=96.48 E-value=0.0036 Score=69.20 Aligned_cols=58 Identities=19% Similarity=0.487 Sum_probs=46.0
Q ss_pred ccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEE-EeCCCCceeccccCceeecc
Q psy10868 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRV-RRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 586 ~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v-~~~~g~~~G~vP~syv~~~~ 645 (649)
...++|+|.+.++.+|+|-|.+||++.++.-. +|||.. +..+....|+||++||.++.
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~--dgkwwi~lhrNk~~~g~fpsNFvhcLd 66 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIE--DGKWWILLHRNKDEDGLFPSNFVHCLD 66 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEeec--cceeeeeeeecccccccCcccceeecc
Confidence 35779999999999999999999999999865 355554 43333367999999997653
No 104
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.48 E-value=1.2 Score=45.20 Aligned_cols=204 Identities=10% Similarity=0.122 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
.++.|..+++.-.+.++.|..==++-+..=.++|+.+.-|+.-= -..++..++..+-+--+.++..|...|.
T Consensus 30 ~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E--------~~~~Ls~als~laev~~~i~~~~~~qa~ 101 (234)
T cd07665 30 EVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSE--------DNTALSRALSQLAEVEEKIEQLHQEQAN 101 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666565555566666777888888776321 1126889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccc
Q psy10868 85 NLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQD 164 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~ 164 (649)
...-....+|..++.-.... |.+++...++-..+++...+|.|.+....++..-.. ..++..+.
T Consensus 102 qd~~~f~e~l~eYiRli~SV-K~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~--~dK~~~a~------------- 165 (234)
T cd07665 102 NDFFLLAELLADYIRLLSAV-RGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANK--PDKLQQAK------------- 165 (234)
T ss_pred HHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHH-------------
Confidence 99888888999988765543 345555555555555555555554444333321100 01111111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy10868 165 GDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANE 244 (649)
Q Consensus 165 ~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~ 244 (649)
.++......+..+++.|+..++-+. .++.+.. ..+..++.++=..|......+..
T Consensus 166 -----~Ev~e~e~k~~~a~~~fe~is~~ik-----------------~El~rFe---~er~~Dfk~~v~~fles~ie~qk 220 (234)
T cd07665 166 -----DEIAEWESRVTQYERDFERISATVR-----------------KEVIRFE---KEKSKDFKNHIIKYLETLLHSQQ 220 (234)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444445554433222 2222221 12344566677788777777777
Q ss_pred HhHHHHHhhHHHH
Q psy10868 245 MQRQHYTQAMPEV 257 (649)
Q Consensus 245 ~q~~~y~~~mp~i 257 (649)
..-..|++.+|..
T Consensus 221 e~ie~We~flp~~ 233 (234)
T cd07665 221 QLVKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHhcccc
Confidence 6688888888853
No 105
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.44 E-value=0.34 Score=49.38 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 62 CKAFKCVLDEVTDLAGQHEVIAENLQVFI 90 (649)
Q Consensus 62 ~~aw~~ll~e~~~~A~~H~~lae~L~~~v 90 (649)
..-...+......+...+..+...|+.++
T Consensus 98 ~~~l~~l~~d~~~~~Kk~~e~~~~lq~el 126 (241)
T cd07656 98 VQRLGQMSEDLQRISKKCREIGSQLHDEL 126 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555444
No 106
>KOG3725|consensus
Probab=96.44 E-value=0.0014 Score=64.81 Aligned_cols=57 Identities=21% Similarity=0.451 Sum_probs=47.8
Q ss_pred ccEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCC-CCcEEEEeCCCCceeccccCceeec
Q psy10868 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQG-DGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 586 ~~~~~alydf~~~~~~els~~~ge~l~v~~~~~~-~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
...+++||||++..+.||++-..|+|.|..-..- .+|..+++ |++.|-||-+|+++.
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgEr--GnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGER--GNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhh--cCCCCCcchhHHHhc
Confidence 3578999999999999999999999998886522 36888885 358999999999864
No 107
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.40 E-value=1.3 Score=44.70 Aligned_cols=69 Identities=6% Similarity=0.121 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q psy10868 219 INMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGII 298 (649)
Q Consensus 219 ~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~ 298 (649)
.++.++..+++.|+.+|-. +|.. -.++||.+ -.-|+.++...|..+..+...++....+.+..|.
T Consensus 145 ~KL~kae~el~~Ak~~ye~----~N~~----L~~ELP~l-------~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~ 209 (225)
T cd07590 145 AKLEQAEKALAAARADFEK----QNIK----LLEELPKF-------YNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLA 209 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHH----HHHHhHHH-------HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777733 2332 33445655 4568889998888888887777766666666665
Q ss_pred HHHH
Q psy10868 299 KAAD 302 (649)
Q Consensus 299 ~~~~ 302 (649)
.-++
T Consensus 210 ~~~d 213 (225)
T cd07590 210 PNLD 213 (225)
T ss_pred Hhhc
Confidence 5443
No 108
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.38 E-value=1.5 Score=45.25 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10868 170 KILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQL 239 (649)
Q Consensus 170 k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l 239 (649)
++|..++++|+++||.|+..+++++.|+.+++.++.....+..++..-+..+++...+......+|...+
T Consensus 123 ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~k~~K~~~~~~~sk~~~eK~~~K~~~~~~~~~~k~ 192 (263)
T cd07678 123 AELLETVKELSKSKKLYGQLERVSEVAKEKAADVEARLNKSDHGIFHSKASLQKLSAKFSAQSAEYSQQL 192 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888999999999999999999999999888775433333332223333333333223334454333
No 109
>smart00721 BAR BAR domain.
Probab=96.32 E-value=1.4 Score=44.35 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 61 TCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFV 98 (649)
Q Consensus 61 ~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~ 98 (649)
+..+...+...+..++..+..+ ..+...++.|+..+.
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 129 (239)
T smart00721 93 YGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHH
Confidence 4445455555556666666666 666666666666554
No 110
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=96.31 E-value=0.87 Score=45.64 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 66 KCVLDEVTDLAGQHE-VIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKAL 144 (649)
Q Consensus 66 ~~ll~e~~~~A~~H~-~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~ 144 (649)
..+...+...|+.-. .++++|. -++.....+.+.....+..+-.+..+.. ..+++|+|+.|+.+|++...|+
T Consensus 79 E~isk~~~~~Aeeln~~~~~kLs-~L~~~k~~~rK~~~~~~q~i~~e~~~~t------~~eveK~Kk~Y~~~c~~~e~AR 151 (237)
T cd07685 79 ETLSQVLRKHAEDLNAGPLSKLS-LLIRDKQQLRKTFSEQWQLLKQEYTKTT------QQDIEKLKSQYRSLAKDSAQAK 151 (237)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333 2355553 2344455544444455555555555444 3468899999999999999999
Q ss_pred HHHHHH
Q psy10868 145 EHYKRA 150 (649)
Q Consensus 145 ~~~~ka 150 (649)
.+|+++
T Consensus 152 ~K~eka 157 (237)
T cd07685 152 RKYQEA 157 (237)
T ss_pred HHHHhc
Confidence 999886
No 111
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.31 E-value=1.5 Score=44.53 Aligned_cols=56 Identities=9% Similarity=0.223 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 230 DTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKV 286 (649)
Q Consensus 230 ~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~ 286 (649)
.++.++...=.+.... ...|+..-..+-..|..++.+|+..|++.|..|.......
T Consensus 163 ~~~~ev~~~e~~~~~a-~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~ 218 (234)
T cd07664 163 QAKDEIKEWEAKVQQG-ERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQT 218 (234)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333 4455665566667788889999999999999998775443
No 112
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=96.31 E-value=1.4 Score=44.25 Aligned_cols=83 Identities=8% Similarity=0.123 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 14 QKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKE 93 (649)
Q Consensus 14 ~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~ 93 (649)
.+=+..+..|..-++.-+..-..|...|++++........ ...+..+...+..-...+...+..+...|..+++.|
T Consensus 13 e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~----s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~p 88 (219)
T PF08397_consen 13 ENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRG----SKELGDALMQISEVHRRIENELEEVFKAFHSELIQP 88 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666677777788899999999987654321 124777888888888888888889999999999988
Q ss_pred HHHHHHH
Q psy10868 94 VTIFVKD 100 (649)
Q Consensus 94 L~~~~~e 100 (649)
|...++.
T Consensus 89 Le~~~e~ 95 (219)
T PF08397_consen 89 LEKKLEE 95 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 113
>KOG3523|consensus
Probab=96.26 E-value=0.00078 Score=74.27 Aligned_cols=58 Identities=21% Similarity=0.489 Sum_probs=49.5
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeeccc
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIAL 646 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~~ 646 (649)
.+.+.-.|.+..++||++..||+|.|+... .|||..+.....|..||||.+|++.+.-
T Consensus 610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~-~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 610 QVQCVHSYKAKQPDELTLELADVVNVLQKT-PDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred hhheeeccccCCCceeeeehhhhhhhhhcC-CCccccccccccCccCcchHHHHHHhcC
Confidence 445677899999999999999999999977 5799999876545899999999987653
No 114
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.13 E-value=1.1 Score=45.75 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 122 QVIALERARKNYDKAYRESDKALEHYKRAD 151 (649)
Q Consensus 122 ~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~ 151 (649)
.+..++|+|+.|...|++.+.|...|.++.
T Consensus 118 ~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~ 147 (239)
T cd07647 118 LYKKTMKAKKSYEQKCREKDKAEQAYEKSS 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999988887653
No 115
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=95.70 E-value=2.5 Score=41.94 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 7 DNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENL 86 (649)
Q Consensus 7 ~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L 86 (649)
-.|..++.+-...+.++-.--++-+..-+.+|+.|...-|+-.+-..+ + . -+..+...+...+..+...|..+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~d-D-e-~i~~~L~kFs~~L~El~~~~~~L~~q~ 88 (215)
T cd07631 12 AAISNYFNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGD-D-E-VMSSTLQQFSKVIDELSSCHAVLSTQL 88 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC-c-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777888888888888888766554444322 1 1 377888888888888999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy10868 87 QVFIIKEVTIFVKD 100 (649)
Q Consensus 87 ~~~v~~~L~~~~~e 100 (649)
+..++.||..|+++
T Consensus 89 ~~sl~~pL~~F~ke 102 (215)
T cd07631 89 ADAMMFPITQFKER 102 (215)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999764
No 116
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=95.50 E-value=0.013 Score=44.92 Aligned_cols=37 Identities=24% Similarity=0.584 Sum_probs=29.8
Q ss_pred CCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCcee
Q psy10868 605 MYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642 (649)
Q Consensus 605 ~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~ 642 (649)
+..|+.|.|+....+.+|.+|+..+| ..|||++.||+
T Consensus 19 l~~g~~v~v~~~~~~~~W~~V~~~~g-~~GwV~~~~l~ 55 (55)
T PF08239_consen 19 LPKGEKVTVLGESGDGNWYKVRTYDG-KTGWVSSSYLS 55 (55)
T ss_dssp EETTSEEEEEEEETT--EEEEEEETT-EEEEEEGGCEE
T ss_pred EeCCCEEEEEEEcCCcEEEEEECcCC-cEEEEEccccC
Confidence 46789999999875434999977777 79999999985
No 117
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.45 E-value=12 Score=48.00 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhh
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEG 438 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~ 438 (649)
.+...++.++.+|++.+++.++...-+....+.+..+| -|+..++.
T Consensus 513 ~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~ 558 (1486)
T PRK04863 513 EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNL--DDEDELEQ 558 (1486)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHH
Confidence 45778999999999998887776666665555444443 45555433
No 118
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=95.39 E-value=1 Score=46.23 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 105 RKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKA 143 (649)
Q Consensus 105 rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a 143 (649)
+|.+.+...++++--......+.++|+.|+..|++-..+
T Consensus 114 ~K~~e~~f~kaqK~w~k~~kk~~~sKk~Y~~~ck~e~~a 152 (258)
T cd07681 114 SKEAEEGFRKAQKPWVKKLKEVESSKKGYHAARKDERTA 152 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777666666677788888888888665444
No 119
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=95.31 E-value=0.019 Score=48.07 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCcee
Q psy10868 599 SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642 (649)
Q Consensus 599 ~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~ 642 (649)
+.-+|++++||+|.||+..+ ++-|..|+..| +-||||.+++-
T Consensus 29 G~kDLpi~~GE~LeVI~~t~-~~kvlCRN~~G-KYGYV~~~~L~ 70 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTD-DNKVLCRNSEG-KYGYVLRSHLL 70 (89)
T ss_dssp -TTB----TT-B-EEEEESS-SSEEEEEETTT-EEEEEEGGGS-
T ss_pred CcccCCcCCCCEEEEEEeCC-CCeEEEeCCCC-ceeEEEHHHcc
Confidence 45689999999999999875 48999999988 99999999984
No 120
>KOG0609|consensus
Probab=95.31 E-value=0.0097 Score=65.42 Aligned_cols=55 Identities=25% Similarity=0.555 Sum_probs=44.7
Q ss_pred cEEEEcCCCCCCC-------CCCCCCCCCCEEEEEeecCCCCcEEEEeCC---CCceeccccCcee
Q psy10868 587 GTAKALYPFEATS-------EGSIPMYDGEELYIIELDQGDGWTRVRRQT---DSEEGFVPTSYIQ 642 (649)
Q Consensus 587 ~~~~alydf~~~~-------~~els~~~ge~l~v~~~~~~~gW~~v~~~~---g~~~G~vP~syv~ 642 (649)
...+|+|||++.. +.-|+|+.||+|.|+..+| +.||.++... ++..|.+|+...+
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD-~nWWQA~~~~~~~~~~AGLiPS~~~q 279 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDD-PNWWQARRVGDPFGGLAGLIPSKELQ 279 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCC-cchhhhhcccCccccccccccCHHHH
Confidence 5789999999864 4678999999999999885 5899999863 3467999987654
No 121
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.25 E-value=4.2 Score=41.67 Aligned_cols=98 Identities=9% Similarity=0.037 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc----------cccccccHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE----------EEDYQYSTCKAFKCVLDEVT 73 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~----------~~~~~~t~~~aw~~ll~e~~ 73 (649)
+.|..+..++..-+.....+...+..-+.=-+..|..+..++.-+..-.. +.+.-..+..++..+.....
T Consensus 22 ~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~~ 101 (246)
T cd07597 22 EQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHFQ 101 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444433333334444444444443322210 00111367888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 74 DLAGQHEVIAENLQVFIIKEVTIFVKDF 101 (649)
Q Consensus 74 ~~A~~H~~lae~L~~~v~~~L~~~~~e~ 101 (649)
..+.....-+....+.++++|+.+..-+
T Consensus 102 ~~s~~~~~~a~~~~~~vlE~Lk~~~d~l 129 (246)
T cd07597 102 LLSDLSEDEARAEEDGVLEKLKLQLDLL 129 (246)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8888888888888888888888886533
No 122
>KOG3632|consensus
Probab=95.25 E-value=0.044 Score=63.73 Aligned_cols=61 Identities=20% Similarity=0.413 Sum_probs=50.7
Q ss_pred CccEEEEcCCCCC---C---CCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeeccc
Q psy10868 585 PLGTAKALYPFEA---T---SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIAL 646 (649)
Q Consensus 585 ~~~~~~alydf~~---~---~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~~ 646 (649)
.+-.|+|+|.|.+ . -+.||.+..|+.|+|...-+.||+..+...+| +.|.||++||+.+..
T Consensus 446 k~q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dg-rrglvPsnFVe~v~d 512 (1335)
T KOG3632|consen 446 KAQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDG-RRGLVPSNFVEVVTD 512 (1335)
T ss_pred ccceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecc-cccCCCchheEEecc
Confidence 3446899997554 3 35799999999999998766789999999998 999999999997653
No 123
>KOG1451|consensus
Probab=95.19 E-value=7 Score=43.92 Aligned_cols=56 Identities=20% Similarity=0.436 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
..+.++|.=.+....++++..|.++.=+-+...+||..++. +| ..|++|++||+++
T Consensus 757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL-nG-ktglip~nyve~l 812 (812)
T KOG1451|consen 757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTL-NG-KTGLIPSNYVEPL 812 (812)
T ss_pred ccccceeccCCCCcccccccCcceeeeecccCCCCceeeec-CC-CcccCcccccCcC
Confidence 45788888888889999999999997666555679999998 45 8999999999863
No 124
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=95.12 E-value=4.5 Score=41.35 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=61.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHhhcCC-----cccccccccHHHHHHHHH
Q psy10868 1 VFQDQYDNLSLHTQKGIDFLEKYGH---FIRDR---CAIEMEYAGKLRRLVKNYQPK-----KEEEDYQYSTCKAFKCVL 69 (649)
Q Consensus 1 ~L~Dgf~~L~~~~~~gi~~~e~l~~---f~keR---a~iE~eYAk~L~kLakk~~~~-----~~~~~~~~t~~~aw~~ll 69 (649)
+|-|.|..|.++++.-..++..+.. .+-.+ ..+| |.++|+.--.... ...-...+.+..+...+-
T Consensus 12 ~l~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~e----kr~rk~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g 87 (244)
T cd07595 12 VLSDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKD----KRLKKLPEYGLAQSMLESSKELPDDSLLGKVLKLCG 87 (244)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHh----hhhccCcHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3778999999999888888777755 11111 1111 1222211111000 000012345778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 70 DEVTDLAGQHEVIAENLQVFIIKEVTIFVK 99 (649)
Q Consensus 70 ~e~~~~A~~H~~lae~L~~~v~~~L~~~~~ 99 (649)
.....+|..+..+-..+...++.||..++.
T Consensus 88 ~a~~~ia~~~~~~d~~i~~~fl~pL~~~le 117 (244)
T cd07595 88 EAQNTLARELVDHEMNVEEDVLSPLQNILE 117 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999998874
No 125
>KOG2856|consensus
Probab=95.12 E-value=1.1 Score=47.39 Aligned_cols=57 Identities=25% Similarity=0.561 Sum_probs=52.6
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
..++|||||.++..+||+|+.||.|.++++.|..||.++|...| +.|++|+|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G-~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSG-RVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCC-cccccchhhhhcc
Confidence 57899999999999999999999999999877779999999777 9999999999875
No 126
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=95.10 E-value=3.3 Score=41.18 Aligned_cols=72 Identities=7% Similarity=0.233 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHH
Q psy10868 218 RINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGI 297 (649)
Q Consensus 218 ~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l 297 (649)
..++.++..++..|++.|-. +|.. -.++||.+++ -||.++...|..++.+...++..+...+..|
T Consensus 138 ~~KL~kAe~el~~Ak~~ye~----lN~~----L~~ELP~L~~-------~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l 202 (211)
T cd07612 138 DAKIAKAEEEFNRAQVVFED----INRE----LREELPILYD-------SRIGCYVTVFQNISNLRDTFYKEMSKLNHDL 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888833 3333 3456776654 6899999999999988888888777777777
Q ss_pred HHHHHhh
Q psy10868 298 IKAADQI 304 (649)
Q Consensus 298 ~~~~~~I 304 (649)
...+..+
T Consensus 203 ~~~~~~l 209 (211)
T cd07612 203 YNVMKKL 209 (211)
T ss_pred HHHHHhc
Confidence 6665543
No 127
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=95.07 E-value=4.6 Score=41.22 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy10868 123 VIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKR 202 (649)
Q Consensus 123 ~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~k 202 (649)
+..++++|+.|+..|++.+.|...+.++.. ..+-++++|.+.++.++...++.+...|+.
T Consensus 119 ~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~--------------------~~t~keleK~~~K~~k~~~~~~~a~~~Y~~ 178 (242)
T cd07671 119 YKKTMESKKTYEQRCREADEAEQTFERSSS--------------------TGNPKQSEKSQNKAKQCRDAATEAERVYKQ 178 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999888766655431 112244566666666655555555555543
No 128
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=95.04 E-value=3.8 Score=41.35 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhcCCcc------------ccc--ccc
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRD--------RCAIEMEYAGKLRRLVKNYQPKKE------------EED--YQY 59 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~ke--------Ra~iE~eYAk~L~kLakk~~~~~~------------~~~--~~~ 59 (649)
|-+.|..|.++++.-..+++++..=+.+ |++.=. | .|+-++-..... +.+ ..+
T Consensus 15 ~d~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~-~----~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~S 89 (229)
T cd07616 15 LDAHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFV-Y----EKLDRKAPSRMNNPELLGQYMIDAGNEFGPGT 89 (229)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHH-H----HHHhccCCCCCChHHHHHHHHHHHHHhcCCCC
Confidence 4578999999999888888877654433 222211 2 233222211110 001 134
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 60 STCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVK----DFKEERKKHLQDGARMMNLLENQVIALERARKNYDK 135 (649)
Q Consensus 60 t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~----e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~ 135 (649)
.+..|...+-.....+|+.+..+.......++.||+.++. +..+.||++ .+..=.++.+|..+.+
T Consensus 90 ~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkL-----------e~rRLdyD~~K~r~~k 158 (229)
T cd07616 90 AYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLL-----------QNKRLDLDAAKTRLKK 158 (229)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhc
Confidence 5788888888889999999999988888899999998764 222333333 2333345555555554
Q ss_pred H---------HHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 136 A---------YRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRD 192 (649)
Q Consensus 136 ~---------~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re 192 (649)
+ -.+.+.++.+|+.+...... ++..+.+.+ .+--.+...+-.|.-.|++.|.+
T Consensus 159 Ak~~~~~~~~e~elr~ae~efees~E~a~~-~m~~i~~~~---~e~~~~L~~lv~AQl~Yh~~~~e 220 (229)
T cd07616 159 AKVAEARAAAEQELRITQSEFDRQAEITRL-LLEGISSTH---AHHLRCLNDFVEAQMTYYAQCYQ 220 (229)
T ss_pred CCcchhhcchHHHHHHHHHHHHHHHHHHHH-HHHhhhhcC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455577777766544333 333222111 11223344566666777776654
No 129
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=95.01 E-value=4.3 Score=40.50 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10868 255 PEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFP 288 (649)
Q Consensus 255 p~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~ 288 (649)
..+=..|+.++.+|+..|+..|..|++.+.....
T Consensus 171 ~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak 204 (218)
T cd07662 171 ESAKQELIDFKTRRVAAFRKNLVELAELELKHAK 204 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344568888999999999999999998776643
No 130
>KOG1451|consensus
Probab=94.98 E-value=0.052 Score=59.97 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 7 DNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENL 86 (649)
Q Consensus 7 ~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L 86 (649)
+.-.+.++.-|+-++.|+..++.-+..-+.||+.|+..-=.+-... .++-.-.+..++..+-.-+.+.-+.+..++.+-
T Consensus 30 ~~tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~-~tdde~~ia~slkefa~ll~~ve~er~~~v~~A 108 (812)
T KOG1451|consen 30 DRTNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDA-ETDDEIFIATSLKEFASLLNQVEDERMRMVGNA 108 (812)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeecccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555556666677777777777777777777765432221111 112222455555555554555555677777776
Q ss_pred HHHHHHHHHHHHHHH
Q psy10868 87 QVFIIKEVTIFVKDF 101 (649)
Q Consensus 87 ~~~v~~~L~~~~~e~ 101 (649)
..-++.||..|.+++
T Consensus 109 se~li~PlekFRkEq 123 (812)
T KOG1451|consen 109 SESLIEPLEKFRKEQ 123 (812)
T ss_pred HHHHHhHHHHHHHHH
Confidence 667789999997765
No 131
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=94.91 E-value=4.3 Score=40.06 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 60 STCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKD 100 (649)
Q Consensus 60 t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e 100 (649)
.+..+...+...+..+-..|..+.+.++..++.||..|+++
T Consensus 62 ~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~Ke 102 (215)
T cd07632 62 EVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREK 102 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666678899999999999999999999764
No 132
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=94.88 E-value=4.6 Score=40.20 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q psy10868 219 INMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGII 298 (649)
Q Consensus 219 ~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~ 298 (649)
.++.++.++++.|+++|-. +|.. -.+.||.+++ -||.++-..|..++.+...++..+...+..|.
T Consensus 139 ~KL~kAe~el~~Ak~~ye~----lN~~----Lk~ELP~L~~-------~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~ 203 (211)
T cd07611 139 GRIAKAEEEFQKAQKVFEE----FNVD----LQEELPSLWS-------RRVGFYVNTFKNVSSLEAKFHKEISVLCHKLY 203 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHH-------hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677778888833 3333 3456777655 58899999999999888888887777777776
Q ss_pred HHHHhh
Q psy10868 299 KAADQI 304 (649)
Q Consensus 299 ~~~~~I 304 (649)
.....+
T Consensus 204 ~~~~~l 209 (211)
T cd07611 204 EVMTKL 209 (211)
T ss_pred HHHHhh
Confidence 665543
No 133
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=94.86 E-value=5 Score=40.59 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=33.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10868 247 RQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVF 287 (649)
Q Consensus 247 ~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~ 287 (649)
+..|...--.++..++-|++.|+..|...|..|.+....+.
T Consensus 182 k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~ 222 (229)
T PF06456_consen 182 KERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYF 222 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44555556678888999999999999999999999877664
No 134
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=94.63 E-value=5.4 Score=39.91 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=30.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10868 249 HYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFP 288 (649)
Q Consensus 249 ~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~ 288 (649)
.|+..-..+=..|..++.+|+..|+..|..|+..+.....
T Consensus 165 ~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak 204 (218)
T cd07663 165 KFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAK 204 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455668889999999999999999998776643
No 135
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=94.59 E-value=6.3 Score=40.45 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 105 RKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKR 149 (649)
Q Consensus 105 rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~k 149 (649)
.|.+.+...|+++--......++++|+.|+.+|++.+.|......
T Consensus 114 ~k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~ 158 (258)
T cd07679 114 TKEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREAN 158 (258)
T ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 466777788888777777888889999999999988777555433
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.59 E-value=0.027 Score=55.84 Aligned_cols=40 Identities=15% Similarity=0.486 Sum_probs=33.8
Q ss_pred CCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecc
Q psy10868 605 MYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 605 ~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
+..|+.|.|++..++.||.+|+..+| .+||||+.|+...+
T Consensus 50 l~~G~~v~vl~~~~~~~w~~Vr~~~G-~~GWV~~~~Ls~~p 89 (206)
T PRK10884 50 LNAGEEVTLLQVNANTNYAQIRDSKG-RTAWIPLKQLSTTP 89 (206)
T ss_pred EcCCCEEEEEEEcCCCCEEEEEeCCC-CEEeEEHHHhcCCc
Confidence 57899999999775458999998776 99999999997543
No 137
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=94.58 E-value=0.26 Score=42.08 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 389 PSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 389 ~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
...++..|++.+..|++.++++..-+.+|++.... ...|....|..+-.+..+.-..|..|+.++.+|+.++.++-.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~-~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGR-SSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999988765 344444667778889999999999999999999999998865
No 138
>KOG2222|consensus
Probab=94.45 E-value=0.0096 Score=63.87 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=48.3
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecc
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~ 645 (649)
..++||.||.-..++||.|+++|+++|+.+.+ ...|.+.. +| -.||||+.||++..
T Consensus 549 krakal~df~r~dddelgfrkndiitiisekd-ehcwvgel-ng-lrgwfpakfvelld 604 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISEKD-EHCWVGEL-NG-LRGWFPAKFVELLD 604 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeecCC-cceeeecc-cc-ccccchHHHHHHHH
Confidence 36899999999999999999999999999774 46788877 45 78999999998764
No 139
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=94.29 E-value=0.2 Score=39.06 Aligned_cols=55 Identities=24% Similarity=0.438 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q psy10868 399 RIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQ 455 (649)
Q Consensus 399 kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~ 455 (649)
.+++|+..|+.+.+=++|.++|..+|.... ---..++.+|.+...+|+.|+..+.
T Consensus 2 ~l~~L~~ki~~E~~i~~Gae~m~~~~~~~~--k~~~~a~~~l~es~~ki~~L~~~L~ 56 (57)
T smart00742 2 RLEDLRRKIEKELKVKEGAENMRKLTSNDR--KVLSEAQSMLRESNQKLDLLKEELE 56 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999995411 0112468889999999999998875
No 140
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=94.27 E-value=6.2 Score=39.06 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=35.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10868 247 RQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFP 288 (649)
Q Consensus 247 ~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~ 288 (649)
+..|...--.++..++=|++.|+..|...|..|.+....+..
T Consensus 150 k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~ 191 (203)
T cd00011 150 RDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFA 191 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667788899999999999999999999999887754
No 141
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.12 E-value=8.1 Score=39.87 Aligned_cols=78 Identities=15% Similarity=0.070 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 62 CKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESD 141 (649)
Q Consensus 62 ~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~ 141 (649)
...-..+.+....+|..-..+. .+|........+.+.+....+.....+.++ ++.....++|+|+.|+..|++.+
T Consensus 66 ~~~~E~~a~~H~~l~~~L~~~~----~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~-~q~~~~~l~kaK~~Y~~~cke~e 140 (261)
T cd07674 66 RVSSDKLALCHLELMRKLNDLI----KDINRYGDEQVKIHKKTKEEAIGTLEAVQS-LQVQSQHLQKSRENYHSKCVEQE 140 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333222 334444444444444444555444444443 56778899999999999999987
Q ss_pred HHH
Q psy10868 142 KAL 144 (649)
Q Consensus 142 ~a~ 144 (649)
.++
T Consensus 141 ~a~ 143 (261)
T cd07674 141 RLR 143 (261)
T ss_pred HHH
Confidence 664
No 142
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=94.11 E-value=7.1 Score=39.12 Aligned_cols=89 Identities=11% Similarity=0.120 Sum_probs=58.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcc---------------cc--cccccHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQ--PKKE---------------EE--DYQYSTC 62 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~--~~~~---------------~~--~~~~t~~ 62 (649)
|.|.|..|.+.++.-.+.+++|..=+. +|-+ +|.++-. ..+. +. ...+.+.
T Consensus 5 l~ddf~~le~~~d~~~~~~~~l~~~~~-------~y~~---~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G 74 (215)
T cd07593 5 LSEEFLELEKEIELRKEGMERLHRSTE-------AYVE---YLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYG 74 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH---HHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHH
Confidence 567888998888888777777654332 2322 3333320 0000 00 0123577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 63 KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKD 100 (649)
Q Consensus 63 ~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e 100 (649)
.+...+-.....+|..+..|...+...++.||..++.+
T Consensus 75 ~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~~ 112 (215)
T cd07593 75 SCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLAE 112 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888889999999999999999999998877543
No 143
>KOG3775|consensus
Probab=93.83 E-value=0.07 Score=55.98 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=49.8
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeeccc
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIAL 646 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~~ 646 (649)
+-+|++-|-+..++||-+..||-|+|-.+. +|-|..+-+...|+.|+||+.|+-.+..
T Consensus 264 THR~~~rFvPRHpDELeLEIgDav~Ve~ea-dD~W~~G~NlRTG~~GIFPA~ya~evd~ 321 (482)
T KOG3775|consen 264 THRAVFRFVPRHPDELELEIGDAVLVEAEA-DDFWFEGFNLRTGERGIFPAFYAHEVDG 321 (482)
T ss_pred hhhhhhhccCCCcceeeeecCCeeEeeecc-cchhhccccccccccccccceeEEecCC
Confidence 458999999999999999999999777655 4589999988877999999999876544
No 144
>KOG0521|consensus
Probab=93.82 E-value=16 Score=43.61 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
.+..|..++.+-+..+..+...=++=+...++|++.|..+..-- . .. . -+..++..+..-+..+...|..+..
T Consensus 29 ~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~--~-~~---~-~~~~~l~~fs~~~~e~~~~~~~L~~ 101 (785)
T KOG0521|consen 29 DAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLG--Q-DE---E-VISETLQKFSKVLRELGTYHTELRS 101 (785)
T ss_pred HHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc--c-Cc---h-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666677777777777777772211 1 11 1 2455666777777778889999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVK 99 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~ 99 (649)
.+...+..||..|.+
T Consensus 102 q~~~~~~~~l~~f~k 116 (785)
T KOG0521|consen 102 QLAHTLSLPLSQFVK 116 (785)
T ss_pred HHHHHHhhhHHHHHH
Confidence 999999999998875
No 145
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=93.55 E-value=9.8 Score=38.88 Aligned_cols=96 Identities=7% Similarity=-0.049 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---------ccccccccHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKK---------EEEDYQYSTCKAFKCVLDEV 72 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~---------~~~~~~~t~~~aw~~ll~e~ 72 (649)
|-|.|..|.++++.-..++.++..=+..-- .=.=+-...++.++|.... .+-...+.+..+...+-...
T Consensus 13 ~~~~~~~le~r~D~~k~~~~~i~k~~~~~l--qpnp~~r~ek~~kk~p~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~ 90 (246)
T cd07618 13 LSEDLLQIERRLDTVRSVSHNVHKRLIACF--QGQVGTDAEKRHKKLPLTALAQNMQEGSAQLGEESLIGKMLDTCGDAE 90 (246)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHhccCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 456899999999988888777644332210 0000001122223331110 01112345777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 73 TDLAGQHEVIAENLQVFIIKEVTIFVK 99 (649)
Q Consensus 73 ~~~A~~H~~lae~L~~~v~~~L~~~~~ 99 (649)
..+|..+...=..+...++.||..+..
T Consensus 91 ~kla~~~~~~d~~ie~~fl~PL~~~le 117 (246)
T cd07618 91 NKLAFELSQHEVLLEKDILDPLNQLAE 117 (246)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 889988888888888899999998864
No 146
>KOG4773|consensus
Probab=93.16 E-value=0.013 Score=60.83 Aligned_cols=55 Identities=18% Similarity=0.443 Sum_probs=47.8
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 587 ~~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
..+.|++||.+....||.+..|+++.++.+++ .+||.+... | -.||+|.+|+..+
T Consensus 176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~e-k~W~~gk~R-~-~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDE-KYWLLGKVR-G-LTGYYPDSFVKQL 230 (386)
T ss_pred HHHHhhccCCCCccceeeeehhhHHHHHhhcc-cceeeeeec-c-ccccccHHhhhhh
Confidence 46689999999999999999999999999875 599998874 3 7899999999754
No 147
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=93.13 E-value=10 Score=37.98 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy10868 250 YTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPI 289 (649)
Q Consensus 250 y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~ 289 (649)
|+..-..+=..|..++.+|+..++..|..|+..+......
T Consensus 167 Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~ 206 (219)
T cd07621 167 FESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKA 206 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445688889999999999999999987766433
No 148
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.03 E-value=12 Score=38.30 Aligned_cols=94 Identities=6% Similarity=-0.005 Sum_probs=57.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhcC-----CcccccccccHHHHHHHHH
Q psy10868 1 VFQDQYDNLSLHTQKGIDFLEKYGHFIRDR------CAIEMEYAGKLRRLVKNYQP-----KKEEEDYQYSTCKAFKCVL 69 (649)
Q Consensus 1 ~L~Dgf~~L~~~~~~gi~~~e~l~~f~keR------a~iE~eYAk~L~kLakk~~~-----~~~~~~~~~t~~~aw~~ll 69 (649)
+|-|.|-.|.++++.-.+.+.++..=+.+- +..|.- +.||.-.... ...+-...+.+..+. .+.
T Consensus 12 ~L~edl~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr----~kKlpe~~Ls~~M~es~keLg~dS~lg~aL-e~~ 86 (257)
T cd07620 12 LLTEDLVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKR----MKKLPLMALSISMAESFKDFDAESSIRRVL-EMC 86 (257)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH----hhhccHhHHHHHHHHHHhhCCCcchHHHHH-HHH
Confidence 356788888888888777766654333221 111111 2232211110 000111234677777 777
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 70 DEV-TDLAGQHEVIAENLQVFIIKEVTIFVK 99 (649)
Q Consensus 70 ~e~-~~~A~~H~~lae~L~~~v~~~L~~~~~ 99 (649)
..+ ..+|..+..+-..+..+|++||..+..
T Consensus 87 ~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e 117 (257)
T cd07620 87 CFMQNMLANILADFEMKVEKDVLQPLNKLSE 117 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 777 899999999999999999999998865
No 149
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=93.03 E-value=10 Score=37.68 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 19 FLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFV 98 (649)
Q Consensus 19 ~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~ 98 (649)
.++-+-+==+.=++-+..|+..|.+|...+.... ++ .+..++..+...+..++..|..+-++++.-|..||..++
T Consensus 24 ~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~d-d~----~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~l 98 (215)
T cd07642 24 SVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRD-DP----DLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLL 98 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-cH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3333444445556778889999999998744221 11 466788888888888999999999999999999999998
Q ss_pred H-HH
Q psy10868 99 K-DF 101 (649)
Q Consensus 99 ~-e~ 101 (649)
+ +.
T Consensus 99 K~dL 102 (215)
T cd07642 99 KGDL 102 (215)
T ss_pred HHHH
Confidence 7 44
No 150
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=92.93 E-value=0.13 Score=40.43 Aligned_cols=36 Identities=19% Similarity=0.688 Sum_probs=29.0
Q ss_pred CCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCcee
Q psy10868 605 MYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642 (649)
Q Consensus 605 ~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~ 642 (649)
+..|+.|.|+... +++|.+++..+| ..||||..++.
T Consensus 27 l~~g~~v~i~~~~-~~~W~~v~~~~g-~~Gwi~~~~~~ 62 (63)
T smart00287 27 LKKGDKVKVLGVD-GQDWAKITYGSG-QRGYVPGYVVN 62 (63)
T ss_pred ecCCCEEEEEEcc-CCceEEEEcCCC-CEEEEEeeeec
Confidence 4689999999865 348999998766 89999887653
No 151
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.88 E-value=11 Score=37.38 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 7 DNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENL 86 (649)
Q Consensus 7 ~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L 86 (649)
+.|..+++.-..-++.|..-=++-+..-.++|+.|.-|+.. +. .+...+..++..+.+-.+.+...|...|.+-
T Consensus 14 ~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~-----E~-~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d 87 (198)
T cd07630 14 TKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGL-----DE-ASVVALNRLCTKLSEALEEAKENIEVVAGNN 87 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cc-cchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333344444445555544431 11 1111567777777777778888888888777
Q ss_pred HHHHHHHHHHHHHHH
Q psy10868 87 QVFIIKEVTIFVKDF 101 (649)
Q Consensus 87 ~~~v~~~L~~~~~e~ 101 (649)
...+..+|..++...
T Consensus 88 ~~~Lg~~L~~Y~r~i 102 (198)
T cd07630 88 ENTLGLTLDLYSRYS 102 (198)
T ss_pred HhhHHHHHHHHHHHH
Confidence 766777777666443
No 152
>KOG4792|consensus
Probab=92.31 E-value=0.69 Score=45.67 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=45.2
Q ss_pred EEEEcCCCCCCC--CCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecccC
Q psy10868 588 TAKALYPFEATS--EGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIALD 647 (649)
Q Consensus 588 ~~~alydf~~~~--~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~~~ 647 (649)
.+++.++-.+.. ..-|.++.||+|.|.... -.|-|.++. +| +.|.||-+||.++...
T Consensus 229 ~Arv~q~RVPnAYDkTaL~levGdiVkVTk~n-inGqwegEl-nG-k~G~fPfThvrf~d~~ 287 (293)
T KOG4792|consen 229 YARVIQKRVPNAYDKTALALEVGDIVKVTKKN-INGQWEGEL-NG-KIGHFPFTHVRFTDVQ 287 (293)
T ss_pred heeeehhcCCCccChhhhhhhcCcEEEEEeec-cCceeeeee-cC-ccccccceeEEeeccC
Confidence 567777655543 346999999999999976 569999998 55 9999999999987543
No 153
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=92.11 E-value=14 Score=37.10 Aligned_cols=97 Identities=5% Similarity=0.038 Sum_probs=64.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCc--------------cccc--ccc
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCA------IEMEYAGKLRRLVKNYQPKK--------------EEED--YQY 59 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~------iE~eYAk~L~kLakk~~~~~--------------~~~~--~~~ 59 (649)
|-+.|..|.++++.-..++.++..=..+-.. +|.---..|.|+-....... .+.+ ..+
T Consensus 5 ld~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS 84 (223)
T cd07614 5 LDDDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDES 84 (223)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCC
Confidence 5678999999999888888877554433211 22222233444322221110 0001 124
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 60 STCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFV 98 (649)
Q Consensus 60 t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~ 98 (649)
.+..+...+-.....+|.....+...+...++.||..++
T Consensus 85 ~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~l 123 (223)
T cd07614 85 NFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC 123 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888999999999999999999999999999886
No 154
>KOG0040|consensus
Probab=92.10 E-value=0.0061 Score=73.04 Aligned_cols=54 Identities=26% Similarity=0.588 Sum_probs=46.6
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
.+.|+|||...++-++++++||+++++... .-.||.|+..+ +.||||..||+.+
T Consensus 970 ~v~alyd~q~kSprev~mKkgDvltll~s~-nkdwwkve~~d--~qg~vpa~yvk~~ 1023 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPREVTMKKGDVLTLLNSI-NKDWWKVEVND--RQGFVPAAYVKRL 1023 (2399)
T ss_pred HHHHHHHHHhcCHHHHHHhhhhHHHHHhhc-ccccccchhhh--hcCcchHHHHHHh
Confidence 367999999999999999999999888755 34899999864 7899999999854
No 155
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.04 E-value=14 Score=36.62 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 6 YDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAEN 85 (649)
Q Consensus 6 f~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~ 85 (649)
|..+..+++.=-.-+..+-.....-..=..+++..|..++..|..-.. .+ ..+..+...+..-++..+..+..+++.
T Consensus 16 F~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~-~E--~~L~~~L~~~~~~~~~~~~~~~~l~~~ 92 (200)
T cd07624 16 FDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSA-SE--TELAPLLEGVSSAVERCTAALEVLLSD 92 (200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554433333333333332222234444444455544432211 01 247889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy10868 86 LQVFIIKEVTIFVKD 100 (649)
Q Consensus 86 L~~~v~~~L~~~~~e 100 (649)
+...+..||+.+..=
T Consensus 93 ~~~~f~e~Lkey~~y 107 (200)
T cd07624 93 HEFVFLPPLREYLLY 107 (200)
T ss_pred HHHHhhHHHHHHHHH
Confidence 988899999988753
No 156
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=91.88 E-value=15 Score=36.83 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=102.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhcCCc--c----------cc--cccccH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDR------CAIEMEYAGKLRRLVKNYQPKK--E----------EE--DYQYST 61 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keR------a~iE~eYAk~L~kLakk~~~~~--~----------~~--~~~~t~ 61 (649)
|-+.|..|.++++.-..++++|..=+.+- +-+|.-.. .|+-++...+. . +. ...+.+
T Consensus 15 ld~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~---~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s~~ 91 (220)
T cd07617 15 LDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLY---EKLDRKVPSRVTNAELLGQYMTEAANDFGPGTPY 91 (220)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHH---HHHhccCCCCCChHHHHHHHHHHHHHhcCCCCch
Confidence 55789999999998888888876544332 11111111 23322221110 0 00 012457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 62 CKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVK----DFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAY 137 (649)
Q Consensus 62 ~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~----e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~ 137 (649)
..|...+-.....+|+....+-..+....+.||..++. +..+.||++. +..=.++..|....++-
T Consensus 92 G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe-----------~rRLd~D~~K~r~~kae 160 (220)
T cd07617 92 GKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQ-----------NRRLDLDACKARLKKAE 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhccH
Confidence 78888888889999999999999999999999998876 3344444443 33335777777777777
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 138 RESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRD 192 (649)
Q Consensus 138 ~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re 192 (649)
.+.+.|+.+|+++.. +-..-+..+.+.+ -+--.+..++-.|.-.|++.|.+
T Consensus 161 ~elr~A~~kf~~~~E-~a~~~M~~il~~~---~e~l~~L~~lv~AQl~Yh~q~~e 211 (220)
T cd07617 161 HELRVAQTEFDRQAE-VTRLLLEGISSTH---VNHLRCLHEFVEAQATYYAQCYR 211 (220)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887653 2111111111110 01112234455666777776654
No 157
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=91.87 E-value=15 Score=36.93 Aligned_cols=97 Identities=10% Similarity=0.158 Sum_probs=62.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcCCc----cc----------cc--ccc
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRC------AIEMEYAGKLRRLVKNYQPKK----EE----------ED--YQY 59 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa------~iE~eYAk~L~kLakk~~~~~----~~----------~~--~~~ 59 (649)
|-|.|..|.++++.-..++++|..=+..-. -++..-.+.+.|+-.+-..++ .+ .+ ..+
T Consensus 5 ld~df~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S 84 (223)
T cd07592 5 LDDEFLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDS 84 (223)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCC
Confidence 567899999988887777777654332221 122222344555522211110 00 00 124
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 60 STCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFV 98 (649)
Q Consensus 60 t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~ 98 (649)
.+..+...+-.....+|.....+...+...++.||..+.
T Consensus 85 ~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l 123 (223)
T cd07592 85 NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQ 123 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888999999999999999999999999873
No 158
>PRK11637 AmiB activator; Provisional
Probab=91.37 E-value=27 Score=38.76 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=4.7
Q ss_pred CCCCCCCCEE
Q psy10868 602 SIPMYDGEEL 611 (649)
Q Consensus 602 els~~~ge~l 611 (649)
.+.+..|+.|
T Consensus 380 ~~~v~~G~~V 389 (428)
T PRK11637 380 SALVSVGAQV 389 (428)
T ss_pred cCCCCCcCEE
Confidence 3445555544
No 159
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=91.35 E-value=13 Score=35.16 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 257 VFAQLQELDEKRVRNIRNFMVHSANIEKKV 286 (649)
Q Consensus 257 i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~ 286 (649)
++..|..+...+...+...|..|+.....+
T Consensus 151 ~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~ 180 (194)
T cd07307 151 LIEDLNKLEEKRKELFLSLLLSFIEAQSEF 180 (194)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444455556666667777777777775444
No 160
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.25 E-value=51 Score=41.74 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q psy10868 93 EVTIFVKDFKEERKKHLQ----DGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAE 160 (649)
Q Consensus 93 ~L~~~~~e~~~~rK~~~~----~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~ 160 (649)
.+..-++..+..++.+.. ........+-....+++.++..+..+...+.++..+|+.....|+.....
T Consensus 324 ~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~ 395 (1201)
T PF12128_consen 324 RIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR 395 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433 22222333344555777788888888888888888888777666555543
No 161
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=91.15 E-value=17 Score=35.96 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=40.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q psy10868 247 RQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAAD 302 (649)
Q Consensus 247 ~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~ 302 (649)
+..|..--..++..+.-|++.|+..|...|..+.+..+... ..|...|...+.
T Consensus 147 k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~---sgn~~~L~~~~~ 199 (201)
T cd07660 147 KDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYF---SGNQKQLEQTLK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHh
Confidence 45566666778899999999999999999999999877763 455555555543
No 162
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=90.98 E-value=17 Score=35.72 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 28 RDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKD 100 (649)
Q Consensus 28 keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e 100 (649)
---.+=|..|+..|.+|-....... . .-+..+|-.+..-+..++..-..+.++|++-|.=||..++++
T Consensus 33 ~~hv~ne~~~~~~le~lg~~~l~~~-~----~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~ 100 (213)
T cd07640 33 LNHVENEEQYTEALENLGNSHLSQN-N----HELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKG 100 (213)
T ss_pred HHHHhHHHHHHHHHHHHhhhhhcCC-C----cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHH
Confidence 3445678899999999998876542 1 257889999989999999999999999998888899999874
No 163
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.86 E-value=36 Score=39.27 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Q psy10868 194 DKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRV 269 (649)
Q Consensus 194 e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri 269 (649)
..+...+..++.+...-..++..+...-.+-...+...+..|...-..+.+. +.-|...+|.+-+.|..++...-
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~-~~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAH-SFSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhchhHHHHHHHHHHHHHHHH
Confidence 3333344444444433344555555555556667777888887777777766 67788888888887777666443
No 164
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=90.67 E-value=22 Score=36.57 Aligned_cols=125 Identities=13% Similarity=0.220 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHH
Q psy10868 170 KILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIK-------SQHCEDTKTEYANQLQRA 242 (649)
Q Consensus 170 k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~-------~~~~~~ak~eY~~~l~~~ 242 (649)
+........+.++.+.+...++.+++++.+|..+.... +.+..+++.. ..+++++++.+..+-..+
T Consensus 112 ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~-------e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~ 184 (258)
T cd07655 112 KETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAE-------KSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEV 184 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHH
Confidence 34445556677777778888888999999888876543 3333333322 245667777777777777
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhCh
Q psy10868 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINE 306 (649)
Q Consensus 243 N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~ 306 (649)
+.. ...|...+-.+ +.++ ..-...|..++..+..++..-...+...+-.+...++-.+.
T Consensus 185 ~~~-~~~Y~~~l~~~-n~~~---~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l~~~~~ 243 (258)
T cd07655 185 SKT-KDKYEKALEDL-NKYN---PRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHLDLSTN 243 (258)
T ss_pred HHH-HHHHHHHHHHH-Hhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777 44555544433 3333 45677888999999999888888887777777777654443
No 165
>KOG0161|consensus
Probab=89.55 E-value=82 Score=41.39 Aligned_cols=69 Identities=26% Similarity=0.417 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEE 463 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e 463 (649)
+++++.++..|+.++..++.+.+.+.++.+.+.-++ ||...++-++.++.+..+-+.-.+.+++..+.+
T Consensus 1575 E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle-----~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~ 1643 (1930)
T KOG0161|consen 1575 EELRKNLQRQLESLQAELEAETRSKSEALRSKKKLE-----GDINELEIQLDHANKANEDAQKQLKKLQAQLKE 1643 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhh-----cchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Confidence 567888888899888899988888888887776332 666667666666666555555555555554443
No 166
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.55 E-value=76 Score=40.97 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESA-------AREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEE 463 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~-------~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e 463 (649)
+|+..+++++++|...|.+... .-+.|.+|..-+. -.+-|...|..-+-..-.+.-.+..+..+++..+..
T Consensus 579 ~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g--~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~ 656 (1486)
T PRK04863 579 ERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSG--EEFEDSQDVTEYMQQLLERERELTVERDELAARKQA 656 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcc--hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777666666554 5577777766653 233555666444333333444444444444444444
Q ss_pred hh
Q psy10868 464 SE 465 (649)
Q Consensus 464 ~~ 465 (649)
++
T Consensus 657 L~ 658 (1486)
T PRK04863 657 LD 658 (1486)
T ss_pred HH
Confidence 43
No 167
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=89.49 E-value=28 Score=35.84 Aligned_cols=232 Identities=14% Similarity=0.197 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------ccc-cccccc----HHHHHHHHHHHH
Q psy10868 6 YDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPK--------KEE-EDYQYS----TCKAFKCVLDEV 72 (649)
Q Consensus 6 f~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~--------~~~-~~~~~t----~~~aw~~ll~e~ 72 (649)
.+-|....+-..+-.+.-.+|-+++++|...|..+..+++..+... ..+ --..++ +...-..+-.+-
T Consensus 7 ~~~LqDiqqFyreRs~IEkEYS~kL~kL~kky~~Kk~k~ss~lsvgd~p~~tpgsle~~~S~~~~W~~~L~~Te~~A~~~ 86 (260)
T cd07677 7 MTKLQAKHQAECKLLEDEREFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADERADYRSMYTVWKSFLEGTMQVAQSR 86 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCccCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555667888999999999999998888765533 112 111222 222223333333
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 73 TDLAGQHE-VIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRAD 151 (649)
Q Consensus 73 ~~~A~~H~-~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~ 151 (649)
..+|+.-. .+++.+ .-++....++.+.-......+.+-. ...+.+|.|+|+.|+..+.....++.+-+-..
T Consensus 87 ~~~ae~l~~~~a~~~-----k~~r~~ke~~~Kk~~e~~~~lq~El---~~~~~EL~KaKK~Y~~~cq~~e~~ReK~~~e~ 158 (260)
T cd07677 87 INICENYKNLISEPA-----RTVRLYKEQQLKRCVDQLTKIQAEL---QETVKDLAKGKKKYFETEQMAHAVREKADIEA 158 (260)
T ss_pred HHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33333222 222222 2222222222222222222222211 35678899999999999998887766543110
Q ss_pred hhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHh
Q psy10868 152 ADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDT 231 (649)
Q Consensus 152 ~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~a 231 (649)
.++..-+ +. ...++|..++... + ..+.+ ...-++++.|--+...++..
T Consensus 159 ----K~~~s~~-------qs----~~slqK~~~K~~~----------k--~~e~n-----~k~~~ARNeYLl~L~aaNa~ 206 (260)
T cd07677 159 ----KSKLSLF-------QS----RISLQKASVKLKA----------R--RSECN-----SKATHARNDYLLTLAAANAH 206 (260)
T ss_pred ----hcccccc-------cc----cchHHHHHHHHHH----------H--HHHHH-----HHHHhhhHHHHHHHHHHHHH
Confidence 0000000 00 0011121111110 0 01111 12246777777777777777
Q ss_pred HHHH-HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 232 KTEY-ANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMV 277 (649)
Q Consensus 232 k~eY-~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~ 277 (649)
.+-| ..-|-..=....-.|...+.+.+..|=..|.+-.....+.|.
T Consensus 207 ~~kYY~~DLp~l~~~~d~~~~~~~~~~l~~~~~~el~~~~~~~~~f~ 253 (260)
T cd07677 207 QDRYYQTDLVNIMKALDGNVYDHLKDYLMAFSRTELETCQAVQNTFQ 253 (260)
T ss_pred HHHhhhccHHHHHHHhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7777 344444444446677777888877776666655555544443
No 168
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=88.55 E-value=31 Score=35.27 Aligned_cols=96 Identities=5% Similarity=-0.042 Sum_probs=61.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---------ccccccccHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKK---------EEEDYQYSTCKAFKCVLDEV 72 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~---------~~~~~~~t~~~aw~~ll~e~ 72 (649)
|-|.|..|.++++.-..++.++..=+..-- .=.=+-...|..++|-... .+-...+.+..+...+-...
T Consensus 13 ld~~~~~le~r~D~~k~~~~~i~kk~~~~L--Qpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg~~s~lg~aL~~~gea~ 90 (248)
T cd07619 13 LSEDLLQVEKRLELVKQVSHSTHKKLTACL--QGQQGVDADKRSKKLPLTTLAQCMVEGAAVLGDDSLLGKMLKLCGETE 90 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHhccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 567899999999888877776643332210 0000111113333332110 00012346888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 73 TDLAGQHEVIAENLQVFIIKEVTIFVK 99 (649)
Q Consensus 73 ~~~A~~H~~lae~L~~~v~~~L~~~~~ 99 (649)
..+|..+..+-..+...++.||..+..
T Consensus 91 ~kla~a~~~~d~~i~~~fl~PL~~~le 117 (248)
T cd07619 91 DKLAQELILFELQIERDVVEPLYVLAE 117 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 169
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.29 E-value=33 Score=35.25 Aligned_cols=89 Identities=9% Similarity=0.150 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 213 EVEKQRINMAIKSQHCEDTK------TEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKV 286 (649)
Q Consensus 213 eleK~~~k~~~~~~~~~~ak------~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~ 286 (649)
.++|++.+|...+.+.+.++ .+-...-.++++.. .-|. ..++.++..-......|..++..+..++..-
T Consensus 124 ~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~-~~Y~----~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~R 198 (261)
T cd07648 124 ALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQ-DEYK----ALVEKYNNIRADFETKMTDSCKRFQEIEESH 198 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444332 22223333334442 2333 3445555556667788888888889998888
Q ss_pred hcchHHHHHHHHHHHHhhCh
Q psy10868 287 FPIINQCLDGIIKAADQINE 306 (649)
Q Consensus 287 ~~~~~~~~~~l~~~~~~Id~ 306 (649)
...+...+-.+...+..+.+
T Consensus 199 i~~~k~~l~~y~~~~~~~~~ 218 (261)
T cd07648 199 LRQMKEFLASYAEVLSENHS 218 (261)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 88888888888888777755
No 170
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=88.23 E-value=29 Score=34.48 Aligned_cols=67 Identities=12% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHh
Q psy10868 186 YEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQ 252 (649)
Q Consensus 186 Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~ 252 (649)
|...++.+-.+...+-..-.+-..+..+|+..-..+...-..+......|...+..+|.....+|..
T Consensus 134 l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~y~~ 200 (204)
T PF10368_consen 134 LYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEKQDFYKK 200 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444434443443333344556678888888888888889999999999999999998888764
No 171
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=87.82 E-value=33 Score=34.62 Aligned_cols=69 Identities=9% Similarity=0.256 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q psy10868 220 NMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIK 299 (649)
Q Consensus 220 k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~ 299 (649)
++.++..++..|+++|.. + +..-.++||.+++ -|+.++-..|..+..+...++. ..+..|..
T Consensus 145 kL~kae~el~~a~~~Ye~----l----N~~Lk~ELP~l~~-------~r~~~l~~~f~s~~~iQ~~~~~---~~y~~l~~ 206 (224)
T cd07591 145 KLPRAEKELDEAKEVYET----L----NDQLKTELPQLVD-------LRIPYLDPSFEAFVKIQLRFFT---EGYERLAQ 206 (224)
T ss_pred HHHHHHHHHHHHHHHHHH----H----HHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344455566777777732 2 3445567887755 4677777788887777766643 34455555
Q ss_pred HHHhhCh
Q psy10868 300 AADQINE 306 (649)
Q Consensus 300 ~~~~Id~ 306 (649)
....+++
T Consensus 207 ~~~~~~~ 213 (224)
T cd07591 207 VQRYLDA 213 (224)
T ss_pred HHhhcch
Confidence 5555544
No 172
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=87.80 E-value=37 Score=35.18 Aligned_cols=63 Identities=8% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHH-HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 215 EKQRINMAIKSQHCEDTKTEYA-NQL-QRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVH 278 (649)
Q Consensus 215 eK~~~k~~~~~~~~~~ak~eY~-~~l-~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~ 278 (649)
.++++.|-.....++.....|. ..| .-++.+ ..-|...|..++..|=+.|.+-.....+.+..
T Consensus 194 ~~akNeYll~L~~aN~~q~kYY~~dLP~lld~l-d~~~~~~l~~~l~~~~~~e~~~~~~~~~~~~~ 258 (264)
T cd07654 194 TAARNDYLLNLAATNAHQDRYYQTDLPAIIKAL-DGELYDHLKDFLISLSHTELETAQVIQETFQR 258 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666663 222 333444 67777788888888877777766666555543
No 173
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=87.28 E-value=35 Score=34.37 Aligned_cols=96 Identities=5% Similarity=0.068 Sum_probs=65.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhcCCcc---------------ccc--cc
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDR------CAIEMEYAGKLRRLVKNYQPKKE---------------EED--YQ 58 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keR------a~iE~eYAk~L~kLakk~~~~~~---------------~~~--~~ 58 (649)
|-+.|..|.++++.-..+++++..=+.+- +-++.-.-+.+.|+- .-.+... +.+ ..
T Consensus 5 ld~~f~~le~k~D~t~~~~~~i~~~t~~~LQPNpa~r~k~~~~~~~~K~~-g~~K~~~~p~~~~~Lg~~M~~~G~elg~d 83 (223)
T cd07613 5 LDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIR-GQEKGPGYPQAEALLAEAMLKFGRELGDE 83 (223)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhh-ccccCCCCCChHhHHHHHHHHHHhhCCCC
Confidence 55789999999999998888876544331 223333344555651 1111100 000 12
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 59 YSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFV 98 (649)
Q Consensus 59 ~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~ 98 (649)
+.+..+...+-.....+|.....+...+...++.||..+.
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~ 123 (223)
T cd07613 84 CNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLH 123 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888889999999999999999999999999864
No 174
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=87.15 E-value=34 Score=34.10 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHL 109 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~ 109 (649)
+.+...|+.|+..+..-....+|.+.
T Consensus 92 ~~i~~~V~~P~~~~~~~~~~i~k~Ik 117 (216)
T cd07599 92 EFFEERVILPAKELKKYIKKIRKTIK 117 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778889999988876665555554
No 175
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=86.89 E-value=37 Score=34.24 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHh
Q psy10868 192 DADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQ 252 (649)
Q Consensus 192 e~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~ 252 (649)
+.++++.++.+...........+.|++..++.+....+.....-..-|=.+-.....++..
T Consensus 124 DYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~ 184 (224)
T cd07591 124 DYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDP 184 (224)
T ss_pred hHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444443332234467888888888888888888888877777776665544433
No 176
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=86.86 E-value=33 Score=33.62 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy10868 174 NQVDALERALKNYEKAFRDADKALEHYKRADA 205 (649)
Q Consensus 174 ~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~ 205 (649)
..++.+.+.++++++..-+.+.++.++.++..
T Consensus 128 ~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~ 159 (229)
T PF03114_consen 128 KEFKEIKKLIKKREKKRLDYDSARSKLEKLRK 159 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666655566666666555543
No 177
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=86.78 E-value=38 Score=34.28 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=61.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHh--hcCCc--------ccc--cccccHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRD------RCAIEMEYAGKLRRLVKN--YQPKK--------EEE--DYQYSTCK 63 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~ke------Ra~iE~eYAk~L~kLakk--~~~~~--------~~~--~~~~t~~~ 63 (649)
|-|.|..|.++++.-..++++|..=+.. -+-+|.--.++|.+ .++ +.+.- .+. ...+.+..
T Consensus 15 ~d~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~-~~~~~~~~~e~Lg~~M~~~g~~lg~~S~~g~ 93 (229)
T cd07594 15 YDAHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDR-KKPDRLSNLEQLGQAMIEAGNDFGPGTAYGS 93 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhc-ccCCCCCcHHHHHHHHHHHHhhCCCCCchHH
Confidence 5678899998888877777776543322 12233332233320 000 00000 000 12346788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 64 AFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVK 99 (649)
Q Consensus 64 aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~ 99 (649)
+...+-.....+|.....+...+...++.||..++.
T Consensus 94 aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~ 129 (229)
T cd07594 94 ALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLE 129 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999998875
No 178
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.47 E-value=70 Score=37.01 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 8 NLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-EEDYQYSTCKAFKCVLDEVTDLAGQHEVI 82 (649)
Q Consensus 8 ~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~-~~~~~~t~~~aw~~ll~e~~~~A~~H~~l 82 (649)
.+...++.--.-++.+..-+.+-...|.+-......|-.+|..-+. -....+++..||..+=..+..+-.....|
T Consensus 109 ~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f 184 (569)
T PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQF 184 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 3444444455555667777777778888888877777777765421 01123455566655544444444443333
No 179
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.29 E-value=42 Score=34.29 Aligned_cols=67 Identities=18% Similarity=0.115 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 59 YSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVK----DFKEERKKHLQDGARMMNLLENQVIALERARKNYD 134 (649)
Q Consensus 59 ~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~----e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~ 134 (649)
+.+..++..+-.-...+|+.+..+-..+....+.||..++. +..+.||++. +..=.++-+|..+.
T Consensus 103 s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle-----------~~RLd~D~~K~~~~ 171 (242)
T cd07600 103 DPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVE-----------DKRLQLDTARAELK 171 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 35788888888888889998888888888889999888876 3334444443 33334666666665
Q ss_pred HH
Q psy10868 135 KA 136 (649)
Q Consensus 135 ~~ 136 (649)
++
T Consensus 172 ka 173 (242)
T cd07600 172 SA 173 (242)
T ss_pred hc
Confidence 44
No 180
>KOG0199|consensus
Probab=85.50 E-value=0.94 Score=52.01 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=41.0
Q ss_pred EcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceee
Q psy10868 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 591 alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
|..+|+...+|-|-|++||.|.||+.....-||++.+..+...|.||.+-|..
T Consensus 379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 33344556699999999999999996532249999776666899999998873
No 181
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.36 E-value=1.2e+02 Score=38.60 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhcC
Q psy10868 38 AGKLRRLVKNYQP 50 (649)
Q Consensus 38 Ak~L~kLakk~~~ 50 (649)
++.|+.|+.+|.=
T Consensus 161 ~~~lr~la~~fSL 173 (1201)
T PF12128_consen 161 RKELRALAARFSL 173 (1201)
T ss_pred chHHHHHHHhcCc
Confidence 4678888888754
No 182
>KOG0994|consensus
Probab=85.34 E-value=1e+02 Score=37.92 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy10868 170 KILRNQVDALERALKNYEKAFR 191 (649)
Q Consensus 170 k~l~~~~~~l~KaKk~Y~~~~r 191 (649)
+.+.+....|++.|.+|..-..
T Consensus 1619 q~~~eL~~~~e~lk~~~~qns~ 1640 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSA 1640 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhccH
Confidence 3444444445555555544333
No 183
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=85.01 E-value=47 Score=33.74 Aligned_cols=59 Identities=10% Similarity=0.233 Sum_probs=43.2
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 227 HCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKV 286 (649)
Q Consensus 227 ~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~ 286 (649)
++..+..++...-.+.... +..|+..-..+-..|..++.+|+..|++.+..|.......
T Consensus 160 K~~~a~~Ev~e~e~k~~~a-~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~ 218 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQY-ERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHS 218 (234)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556665555555555 5567777777778899999999999999999998774443
No 184
>KOG0994|consensus
Probab=84.99 E-value=1.1e+02 Score=37.80 Aligned_cols=25 Identities=4% Similarity=0.058 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAR 414 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~ 414 (649)
+|++....+.|..|++.++...+.+
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4566666666666666666555444
No 185
>KOG0250|consensus
Probab=84.44 E-value=1.1e+02 Score=37.49 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy10868 93 EVTIFVKDFKEER---KKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADL 154 (649)
Q Consensus 93 ~L~~~~~e~~~~r---K~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l 154 (649)
.+.......+..| +.+...+..+......+-.+++-+++..+.+-++..+++..|..+|+.+
T Consensus 303 ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i 367 (1074)
T KOG0250|consen 303 KIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSI 367 (1074)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455 4455555555555555556777777777777777777777777776544
No 186
>KOG0933|consensus
Probab=83.82 E-value=1.1e+02 Score=37.10 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 436 IEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 436 ~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
++.+..++..++..+...--|++..++.++.
T Consensus 992 ~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe 1022 (1174)
T KOG0933|consen 992 AEEKEAALKTKKEIIEKDKSKIKKTIEKLDE 1022 (1174)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4666667777777777766666666665554
No 187
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=83.59 E-value=55 Score=33.38 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 124 IALERARKNYDKAYRESDKALEHYK 148 (649)
Q Consensus 124 ~~l~k~kk~y~~~~~e~~~a~~~~~ 148 (649)
..+.++|+.|+..|++.+.|...+.
T Consensus 121 k~~~ksKk~Ye~~Cke~~~a~~~~~ 145 (240)
T cd07672 121 KKTMESKKNYEQKCRDKDEAEQAVN 145 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999877766554
No 188
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=83.32 E-value=1.4 Score=33.73 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=27.5
Q ss_pred CCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCce
Q psy10868 604 PMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641 (649)
Q Consensus 604 s~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv 641 (649)
.+.+|..+.|++.. .+|.+++ .+| ..|||+.+.|
T Consensus 20 ~l~~g~~v~v~~~~--~~W~~V~-~~g-~~GWv~~~~l 53 (55)
T PF06347_consen 20 RLEPGVPVRVIECR--GGWCKVR-ADG-RTGWVHKSLL 53 (55)
T ss_pred EECCCCEEEEEEcc--CCeEEEE-ECC-eEEeEEeeec
Confidence 35788999998754 4899999 676 8999998875
No 189
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=83.06 E-value=1.2 Score=43.96 Aligned_cols=40 Identities=15% Similarity=0.438 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeec
Q psy10868 604 PMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644 (649)
Q Consensus 604 s~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~ 644 (649)
+++.||.+.|+..+...||..++..+| +.||||+.++...
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g-~t~wi~~~~lt~e 88 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSG-RTGWILSKNLTSE 88 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCC-ceEEEechhhccc
Confidence 569999999999885448999999887 9999999988643
No 190
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=82.60 E-value=57 Score=32.81 Aligned_cols=89 Identities=6% Similarity=0.076 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
.++.+...+..|.++...+.... ..=..|.-.++|++.-........ --+..+...+..-...+=..+..+..
T Consensus 20 s~P~~~d~v~ka~K~~saL~a~~----~A~~~f~Da~qKvad~A~~s~GaS---kElG~~Ltri~~~hr~iE~~lk~f~~ 92 (231)
T cd07643 20 SYPLWEDFVSKATKLHSQLRATI----VATSAFLDAFQKIADAATNTRGAT---KEIGSALTRMCMRHKSIETKLKQFTS 92 (231)
T ss_pred CCccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666664443 233467778888876654432100 02444444444444444455666777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKD 100 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e 100 (649)
.|.++.+-||..-+.+
T Consensus 93 ~L~~~lI~pLe~k~E~ 108 (231)
T cd07643 93 ALMDCLVNPLQEKIEE 108 (231)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 7777777777666544
No 191
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=81.78 E-value=61 Score=32.65 Aligned_cols=97 Identities=6% Similarity=0.102 Sum_probs=63.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCc--c------------cc--cccc
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCA------IEMEYAGKLRRLVKNYQPKK--E------------EE--DYQY 59 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~------iE~eYAk~L~kLakk~~~~~--~------------~~--~~~~ 59 (649)
|-|.|..|.++++.-..++++|..=+..-.. +|.-.-..|.|+-.+..... . +. ...+
T Consensus 5 ld~~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS 84 (223)
T cd07615 5 LDDDFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGEES 84 (223)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCCCC
Confidence 6688999999998888887777543332211 23322234454321211000 0 00 0124
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 60 STCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFV 98 (649)
Q Consensus 60 t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~ 98 (649)
.+..+...+-.....+|.....+...+...++.||..+.
T Consensus 85 ~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l 123 (223)
T cd07615 85 TFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQ 123 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888899999999999999999999999999774
No 192
>KOG2996|consensus
Probab=81.78 E-value=0.77 Score=51.08 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=36.2
Q ss_pred CCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceee
Q psy10868 602 SIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 602 els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
-|.+++|++|.++.-+.+..||.++....+..||+|++-|.+
T Consensus 626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp 667 (865)
T KOG2996|consen 626 RLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKP 667 (865)
T ss_pred ceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCc
Confidence 478899999999988877789999987766789999998874
No 193
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=81.61 E-value=63 Score=32.66 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhHHHHHhhH
Q psy10868 176 VDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAI-KSQHCEDTKTEYANQLQRANEMQRQHYTQAM 254 (649)
Q Consensus 176 ~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~-~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~m 254 (649)
...+.++.+........+++++.+|..+..++. .++.+... ...+++++..-|..+-...|.. +..|...+
T Consensus 106 ~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e-------~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~-~~~Y~~~v 177 (236)
T cd07651 106 QSHMEKLLKKKQDQEKYLEKAREKYEADCSKIN-------SYTLQSQLTWGKELEKNNAKLNKAQSSINSS-RRDYQNAV 177 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHcccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 344556666666777788888888887776543 22221111 1134567777777777777777 44444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhH
Q psy10868 255 PEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKED 309 (649)
Q Consensus 255 p~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D 309 (649)
+.++..-......|..++..+..++..-...+...+-.....++.+=...|
T Consensus 178 ----~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv~~d 228 (236)
T cd07651 178 ----KALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCVDDD 228 (236)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 344555556778888889999999888877777766666666666544444
No 194
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.57 E-value=55 Score=31.92 Aligned_cols=92 Identities=9% Similarity=0.114 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 6 YDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAEN 85 (649)
Q Consensus 6 f~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~ 85 (649)
|..+..+++.=-.-+..+-..+..-..=..+++..+..++..+..-.. .+.+ ++..++..+..-+...|.....+++.
T Consensus 6 F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~-~E~~-~L~~~l~~~~~~~~~~s~~~~~l~~~ 83 (185)
T cd07628 6 FLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGS-LESG-EITEPFKIFSESLSQFSTSLRVLNKY 83 (185)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCch-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333333333334444444455544432211 0112 48889988888889999999999998
Q ss_pred HHHHHHHHHHHHHH
Q psy10868 86 LQVFIIKEVTIFVK 99 (649)
Q Consensus 86 L~~~v~~~L~~~~~ 99 (649)
+......||+.+..
T Consensus 84 ~~~~f~~~Lkd~~~ 97 (185)
T cd07628 84 TDENYLTSLKDLLH 97 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888764
No 195
>KOG2129|consensus
Probab=80.85 E-value=90 Score=33.97 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy10868 212 AEVEKQRINMAIKSQHCEDTKTEYANQLQRANEM 245 (649)
Q Consensus 212 ~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~ 245 (649)
.-++|+++.+......+..|..+|...++.+-+.
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~E 286 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAE 286 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888889999998888888766
No 196
>KOG2398|consensus
Probab=80.57 E-value=1.2e+02 Score=35.29 Aligned_cols=42 Identities=12% Similarity=-0.101 Sum_probs=25.9
Q ss_pred CCccEEEEcCC-CCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEe
Q psy10868 584 PPLGTAKALYP-FEATSEGSIPMYDGEELYIIELDQGDGWTRVRR 627 (649)
Q Consensus 584 ~~~~~~~alyd-f~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~ 627 (649)
+++..+.+.|. +....+++. +..|+.+.+...-. .||.....
T Consensus 549 ~~i~~a~~~~~~~~~~~~~~s-~~~~~~~~~~~s~~-~~i~~~~~ 591 (611)
T KOG2398|consen 549 LPIAAAFAEIVHAYFEGPDES-CIVKDTGEMMLSFP-AGITGLVA 591 (611)
T ss_pred chhhhhhhhcchhhhcCCCcc-eeeeeeEEEEEeec-cchhhhhc
Confidence 34555555543 333445666 99999998888653 37655554
No 197
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=80.03 E-value=68 Score=32.08 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=32.0
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10868 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFP 288 (649)
Q Consensus 239 l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~ 288 (649)
+...+.. ...++...-..+...-..|+.|+.+|-+.+..++..+..+..
T Consensus 147 ~~~v~~~-~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~ 195 (219)
T PF08397_consen 147 LQDVTER-QSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHN 195 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 334444555556666667888999888888888877766643
No 198
>KOG0018|consensus
Probab=77.65 E-value=1.8e+02 Score=35.63 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=27.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 383 DFSNLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGV 423 (649)
Q Consensus 383 d~~~lp~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~ 423 (649)
||+.||.+=+ |+++|++++..|++-.=-..++.+|-.|
T Consensus 924 dy~~L~~~y~---L~~kl~e~~~~l~~~~Pn~kA~~~~d~v 961 (1141)
T KOG0018|consen 924 DYSGLPREYK---LQQKLEEKQSVLNRIAPNLKALERLDEV 961 (1141)
T ss_pred ccccccHHHH---HHHHHHHHHHHHHHhCcchHHHhhhhhH
Confidence 8888987766 9999999999888865444555554444
No 199
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=77.18 E-value=91 Score=31.91 Aligned_cols=38 Identities=3% Similarity=0.160 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q psy10868 264 LDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA 301 (649)
Q Consensus 264 lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~ 301 (649)
-|.+.+..|.+++..-..+.......+......|...+
T Consensus 191 ~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~ 228 (244)
T cd07595 191 KEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQI 228 (244)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655555554444444444444333
No 200
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.08 E-value=91 Score=32.12 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10868 398 QRIEEIQHSIQQESAAREGLI 418 (649)
Q Consensus 398 ~kl~el~~~i~k~~~~~~gl~ 418 (649)
.++++|+....++..+|..|+
T Consensus 162 sk~e~L~ekynkeveerkrle 182 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLE 182 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHH
Confidence 356666655555555554443
No 201
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=76.92 E-value=85 Score=31.45 Aligned_cols=94 Identities=20% Similarity=0.152 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--cccccccccHHHHHHHHHHHHHHHHHHH
Q psy10868 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPK--KEEEDYQYSTCKAFKCVLDEVTDLAGQH 79 (649)
Q Consensus 2 L~Dgf~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~--~~~~~~~~t~~~aw~~ll~e~~~~A~~H 79 (649)
|-+|.+.|.+.++.-+.+|+.+..- -.++|.-...=|..+.-.+... .-+.+| | ..+...+.+.+.++....
T Consensus 6 f~~Qi~~iE~Wl~~~~~~~~k~~~~---~~~~e~~~nsfl~~~~p~~~~s~~vidqdY--T-~~al~~f~~~l~e~~~~l 79 (214)
T cd07609 6 FDDQVDAIEKWLDGYVSSTKKLYSS---LDELERVINSFLSHLLPPLLVSGGVIDQDY--T-PLALKRFGDGLKDFWGGV 79 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCccccccchhCchh--H-HHHHHHHHHHHHHHHHHH
Confidence 3467778887777777776666553 3344444333333333211100 011122 1 112233333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10868 80 EVIAENLQVFIIKEVTIFVKDF 101 (649)
Q Consensus 80 ~~lae~L~~~v~~~L~~~~~e~ 101 (649)
...+.....-+++||..|+++.
T Consensus 80 l~~~~~~~~~~~~pL~~f~k~~ 101 (214)
T cd07609 80 LSALKGNDSLILDPLRSFVKSD 101 (214)
T ss_pred HHHHhcchHHHHHHHHHHHHHH
Confidence 4444444455778888887654
No 202
>KOG4674|consensus
Probab=76.80 E-value=2.5e+02 Score=36.77 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhCCCCCCh-hhhhhhHHHHHHHHHHHHHHHH
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESAAR--------------EGLIKMKGVYEDNPNLGDP-HMIEGQLSETDSRLEKLRGELQ 455 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~~~--------------~gl~km~~~y~~np~~gd~-~~~~~~l~e~~~~l~~l~~~~~ 455 (649)
|+...+++.+++|+..+...+... .++.-|--.|..|-.|-.. .....++.|+..+|+.|++++.
T Consensus 1181 qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~ 1260 (1822)
T KOG4674|consen 1181 QQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELA 1260 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 334445555555555555444433 2233333334444444322 2346677788888888888888
Q ss_pred HHHHHHHHhhh
Q psy10868 456 KYQTYMEESEA 466 (649)
Q Consensus 456 kl~~~l~e~~~ 466 (649)
-|++.|.++..
T Consensus 1261 plq~~l~el~~ 1271 (1822)
T KOG4674|consen 1261 PLQNELKELKA 1271 (1822)
T ss_pred hHHHHHHHHHH
Confidence 88888877665
No 203
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=76.15 E-value=2.5 Score=47.00 Aligned_cols=38 Identities=18% Similarity=0.566 Sum_probs=31.0
Q ss_pred CCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceee
Q psy10868 604 PMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643 (649)
Q Consensus 604 s~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~ 643 (649)
++..|+.|.|+...+ .||++++..+| ++|||-+.||.-
T Consensus 104 sl~~G~~V~Vl~~~~-ngW~kI~~~~G-ktGwV~~~YLs~ 141 (481)
T PRK13914 104 SIKGGTKVTVETTES-NGWHKITYNDG-KTGFVNGKYLTD 141 (481)
T ss_pred eecCCCEEEEeeccc-CCeEEEEcCCC-CEEEEecccccC
Confidence 468999999975332 48999998777 999999999873
No 204
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=75.76 E-value=87 Score=31.00 Aligned_cols=80 Identities=6% Similarity=0.047 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCA-IE----MEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQ 78 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e~l~~f~keRa~-iE----~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~ 78 (649)
|+|....+.++.+++.+-.+..=+-+|.. .= ...++.+..|++.|.-.. .....++..|...+-+..+.++..
T Consensus 7 d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~--~~~~t~Ls~Al~~~g~~~e~Ig~l 84 (199)
T cd07626 7 DAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDE--TPTSVPLTQAIKHTGQAYEEIGEL 84 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CccchHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776666555544442 11 223445666666654321 112336788877777777777777
Q ss_pred HHHHHHH
Q psy10868 79 HEVIAEN 85 (649)
Q Consensus 79 H~~lae~ 85 (649)
|..-+..
T Consensus 85 ~~eQa~~ 91 (199)
T cd07626 85 FAEQPKH 91 (199)
T ss_pred HHHhhHh
Confidence 7766654
No 205
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.31 E-value=1e+02 Score=31.54 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10868 259 AQLQELDEKRVRNIRNFMVHSANIEKKVFP 288 (649)
Q Consensus 259 ~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~ 288 (649)
..++..+++|...|+.+|..|+.....++.
T Consensus 202 ~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~ 231 (243)
T cd07666 202 ADWERWKQNMQTDLRSAFTDMAENNISYYE 231 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677889999999999999888666543
No 206
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=75.05 E-value=98 Score=31.23 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 9 LSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQV 88 (649)
Q Consensus 9 L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~~ 88 (649)
+...+..|-.+++-+ +--+..=..|...|+|++....... + .. .+..+...+......+...++.+...|..
T Consensus 22 ~~~li~~~~~Y~kal----~a~~~a~~~~~dAl~kia~~A~~s~-~--sk-~lG~~L~~i~~~~r~ie~~l~~~~~~~~~ 93 (223)
T cd07605 22 LRNLIKAGKKYQKAL----QALSQAAKVFFDALAKIGELASQSR-G--SQ-ELGEALKQIVDTHKSIEASLEQVAKAFHG 93 (223)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCC-c--ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433 3333444556667777766554321 0 01 35555555555555555556666666666
Q ss_pred HHHHHHHHHH
Q psy10868 89 FIIKEVTIFV 98 (649)
Q Consensus 89 ~v~~~L~~~~ 98 (649)
+++.||..-+
T Consensus 94 ~li~pLe~k~ 103 (223)
T cd07605 94 ELILPLEKKL 103 (223)
T ss_pred HHHHHhhhhH
Confidence 6666654443
No 207
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=74.47 E-value=95 Score=30.83 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=50.9
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10868 228 CEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVF 287 (649)
Q Consensus 228 ~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~ 287 (649)
++.+.-+|+..|.-.+.+ +..|...-..++..|+=||+.++..|...|..+....+...
T Consensus 142 vetgnyeyrl~lRcrq~~-r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~ 200 (215)
T cd07659 142 VETGNYEYRLILRCRQEA-RARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYH 200 (215)
T ss_pred HHhcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888 88899999999999999999999999999999988877663
No 208
>PF15456 Uds1: Up-regulated During Septation
Probab=74.31 E-value=35 Score=31.09 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CC--ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 392 RKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPN---LG--DPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 392 r~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~---~g--d~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
-...|..+|+-++..+.=+.+-|++...|...|...+. ++ +....+..|.++.++++-+..++-+++.-+.++..
T Consensus 30 El~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~ 109 (124)
T PF15456_consen 30 ELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQ 109 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35668888999999999889999999999999987762 22 22335888999999999999999999999988866
Q ss_pred c
Q psy10868 467 N 467 (649)
Q Consensus 467 ~ 467 (649)
+
T Consensus 110 r 110 (124)
T PF15456_consen 110 R 110 (124)
T ss_pred H
Confidence 4
No 209
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=73.01 E-value=1.1e+02 Score=30.70 Aligned_cols=96 Identities=9% Similarity=0.275 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 8 NLSLHTQKGIDFLEKYGHFIRD---RCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAE 84 (649)
Q Consensus 8 ~L~~~~~~gi~~~e~l~~f~ke---Ra~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae 84 (649)
.+..--..|.++-+++..|+.- -.+.....|..|..+ |.+... + ...+..+.+.... .-..+-.
T Consensus 20 rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~---Y~~~~~----~---~~~~~~v~e~~d~---~~~~~~~ 86 (211)
T cd07612 20 NLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDI---YEPDWD----G---HEDLGAIVEGEDL---LWNDYEA 86 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCcC----c---ccHHHHHHhccHH---HHHHHHH
Confidence 3444445667777777777653 333344445444443 322211 1 2233333332222 3444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 85 NLQVFIIKEVTIFVKDFKEERKKHLQDGARMM 116 (649)
Q Consensus 85 ~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~ 116 (649)
.++..++.||..++......++.+.--..|+.
T Consensus 87 ~~~~~vL~pi~~~~s~f~~i~~~i~KR~~Kll 118 (211)
T cd07612 87 KLHDQALRTMESYMAQFPDVKERVAKRGRKLV 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667899999998887777777765544443
No 210
>KOG0980|consensus
Probab=72.66 E-value=2.2e+02 Score=34.21 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10868 118 LLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKAL 197 (649)
Q Consensus 118 ~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~ 197 (649)
....+....+|++..|...+.+..++..+|++-..-++.++.... +-++...++.+.+..+..+....+....+..+
T Consensus 418 ~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~-- 494 (980)
T KOG0980|consen 418 KALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-DVEEENTNLNDQLEELQRAAGRAETKTESQAK-- 494 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--
Confidence 334455577888888888888888888888887766666655442 22233333444333333332221111111111
Q ss_pred HHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 198 EHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 198 ~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
-+...+.++..+..+++.....+.+....|...++.+-
T Consensus 495 --------~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~ 532 (980)
T KOG0980|consen 495 --------ALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLE 532 (980)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11122344555555555555555555566655555443
No 211
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.52 E-value=1.2e+02 Score=30.99 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 93 EVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRAD 151 (649)
Q Consensus 93 ~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~ 151 (649)
.+....+.+.+.-++...+...+.+.+.+...+++.++..+.+...+..++..+.++++
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666677777777777777777777777777777777766665
No 212
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=71.95 E-value=1.1e+02 Score=30.26 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q psy10868 247 RQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKA 300 (649)
Q Consensus 247 ~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~ 300 (649)
+..|+..--.++..+.=|++.|+..|...|..|.+....+.......+..|.++
T Consensus 150 K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~~~ 203 (204)
T cd07661 150 KERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIHEA 203 (204)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555677778788999999999999999999888887777777666543
No 213
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.79 E-value=1.1e+02 Score=30.34 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy10868 179 LERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEM 245 (649)
Q Consensus 179 l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~ 245 (649)
+.-+||.|++...+.+.|..+..++... -..+++-+...+.........+.=+|..+|+...+.
T Consensus 103 vKe~kK~FdK~s~~~d~al~K~~~~~k~---k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~k 166 (200)
T cd07639 103 FRDARKEFERGAESLEAALQHNAETPRR---KAQEVEEAAAALLGARATFRDRALDYALQINVIEDK 166 (200)
T ss_pred HHHHhhhHhhcchhHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777776666665554433211 122555555555555555556666666666655544
No 214
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.30 E-value=2.2e+02 Score=33.56 Aligned_cols=268 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Q psy10868 109 LQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEK 188 (649)
Q Consensus 109 ~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~ 188 (649)
+..+.++..++...+....+... .....++.+++...+..+. .........+.........
T Consensus 181 l~~~~~L~~dl~~~~~~~~~~~~-~~~~~~~~~~le~el~~l~------------------~~~e~l~~~i~~l~~ele~ 241 (650)
T TIGR03185 181 LDLIDRLAGDLTNVLRRRKKSEL-PSSILSEIEALEAELKEQS------------------EKYEDLAQEIAHLRNELEE 241 (650)
T ss_pred cHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH-
Q psy10868 189 AFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEK- 267 (649)
Q Consensus 189 ~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~- 267 (649)
.....+.+...+.....+.-..+.++++-...+........+.-.+| .-...+....|.++..++..-+.
T Consensus 242 a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l---------~~~~~p~~l~~~ll~~~~~q~~~e 312 (650)
T TIGR03185 242 AQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL---------AADPLPLLLIPNLLDSTKAQLQKE 312 (650)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcccCCHhhhHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHHHhhhh---cchHHHHHHHHHHHHhhChHhHHHHHHHHhcCCCCCCCCcccccCCCCCCCCC
Q psy10868 268 ----RVRNIRNFMVHSANIEKKVF---PIINQCLDGIIKAADQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGGESTP 340 (649)
Q Consensus 268 ----Ri~~lk~~l~~y~~~~~~~~---~~~~~~~~~l~~~~~~Id~~~D~~~fi~~~~s~~~~P~~~~FE~~~~~~~~~~ 340 (649)
+...+.+.|..+........ ..-...++.|...+....+...-...+-...++.... .+.......
T Consensus 313 ~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---- 385 (650)
T TIGR03185 313 EQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELT---QLEVLIQQV---- 385 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHH---HHHHHHHHh----
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCCccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 341 IAPAFPHLMGMRPEAATVRGTMSAGRLKRRNNVGGFGSNGKDDFSNLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKM 420 (649)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~lp~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km 420 (649)
....+..+..+..++.+...+++.|.+.
T Consensus 386 ----------------------------------------------------~~~~~~~~~~~~~~~~~~e~el~~l~~~ 413 (650)
T TIGR03185 386 ----------------------------------------------------KRELQDAKSQLLKELRELEEELAEVDKK 413 (650)
T ss_pred ----------------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 421 KGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 421 ~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
... .|.-.+-..+...+.++..+|..++.++..++..+..+..
T Consensus 414 l~~---~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 456 (650)
T TIGR03185 414 IST---IPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKE 456 (650)
T ss_pred Hhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 215
>KOG3565|consensus
Probab=70.72 E-value=2.2e+02 Score=33.42 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 62 CKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESD 141 (649)
Q Consensus 62 ~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~ 141 (649)
...|..++.........|..+......+++........+....++ . .... ..+++..+.+..|.+.+.+..
T Consensus 88 i~~r~e~l~~e~~~v~~~~~~t~k~~~~l~~~~~~~~s~~~~~~~-~-~~~~-------~~~ne~~~~~~~~~k~~~~~~ 158 (640)
T KOG3565|consen 88 IATRLEILKIEDEEVKKSLEATLKTSLDLVAQRKQLESDLFQARN-T-ELLK-------STVNEHEDSYYQLEKRRKDQE 158 (640)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-H-HHHH-------HHHHHHHhhhHHHHHHHHHHH
Confidence 568889998888888999999999988898888888888888887 4 3333 334555566666666666665
Q ss_pred HHHHHHHHHhhhHhhhhhh
Q psy10868 142 KALEHYKRADADLELSRAE 160 (649)
Q Consensus 142 ~a~~~~~ka~~~l~~~r~~ 160 (649)
.+-..|-+++..++.+|++
T Consensus 159 ea~~~~~k~d~~l~~s~~e 177 (640)
T KOG3565|consen 159 EAEQFFHKMDENLEGSRLE 177 (640)
T ss_pred HHHhHHHHhhhhhhhhhhH
Confidence 5555566666444444443
No 216
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.79 E-value=1.8e+02 Score=31.62 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q psy10868 170 KILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQH 249 (649)
Q Consensus 170 k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~ 249 (649)
++|...+..+...++...... ..++..+.+...++. ..++|+..+-......+...-.+|+.....++..+..|
T Consensus 216 kDWR~hleqm~~~~~~I~~~~---~~~~~~L~kl~~~i~---~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESAL---PETKSQLDKLQQDIS---KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 677766666665554444443 344445556555543 35666666666666777778888888888888885443
Q ss_pred HHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhc--chHHHHHHHHHHHHhhCh
Q psy10868 250 YTQAMPEVFAQLQELD--EKRVRNIRNFMVHSANIEKKVFP--IINQCLDGIIKAADQINE 306 (649)
Q Consensus 250 y~~~mp~i~~~lQ~le--e~Ri~~lk~~l~~y~~~~~~~~~--~~~~~~~~l~~~~~~Id~ 306 (649)
.+.-..+...-+.|. .+.++.+|.-|..=..-.+...| .+.+.+..|+..+..+|.
T Consensus 290 -~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdv 349 (359)
T PF10498_consen 290 -KQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDV 349 (359)
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 333222222222211 23445555555554444444444 566777777777776664
No 217
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=68.45 E-value=1.6e+02 Score=30.92 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=47.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 59 YSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDK 135 (649)
Q Consensus 59 ~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~ 135 (649)
..+..++..+..-...+|+.+...=..|+.++..+|...+.. .+....++++.+.+..-.++-+|..+..
T Consensus 148 ~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~-------~~~~a~k~RkkV~~sRL~~D~~R~~~k~ 217 (289)
T PF10455_consen 148 DPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT-------DFKKANKARKKVENSRLQFDAARANLKN 217 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368888888888888888888888888888777777655432 2334445555555555566666666654
No 218
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.37 E-value=2.3e+02 Score=32.75 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccc---ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 31 CAIEMEYAGKLRRLVKNYQPKKEEEDYQ---YSTCKAFKCVLDEVTD----LAGQHEVIAENLQVFIIKEVTIFVKDFKE 103 (649)
Q Consensus 31 a~iE~eYAk~L~kLakk~~~~~~~~~~~---~t~~~aw~~ll~e~~~----~A~~H~~lae~L~~~v~~~L~~~~~e~~~ 103 (649)
..+...|=.+|..|...|..-+.. .|. ..+..-...+-+.+.. +++....-++.-...+-+.|..+....++
T Consensus 222 ~~~~~~~P~ql~el~~gy~~m~~~-gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lek 300 (569)
T PRK04778 222 KELQTELPDQLQELKAGYRELVEE-GYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILER 300 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888777544211 121 1355555555555554 77777766666666666666666555443
Q ss_pred H
Q psy10868 104 E 104 (649)
Q Consensus 104 ~ 104 (649)
.
T Consensus 301 E 301 (569)
T PRK04778 301 E 301 (569)
T ss_pred H
Confidence 3
No 219
>KOG2273|consensus
Probab=68.16 E-value=2.2e+02 Score=32.32 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10868 257 VFAQLQELDEKRVRNIRNFMVHSANIEKKVFP 288 (649)
Q Consensus 257 i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~ 288 (649)
+-..++.++..|...++.++..|+........
T Consensus 454 ~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~ 485 (503)
T KOG2273|consen 454 IRAELERFEESRRQDFKESLKKYADLHVEYAE 485 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447777889999999999988888665543
No 220
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=68.14 E-value=1.3e+02 Score=29.90 Aligned_cols=40 Identities=8% Similarity=0.299 Sum_probs=30.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10868 248 QHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVF 287 (649)
Q Consensus 248 ~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~ 287 (649)
..|+..-..+...++.++.+|...|+.+|..|+.....+.
T Consensus 184 ~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~ 223 (236)
T PF09325_consen 184 DEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQ 223 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556677888899999999999999998866553
No 221
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=67.72 E-value=1.6e+02 Score=30.58 Aligned_cols=49 Identities=8% Similarity=0.077 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhCh
Q psy10868 258 FAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINE 306 (649)
Q Consensus 258 ~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~ 306 (649)
++.+...-......|..++..|..++..-...+...+-.....+..+-|
T Consensus 177 v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~ 225 (269)
T cd07673 177 VEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHI 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444445567777888888888887777777777666666666533
No 222
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.55 E-value=41 Score=32.17 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=54.1
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10868 381 KDDFSNLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTY 460 (649)
Q Consensus 381 ~ed~~~lp~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~ 460 (649)
.+.+..++++. +..+...|.+|+.++.....+...|..-.......|. ..++...|..|+.++..++..
T Consensus 63 Q~~~~~~s~ee-l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 63 QDELEVPSPEE-LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEK 131 (169)
T ss_pred ccccCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544 7777777888888888877777777766666666652 346777888888888888888
Q ss_pred HHHhhh
Q psy10868 461 MEESEA 466 (649)
Q Consensus 461 l~e~~~ 466 (649)
|..+.+
T Consensus 132 L~~l~~ 137 (169)
T PF07106_consen 132 LEKLRS 137 (169)
T ss_pred HHHHHh
Confidence 888766
No 223
>KOG3812|consensus
Probab=67.42 E-value=2.8 Score=43.84 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=35.8
Q ss_pred EEEcCCCCCCCC-------CCCCCCCCCEEEEEeecCCCCcEEEEeCC-CCceeccccC
Q psy10868 589 AKALYPFEATSE-------GSIPMYDGEELYIIELDQGDGWTRVRRQT-DSEEGFVPTS 639 (649)
Q Consensus 589 ~~alydf~~~~~-------~els~~~ge~l~v~~~~~~~gW~~v~~~~-g~~~G~vP~s 639 (649)
+.+.-+|+|.-+ ..++|...|-|.|-++-+ .+||-+|..+ |...||||+-
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKyn-nDWWIGRlVkeg~e~gFiPsp 118 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYN-NDWWIGRLVKEGCEIGFIPSP 118 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcc-cchhHHHHhhcCCccccccch
Confidence 445556666532 357888999999988764 4899998654 4467999973
No 224
>KOG0977|consensus
Probab=66.59 E-value=2.4e+02 Score=32.28 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10868 17 IDFLEKYGHFIRDRCAIEMEYA 38 (649)
Q Consensus 17 i~~~e~l~~f~keRa~iE~eYA 38 (649)
..+.+.|+.|+.+--.||.+-.
T Consensus 45 ~~LNDRLA~YIekVR~LEaqN~ 66 (546)
T KOG0977|consen 45 QELNDRLAVYIEKVRFLEAQNR 66 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999998876
No 225
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=63.69 E-value=1.6e+02 Score=29.17 Aligned_cols=34 Identities=12% Similarity=0.368 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q psy10868 257 VFAQLQELDEKRVRNIRNFMVHSANIEKKVFPII 290 (649)
Q Consensus 257 i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~ 290 (649)
++..+..++..+...|+.+|..|+.....+...+
T Consensus 156 ~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~ 189 (201)
T cd07622 156 ALEDVERFKKQKVRDLKEILISYAKLQIKLAKKG 189 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566688888899999999998877665443
No 226
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.92 E-value=41 Score=26.86 Aligned_cols=58 Identities=26% Similarity=0.408 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 400 IEEIQHSIQQESAAREGLIKMKGVYEDNPNL--GDPHMIEGQLSETDSRLEKLRGELQKYQTYMEES 464 (649)
Q Consensus 400 l~el~~~i~k~~~~~~gl~km~~~y~~np~~--gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~ 464 (649)
+..|++++++..++++.+.+.. .||.| --|..| +.....++..+...+.+++..|+.+
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL----~n~~F~~kAP~eV---ve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKL----SNENFVEKAPEEV---VEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----CSTTHHHHS-CCH---HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cCccccccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444444444322 46666 234444 2345556666666666666666554
No 227
>KOG2273|consensus
Probab=62.43 E-value=2.7e+02 Score=31.49 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy10868 68 VLDEVTDLAGQHEV 81 (649)
Q Consensus 68 ll~e~~~~A~~H~~ 81 (649)
+.+.+..+..++..
T Consensus 279 ~~~~i~~l~~~l~~ 292 (503)
T KOG2273|consen 279 KKEKIDKLEQQLKK 292 (503)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 228
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=62.01 E-value=3.1e+02 Score=32.04 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChH
Q psy10868 262 QELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEK 307 (649)
Q Consensus 262 Q~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~ 307 (649)
+.|-+..+..+..+-.+|...-..+...++...=+|-++++..||.
T Consensus 383 ~~Li~~nlrlV~~iA~ky~~~gl~~~DLiQeG~iGL~~Av~kfd~~ 428 (619)
T PRK05658 383 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 428 (619)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCcc
Confidence 3444455555555566666554455556677777777777777654
No 229
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.73 E-value=4.9e+02 Score=33.51 Aligned_cols=24 Identities=0% Similarity=0.058 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q psy10868 434 HMIEGQLSETDSRLEKLRGELQKY 457 (649)
Q Consensus 434 ~~~~~~l~e~~~~l~~l~~~~~kl 457 (649)
..+...+.++..+++.|......+
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l 1073 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLA 1073 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666665555443333
No 230
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=59.32 E-value=1.6e+02 Score=32.69 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 215 EKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSAN 281 (649)
Q Consensus 215 eK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~ 281 (649)
+|...+-+.....+++++.+...++..+|.. ..+-+..=..|-+.|.++++++--+|++...+|..
T Consensus 33 ek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~-e~kLee~e~~Cn~sm~~lWeECkpCL~~tCm~FYt 98 (436)
T PF01093_consen 33 EKTEEEHKELMKTLEKSKKEKEEALKLANEV-EEKLEEEEEVCNESMMALWEECKPCLKQTCMRFYT 98 (436)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 4444445555666777888888889999888 45555544445558999999999999988888765
No 231
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=58.83 E-value=2e+02 Score=28.80 Aligned_cols=47 Identities=9% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 224 KSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANI 282 (649)
Q Consensus 224 ~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~ 282 (649)
...++..|+..|..+...+-. .|..+.+-+-+.+..|.+++..-...
T Consensus 147 ~eeElr~Ae~kfees~E~a~~------------~M~~i~~~e~e~~~~L~~lv~AQl~Y 193 (215)
T cd07593 147 LEEELRRAKAKYEESSEDVEA------------RMVAIKESEADQYRDLTDLLDAELDY 193 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 445555666666555444422 23444444455555555555444444
No 232
>smart00721 BAR BAR domain.
Probab=57.88 E-value=2e+02 Score=28.50 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHH
Q psy10868 171 ILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHY 250 (649)
Q Consensus 171 ~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y 250 (649)
.+...+..+.+++++++...-+.+.++.++.++......+. .. ++....++++.|+..|... +..+
T Consensus 128 ~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~-----~~-kl~~~e~el~~ak~~fe~~--------~~~l 193 (239)
T smart00721 128 FLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKK-----DE-KLAKAEEELRKAKQEFEES--------NAQL 193 (239)
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCh-----hh-hhhhHHHHHHHHHHHHHHH--------HHHH
Confidence 34455666677777777766667766666655433211110 11 4444555666666666332 3334
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10868 251 TQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVF 287 (649)
Q Consensus 251 ~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~ 287 (649)
...||.+ ...+...+...|..|..+...+.
T Consensus 194 ~~~l~~l-------~~~~~~~~~~~l~~~~~aq~~y~ 223 (239)
T smart00721 194 VEELPQL-------VASRVDFFVNCLQALIEAQLNFH 223 (239)
T ss_pred HHHHHHH-------HHhhHHhHHHHHHHHHHHHHHHH
Confidence 4445544 34445555556666665555553
No 233
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.71 E-value=2.3e+02 Score=28.99 Aligned_cols=26 Identities=8% Similarity=0.295 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 261 LQELDEKRVRNIRNFMVHSANIEKKV 286 (649)
Q Consensus 261 lQ~lee~Ri~~lk~~l~~y~~~~~~~ 286 (649)
+...+..+..-|+..|..|+.....+
T Consensus 201 ~~~Fe~~K~~e~k~~l~~~Ad~~i~f 226 (240)
T cd07667 201 MERWQNNKRQDFRQLLMGMADKNIQY 226 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666554443
No 234
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.67 E-value=61 Score=31.75 Aligned_cols=70 Identities=26% Similarity=0.331 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDN-PNLGDPHMIEGQLSETDSRLEKLRGELQKYQT 459 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~n-p~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~ 459 (649)
.+....++.++..|+++++..+..+..|..-....... +.-..=..+..+|.++..++..|+.++.++..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888888766665332 21111122455566666666666666665543
No 235
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.65 E-value=1.3e+02 Score=26.23 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy10868 392 RKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANSP 469 (649)
Q Consensus 392 r~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~~ 469 (649)
++..|-.+...+..+++..+.++..+.+-++....+. .+...+..+..++..+|..++.++..++..|..+-...|
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~--~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG--EDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3555555666666666666667777776666665554 566778888888888899998888888888887755443
No 236
>PRK11546 zraP zinc resistance protein; Provisional
Probab=57.11 E-value=84 Score=29.37 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=40.7
Q ss_pred CCCCCCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHH-
Q psy10868 383 DFSNLPPSQRK------KKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQ- 455 (649)
Q Consensus 383 d~~~lp~eqr~------~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~- 455 (649)
-|+.|+|||.. .+-..+...|+++|-.++.+.++|. ...+| |+. +|..+..+|..|+..++
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl-----~~~~p---D~~----kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALL-----TANPP---DSS----KINAVAKEMENLRQSLDE 107 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCC---CHH----HHHHHHHHHHHHHHHHHH
Confidence 35589999875 3345566777777777777777764 12233 332 34455555555555555
Q ss_pred ---HHHHHHHHh
Q psy10868 456 ---KYQTYMEES 464 (649)
Q Consensus 456 ---kl~~~l~e~ 464 (649)
++...++..
T Consensus 108 ~r~~~~~~~~k~ 119 (143)
T PRK11546 108 LRVKRDIAMAEA 119 (143)
T ss_pred HHHHHHHHHHHc
Confidence 445555553
No 237
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=56.87 E-value=1.6e+02 Score=27.15 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-ccccccccHHHHHHHHHHHH
Q psy10868 22 KYGHFIRDRCAIEMEYAGKLRRLVKNYQPKK-EEEDYQYSTCKAFKCVLDEV 72 (649)
Q Consensus 22 ~l~~f~keRa~iE~eYAk~L~kLakk~~~~~-~~~~~~~t~~~aw~~ll~e~ 72 (649)
+|..+|++++.-=..++..|+.++..+...- .+....+++..+|..|..-+
T Consensus 30 ~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~lks~~ 81 (139)
T TIGR02284 30 ELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGKIRATL 81 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999987542 12123347888998666544
No 238
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=54.88 E-value=25 Score=27.76 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 386 NLPPSQRKKKLQQRIEEIQHSIQQESAARE 415 (649)
Q Consensus 386 ~lp~eqr~~~l~~kl~el~~~i~k~~~~~~ 415 (649)
++..|||+..|.++|++.++..++.+....
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999998888766543
No 239
>KOG0996|consensus
Probab=54.85 E-value=5.2e+02 Score=32.32 Aligned_cols=26 Identities=12% Similarity=0.390 Sum_probs=18.0
Q ss_pred CCCCCCEEEEEeecCCCCcEEEEeCCCC
Q psy10868 604 PMYDGEELYIIELDQGDGWTRVRRQTDS 631 (649)
Q Consensus 604 s~~~ge~l~v~~~~~~~gW~~v~~~~g~ 631 (649)
+|.+|=.+.|.-.. -.|-...+..||
T Consensus 1174 PFseGV~FSVrPpK--KSWK~I~NLSGG 1199 (1293)
T KOG0996|consen 1174 PFSEGVMFSVRPPK--KSWKNISNLSGG 1199 (1293)
T ss_pred CcccCceEEeeCch--hhhhhcccCCcc
Confidence 57777777665543 258888888875
No 240
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=54.69 E-value=5.5e+02 Score=32.57 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy10868 26 FIRDRCAIEMEYAGK 40 (649)
Q Consensus 26 f~keRa~iE~eYAk~ 40 (649)
+..+...++..+.+.
T Consensus 672 l~~~l~~~~~~~~~~ 686 (1163)
T COG1196 672 LEEELAELEAQLEKL 686 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 241
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=54.59 E-value=1.2e+02 Score=25.03 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 393 KKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEE 463 (649)
Q Consensus 393 ~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e 463 (649)
...+..++..+..+|......++.|........... -.+...|..++.++..+-+.|...+..-...|.+
T Consensus 36 ~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 36 LEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 667777899999999999999999998888874443 3566778888888888888888877777666653
No 242
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.35 E-value=3.8e+02 Score=30.58 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy10868 253 AMPEVFAQLQELDEKRVRNIRN 274 (649)
Q Consensus 253 ~mp~i~~~lQ~lee~Ri~~lk~ 274 (649)
..|.|-..|... ..++..+.+
T Consensus 286 ~Cp~C~~~~~~~-~~~~~~l~d 306 (562)
T PHA02562 286 VCPTCTQQISEG-PDRITKIKD 306 (562)
T ss_pred CCCCCCCcCCCc-HHHHHHHHH
Confidence 344444334333 334444333
No 243
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=52.76 E-value=2.7e+02 Score=28.49 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy10868 173 RNQVDALERALKNYEKAFRDADKALEHYKRA 203 (649)
Q Consensus 173 ~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka 203 (649)
..-+..+.|.|++....--+++.++.++.++
T Consensus 117 e~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a 147 (246)
T cd07618 117 EVEIPNIQKQRKQLAKLVLDWDSARGRYNQA 147 (246)
T ss_pred HhHHHHHHHHHHHHHhHHhhHHHHHHHHHhc
Confidence 3344566666666666666666666666554
No 244
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=52.67 E-value=2.6e+02 Score=28.25 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 95 TIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRA 150 (649)
Q Consensus 95 ~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka 150 (649)
..-++........+..++..++..+......|+++...+..+......+....+..
T Consensus 21 ~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~ 76 (237)
T PF00261_consen 21 EEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADES 76 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555566666666666666666566655555555554444444444443
No 245
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=52.16 E-value=2.8e+02 Score=28.34 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhh
Q psy10868 221 MAIKSQHCEDTKTEYANQLQRANEMQRQHYTQA 253 (649)
Q Consensus 221 ~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~ 253 (649)
+......+..........|.++ +.||+..
T Consensus 151 ~~~ae~~v~~Lek~lkr~I~KS----rPYfe~K 179 (239)
T PF05276_consen 151 YNEAEQRVQQLEKKLKRAIKKS----RPYFELK 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----hHHHHHH
Confidence 3333334444444444444443 5555543
No 246
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=52.14 E-value=2.2e+02 Score=31.72 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHH-
Q psy10868 107 KHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKN- 185 (649)
Q Consensus 107 ~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~- 185 (649)
.+..-+.|-..++......|+|++++++.+.+...+.+.++++++.-+ .+.|+..|+.+..-|+.+=.+
T Consensus 27 qMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~C----------n~sm~~lWeECkpCL~~tCm~F 96 (436)
T PF01093_consen 27 QMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVC----------NESMMALWEECKPCLKQTCMRF 96 (436)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhHHH
Confidence 333444455555666667888999999999999999999998876433 245667899998888876444
Q ss_pred HHHHHhh
Q psy10868 186 YEKAFRD 192 (649)
Q Consensus 186 Y~~~~re 192 (649)
|-+.||-
T Consensus 97 Yt~tCr~ 103 (436)
T PF01093_consen 97 YTRTCRS 103 (436)
T ss_pred HhcccCC
Confidence 4447763
No 247
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=50.93 E-value=18 Score=19.81 Aligned_cols=13 Identities=31% Similarity=0.243 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q psy10868 34 EMEYAGKLRRLVK 46 (649)
Q Consensus 34 E~eYAk~L~kLak 46 (649)
|++|+|.+..|++
T Consensus 2 eee~~km~~~lar 14 (15)
T PF10550_consen 2 EEEVAKMAAELAR 14 (15)
T ss_dssp HHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHhc
Confidence 7889999998875
No 248
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.76 E-value=1.2e+02 Score=23.95 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 403 IQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESE 465 (649)
Q Consensus 403 l~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~ 465 (649)
|+.+|..++.--+-|.+.+.+| ...+.+|-++..+...|..++..|...++++.
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n---------~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSAN---------LAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666667777777775 45678899999999999999999999998864
No 249
>PLN02320 seryl-tRNA synthetase
Probab=50.12 E-value=1.7e+02 Score=33.24 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy10868 393 KKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANSPAGM 472 (649)
Q Consensus 393 ~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~~~~~ 472 (649)
+..+-.+...+..+++..+.+++.+.+-+.. ...+ .+...+..+..++..+|..|+.++..++..|.++--..|--+
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~--~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~ 171 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMKG-KLEP--SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMT 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3444444444455555555555555544443 1222 345566777788888999999999999998888877766545
Q ss_pred C
Q psy10868 473 R 473 (649)
Q Consensus 473 ~ 473 (649)
|
T Consensus 172 h 172 (502)
T PLN02320 172 H 172 (502)
T ss_pred C
Confidence 4
No 250
>smart00030 CLb CLUSTERIN Beta chain.
Probab=48.78 E-value=2.8e+02 Score=27.39 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHH-HHHHH
Q psy10868 109 LQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA-LKNYE 187 (649)
Q Consensus 109 ~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~Ka-Kk~Y~ 187 (649)
..-+.+...+.++....|++++++.+.+.+...+.+.++..++.=+ ++.|+..|..+-.-|... .+=|-
T Consensus 35 K~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC----------netm~alWeECKpCLk~tCmkfYs 104 (206)
T smart00030 35 KTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC----------NETMMALWEECKPCLKQTCMKFYA 104 (206)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334455555566667888999999999999999988888775322 356778898888888775 44455
Q ss_pred HHHh
Q psy10868 188 KAFR 191 (649)
Q Consensus 188 ~~~r 191 (649)
+.|+
T Consensus 105 r~Cr 108 (206)
T smart00030 105 RVCR 108 (206)
T ss_pred HhcC
Confidence 5675
No 251
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.93 E-value=2.9e+02 Score=30.39 Aligned_cols=91 Identities=12% Similarity=0.202 Sum_probs=56.5
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH--Hhh
Q psy10868 227 HCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA--DQI 304 (649)
Q Consensus 227 ~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~--~~I 304 (649)
++...+..+...-..+... +..|..++..+.+.||+ |..|+..|-+.++.+.++...=...+.+.+..|.+.+ ..-
T Consensus 220 el~eik~~~~~L~~~~e~L-k~~~~~e~~~~~~~LqE-Er~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~ 297 (395)
T PF10267_consen 220 ELREIKESQSRLEESIEKL-KEQYQREYQFILEALQE-ERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSY 297 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333344443333333333 33455556666666643 5667788889999888886666666777777776654 445
Q ss_pred ChHhHHHHHHHHhcC
Q psy10868 305 NEKEDSALVIERYKS 319 (649)
Q Consensus 305 d~~~D~~~fi~~~~s 319 (649)
+.-+|+..+++...+
T Consensus 298 eRaRdi~E~~Es~qt 312 (395)
T PF10267_consen 298 ERARDIWEVMESCQT 312 (395)
T ss_pred HHHhHHHHHHHHHHH
Confidence 667888888887543
No 252
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=47.72 E-value=1.6e+02 Score=28.60 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10868 388 PPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEAN 467 (649)
Q Consensus 388 p~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~ 467 (649)
..+.|+.-|..++..+...|+.....++-+..-...| +|..-.++|+-+...+++|+..++.++..
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--------------qll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--------------QLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457777788888887777777766666555444444 78889999999999999999999997764
No 253
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=47.37 E-value=6.7e+02 Score=31.38 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 437 EGQLSETDSRLEKLRGELQKYQTYMEESE 465 (649)
Q Consensus 437 ~~~l~e~~~~l~~l~~~~~kl~~~l~e~~ 465 (649)
..++..+...+..++..+..+...+..+.
T Consensus 468 ~~~l~~~~~~l~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 254
>KOG3705|consensus
Probab=47.37 E-value=19 Score=38.76 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=40.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCcee
Q psy10868 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642 (649)
Q Consensus 588 ~~~alydf~~~~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~ 642 (649)
..+++|+..++...||.++.||+|-|-..- =||.-++.+...+++|++|+-=|.
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNH-WdGySKG~Nr~t~~~GlfPSyKvr 564 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNH-WDGYSKGTNRQTYKEGLFPSYKVR 564 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccc-cccccccccccccccCCCccceee
Confidence 468899999999999999999999775522 245556655555589999985444
No 255
>KOG1118|consensus
Probab=46.88 E-value=3.8e+02 Score=28.36 Aligned_cols=39 Identities=5% Similarity=0.109 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 59 YSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIF 97 (649)
Q Consensus 59 ~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~ 97 (649)
+++..++..+-+.+..+|+....+...+....++||..+
T Consensus 103 Ss~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l 141 (366)
T KOG1118|consen 103 SSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNL 141 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 467778888888888888888888888888888888877
No 256
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.18 E-value=2.3e+02 Score=25.80 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10868 172 LRNQVDALERALKNYEKA 189 (649)
Q Consensus 172 l~~~~~~l~KaKk~Y~~~ 189 (649)
+.........|..+|+..
T Consensus 33 l~~q~~~a~~Aq~~YE~E 50 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERE 50 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444455555543
No 257
>PLN02678 seryl-tRNA synthetase
Probab=44.98 E-value=2.2e+02 Score=31.96 Aligned_cols=75 Identities=8% Similarity=0.107 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANSP 469 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~~ 469 (649)
.+.+++++.+++.|+.+..+..+++..+ ..++ .+...+..+..++..+|..|+.++..++..|.++-...|
T Consensus 39 d~~~r~l~~~~e~lr~erN~~sk~I~~~-------k~~~--~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 39 DKEWRQRQFELDSLRKEFNKLNKEVAKL-------KIAK--EDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555666666666666666666555321 1222 234456667778888999999999999998888887766
Q ss_pred CCCC
Q psy10868 470 AGMR 473 (649)
Q Consensus 470 ~~~~ 473 (649)
--+|
T Consensus 110 Ni~~ 113 (448)
T PLN02678 110 NLVH 113 (448)
T ss_pred CCCC
Confidence 5444
No 258
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=44.05 E-value=2.5e+02 Score=31.08 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGD-PHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANS 468 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd-~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~ 468 (649)
.+++++++.+++.|+.+..+..+++.. -.... .+ ...+..++.++..+|..|+.++..++..+.++-...
T Consensus 36 d~~~r~~~~~~~~l~~erN~~sk~i~~-------~~~~~--~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 36 DDERKKLLSEIEELQAKRNELSKQIGK-------AKGQK--KDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666666666666555555532 11111 23 356777788889999999999999999888887777
Q ss_pred CCCCC
Q psy10868 469 PAGMR 473 (649)
Q Consensus 469 ~~~~~ 473 (649)
|--+|
T Consensus 107 PN~~~ 111 (418)
T TIGR00414 107 PNIPH 111 (418)
T ss_pred CCCCC
Confidence 65555
No 259
>PF14282 FlxA: FlxA-like protein
Probab=43.92 E-value=1.4e+02 Score=26.29 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
..+...|+++|..|+.+|...... .-.++..-..++..+..+|..|++.|..++....+-..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~---------------~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD---------------SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888887664432 11255556677777888888888888888777776654
No 260
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.58 E-value=5.7e+02 Score=29.48 Aligned_cols=211 Identities=11% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHH
Q psy10868 171 ILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQ------HCEDTKTEYANQLQRANE 244 (649)
Q Consensus 171 ~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~------~~~~ak~eY~~~l~~~N~ 244 (649)
.+-+.+..+...+..|...+.++..++..+.+...+......+++.++.++..... +.+...++|
T Consensus 148 ~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~--------- 218 (563)
T TIGR00634 148 QLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQ--------- 218 (563)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHH---------
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhh-ChHhHHHHHHHH
Q psy10868 245 MQRQHYTQAMPEVFAQLQELDEK-------RVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQI-NEKEDSALVIER 316 (649)
Q Consensus 245 ~q~~~y~~~mp~i~~~lQ~lee~-------Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~I-d~~~D~~~fi~~ 316 (649)
..-.+++.....+-..++.|..+ -+..+..+...+..+ +.+.+....+.+..+...+ |...++..+...
T Consensus 219 ~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~---~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~ 295 (563)
T TIGR00634 219 QRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASV---IDGSLRELAEQVGNALTEVEEATRELQNYLDE 295 (563)
T ss_pred HHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHh---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccCCccCCCCCCCCCCCCCCchHHHHHH
Q psy10868 317 YKSGFTPPGDIPFEDLSRGGESTPIAPAFPHLMGMRPEAATVRGTMSAGRLKRRNNVGGFGSNGKDDFSNLPPSQRKKKL 396 (649)
Q Consensus 317 ~~s~~~~P~~~~FE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~lp~eqr~~~l 396 (649)
...| +.|+..+
T Consensus 296 ----------------------l~~d-----------------------------------------------p~~L~el 306 (563)
T TIGR00634 296 ----------------------LEFD-----------------------------------------------PERLNEI 306 (563)
T ss_pred ----------------------CCCC-----------------------------------------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 397 QQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEES 464 (649)
Q Consensus 397 ~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~ 464 (649)
+.++..+++-..|-....+.+....+..++.= ..-......+.++..++..++.++.++-..|...
T Consensus 307 e~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL--~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 307 EERLAQIKRLKRKYGASVEEVLEYAEKIKEEL--DQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 261
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.46 E-value=8.4e+02 Score=31.42 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=19.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10868 434 HMIEGQLSETDSRLEKLRGELQKYQTYMEESEAN 467 (649)
Q Consensus 434 ~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~ 467 (649)
.++..++-..--++...+..+..|..|...++..
T Consensus 1097 k~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~ 1130 (1311)
T TIGR00606 1097 RDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQA 1130 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555556666666655
No 262
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=43.23 E-value=3.3e+02 Score=26.67 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 62 CKAFKCVLDEVTDLAGQH-EVIAENLQVFIIKEVTIFVKDFKEERKKHL 109 (649)
Q Consensus 62 ~~aw~~ll~e~~~~A~~H-~~lae~L~~~v~~~L~~~~~e~~~~rK~~~ 109 (649)
..+|..+...+..+...+ ..+-+.+...|+.|+..+..-....+|.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~e~~~~i~~~V~~Pl~~~~~~~~~~~k~I~ 109 (195)
T cd07589 61 ESKWERFRRVVRGISSKALPEFKSRVRKLVIEPLSSLLKLFSGPQKLIQ 109 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 346777766655554433 355778888899999999876665555554
No 263
>KOG0972|consensus
Probab=42.56 E-value=4.2e+02 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 125 ALERARKNYDKAYRESDKALEHYKRAD 151 (649)
Q Consensus 125 ~l~k~kk~y~~~~~e~~~a~~~~~ka~ 151 (649)
+|..+-.+|.++..+...++.+|..+.
T Consensus 274 qL~~l~q~fr~a~~~lse~~e~y~q~~ 300 (384)
T KOG0972|consen 274 QLASLMQKFRRATDTLSELREKYKQAS 300 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445555555555555555555544
No 264
>KOG4403|consensus
Probab=42.53 E-value=5.1e+02 Score=28.63 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10868 211 RAEVEKQRINMAIKSQHC 228 (649)
Q Consensus 211 k~eleK~~~k~~~~~~~~ 228 (649)
+++++.++..+.++..++
T Consensus 308 rkelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 308 RKELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554444
No 265
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.00 E-value=1.5e+02 Score=33.84 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------CCChhhh--------------hhhHHH
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPN-------------LGDPHMI--------------EGQLSE 442 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~-------------~gd~~~~--------------~~~l~e 442 (649)
.-+...|+.+|.+|+.++.+.+..++++......-..+.. -.++..+ ...+.+
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999988888877765544433321 1233322 223345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 443 TDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 443 ~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
+..+|..++.++.+++..|+.+.+
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556666666666666666666554
No 266
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.86 E-value=3.9e+02 Score=27.09 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChH
Q psy10868 266 EKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEK 307 (649)
Q Consensus 266 e~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~ 307 (649)
......|..++..+..++..-...+...+..+...+..+++.
T Consensus 182 ~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~~~~~~~~ 223 (233)
T cd07649 182 SKWFEEMVTTSLELERLEVERIEMIRQHLCQYTQLRHETDMF 223 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 344555666666777777777777777777777777666653
No 267
>KOG1962|consensus
Probab=41.85 E-value=3.7e+02 Score=27.00 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy10868 212 AEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQ 246 (649)
Q Consensus 212 ~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q 246 (649)
.+++++..+.......++.-.++|-..+..++..|
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34455555555555555556666666665555543
No 268
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=41.27 E-value=3.5e+02 Score=26.44 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q psy10868 5 QYDNLSLHTQKGIDFLEKYGHFIRDRCAI---EMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEV 81 (649)
Q Consensus 5 gf~~L~~~~~~gi~~~e~l~~f~keRa~i---E~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~ 81 (649)
+++.|..-+..+..|-++|..-+.--..+ -.+.+.+|.-=|.||..- ++..++.+..+-..+-..-..+=..+..
T Consensus 2 ~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~e--n~~~~~~LsrAa~~yG~a~~~mEkEre~ 79 (209)
T cd07607 2 KLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSE--NPSVNTALSRASLHYGSARNQMEKEREN 79 (209)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccC--CCCcccHHHHHHHHHhHHHHHHHHHHHH
Confidence 56788888999999988887655443333 345566666667777532 2334456777777777777777778888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10868 82 IAENLQVFIIKEVTIFVK 99 (649)
Q Consensus 82 lae~L~~~v~~~L~~~~~ 99 (649)
+-..|.++|++||+.++.
T Consensus 80 l~r~l~~QV~ePLRaMv~ 97 (209)
T cd07607 80 LHRVLSEQVAEPLRAMVY 97 (209)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 888999999999999874
No 269
>KOG3230|consensus
Probab=40.77 E-value=2.8e+02 Score=27.27 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCCCCChhhh
Q psy10868 387 LPPSQRKKKLQQRIEEIQHSIQQESAAREGLIK-MKGVYEDNPNLGDPHMI 436 (649)
Q Consensus 387 lp~eqr~~~l~~kl~el~~~i~k~~~~~~gl~k-m~~~y~~np~~gd~~~~ 436 (649)
..|..++++-+.-+.....+|++++...+--+| ++--..+.-.-|...++
T Consensus 8 ~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~ 58 (224)
T KOG3230|consen 8 KTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAV 58 (224)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 467777777777777777777777766665554 55555544444555553
No 270
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=40.39 E-value=4.1e+02 Score=26.92 Aligned_cols=26 Identities=12% Similarity=0.278 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 258 FAQLQELDEKRVRNIRNFMVHSANIE 283 (649)
Q Consensus 258 ~~~lQ~lee~Ri~~lk~~l~~y~~~~ 283 (649)
|..+.+.+-+.+..|.+++..-....
T Consensus 190 M~~i~~~~~~~~~~L~~lv~AQl~Yh 215 (229)
T cd07594 190 LEGISSTHANHLRCLRDFVEAQMTYY 215 (229)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34444444455555555554444443
No 271
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.96 E-value=4.6e+02 Score=27.39 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10868 18 DFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPK 51 (649)
Q Consensus 18 ~~~e~l~~f~keRa~iE~eYAk~L~kLakk~~~~ 51 (649)
.+.+.|+.|+.+--.||.+..+ |..-...+..+
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~-Le~~i~~~~~~ 40 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKR-LESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhc
Confidence 4778899999999999999874 55444444433
No 272
>PRK03918 chromosome segregation protein; Provisional
Probab=39.80 E-value=7.7e+02 Score=29.93 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 394 KKLQQRIEEIQHSIQQESAAREGLI 418 (649)
Q Consensus 394 ~~l~~kl~el~~~i~k~~~~~~gl~ 418 (649)
..+..++..++..+......++.|.
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~ 425 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELK 425 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444444
No 273
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=38.61 E-value=33 Score=26.55 Aligned_cols=24 Identities=13% Similarity=0.377 Sum_probs=18.9
Q ss_pred CCCCCCEEEEEeecCCCCcEEEEeC
Q psy10868 604 PMYDGEELYIIELDQGDGWTRVRRQ 628 (649)
Q Consensus 604 s~~~ge~l~v~~~~~~~gW~~v~~~ 628 (649)
.+++|+.|.+.-.++ ++||.+.-.
T Consensus 2 ~~~~G~~Ve~~~~~~-~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEE-DSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCC-CEEEEEEEE
Confidence 478999999998663 489998753
No 274
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=38.57 E-value=4.9e+02 Score=27.34 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 94 VTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRA 150 (649)
Q Consensus 94 L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka 150 (649)
+..++......+..+..++.++...+++.-.+..+.++.|...-.+++++-....+.
T Consensus 4 ~~~v~d~~~~~~~~~~~Dl~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~n~e~ 60 (289)
T PF05149_consen 4 VSAVIDYKRRQKQACEEDLERIKEKIQNTDAEDAAQRKRYAAQRKESEKFLQKNEEQ 60 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455566666666777777777777777766666667777666666555554444443
No 275
>KOG2008|consensus
Probab=38.33 E-value=5.1e+02 Score=27.40 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcc
Q psy10868 84 ENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQ 163 (649)
Q Consensus 84 e~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~ 163 (649)
++|+... +.|..+..+++..|++..+..-.....|.
T Consensus 20 EkLN~sT-DdIN~~E~~Le~ar~~Fretqv~~t~kl~------------------------------------------- 55 (426)
T KOG2008|consen 20 EKLNQST-DDINRRETELEDARQKFRETQVEATVKLD------------------------------------------- 55 (426)
T ss_pred HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 164 DGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 164 ~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
......-+++.|++.-|+-..++-+. +.+.+|+...++.++..+.-|+..-.+.=+.+|
T Consensus 56 ------el~Kk~~k~I~ksrpf~elk~~er~~---------------r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~ 114 (426)
T KOG2008|consen 56 ------ELVKKIGKAIEKSRPFWELKRVERQA---------------RLEAQKAAQDFERATEVLRAAKEQVSLAEQSLL 114 (426)
T ss_pred ------HHHHHHHHHHhhcccHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHhHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HhhhhcchHHHHHHHHHHHHhhChHhHHHHHH
Q psy10868 244 EMQRQHYTQAMPEVFAQ-LQELDEKRVRNIRNFMVHSANI--EKKVFPIINQCLDGIIKAADQINEKEDSALVI 314 (649)
Q Consensus 244 ~~q~~~y~~~mp~i~~~-lQ~lee~Ri~~lk~~l~~y~~~--~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi 314 (649)
.-+..-|...+-.++++ +|..-+.--.+++.-+...... .......+.+|......+|..--|-.......
T Consensus 115 ~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k~~~ 188 (426)
T KOG2008|consen 115 EDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEKKNKRAIKKSRPYFELKAKY 188 (426)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHHHHH
No 276
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=37.76 E-value=1.4e+02 Score=32.94 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=48.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 386 NLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESE 465 (649)
Q Consensus 386 ~lp~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~ 465 (649)
-++....+..|+.++..++++|++ +...+.++| ....++.++..+|..+...+..++..+++-.
T Consensus 237 ~l~~~~~~~~l~~~~~~~~~~i~~----------l~~~l~~~~------k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~ 300 (406)
T PF02388_consen 237 ELNGKEYLESLQEKLEKLEKEIEK----------LEEKLEKNP------KKKNKLKELEEQLASLEKRIEEAEELIAEYG 300 (406)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHH----------HHHHHHH-T------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355678899999999999888766 455556677 6677888888888888888888888777654
Q ss_pred h
Q psy10868 466 A 466 (649)
Q Consensus 466 ~ 466 (649)
.
T Consensus 301 ~ 301 (406)
T PF02388_consen 301 D 301 (406)
T ss_dssp S
T ss_pred C
Confidence 4
No 277
>PRK11637 AmiB activator; Provisional
Probab=37.19 E-value=6.1e+02 Score=28.02 Aligned_cols=12 Identities=8% Similarity=0.357 Sum_probs=7.3
Q ss_pred CCCCCCEEEEEe
Q psy10868 604 PMYDGEELYIIE 615 (649)
Q Consensus 604 s~~~ge~l~v~~ 615 (649)
.+..|+.|-.+.
T Consensus 388 ~V~~G~~ig~~g 399 (428)
T PRK11637 388 QVRAGQPIALVG 399 (428)
T ss_pred EECCCCeEEeec
Confidence 566777765444
No 278
>KOG0933|consensus
Probab=36.63 E-value=9.1e+02 Score=29.86 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHhHHHHHhhHHHHHHHHHHHHH
Q psy10868 212 AEVEKQRINMAIKSQHCEDTKTEYANQLQ---RANEMQRQHYTQAMPEVFAQLQELDE 266 (649)
Q Consensus 212 ~eleK~~~k~~~~~~~~~~ak~eY~~~l~---~~N~~q~~~y~~~mp~i~~~lQ~lee 266 (649)
+++..+..+++.....+++..++|..... ..+.. ...+...|..+...+..+..
T Consensus 794 keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e-~~~~k~~l~~~~~~~~~l~~ 850 (1174)
T KOG0933|consen 794 KEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKE-ISSLKQQLEQLEKQISSLKS 850 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777778888854333 33333 33444555555444444433
No 279
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.60 E-value=4.7e+02 Score=26.57 Aligned_cols=82 Identities=11% Similarity=0.182 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhh-ChHhH
Q psy10868 236 ANQLQRANEMQRQHYTQAMPEVFAQLQE-----LDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQI-NEKED 309 (649)
Q Consensus 236 ~~~l~~~N~~q~~~y~~~mp~i~~~lQ~-----lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~I-d~~~D 309 (649)
..+|..+|.+ -.-|+..+..+...... ....|+..+...+.+...+...+-..+.-.-.+... .+.| +...|
T Consensus 128 ~~~Id~L~~Q-iE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~-~e~V~~iked 205 (233)
T PF04065_consen 128 KDSIDELNRQ-IEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELD-PEQVEDIKED 205 (233)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHH
Confidence 5666777665 66666666655543321 355667777766666655544332111111111111 1111 34578
Q ss_pred HHHHHHHhcC
Q psy10868 310 SALVIERYKS 319 (649)
Q Consensus 310 ~~~fi~~~~s 319 (649)
+..||++|..
T Consensus 206 ieyYve~n~d 215 (233)
T PF04065_consen 206 IEYYVESNQD 215 (233)
T ss_pred HHHHHHcCCC
Confidence 8888888643
No 280
>KOG4403|consensus
Probab=36.19 E-value=6.3e+02 Score=27.92 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=5.7
Q ss_pred ceeccccCcee
Q psy10868 632 EEGFVPTSYIQ 642 (649)
Q Consensus 632 ~~G~vP~syv~ 642 (649)
..|.+|..|+.
T Consensus 552 ~~g~~P~l~r~ 562 (575)
T KOG4403|consen 552 RKGIFPKLFRR 562 (575)
T ss_pred hhccChHHHHh
Confidence 34555555554
No 281
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=35.93 E-value=4.7e+02 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q psy10868 213 EVEKQRINMAIKSQHCEDTKTE 234 (649)
Q Consensus 213 eleK~~~k~~~~~~~~~~ak~e 234 (649)
.++|++.+|...++++++++..
T Consensus 126 ~leKAK~~Y~~~c~e~Ekar~~ 147 (234)
T cd07652 126 AAEKAKARYDSLADDLERVKTG 147 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455555555555555555444
No 282
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=35.22 E-value=2.9e+02 Score=23.76 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10868 174 NQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242 (649)
Q Consensus 174 ~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~ 242 (649)
....+..|+.+.|....|..+.......+ +.....+-......+.+.+++|...|..+
T Consensus 35 rl~~Ek~kadqkyfa~mr~~d~l~~e~k~-----------L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~ 92 (96)
T PF08647_consen 35 RLEAEKAKADQKYFAAMRSKDALDNEMKK-----------LNTQLSKSSELIEQLKETEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33445667777888877766654322211 22222222333334445666666655554
No 283
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.99 E-value=1.2e+02 Score=27.05 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESAAREGLIKMKG 422 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~~~~gl~km~~ 422 (649)
+++..+++.+..|+..+..-...++.|..+.+
T Consensus 13 ~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00890 13 QQLEALQQQLQKLEAQLTEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555555555555555666666553
No 284
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.74 E-value=80 Score=30.06 Aligned_cols=57 Identities=16% Similarity=0.294 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 394 KKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEES 464 (649)
Q Consensus 394 ~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~ 464 (649)
.+.-.+...|++|+.+.+++..++. ++|-| .+....+++++++..++.++...+..-
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS-~qDeF-------------AkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAIS-AQDEF-------------AKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS--TTTSH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCC-cHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777776652 22222 345566777888888777777766654
No 285
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=34.50 E-value=38 Score=38.67 Aligned_cols=40 Identities=20% Similarity=0.491 Sum_probs=31.9
Q ss_pred CCEEEEEeecC----CCCcEEEEeCCCCceeccccCceeecccCC
Q psy10868 608 GEELYIIELDQ----GDGWTRVRRQTDSEEGFVPTSYIQTIALDN 648 (649)
Q Consensus 608 ge~l~v~~~~~----~~gW~~v~~~~g~~~G~vP~syv~~~~~~~ 648 (649)
|+++.|.+... +-+|..+...+| .+|||-+.||++.++.|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 418 (549)
T PRK13545 375 GDIFTISDSNKNEKKDVEWIQITLSNG-EIGWISTKFIEPFKSNN 418 (549)
T ss_pred CceEEEcccccccccCcceEEEEecCC-ccceeeeeeeeecccCC
Confidence 68887776543 238999999887 99999999999877644
No 286
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=34.24 E-value=75 Score=27.81 Aligned_cols=51 Identities=8% Similarity=0.123 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccHHHHHHHHHHH
Q psy10868 21 EKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-EEDYQYSTCKAFKCVLDE 71 (649)
Q Consensus 21 e~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~-~~~~~~t~~~aw~~ll~e 71 (649)
.++..+|.+++..-..++..|+.+...+...-. .....+++..+|..+...
T Consensus 30 ~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ik~~ 81 (111)
T PF09537_consen 30 PELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMDIKSA 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHHHHHH
Confidence 456889999999999999999999998865421 112334677788766653
No 287
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.09 E-value=6.1e+02 Score=27.08 Aligned_cols=88 Identities=16% Similarity=0.288 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q psy10868 182 ALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIK-SQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQ 260 (649)
Q Consensus 182 aKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~-~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~ 260 (649)
++..-...-.+.+..++++..+..|..+-+..+.+.+...... ....-..+.++..++..++.. ...++.++-.+++.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q-~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ-IEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3333334445566666777666666544333333222111100 000116678888999988876 78889999999999
Q ss_pred HHHHHHHHHH
Q psy10868 261 LQELDEKRVR 270 (649)
Q Consensus 261 lQ~lee~Ri~ 270 (649)
.+++..+|-.
T Consensus 156 keEl~~ERD~ 165 (319)
T PF09789_consen 156 KEELVTERDA 165 (319)
T ss_pred HHHHHHHHHH
Confidence 9988887743
No 288
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.82 E-value=3.7e+02 Score=29.87 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANSP 469 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~~ 469 (649)
.+.+++++.+++.|+.+..+..+++..+ ..+. .+...+..+..++..+|..|+.++..++..+.++--..|
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~-------~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQA-------KRKG--EDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666666666666655555331 1222 244567777788888999999999999998888877766
Q ss_pred CCCC
Q psy10868 470 AGMR 473 (649)
Q Consensus 470 ~~~~ 473 (649)
--+|
T Consensus 105 N~~~ 108 (425)
T PRK05431 105 NLPH 108 (425)
T ss_pred CCCC
Confidence 5444
No 289
>KOG1899|consensus
Probab=33.77 E-value=8.2e+02 Score=28.49 Aligned_cols=44 Identities=5% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHHH
Q psy10868 267 KRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVI 314 (649)
Q Consensus 267 ~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi 314 (649)
.|++.|+..|-....... .-...++.++..+.+.+...||..+.
T Consensus 274 ~rd~~lk~a~eslm~ane----~kdr~ie~lr~~ln~y~k~~~iv~i~ 317 (861)
T KOG1899|consen 274 LRDNTLKNALESLMRANE----QKDRFIESLRNYLNNYDKNAQIVRIL 317 (861)
T ss_pred hHHHHHHHHHHHHHhhch----hhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 355555555544433321 12334455555555556555554433
No 290
>KOG0804|consensus
Probab=32.67 E-value=7.4e+02 Score=27.63 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 92 KEVTIFVKDFKEERKKHLQDGARMMNLLEN 121 (649)
Q Consensus 92 ~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~ 121 (649)
+.+..-..+.++.+|-+.....+++..+..
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k 393 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKK 393 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444443333
No 291
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.61 E-value=2.2e+02 Score=31.90 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
...+..-+.++.+|+++|++.+++.+=+.+. ..+...+|+.|+.++..|+..++.+..
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq-------------------~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQ-------------------RGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445666678888888888876665434333 334566778888888888888755444
No 292
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.53 E-value=85 Score=24.59 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKM 420 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km 420 (649)
++|+.-|+..|..|+.++.++...|.+-+-|
T Consensus 31 ~eRIalLq~EIeRlkAe~~kK~~srsAAeaL 61 (65)
T COG5509 31 EERIALLQAEIERLKAELAKKKASRSAAEAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 6889999999999999988888887766543
No 293
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=32.32 E-value=5.4e+02 Score=25.95 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=7.2
Q ss_pred HHHHhhHHHHHHHHHH
Q psy10868 248 QHYTQAMPEVFAQLQE 263 (649)
Q Consensus 248 ~~y~~~mp~i~~~lQ~ 263 (649)
..|+..+-.+-..|..
T Consensus 172 ~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 294
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=31.89 E-value=3.2e+02 Score=23.16 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=45.3
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 393 KKKLQ-QRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEES 464 (649)
Q Consensus 393 ~~~l~-~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~ 464 (649)
....+ .++++|..+|++-..+|+.|..--..|....-+-. .-..+..+..+=......+++++.+..++
T Consensus 13 ~~e~~~k~lE~L~~eL~~it~ERnELr~~L~~~~~~~~n~R---~n~~ye~Lk~q~~~vM~dl~~l~~~~~ea 82 (84)
T PF04822_consen 13 KKEKKMKELERLKFELQKITKERNELRDILALYTEGSLNNR---PNPEYEMLKSQHEEVMSDLHKLEMEITEA 82 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccC---CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444 67889999999999999999998888865433322 22233344444455566667776666554
No 295
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.36 E-value=5.7e+02 Score=25.92 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=14.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHH
Q psy10868 224 KSQHCEDTKTEYANQLQRANEMQRQ 248 (649)
Q Consensus 224 ~~~~~~~ak~eY~~~l~~~N~~q~~ 248 (649)
....+.....+|.......|..+..
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556777777777766443
No 296
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.32 E-value=5e+02 Score=25.26 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 4 DQYDNLSLHTQKGIDFLE-KYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVI 82 (649)
Q Consensus 4 Dgf~~L~~~~~~gi~~~e-~l~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~l 82 (649)
..|..+..+++.=...+. .|-...+.-..=..+++..|..|...|..-... +.+..+..+...+-.-++..+..-..+
T Consensus 4 ~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~-E~~~~L~~~le~~g~a~D~~~~~~~~l 82 (187)
T cd07629 4 DEFTDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLE-EQKSELAEALEKVGQAVDSTYLATEAL 82 (187)
T ss_pred hHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665555553 455555555555566666667777666433211 122257778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10868 83 AENLQVFIIKEVTIFVK 99 (649)
Q Consensus 83 ae~L~~~v~~~L~~~~~ 99 (649)
.+.+...+.+||+.+..
T Consensus 83 ~~~l~~~f~EpL~E~~~ 99 (187)
T cd07629 83 VGSLYYNINEPLSESAQ 99 (187)
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 88888888888888864
No 297
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=31.29 E-value=3.6e+02 Score=23.66 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHHHHHHh
Q psy10868 267 KRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSALVIERY 317 (649)
Q Consensus 267 ~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~~~ 317 (649)
.-+..|..++.++..+..+..-...+..+.|.......+++.+.-.||...
T Consensus 58 ~vi~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~~l~~i~~~ 108 (113)
T PF02520_consen 58 AVISNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVDTLFFIRKE 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 345556678888888888888888899999999999999998888888764
No 298
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.67 E-value=3.9e+02 Score=26.55 Aligned_cols=27 Identities=7% Similarity=0.202 Sum_probs=18.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 387 LPPSQRKKKLQQRIEEIQHSIQQESAA 413 (649)
Q Consensus 387 lp~eqr~~~l~~kl~el~~~i~k~~~~ 413 (649)
-+.-.|+.++++++.+++.++.....+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344567778888888887777665554
No 299
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.62 E-value=6e+02 Score=25.98 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 215 EKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNF 275 (649)
Q Consensus 215 eK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~ 275 (649)
+.+...+..+..+++.+.++-+.-+..++..+...|...+-..++..-.+.++.+..+..+
T Consensus 180 ~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 180 DLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555556666666666666666555555555555555544443
No 300
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=30.50 E-value=7.4e+02 Score=28.25 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 22 KYGHFIRDRCAIEMEYAGKLRRLVKN 47 (649)
Q Consensus 22 ~l~~f~keRa~iE~eYAk~L~kLakk 47 (649)
.|.+|+-.|-.+-.+|.++|..+-.+
T Consensus 15 kl~dWLv~Rr~~~~~w~~~~~~ir~k 40 (507)
T PF05600_consen 15 KLLDWLVDRRHCPKDWQKKLKAIREK 40 (507)
T ss_pred HHHHHHHHcCcCcHHHHHHHHHHHHH
Confidence 35556666666666666655554444
No 301
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=30.40 E-value=4.9e+02 Score=25.30 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 389 PSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDN--PNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 389 ~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~n--p~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
.+.|+..|.++|+-+++.+.....++.++......-... |.-.+..+-.++|.-+..+-..|.+....-+.-+..++.
T Consensus 69 AEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~ 148 (178)
T PF14073_consen 69 AETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEE 148 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999988765443222 211111222344444444444444444444445555555
No 302
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.34 E-value=2.2e+02 Score=22.59 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhh-hhhhHHHHHHHHHHHHHHHHHH
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHM-IEGQLSETDSRLEKLRGELQKY 457 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~-~~~~l~e~~~~l~~l~~~~~kl 457 (649)
+.-+.+|++++..++++|++...-+..=. .-..=| .+... -..++.++..++..|...+..|
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~----F~~kAP--~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNEN----FVEKAP--EEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTT----HHHHS---CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcc----ccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999998888888766553222 222234 34433 3567788888888888777655
No 303
>KOG4643|consensus
Probab=30.33 E-value=1.1e+03 Score=29.07 Aligned_cols=233 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHH
Q psy10868 59 YSTCKAFKCVLD---EVTDLAGQHEVIAENLQVFI--IKEVTIFVKDFKEERKKHLQDGARMMNLLENQ--VI-ALERAR 130 (649)
Q Consensus 59 ~t~~~aw~~ll~---e~~~~A~~H~~lae~L~~~v--~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~--~~-~l~k~k 130 (649)
+++-..|...+. +...++.-|+.+-+.|+... ...+..+.+.+...++++..+..-.+..+... .. +++++-
T Consensus 394 ss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~l 473 (1195)
T KOG4643|consen 394 SSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLL 473 (1195)
T ss_pred hhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcC
Q psy10868 131 KNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELS 210 (649)
Q Consensus 131 k~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~s 210 (649)
..|+....++.+++.+.+.....|+..- ..+........+-|..|..+....+....+.+........
T Consensus 474 s~~~Q~~~et~el~~~iknlnk~L~~r~-----------~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~- 541 (1195)
T KOG4643|consen 474 SLQDQLEAETEELLNQIKNLNKSLNNRD-----------LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGN- 541 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q psy10868 211 RAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPII 290 (649)
Q Consensus 211 k~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~ 290 (649)
+++-...+.+..+.+... ..=...+..-|.. ...|...+...++.|..+-..+-..=..+|++|.....-.....
T Consensus 542 ---lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~-lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ 616 (1195)
T KOG4643|consen 542 ---LEEENAHLLKQIQSLKTT-SQNGALLEQNNND-LELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRD 616 (1195)
T ss_pred ---HHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhh
Q ss_pred HHHHHHHHHHHHhhChHhHH
Q psy10868 291 NQCLDGIIKAADQINEKEDS 310 (649)
Q Consensus 291 ~~~~~~l~~~~~~Id~~~D~ 310 (649)
...+..= ....|.+..|.
T Consensus 617 ie~Lr~~--~~kll~~Kkdr 634 (1195)
T KOG4643|consen 617 IEWLRRK--ESKLLKEKKDR 634 (1195)
T ss_pred HHHHHHH--HHhhcchhHHH
No 304
>KOG0250|consensus
Probab=30.00 E-value=1.2e+03 Score=29.14 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHH
Q psy10868 176 VDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKT 233 (649)
Q Consensus 176 ~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~ 233 (649)
...+.+.|+.+...++....+..... +....++++..+++.....+.++...
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~------~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTN------NELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554444333220 22334556666666666666555544
No 305
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.90 E-value=6.2e+02 Score=25.86 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 117 NLLENQVIALERARKNYDKAYRESDKALEHYKRADAD 153 (649)
Q Consensus 117 ~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~ 153 (649)
+.|....+++..+++.+.....+.++++..+...+.+
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~e 67 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESE 67 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666655555555555555444433
No 306
>COG5283 Phage-related tail protein [Function unknown]
Probab=29.65 E-value=1.2e+03 Score=29.30 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=8.4
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy10868 225 SQHCEDTKTEYANQLQRANE 244 (649)
Q Consensus 225 ~~~~~~ak~eY~~~l~~~N~ 244 (649)
......++..|..+...+|+
T Consensus 161 ~~~~~gl~esf~~q~~aln~ 180 (1213)
T COG5283 161 DAKVVGLRESFGRQTEALNK 180 (1213)
T ss_pred HHhhhhHhHHHHHHHHHHHH
Confidence 33333444444444444443
No 307
>KOG0243|consensus
Probab=29.61 E-value=1.2e+03 Score=29.06 Aligned_cols=218 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 68 VLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHY 147 (649)
Q Consensus 68 ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~ 147 (649)
+.+....+......++..=..+-+=--..-..+.+..++.....+.++..++.+....+..+...|.........++.+.
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHH
Q psy10868 148 KRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQH 227 (649)
Q Consensus 148 ~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~ 227 (649)
++.+ ..|.....+|..-+..|.+.-..+. .-...-..+..+...+.....+++.....
T Consensus 486 ~~~k------------------~~L~~~~~el~~~~ee~~~~~~~l~----~~e~ii~~~~~se~~l~~~a~~l~~~~~~ 543 (1041)
T KOG0243|consen 486 EKLK------------------SKLQNKNKELESLKEELQQAKATLK----EEEEIISQQEKSEEKLVDRATKLRRSLEE 543 (1041)
T ss_pred HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHH------HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q psy10868 228 CEDTKT------EYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA 301 (649)
Q Consensus 228 ~~~ak~------eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~ 301 (649)
+...=. ++...+..-|......|...|+..+..+ ...-.......+.....+.......+...+......-
T Consensus 544 s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~---~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~ 620 (1041)
T KOG0243|consen 544 SQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTL---HGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMK 620 (1041)
T ss_pred HHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHH---HHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhh
Q ss_pred HhhChHhHH
Q psy10868 302 DQINEKEDS 310 (649)
Q Consensus 302 ~~Id~~~D~ 310 (649)
..+-+..|+
T Consensus 621 t~~~~~r~~ 629 (1041)
T KOG0243|consen 621 TKISKDRDI 629 (1041)
T ss_pred hhhhhHHHH
No 308
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.60 E-value=4.6e+02 Score=24.29 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10868 68 VLDEVTDLAGQHEVIA 83 (649)
Q Consensus 68 ll~e~~~~A~~H~~la 83 (649)
++.....-...++.+.
T Consensus 43 Ll~~~~r~~~~~e~l~ 58 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLS 58 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 309
>KOG0161|consensus
Probab=29.50 E-value=1.5e+03 Score=30.36 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYM 461 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l 461 (649)
..+..+...|++++.+++.+.+.+.+|..-..-++.. -..+..+|.+-...+..|...+.+..+.+
T Consensus 1294 r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e-----~~~l~e~leee~e~~~~l~r~lsk~~~e~ 1359 (1930)
T KOG0161|consen 1294 RDKQALESQLEELKRQLEEETREKSALENALRQLEHE-----LDLLREQLEEEQEAKNELERKLSKANAEL 1359 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999999999999998888766665443 23456666666666665555555554433
No 310
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=29.49 E-value=2e+02 Score=32.49 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=54.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10868 388 PPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEAN 467 (649)
Q Consensus 388 p~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~ 467 (649)
|..-...-++.+|.+|+.+|.......+.+.. + .+...+..++..+...+..|+..+..|+..|..+...
T Consensus 160 p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~-------~---~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 160 PRRVQIELIQERLDELEEQIEKHEEKLGELEL-------N---PDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhcccc-------c---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55666778899999999998887777766654 1 2333466778888889999999999999999988874
No 311
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=29.03 E-value=3.4e+02 Score=22.65 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHH
Q psy10868 397 QQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQK 456 (649)
Q Consensus 397 ~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~k 456 (649)
-..+++++..|.+....++-|.++...+-..|. +...+..+|..+...|..+-..++.
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~--~d~~~~~el~~l~~~i~~~~~~~~~ 63 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPD--QDSELKRELDELTDEIKQLFQKIKK 63 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888999999999999999999888875 2234555565555555544444433
No 312
>KOG0963|consensus
Probab=29.00 E-value=9.7e+02 Score=27.86 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy10868 170 KILRNQVDALERALKNYEKAFRDADKALEHYKRADA 205 (649)
Q Consensus 170 k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~ 205 (649)
..+.-...+|+.++.....+-++++..+.+..++..
T Consensus 235 aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 235 AEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555667777777777777777777766665543
No 313
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.80 E-value=6.9e+02 Score=26.52 Aligned_cols=127 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q psy10868 82 IAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMM------NLLENQVIALERARKNYDKAYRESDKALEHYKRADADLE 155 (649)
Q Consensus 82 lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~------~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~ 155 (649)
++..=...++..+..-..+..+.++.+.....++. ........++.+++.+-.....++.++.........++.
T Consensus 2 lC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 2 LCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp ----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHH
Q psy10868 156 LSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRI 219 (649)
Q Consensus 156 ~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~ 219 (649)
.-. .+.......-....+.|.....+.-......+...+........++++++
T Consensus 82 ~le-----------~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 82 ELE-----------EELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 314
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.78 E-value=9.4e+02 Score=27.66 Aligned_cols=297 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhc
Q psy10868 83 AENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHL 162 (649)
Q Consensus 83 ae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~ 162 (649)
+..|+..+ +.+..-..++.+....+......++.++.....+|...++....+.....++......+..+.+.-....
T Consensus 138 a~~lQ~ql-E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~- 215 (546)
T PF07888_consen 138 AQLLQNQL-EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL- 215 (546)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10868 163 QDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242 (649)
Q Consensus 163 ~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~ 242 (649)
......+..|+--.+.+....++.+.....+.....+....+.++..-.................+...+...
T Consensus 216 -------~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~L 288 (546)
T PF07888_consen 216 -------AEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEAL 288 (546)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhcchHHHHHHHHHHHHhhChHhHHHHHHHHhcCCC
Q psy10868 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANI-EKKVFPIINQCLDGIIKAADQINEKEDSALVIERYKSGF 321 (649)
Q Consensus 243 N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~-~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~fi~~~~s~~ 321 (649)
... |-..-..++.- +.-...|+.-|...+.. ...+.......++.-.-.+..-+....+...-..+..
T Consensus 289 keq--------Lr~~qe~lqaS-qq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~q-- 357 (546)
T PF07888_consen 289 KEQ--------LRSAQEQLQAS-QQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQ-- 357 (546)
T ss_pred HHH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccCCccCCCCCCCCCCCCCCchHHHHHHHHHHH
Q psy10868 322 TPPGDIPFEDLSRGGESTPIAPAFPHLMGMRPEAATVRGTMSAGRLKRRNNVGGFGSNGKDDFSNLPPSQRKKKLQQRIE 401 (649)
Q Consensus 322 ~~P~~~~FE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~lp~eqr~~~l~~kl~ 401 (649)
++-++....... ..|+.+|...++
T Consensus 358 --------------------------------Ek~~l~~~~e~~------------------------k~~ie~L~~el~ 381 (546)
T PF07888_consen 358 --------------------------------EKQALQHSAEAD------------------------KDEIEKLSRELQ 381 (546)
T ss_pred --------------------------------HHHHHHHHHHHh------------------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 402 EIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEG-QLSETDSRLEKLRGELQKYQTYMEES 464 (649)
Q Consensus 402 el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~-~l~e~~~~l~~l~~~~~kl~~~l~e~ 464 (649)
.+++.++.++.++..|. -++|...++-. +|.|..+.|.-|+..++-++..-+.+
T Consensus 382 ~~e~~lqEer~E~qkL~---------~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql 436 (546)
T PF07888_consen 382 MLEEHLQEERMERQKLE---------KQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQL 436 (546)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 315
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.67 E-value=3e+02 Score=27.55 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEAN 467 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~ 467 (649)
-.++..|+.|++++.++-+...++.+-+ ..-|+.-- -.-+.++...+.+..++.+|-.+.++|...+++++-.
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleel---e~e~ee~~--erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEEL---EAEYEEVQ--ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 4567778888887776665555544433 33332210 1123456666777778888888888888888888764
No 316
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.66 E-value=7.5e+02 Score=26.43 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 386 NLPPSQRKKKLQQRIEEIQHSIQQESAAREGLI 418 (649)
Q Consensus 386 ~lp~eqr~~~l~~kl~el~~~i~k~~~~~~gl~ 418 (649)
+||...-+..+.++|.+|++++.+.++++.-+.
T Consensus 284 nlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 284 NLPTRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555677777777777777777666655443
No 317
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=28.58 E-value=70 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=30.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 434 HMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 434 ~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
..|+.+|.++.++|+.++..+..|+..|+.|.|
T Consensus 17 ~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIpg 49 (148)
T PF10152_consen 17 SVCEEKLSDMEQRLQRLEATLNILEAKLSSIPG 49 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 347999999999999999999999999998866
No 318
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=28.42 E-value=6.2e+02 Score=25.40 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 27 IRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERK 106 (649)
Q Consensus 27 ~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK 106 (649)
+.|..++.+.--.+|.|.++.... .|-+...+=..+.+.++.++..+.---+.....+.-.+..+..++.+..+
T Consensus 7 ~ee~l~~d~~~l~~~kk~~k~~~~------sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~ 80 (215)
T cd07642 7 IEEALDVDRTVLYKMKKSVKAIHT------SGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFK 80 (215)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555545555665554422 12233334444455555555543322222233344444455555555555
Q ss_pred HHHHHH
Q psy10868 107 KHLQDG 112 (649)
Q Consensus 107 ~~~~~~ 112 (649)
.+.+..
T Consensus 81 ~L~~~~ 86 (215)
T cd07642 81 NLVQNM 86 (215)
T ss_pred HHHHHH
Confidence 554433
No 319
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.18 E-value=1.1e+03 Score=28.37 Aligned_cols=14 Identities=7% Similarity=0.430 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhh
Q psy10868 453 ELQKYQTYMEESEA 466 (649)
Q Consensus 453 ~~~kl~~~l~e~~~ 466 (649)
-+..+..+|+.+-.
T Consensus 706 A~~~l~~~ld~a~~ 719 (771)
T TIGR01069 706 ALDRLEKFLNDALL 719 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556677777654
No 320
>KOG4384|consensus
Probab=28.11 E-value=1e+02 Score=32.90 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCccEEEEcCCCCCC--CCCCCCCCCCCEEEEEeecCCCCcEEEEeCCCCceeccccCceeecccCC
Q psy10868 584 PPLGTAKALYPFEAT--SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIALDN 648 (649)
Q Consensus 584 ~~~~~~~alydf~~~--~~~els~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~syv~~~~~~~ 648 (649)
|..+.+.+.=+|... .-++|-+++|+++.+++.. +-|-|..-.. +..|-|+--||..+...+
T Consensus 134 p~c~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~-~~~~~~g~~~--~kv~~f~~~~v~~~s~e~ 197 (361)
T KOG4384|consen 134 PFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKP-PMGTWLGLLN--NKVGSFKFIYVDVISEEE 197 (361)
T ss_pred CccccccccccCCCCcccccchhhcccchhhccccC-cccccccccc--Ccccccccceeccccccc
Confidence 344556666677764 5679999999999999976 5587777764 388999999998876654
No 321
>PF02321 OEP: Outer membrane efflux protein; InterPro: IPR003423 The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm. Examples include the Escherichia coli TolC outer membrane protein, which is required for proper expression of outer membrane protein genes; the Rhizobium nodulation protein; and the Pseudomonas FusA protein, which is involved in resistance to fusaric acid.; GO: 0005215 transporter activity, 0006810 transport; PDB: 3PIK_A 1YC9_A 3D5K_C 1WP1_B 2XMN_C 2WMZ_B 1EK9_B 2VDD_C 1TQQ_A 2VDE_B ....
Probab=28.10 E-value=4.6e+02 Score=23.80 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy10868 210 SRAEVEKQRINMAIKSQHCEDTKTEYANQLQRAN 243 (649)
Q Consensus 210 sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N 243 (649)
+..++-.++..+.........++.+|..++..++
T Consensus 151 ~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~L~ 184 (188)
T PF02321_consen 151 SELDLLQAQAQLLQAQLQLIQAQNDLQIALAQLK 184 (188)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777777777776666554
No 322
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.05 E-value=3.4e+02 Score=30.32 Aligned_cols=43 Identities=5% Similarity=0.208 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGD 432 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd 432 (649)
..|+..+...+..+...+.....++.++..+.+.++++-.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (457)
T TIGR01000 164 QTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVAN 206 (457)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3567888999999999999999999999999999888765444
No 323
>KOG0804|consensus
Probab=27.95 E-value=8.8e+02 Score=27.05 Aligned_cols=6 Identities=33% Similarity=0.927 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy10868 271 NIRNFM 276 (649)
Q Consensus 271 ~lk~~l 276 (649)
.++++|
T Consensus 443 QlrDlm 448 (493)
T KOG0804|consen 443 QLRDLM 448 (493)
T ss_pred HHHhHh
Confidence 344443
No 324
>PRK00295 hypothetical protein; Provisional
Probab=27.25 E-value=3.3e+02 Score=21.91 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 440 LSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 440 l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
+.+-.+.|+.|+..+..+...|.++++
T Consensus 28 v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 28 LVEQQRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566778888888888777777764
No 325
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.21 E-value=1.4e+03 Score=29.06 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 442 ETDSRLEKLRGELQKYQTYMEESE 465 (649)
Q Consensus 442 e~~~~l~~l~~~~~kl~~~l~e~~ 465 (649)
.+...+..+..++..++.+++.++
T Consensus 471 ~~~~~~~~~~~~l~~~~~~~~~l~ 494 (1163)
T COG1196 471 ELQEELQRLEKELSSLEARLDRLE 494 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444433
No 326
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=27.13 E-value=1.3e+03 Score=28.76 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10868 440 LSETDSRLEKLRGELQK 456 (649)
Q Consensus 440 l~e~~~~l~~l~~~~~k 456 (649)
+.++..++..++.++..
T Consensus 478 l~~l~~~l~~l~~~~~~ 494 (1164)
T TIGR02169 478 YDRVEKELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344433333333
No 327
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=26.78 E-value=81 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=20.9
Q ss_pred CCCCCEEEEEeecCCCCcEEEEeCCCCceecccc
Q psy10868 605 MYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPT 638 (649)
Q Consensus 605 ~~~ge~l~v~~~~~~~gW~~v~~~~g~~~G~vP~ 638 (649)
+.+|+-|.|+....+..|..|.... -.|+||+
T Consensus 23 l~~gtPv~i~H~S~D~~W~fV~t~~--~~GWV~s 54 (54)
T PF12913_consen 23 LHPGTPVYILHTSRDGAWAFVQTPF--YSGWVKS 54 (54)
T ss_dssp E-TT-EEEEEEE-TTSSEEEEE-SS---EEEEEG
T ss_pred cCCCCCEEEEEECCCCCEEEEecCC--eeEeeeC
Confidence 4678899888876544799999863 5799985
No 328
>PRK09465 tolC outer membrane channel protein; Reviewed
Probab=26.78 E-value=8.6e+02 Score=26.51 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10868 213 EVEKQRINMAIKSQHCEDTKTEYANQLQRA 242 (649)
Q Consensus 213 eleK~~~k~~~~~~~~~~ak~eY~~~l~~~ 242 (649)
|+-.++..+.........++.+|...+...
T Consensus 388 dvl~a~~~l~~a~~~~~~a~~~~~~a~~~L 417 (446)
T PRK09465 388 DVLDATTTLYDAKQQLSNARYNYLINQLNL 417 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 329
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=26.68 E-value=6.5e+02 Score=25.09 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 28 RDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTI 96 (649)
Q Consensus 28 keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~ 96 (649)
.--+..-.-|-..|.|+......... .-.+..+...+.+-...+..+++.+-..+..+++.+|..
T Consensus 37 ~a~t~aa~~Yf~Al~KiGe~A~~s~~----s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEk 101 (215)
T cd07644 37 HALSEAAEVYFSAIAKIGEQALQSLT----SQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDK 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555677777777766544311 002555555555555555556666666666666655543
No 330
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=26.66 E-value=6.8e+02 Score=25.30 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10868 228 CEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIR 273 (649)
Q Consensus 228 ~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk 273 (649)
+.+-...-...|.-+......+....||.....+..++..|++...
T Consensus 103 ~~~~~~~L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~a 148 (229)
T PF06456_consen 103 LAKQGETLLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDA 148 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666777778888888888777777776544
No 331
>KOG0964|consensus
Probab=26.61 E-value=1.3e+03 Score=28.54 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHH
Q psy10868 96 IFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQ 175 (649)
Q Consensus 96 ~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~ 175 (649)
...++.+..++++...+.-+...|.....+=+-+.+ |++.-++...+.=.+.. .++...
T Consensus 177 kim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~-Yqkldk~rr~lEYtiYd--------------------rEl~E~ 235 (1200)
T KOG0964|consen 177 KIMEETKQKREKINELLKYIEERLRELEEEKEELEK-YQKLDKERRSLEYTIYD--------------------RELNEI 235 (1200)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhHhhhhhhhhh--------------------hHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Q psy10868 176 VDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA------------- 242 (649)
Q Consensus 176 ~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~------------- 242 (649)
...+++--..+.....+-+.....+.++..++.--+.++..+..++.....+-+.++.+|...+..-
T Consensus 236 ~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~ 315 (1200)
T KOG0964|consen 236 NGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQ 315 (1200)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q ss_pred ----------HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhhChHhHHHH
Q psy10868 243 ----------NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKEDSAL 312 (649)
Q Consensus 243 ----------N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~~Id~~~D~~~ 312 (649)
-.+...-+...++..-+.|-.++-.+-.....-=..-..+ .....-.+.+=.=.....++....+-..
T Consensus 316 i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl--~~l~~~~~~l~~Kqgr~sqFssk~eRDk 393 (1200)
T KOG0964|consen 316 ITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRL--AKLEQKQRDLLAKQGRYSQFSSKEERDK 393 (1200)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHHHHHHHhhccccccCcHHHHHH
Q ss_pred HHHHhcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccCCccCCCCCCCCCCCCCCchHH
Q psy10868 313 VIERYKSGFTPPGDIPFEDLSRGGESTPIAPAFPHLMGMRPEAATVRGTMSAGRLKRRNNVGGFGSNGKDDFSNLPPSQR 392 (649)
Q Consensus 313 fi~~~~s~~~~P~~~~FE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~lp~eqr 392 (649)
||++ +-..+++ .|..++ .+
T Consensus 394 wir~-------------------------------------ei~~l~~--------------~i~~~k----------e~ 412 (1200)
T KOG0964|consen 394 WIRS-------------------------------------EIEKLKR--------------GINDTK----------EQ 412 (1200)
T ss_pred HHHH-------------------------------------HHHHHHH--------------HHhhhh----------hH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10868 393 KKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHM----IEGQLSETDSRLEKLRGELQKYQTYMEESE 465 (649)
Q Consensus 393 ~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~----~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~ 465 (649)
...|+..+.+++.++.+.-.++..|..-.. ...-.+....+ +-+++.++..+...|+-+-.+++..++.+.
T Consensus 413 e~~lq~e~~~~e~~l~~~~e~i~~l~~si~--e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~ 487 (1200)
T KOG0964|consen 413 ENILQKEIEDLESELKEKLEEIKELESSIN--ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLE 487 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 332
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=26.47 E-value=6.8e+02 Score=25.22 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHH
Q psy10868 261 LQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGI 297 (649)
Q Consensus 261 lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l 297 (649)
|.+-+-+.+..|..++..-......+...+......|
T Consensus 180 il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L 216 (223)
T cd07592 180 LLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKL 216 (223)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555544444444444343333333
No 333
>smart00030 CLb CLUSTERIN Beta chain.
Probab=26.34 E-value=6.4e+02 Score=24.92 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=38.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 224 KSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVF-AQLQELDEKRVRNIRNFMVHSAN 281 (649)
Q Consensus 224 ~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~-~~lQ~lee~Ri~~lk~~l~~y~~ 281 (649)
....+++++.+=..+|..+|..+ .+-... +.+| ..|.++++++--+|++...+|..
T Consensus 48 ll~tLe~~kk~KeeAlk~~~e~e-~kL~E~-~~vCnetm~alWeECKpCLk~tCmkfYs 104 (206)
T smart00030 48 LLSTLEEAKKKKEEALKDTRESE-EKLKES-QGVCNETMMALWEECKPCLKQTCMKFYA 104 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445556666666677777773 333333 4444 78999999999999988888765
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=26.17 E-value=3.4e+02 Score=31.89 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CC-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 393 KKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNL-GD-----PHMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 393 ~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~-gd-----~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
.++++.++..|++.|++....+..|+... ..|.+ .+ ...+..++.++..+|+.+...--.++..|+++++
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~~ 633 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKL----GDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLL 633 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456677778888888888777777554 23433 22 2335667777777888887777778877877764
No 335
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.16 E-value=4.1e+02 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10868 213 EVEKQRINMAIKSQHCEDTKTEYANQLQRA 242 (649)
Q Consensus 213 eleK~~~k~~~~~~~~~~ak~eY~~~l~~~ 242 (649)
+++-++.++.........++.+|...+...
T Consensus 52 d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666777776555444
No 336
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.14 E-value=1.1e+03 Score=27.53 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 71 EVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVI---ALERARKNYDKAYRESDKALEHY 147 (649)
Q Consensus 71 e~~~~A~~H~~lae~L~~~v~~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~---~l~k~kk~y~~~~~e~~~a~~~~ 147 (649)
.....-..+..--+.|+.++ +.|..-+...+...+.+...+.++..++..... .+++..+...+.+.-..++...+
T Consensus 318 ~~~~~~~~~~~el~~l~~~l-~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni 396 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQL-DELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI 396 (594)
T ss_pred chhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Q ss_pred HHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHH
Q psy10868 148 KRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQH 227 (649)
Q Consensus 148 ~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~k~~~~~~~ 227 (649)
.+.+.-++.+..+- .+|-..|.....-|..-.......+...+. ...+-...+...+.+++.+...++.+.+.
T Consensus 397 ~kL~~~v~~s~~rl----~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~---e~~~~~~~ik~~r~~~k~~~~e~~~Kee~ 469 (594)
T PF05667_consen 397 AKLQALVEASEQRL----VELAQQWEKHRAPLIEEYRRLKEKASNRES---ESKQKLQEIKELREEIKEIEEEIRQKEEL 469 (594)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHhhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 228 CEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNF 275 (649)
Q Consensus 228 ~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~lee~Ri~~lk~~ 275 (649)
..+...+|...=...| +..|..-+-+|...+....++....+.+.
T Consensus 470 ~~qL~~e~e~~~k~~~---Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DT 514 (594)
T PF05667_consen 470 YKQLVKELEKLPKDVN---RSAYTRRILEIVKNIRKQKEEIEKILSDT 514 (594)
T ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 337
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.74 E-value=1.2e+02 Score=26.65 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=18.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 386 NLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMK 421 (649)
Q Consensus 386 ~lp~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~ 421 (649)
|||..+-..+|+-.|.+++-++......++|+.++.
T Consensus 60 ~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 60 HLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred hCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444444444433
No 338
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=25.65 E-value=3.1e+02 Score=25.99 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 35 MEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVI-------AENLQVFIIKEVTIFVKDFKEERKK 107 (649)
Q Consensus 35 ~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~l-------ae~L~~~v~~~L~~~~~e~~~~rK~ 107 (649)
..|+..|+.+..+....... ..+ .+..+|..+...+...+.--..- |..|+..+-..+..+..+.++.-|.
T Consensus 37 d~~~~~l~~~~~~l~eeik~-~n~-~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~ 114 (155)
T PF07464_consen 37 DSVAQQLQNVSSSLQEEIKD-ANP-EAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKE 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--SS-THHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCh-hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 108 HLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRA 150 (649)
Q Consensus 108 ~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka 150 (649)
+-.........|. ...|.-|+-....+.+...++..|
T Consensus 115 v~~~~~~~~e~l~------~~~K~~~D~~~k~~~~~~~~l~~a 151 (155)
T PF07464_consen 115 VSENSEGANEKLQ------PAIKQAYDDAVKAAQKVQKQLHEA 151 (155)
T ss_dssp HHS---SS-GGGH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
No 339
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.60 E-value=1.8e+02 Score=22.96 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLI 418 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~ 418 (649)
+.|+..|+..|..++..|.++...+.+-.
T Consensus 27 ~~RIa~L~aEI~R~~~~~~~K~a~r~AAe 55 (59)
T PF06698_consen 27 EERIALLEAEIARLEAAIAKKSASRAAAE 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888777776654
No 340
>KOG2070|consensus
Probab=25.59 E-value=1e+03 Score=26.96 Aligned_cols=59 Identities=12% Similarity=0.327 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 27 IRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQ 87 (649)
Q Consensus 27 ~keRa~iE~eYAk~L~kLakk~~~~~~~~~~~~t~~~aw~~ll~e~~~~A~~H~~lae~L~ 87 (649)
++.-.+-|++|++.|++|-..|..-...... =...-+..++...+.+...|+.+.+.|.
T Consensus 106 Lk~~lesEkey~~eLq~lL~t~L~Plq~s~i--Ls~~ey~~LmgNfeeI~t~~qdL~~qlE 164 (661)
T KOG2070|consen 106 LKNILESEKEYSKELQTLLSTYLRPLQTSEI--LSSAEYSYLMGNFEEICTFQQDLVQQLE 164 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHhcchHHhHhHHHHHHHHHH
Confidence 5666788999999999999998754321110 1233456677777888888888877774
No 341
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=25.41 E-value=7.3e+02 Score=25.25 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q psy10868 258 FAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAAD 302 (649)
Q Consensus 258 ~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~~~~~~l~~~~~ 302 (649)
+..+.-+..+|+..++..|..|..-...+.. +..+.|+.++.
T Consensus 193 lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq---~i~~kLe~a~~ 234 (237)
T PF10456_consen 193 LAEMNHFHQERVEDFKSMMKTYLQQQIAFYQ---QIAEKLEQALQ 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3444555677777788888777776655533 33344444443
No 342
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=25.24 E-value=3.6e+02 Score=26.13 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEE 463 (649)
Q Consensus 390 eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e 463 (649)
+.++..+..+|++|+..++.+-+.+..-.=|+.- ..+.|+..+|..|++-+.+++.....
T Consensus 91 e~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr--------------~e~ee~~~~l~~le~~~~~~e~~~~~ 150 (175)
T PRK13182 91 EAQLNTITRRLDELERQLQQKADDVVSYQLLQHR--------------REMEEMLERLQKLEARLKKLEPIYIT 150 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6779999999999999999999999888878776 57889999999999999996654433
No 343
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.11 E-value=2.5e+02 Score=24.67 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=21.1
Q ss_pred hhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 425 EDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYM 461 (649)
Q Consensus 425 ~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l 461 (649)
..=|.-.|-..+.-.+.++.-++..+.+.+.-+...+
T Consensus 59 ~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 59 EHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3346555555566666666666666666665554443
No 344
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.42 E-value=1.1e+03 Score=26.84 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 92 KEVTIFVKDFKEERKKHLQDGARMMNLLENQ 122 (649)
Q Consensus 92 ~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~ 122 (649)
..++.-..+....++.+..++.+++..+.+.
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555544444
No 345
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.15 E-value=1.8e+02 Score=32.48 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLG-DPHMIEGQLSETDSRLEKLRGELQKYQTYMEES 464 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~g-d~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~ 464 (649)
.++..|...+.+++.++++..+.+..+.++...+...|..- --..+...+.++..++..|..++..++.+|...
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34466666666666666666655444444333211111000 001134444455555555555555555555554
No 346
>KOG3801|consensus
Probab=24.08 E-value=2.1e+02 Score=24.51 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10868 416 GLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTY 460 (649)
Q Consensus 416 gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~ 460 (649)
.+.+..+.+..|-...||..+...+.|..+.|..++-...-.+.+
T Consensus 32 ~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~~lY 76 (94)
T KOG3801|consen 32 FQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIGQLY 76 (94)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456778889999999999999999999999999888766554443
No 347
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=23.74 E-value=1.1e+03 Score=26.84 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hhHhhhhhhhcccch
Q psy10868 99 KDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRAD------------ADLELSRAEHLQDGD 166 (649)
Q Consensus 99 ~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~------------~~l~~~r~~~~~~~~ 166 (649)
...+..+-+++.++....+.+.+....|+++...-..+..+..-++.+..... .+|+..|-. |.
T Consensus 51 ~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q----~~ 126 (522)
T PF05701_consen 51 EAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQ----YA 126 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHH----HH
Confidence 33444445555555555555555555555555544444444443333333322 223333322 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10868 167 HLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRA-------EVEKQRINMAIKSQHCEDTKTEYANQL 239 (649)
Q Consensus 167 ~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~-------eleK~~~k~~~~~~~~~~ak~eY~~~l 239 (649)
..+..|......|.+.++.|.........|..+...+......... +|..++.-+.........+..+....+
T Consensus 127 ~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~ 206 (522)
T PF05701_consen 127 SAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIA 206 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666554444444433333322222222 222222222222222334444444433
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHH
Q psy10868 240 QRANEMQRQHYTQAMPEVFAQLQELDE 266 (649)
Q Consensus 240 ~~~N~~q~~~y~~~mp~i~~~lQ~lee 266 (649)
...... ...|...|...-..++.|..
T Consensus 207 ~~~~~~-~~~~~~~leeae~~l~~L~~ 232 (522)
T PF05701_consen 207 AEREQD-AEEWEKELEEAEEELEELKE 232 (522)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 333332 44555555555444444444
No 348
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=23.70 E-value=5.2e+02 Score=22.95 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
|....|+++|++|+.++.+-.+.. ... -..+..++.|+-.++..|+....+++.-++++..
T Consensus 8 ~q~~~l~~~v~~lRed~r~SEdrs-a~S--------------Ra~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSEDRS-AAS--------------RASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhh--------------hHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 456677788888877776322211 110 1235778888888999998888888888877643
No 349
>KOG3725|consensus
Probab=23.43 E-value=8.2e+02 Score=25.12 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 61 TCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVK 99 (649)
Q Consensus 61 ~~~aw~~ll~e~~~~A~~H~~lae~L~~~v~~~L~~~~~ 99 (649)
...+.-.+-+.-..++..-+.+...-....+-||+.|+.
T Consensus 111 YG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlE 149 (375)
T KOG3725|consen 111 YGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLE 149 (375)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhh
Confidence 344444445555566666666666666667778777753
No 350
>KOG4674|consensus
Probab=23.42 E-value=1.9e+03 Score=29.31 Aligned_cols=106 Identities=14% Similarity=0.215 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhcccchhHHHHH
Q psy10868 93 EVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKIL 172 (649)
Q Consensus 93 ~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l 172 (649)
.|+.+-.+++..++.-......++.++.....++..+++...+.-.+..=|+.+|+-+...|+..|-+. ..|
T Consensus 637 ~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~--------~tL 708 (1822)
T KOG4674|consen 637 RLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEV--------ETL 708 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 344555555555555666666777777777777777777777777777778888888888877777665 333
Q ss_pred HHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHhhhh
Q psy10868 173 RNQVDAL----ERALKNYEKAFRDADKALEHYKRADAD 206 (649)
Q Consensus 173 ~~~~~~l----~KaKk~Y~~~~re~e~a~~k~~ka~~d 206 (649)
......+ .+.+..-+....++-.+..+..++.+.
T Consensus 709 ~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~e 746 (1822)
T KOG4674|consen 709 EERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAE 746 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333 233333344444444444444444443
No 351
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.34 E-value=5.3e+02 Score=22.88 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10868 388 PPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYE 425 (649)
Q Consensus 388 p~eqr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~ 425 (649)
.-+.|+..|+.-|+.+...+....+++++|......-.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~ 50 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQ 50 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Confidence 34677888888888888888888888888776665543
No 352
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.34 E-value=1.3e+02 Score=24.22 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 391 QRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVY 424 (649)
Q Consensus 391 qr~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y 424 (649)
.+...+++++.+++.++++.+++.+-|..-.+..
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777777777777777777766666555554
No 353
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=22.96 E-value=8.2e+02 Score=24.96 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy10868 178 ALERALKNYEKAFRDADKALEHYKRADADLELSR---------AEVEKQRINMAIKSQHCEDTKTEYANQLQRANEM 245 (649)
Q Consensus 178 ~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk---------~eleK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~ 245 (649)
...+|-..|+++.-..+.|++....++..+.... ..|..+..++.........+..+.......++..
T Consensus 78 e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~a 154 (239)
T PF05276_consen 78 EAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEA 154 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677777666677766666654432211 2333444555555555566666665555555444
No 354
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.89 E-value=1.4e+03 Score=27.63 Aligned_cols=108 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhcCHHHHHHHHH
Q psy10868 140 SDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRI 219 (649)
Q Consensus 140 ~~~a~~~~~ka~~~l~~~r~~~~~~~~~~~k~l~~~~~~l~KaKk~Y~~~~re~e~a~~k~~ka~~d~~~sk~eleK~~~ 219 (649)
...|+.-+.... ..++..+..|+.-++.++..-.+++......++....+. ++...
T Consensus 504 i~~A~~~~~~~~------------------~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~------~~~~~ 559 (782)
T PRK00409 504 IEEAKKLIGEDK------------------EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELE------EKKEK 559 (782)
T ss_pred HHHHHHHHhhhh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q psy10868 220 NMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQE--------LDEKRVRNIRNFMVHS 279 (649)
Q Consensus 220 k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y~~~mp~i~~~lQ~--------lee~Ri~~lk~~l~~y 279 (649)
-.++......+++++|...+..+... ...++..+++ ...+.+......+...
T Consensus 560 l~~~~~~~~~~~~~~a~~~l~~a~~~--------~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~ 619 (782)
T PRK00409 560 LQEEEDKLLEEAEKEAQQAIKEAKKE--------ADEIIKELRQLQKGGYASVKAHELIEARKRLNKA 619 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
No 355
>KOG2264|consensus
Probab=22.66 E-value=3.4e+02 Score=31.03 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10868 393 KKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEAN 467 (649)
Q Consensus 393 ~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~ 467 (649)
+..|+.|-++|+.+|++-...+|.+.+++ .....+|..|+.++..-|..+.|+..+
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~~i-------------------~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKRLI-------------------PQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------------------HHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 44566666666666666666666655443 345667888999999999999998873
No 356
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.56 E-value=98 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=17.6
Q ss_pred CCCCCCCEEEEEeec-----CCCCcEEEEeC
Q psy10868 603 IPMYDGEELYIIELD-----QGDGWTRVRRQ 628 (649)
Q Consensus 603 ls~~~ge~l~v~~~~-----~~~gW~~v~~~ 628 (649)
|++++|+.+.|-... ...+||-+.-.
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi 34 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQVI 34 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEEE
Confidence 789999998554432 02379988743
No 357
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.45 E-value=7.5e+02 Score=24.33 Aligned_cols=33 Identities=3% Similarity=0.076 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchH
Q psy10868 259 AQLQELDEKRVRNIRNFMVHSANIEKKVFPIIN 291 (649)
Q Consensus 259 ~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~~~~~ 291 (649)
+.+-.--..++..++..+..|..+...+-..+.
T Consensus 150 da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s 182 (193)
T PF14662_consen 150 DAILSERTQQIEELKKTIEEYRSITEELRLEKS 182 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445666677777777766555443333
No 358
>PF13514 AAA_27: AAA domain
Probab=22.08 E-value=1.6e+03 Score=28.17 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhcC
Q psy10868 37 YAGKLRRLVKNYQP 50 (649)
Q Consensus 37 YAk~L~kLakk~~~ 50 (649)
|...+..|+..+..
T Consensus 762 f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 762 FEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHcCc
Confidence 44455566655543
No 359
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.98 E-value=9.1e+02 Score=25.11 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy10868 450 LRGELQKYQTYM 461 (649)
Q Consensus 450 l~~~~~kl~~~l 461 (649)
|..+|..|..-|
T Consensus 295 Ld~EIatYR~LL 306 (312)
T PF00038_consen 295 LDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 360
>KOG0018|consensus
Probab=21.63 E-value=1.6e+03 Score=27.95 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10868 436 IEGQLSETDSRLEKLRGELQKYQTYMEESEAN 467 (649)
Q Consensus 436 ~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~ 467 (649)
..++|+++.++|+..+.+...|+.....++.+
T Consensus 723 ~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 723 FGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888877777763
No 361
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.40 E-value=8.8e+02 Score=24.74 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCc-ccccc-cccHHHHHHHHHHHHH
Q psy10868 27 IRDRCAIEMEYAGKLRRLVKNYQPKK-EEEDY-QYSTCKAFKCVLDEVT 73 (649)
Q Consensus 27 ~keRa~iE~eYAk~L~kLakk~~~~~-~~~~~-~~t~~~aw~~ll~e~~ 73 (649)
+..|+..=+.|-+.+.+.++.|..-. +-|.+ .-++..-|.++..-+.
T Consensus 3 Le~~~D~lk~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~ 51 (242)
T cd07600 3 LEQRVDALKLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVS 51 (242)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHH
Confidence 44555544667778888888885431 11110 1145555655444433
No 362
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.31 E-value=2.4e+02 Score=26.66 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=40.4
Q ss_pred HHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10868 417 LIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANS 468 (649)
Q Consensus 417 l~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~ 468 (649)
+.||+..|..--.-.|..++++-|.+...+++.++.+...++..+..++...
T Consensus 25 l~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 25 LRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554434457778999999999999999999999999999998853
No 363
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=21.27 E-value=7.4e+02 Score=23.82 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHH
Q psy10868 214 VEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHY 250 (649)
Q Consensus 214 leK~~~k~~~~~~~~~~ak~eY~~~l~~~N~~q~~~y 250 (649)
...+...+.........++..|..++..+|.....|=
T Consensus 120 ~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~FP 156 (186)
T PF04011_consen 120 FQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQFP 156 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666677777788899999999999998865543
No 364
>smart00150 SPEC Spectrin repeats.
Probab=21.17 E-value=4.5e+02 Score=21.32 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q psy10868 392 RKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQ 455 (649)
Q Consensus 392 r~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~ 455 (649)
-...+..+...++.+|......++.+..+-+...+.. -.+...|...+.++..+-+.|.....
T Consensus 32 ~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~~ 94 (101)
T smart00150 32 SVEALLKKHEALEAELEAHEERVEALNELGEQLIEEG-HPDAEEIEERLEELNERWEELKELAE 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777889999999999999999998887776541 13444466655555555555544443
No 365
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=21.05 E-value=1.3e+03 Score=26.42 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 6 YDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAG 39 (649)
Q Consensus 6 f~~L~~~~~~gi~~~e~l~~f~keRa~iE~eYAk 39 (649)
|..|..-++.-.+.++++..-+..|+.+|.+.=.
T Consensus 170 ~~~l~~~l~~l~d~~k~~sk~y~~k~~~E~~~pt 203 (518)
T PF10212_consen 170 FTQLAASLHKLHDVLKDLSKHYNQKASLEHRLPT 203 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 4455556666677888999999999999987643
No 366
>KOG0979|consensus
Probab=21.03 E-value=1.6e+03 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=12.5
Q ss_pred hHhHHHHHHHHhcCCCCC
Q psy10868 306 EKEDSALVIERYKSGFTP 323 (649)
Q Consensus 306 ~~~D~~~fi~~~~s~~~~ 323 (649)
--.|.-.++++|++-|..
T Consensus 431 d~~dAy~wlrenr~~FK~ 448 (1072)
T KOG0979|consen 431 DAYDAYQWLRENRSEFKD 448 (1072)
T ss_pred HHHHHHHHHHHCHHHhcc
Confidence 345667788888876654
No 367
>PRK00846 hypothetical protein; Provisional
Probab=20.91 E-value=4.9e+02 Score=21.64 Aligned_cols=28 Identities=4% Similarity=0.020 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10868 440 LSETDSRLEKLRGELQKYQTYMEESEAN 467 (649)
Q Consensus 440 l~e~~~~l~~l~~~~~kl~~~l~e~~~~ 467 (649)
+....+.|+.|+..+.-+...|.+++..
T Consensus 36 v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 36 LADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455677888888888888888888754
No 368
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.67 E-value=8.9e+02 Score=24.52 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10868 92 KEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRE 139 (649)
Q Consensus 92 ~~L~~~~~e~~~~rK~~~~~~~kl~~~l~~~~~~l~k~kk~y~~~~~e 139 (649)
..+..-...+...|..|.++++.++.+...+.+-+..++....+....
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455566666666666655555544444444444443333
No 369
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=20.64 E-value=1.2e+03 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10868 23 YGHFIRDRCAIEMEYAGKLRRLVKNYQPK 51 (649)
Q Consensus 23 l~~f~keRa~iE~eYAk~L~kLakk~~~~ 51 (649)
+..++++-.++|.+=|.-|..|+.-|-..
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt~HfDqC 222 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLTNHFDQC 222 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888889999999999998887544
No 370
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.58 E-value=5.6e+02 Score=22.12 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10868 392 RKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEAN 467 (649)
Q Consensus 392 r~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~ 467 (649)
|..++...+..|...+......-++|. ...++|..+..++..|+...+.|..|...++.+
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k~~~l~----------------~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQKYEELQ----------------PYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443333332 234567888889999999999999998888764
No 371
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.55 E-value=8.1e+02 Score=23.97 Aligned_cols=32 Identities=9% Similarity=0.361 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10868 256 EVFAQLQELDEKRVRNIRNFMVHSANIEKKVF 287 (649)
Q Consensus 256 ~i~~~lQ~lee~Ri~~lk~~l~~y~~~~~~~~ 287 (649)
.+...+..++..+...|+.+|..|+.....+.
T Consensus 156 ~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~ 187 (200)
T cd07624 156 DLKADLERWKQNKRQDLKKILLDMAEKQIQYY 187 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999999999999998866653
No 372
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.35 E-value=8.1e+02 Score=26.25 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy10868 393 KKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANSP 469 (649)
Q Consensus 393 ~~~l~~kl~el~~~i~k~~~~~~gl~km~~~y~~np~~gd~~~~~~~l~e~~~~l~~l~~~~~kl~~~l~e~~~~~~ 469 (649)
.+.....+.-+++++.+.++..+..+.-...|+..-.+-||.. +.......+..|+.++..++..|+++....+
T Consensus 165 ~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~---~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~ 238 (362)
T TIGR01010 165 ERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKA---QSSAQLSLISTLEGELIRVQAQLAQLRSITP 238 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3345566777788888888888888888888888766666544 2333445677888888888888888876443
No 373
>PRK04406 hypothetical protein; Provisional
Probab=20.26 E-value=5e+02 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10868 440 LSETDSRLEKLRGELQKYQTYMEESEA 466 (649)
Q Consensus 440 l~e~~~~l~~l~~~~~kl~~~l~e~~~ 466 (649)
+.+-.+.|+.|+..+..+...|.+++.
T Consensus 34 v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 34 LSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445566788888888888788877764
Done!