RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10868
(649 letters)
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 198 bits (505), Expect = 1e-58
Identities = 128/342 (37%), Positives = 198/342 (57%), Gaps = 56/342 (16%)
Query: 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPK---KEEEDYQ 58
DQ+DNL HTQ GID LEKY F+++R IE+ YA +LR L K YQPK KEEE+Y+
Sbjct: 12 LWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYK 71
Query: 59 YSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNL 118
Y++CKAF L+E+ D AGQHEVI+EN+ II ++ +V++ K+ERK + DG +
Sbjct: 72 YTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQH 131
Query: 119 LENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDA 178
+E LE +++ +++ +E
Sbjct: 132 IETCWKQLESSKRRFERDCKE--------------------------------------- 152
Query: 179 LERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQ 238
AD+A +++++ DAD+ +++A+VEK R I+ Q ED+K +Y++
Sbjct: 153 --------------ADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSI 198
Query: 239 LQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGII 298
LQ+ N Q ++Y +P +F ++QE++E+R+ + M A ++++V PII +CLDGI+
Sbjct: 199 LQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIV 258
Query: 299 KAADQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGGESTP 340
KAA+ I++K DS LVIE YKSGF PPGDI FED ++ + T
Sbjct: 259 KAAESIDQKNDSQLVIEAYKSGFEPPGDIEFEDYTQPMKRTV 300
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 198 bits (503), Expect = 2e-58
Identities = 112/340 (32%), Positives = 178/340 (52%), Gaps = 56/340 (16%)
Query: 4 DQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKK---EEEDYQYS 60
Q++ L HTQ G+D L++Y F+++R +E YA +LR LVK Y PK+ ++ + ++S
Sbjct: 7 GQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFS 66
Query: 61 TCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLE 120
++F +L EV D AGQ E++AENL V + E+T + ++ K+ERK H Q+G R LE
Sbjct: 67 QQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLE 126
Query: 121 NQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALE 180
N LE +++ +++ RE
Sbjct: 127 NGFKQLENSKRKFERDCRE----------------------------------------- 145
Query: 181 RALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQ 240
A+KA + +R D D+ ++A+VEK + ++S E++K EYA QLQ
Sbjct: 146 ------------AEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQ 193
Query: 241 RANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKA 300
R N Q Y MP++F +LQ++DE+R + + E +V PII +CL+G+ A
Sbjct: 194 RFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVA 253
Query: 301 ADQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGGESTP 340
A+ ++ K DS ++IE +KSGF PGD+ FED S+ P
Sbjct: 254 ANAVDPKNDSHVLIELHKSGFARPGDVEFEDFSQPMNRAP 293
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 179 bits (454), Expect = 3e-50
Identities = 60/468 (12%), Positives = 142/468 (30%), Gaps = 82/468 (17%)
Query: 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKE-EEDYQYST 61
+ L + + LE ++ R + EYAG L + +
Sbjct: 11 PQGHGVLQQMQEAELRLLEGMRKWMAQRVKSDREYAGLLHHMSLQDSGGQSRAISPDSPI 70
Query: 62 CKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLEN 121
+++ + + L+ AE+L + ++++ +++ ++ RK + + ++
Sbjct: 71 SQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQ---- 126
Query: 122 QVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALER 181
++ + +E+
Sbjct: 127 ------------------------------------------------ELTKTHSQDIEK 138
Query: 182 ALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQR 241
Y RD+ +A Y+ A D + +A+ + R Y ++
Sbjct: 139 LKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWK-----LFAHHNRYVLGVRA 193
Query: 242 ANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA 301
A + H+ +P + LQ+L E+ ++ + I V + + AA
Sbjct: 194 AQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISSLVQDEVVAIHREMAAAA 253
Query: 302 DQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGGESTPIAPAFPHLMGMRPEAATVRGT 361
+I + + + +Y S P + F++ S E P+ P L + E+ T
Sbjct: 254 ARIQPEAEYQGFLRQYGSAPDVPPCVTFDE-SLLEEGEPLEPGELQLNELTVESVQHTLT 312
Query: 362 MSAGRLKRRNNVGGFGSNGKDDFSNLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMK 421
L + + Q+ + ++Q ++ E +++
Sbjct: 313 SVTDELAVAT-------------------EMVFRRQEMVTQLQQELRNEEENTHPRERVQ 353
Query: 422 GVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQTYMEESEANSP 469
+ + L KL+ + + QT +E P
Sbjct: 354 LLGKRQVLQEALQ----GLQVALCSQAKLQAQQELLQTKLEHLGPGEP 397
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 161 bits (408), Expect = 6e-45
Identities = 49/332 (14%), Positives = 103/332 (31%), Gaps = 48/332 (14%)
Query: 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTC 62
Y G + + +R IE YA +L + ++ E+ +
Sbjct: 28 VGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVE 87
Query: 63 KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQ 122
KA+ + E ++ H + +L +++ + K
Sbjct: 88 KAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQK----------------------- 124
Query: 123 VIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA 182
E + + E K ++ +E A
Sbjct: 125 ----------------------EAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAA 162
Query: 183 LKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242
K + A ++ A+ + AD L+ +++K + + Q TK +Y L+
Sbjct: 163 KKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 222
Query: 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFM-VHSANIEKKVFPIINQCLDGIIKAA 301
++ Y + M +VF Q Q+ +EKR+R R + +++ + ++
Sbjct: 223 DQ-GTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSI 281
Query: 302 DQINEKEDSALVIERYKSGFTPPGDIPFEDLS 333
+ ED + G FE+ S
Sbjct: 282 RAADAVEDLRWFRANHGPGMAMN-WPQFEEWS 312
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 160 bits (406), Expect = 8e-45
Identities = 48/332 (14%), Positives = 102/332 (30%), Gaps = 49/332 (14%)
Query: 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTC 62
Y + + G I++R IE YA LR K + E+ +T
Sbjct: 7 PGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTE 66
Query: 63 KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQ 122
A+K VL E ++ H I +NL + ++ + K+
Sbjct: 67 AAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQ-------------- 112
Query: 123 VIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA 182
+ RK+ K + +E+A
Sbjct: 113 ----IKERKD----------------------------LEDLFKKAQKPWAKLLAKVEKA 140
Query: 183 LKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242
+Y A + A + A+AD LS +V+K + + + +Y +
Sbjct: 141 KADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEI 200
Query: 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFM-VHSANIEKKVFPIINQCLDGIIKAA 301
+ Y + M VF + Q ++ R++ + + + ++ + Q +
Sbjct: 201 TK-YNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTI 259
Query: 302 DQINEKEDSALVIERYKSGFTPPGDIPFEDLS 333
+ ++++D + F + +
Sbjct: 260 NNADQQKDLKWWSNNHGINMAMNWP-SFVEYT 290
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 160 bits (406), Expect = 2e-44
Identities = 46/332 (13%), Positives = 100/332 (30%), Gaps = 48/332 (14%)
Query: 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTC 62
Y + G ++R IE YA +L + ++ E+ +
Sbjct: 19 AGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKGPQYGTLE 78
Query: 63 KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQ 122
KA+ L+ H + E L + V + +
Sbjct: 79 KAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQR----------------------- 115
Query: 123 VIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA 182
+ R + K ++ +E +
Sbjct: 116 ----------------------GAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEAS 153
Query: 183 LKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242
K+Y A +D A A AD +S+ ++ K + + ++ E KT+Y L
Sbjct: 154 KKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAEL 213
Query: 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFM-VHSANIEKKVFPIINQCLDGIIKAA 301
N Y + M + F Q + +R+ ++ + +++ ++ + ++
Sbjct: 214 NRY-TPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHRDLQQSI 272
Query: 302 DQINEKEDSALVIERYKSGFTPPGDIPFEDLS 333
+ +++ED + G FE+ S
Sbjct: 273 EAASDEEDLRWWRSTHGPGMAMN-WPQFEEWS 303
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 158 bits (399), Expect = 3e-43
Identities = 49/332 (14%), Positives = 103/332 (31%), Gaps = 48/332 (14%)
Query: 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTC 62
Y G + + +R IE YA +L + ++ E+ +
Sbjct: 28 VGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVE 87
Query: 63 KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQ 122
KA+ + E ++ H + +L +++ + K
Sbjct: 88 KAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQK----------------------- 124
Query: 123 VIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA 182
E + + E K ++ +E A
Sbjct: 125 ----------------------EAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAA 162
Query: 183 LKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242
K + A ++ A+ + AD L+ +++K + + Q TK +Y L+
Sbjct: 163 KKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 222
Query: 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFM-VHSANIEKKVFPIINQCLDGIIKAA 301
++ Y + M +VF Q Q+ +EKR+R R + +++ + ++
Sbjct: 223 DQ-GTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSI 281
Query: 302 DQINEKEDSALVIERYKSGFTPPGDIPFEDLS 333
+ ED + G FE+ S
Sbjct: 282 RAADAVEDLRWFRANHGPGMAMN-WPQFEEWS 312
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 149 bits (377), Expect = 3e-40
Identities = 49/360 (13%), Positives = 105/360 (29%), Gaps = 48/360 (13%)
Query: 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTC 62
Y G +++R IE YA +L K ++ E+ S
Sbjct: 19 VGNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLE 78
Query: 63 KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQ 122
+A+ ++ E ++ H+ + +L +++V + K
Sbjct: 79 RAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQK----------------------- 115
Query: 123 VIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA 182
+ Y + E K ++ LE A
Sbjct: 116 ----------------------DAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAA 153
Query: 183 LKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242
K Y A ++ A+ + + ++ + +K + Q + T+ +Y L+
Sbjct: 154 KKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDV 213
Query: 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFM-VHSANIEKKVFPIINQCLDGIIKAA 301
+ Y + M +VF Q Q+ +EKR+ ++ + ++ + +A
Sbjct: 214 GK-TTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRELEQAI 272
Query: 302 DQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGGESTPIAPAFPHLMGMRPEAATVRGT 361
+ +ED G FE+ + T + G
Sbjct: 273 RGADAQEDLRWFRSTSGPGMPMN-WPQFEEWNPDLPHTTAKKEKQPKKAEGATLSNATGA 331
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 132 bits (332), Expect = 1e-34
Identities = 45/326 (13%), Positives = 109/326 (33%), Gaps = 71/326 (21%)
Query: 6 YDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAF 65
+D L + + G ++ F+R+R IE Y+ + +L K+ + + +
Sbjct: 20 FDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQL----GTFAPVW 75
Query: 66 KCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIA 125
LA H + LQ +
Sbjct: 76 DVFKTSTEKLANCHLDLVRKLQ---------------------------------ELIKE 102
Query: 126 LERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKN 185
+++ + K+++++ E + ++ +++ AL+++ +N
Sbjct: 103 VQKYGEEQVKSHKKTK------------------EEVAGTLEAVQTIQSITQALQKSKEN 144
Query: 186 YEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEM 245
Y + ++ + +++ A+KS+ D Y +++
Sbjct: 145 YNAKCVEQERLKKEGAT------------QREIEKAAVKSKKATD---TYKLYVEKYAL- 188
Query: 246 QRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQIN 305
+ + Q M E + Q+++E + +I+ + +N K++ I Q + I
Sbjct: 189 AKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANTT 248
Query: 306 EKEDSALVIERYKSGFTPPGDIPFED 331
+ E +G PG I FE+
Sbjct: 249 VESLIQKFAESKGTGKERPGLIEFEE 274
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 132 bits (333), Expect = 2e-33
Identities = 48/329 (14%), Positives = 104/329 (31%), Gaps = 47/329 (14%)
Query: 3 QDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTC 62
Y G + + +R IE YA +L + ++ E+ +
Sbjct: 21 VGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVE 80
Query: 63 KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQ 122
KA+ + E ++ H + +L +++ + K+ + Q
Sbjct: 81 KAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHK-----------------Q 123
Query: 123 VIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA 182
++ + K E K ++ +E A
Sbjct: 124 MMGGFKETK----------------------------EAEDGFRKAQKPWAKKLKEVEAA 155
Query: 183 LKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRA 242
K + A ++ A+ + AD L+ +++K + + Q TK +Y L+
Sbjct: 156 KKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 215
Query: 243 NEMQRQHYTQAMPEVFAQLQELDEKRVRNIRN-FMVHSANIEKKVFPIINQCLDGIIKAA 301
++ Y + M +VF Q Q+ +EKR+R R + +++ + ++
Sbjct: 216 DQ-GTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSI 274
Query: 302 DQINEKEDSALVIERYKSGFTPPGDIPFE 330
+ ED + G E
Sbjct: 275 RAADAVEDLRWFRANHGPGMAMNWPQFEE 303
Score = 54.0 bits (128), Expect = 1e-07
Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 2/147 (1%)
Query: 498 QTQQQRVNVNGGSNNNRDERANSAGEEEESLSRSASDSSVHNNNHSKLNSSSTQLPNISL 557
+ V N + N +E+++ S + N S + + + S
Sbjct: 341 PSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSD 400
Query: 558 YQREEPDIGTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELD 617
+ ++ + + + +ALY +E + G+EL +E +
Sbjct: 401 DE-SNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDE 459
Query: 618 QGDGWTRVRRQTDSEEGFVPTSYIQTI 644
GW + R + + G P +Y++ I
Sbjct: 460 DEQGWCKGRLD-NGQVGLYPANYVEAI 485
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative
splicing, cell membrane, coiled coil, cytoplasm,
cytoskeleton, endocytosis; NMR {Homo sapiens}
Length = 98
Score = 110 bits (277), Expect = 3e-29
Identities = 42/95 (44%), Positives = 66/95 (69%)
Query: 377 GSNGKDDFSNLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMI 436
G + +DFS+LPP Q++K+LQQ++EE +Q+E RE L KMK VYE P +GDP +
Sbjct: 1 GPHMTEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL 60
Query: 437 EGQLSETDSRLEKLRGELQKYQTYMEESEANSPAG 471
E Q++ET S +E+L+ E+QKY+ ++ E+E+ +
Sbjct: 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESRVLSN 95
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 95.7 bits (237), Expect = 4e-22
Identities = 36/274 (13%), Positives = 86/274 (31%), Gaps = 34/274 (12%)
Query: 4 DQYDNLSLHTQKGIDFLEKY-----------GHFIRDRCAIEMEYAGKLRRLVKNYQPKK 52
++ D + T+ G+D +Y + R + E+E+A ++ + +
Sbjct: 3 EELDLRLIRTKGGVDAALEYAKTWSRYAKELLAWTEKRASYELEFAKSTMKIAEAGKVSI 62
Query: 53 EEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDG 112
+++ + + L+ L + + + + ++ RK+ +
Sbjct: 63 QQQSHM-PLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRKEFKEQW 121
Query: 113 ARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKIL 172
+ + V AL RA+ Y + + + A
Sbjct: 122 MKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSK----------- 170
Query: 173 RNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTK 232
ER ++ E+A A +A Y+ + + ++E + + H
Sbjct: 171 -----QQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIV---SHVRKLV 222
Query: 233 TEYANQLQRA--NEMQRQH-YTQAMPEVFAQLQE 263
+ L+R + + + P FA L E
Sbjct: 223 FQGDEVLRRVTLSLFGLRGAQAERGPRAFAALAE 256
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 81.1 bits (201), Expect = 2e-19
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
K LY + + I + G+++ ++ D G GWT++ T E G VPT+YI+
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 79.2 bits (196), Expect = 2e-18
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
G A+Y FE +SEG+I M +GE+L ++E D+GDGWTRVRR+ EG+VPTSY++
Sbjct: 5 SSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKE-GGEGYVPTSYLRV 63
Query: 644 IA 645
+
Sbjct: 64 TS 65
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 70.1 bits (172), Expect = 3e-15
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRV 625
G+S +S + P T K +Y ++A+ + + + E L +IE + W +
Sbjct: 1 GSSGSSGTLRNYPL--------TCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKA 52
Query: 626 RRQTDSEEGFVPTSYIQTI 644
R + + G+VP Y+Q
Sbjct: 53 RNKV-GQVGYVPEKYLQFP 70
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 68.2 bits (167), Expect = 1e-14
Identities = 13/72 (18%), Positives = 23/72 (31%)
Query: 571 SLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTD 630
S S P G + G+ + I+E + W RV+ T
Sbjct: 2 SSGSSGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTS 61
Query: 631 SEEGFVPTSYIQ 642
+EG + ++
Sbjct: 62 GQEGLLAAGALR 73
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 62.3 bits (152), Expect = 1e-12
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 584 PPLGTAKALYPFEA-TSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A+ +Y F A + + +GE + + + G GW + E+G VPT Y++
Sbjct: 7 GMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNN-KGEQGLVPTDYVE 65
Query: 643 TI 644
+
Sbjct: 66 IL 67
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 57.2 bits (139), Expect = 7e-11
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
Y F A S+ + + G+++YI++ + W + + G VP +I+ +
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 55.3 bits (134), Expect = 4e-10
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
Y F A S+ + + G+++YI++ + W + + G VP +I+ +
Sbjct: 8 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 64
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 53.0 bits (128), Expect = 3e-09
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
P A Y F T+E +P G+ L I+ + + W + + + EG +P +Y+Q
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKV-GREGIIPANYVQ 66
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 53.1 bits (128), Expect = 3e-09
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 570 TSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQT 629
+ D P ALY ++ + + EE +++ + W RV+ +
Sbjct: 3 SGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIH-WWRVQDRN 61
Query: 630 DSEEGFVPTSYIQTIALDNV 649
EG+VP+SY+ + +N+
Sbjct: 62 G-HEGYVPSSYLVEKSPNNL 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 3e-09
Identities = 66/476 (13%), Positives = 150/476 (31%), Gaps = 126/476 (26%)
Query: 34 EMEYAGKLRRLVKNYQPK-KEEEDYQYSTCKAFKCVL--DEVTDLAGQHEVIAENLQVFI 90
E +Y + + ++ ++ + D + K +L +E+ + + ++ L++F
Sbjct: 13 EHQY--QYKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 91 I---KEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERARKNY----DKAYRESDKA 143
K+ + V+ F EE + + +M+ ++ + + Y D+ Y ++
Sbjct: 70 TLLSKQEEM-VQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 144 LE-HYKRADADLELSRA-EHLQDGD----HLM----KILRNQVDALERALKNYEKAFRDA 193
+ + R L+L +A L+ + K AL+ +Y+ +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----TWVALD-VCLSYKVQCKMD 181
Query: 194 DKA----LEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANE----- 244
K L++ + LE+ Q++ I + N R +
Sbjct: 182 FKIFWLNLKNCNSPETVLEM------LQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQAEL 234
Query: 245 ---MQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQC--L----D 295
++ + Y L L V+N + + F + C L
Sbjct: 235 RRLLKSKPYENC-------LLVLLN--VQNAKAW---------NAFNL--SCKILLTTRF 274
Query: 296 GIIKAADQINEKEDSALVIERYKSGFTPPG---------DIPFEDLSRGGESTPIAPAFP 346
+ D ++ + + ++ + TP D +DL R E P
Sbjct: 275 KQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPR-- 328
Query: 347 HLMGMRPEAATVRGTMSAGRLKRRNNVGGFGSNGKDDFSNLPPSQRKKKLQQRIEEIQHS 406
+ + R +G + N K I I+ S
Sbjct: 329 -RLSI------------IAESIR---------DGLATWDNWKHVNCDKL--TTI--IESS 362
Query: 407 I-QQESAAREGLIKMKGVYEDNPNLGDP-HMIE---GQLSETDSRLEKLRGELQKY 457
+ E A + V+ + ++ P ++ + ++D + +L KY
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDV--MVVVNKLHKY 414
Score = 54.9 bits (131), Expect = 7e-08
Identities = 50/338 (14%), Positives = 99/338 (29%), Gaps = 127/338 (37%)
Query: 8 NLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQP---------KKEE---- 54
+++L + L KY ++ L R V P ++
Sbjct: 295 SMTLTPDEVKSLLLKY---------LDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 55 EDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFK----------EE 104
+++++ C +++ + L AE ++F +++F +
Sbjct: 345 DNWKHVNCDKLTTIIE--SSLNVLEP--AEYRKMF--DRLSVFPPSAHIPTILLSLIWFD 398
Query: 105 RKKHLQDGARMMNLLENQVIALERARKN-----YD-----KAYRESDKAL-----EHYKR 149
K D ++N L + +E+ K K E++ AL +HY
Sbjct: 399 VIK--SDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 150 ADA----DLELSRAE-----HLQDGDHLMKILRNQVDALERA------------------ 182
DL + H+ G HL I + L R
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 183 -------------LKNYEKAFRDADKALEHYKRADADLE--LSRAEVEKQRINMAIKSQH 227
LK Y+ D D Y+R + L + E ++
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDND---PKYERLVNAILDFLPKIE------------EN 558
Query: 228 CEDTKTEYANQLQRANEMQRQH---YTQAMPEVFAQLQ 262
++Y + L+ A + + + +A Q+Q
Sbjct: 559 L--ICSKYTDLLRIA--LMAEDEAIFEEA----HKQVQ 588
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 58.0 bits (140), Expect = 5e-09
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 1/130 (0%)
Query: 513 NRDERANSAGEEEESLSRSASDSSVHNNNHSKLNSSSTQLPNISLYQREEPDIGTSHTSL 572
R A + + S + S + G + +
Sbjct: 12 QRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDT 71
Query: 573 PESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSE 632
S + T ALY +E+ +E + GE L I+ +GD W + +
Sbjct: 72 VTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGD-WWLAHSLSTGQ 130
Query: 633 EGFVPTSYIQ 642
G++P++Y+
Sbjct: 131 TGYIPSNYVA 140
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 51.9 bits (125), Expect = 6e-09
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 568 SHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRR 627
S T + + ALY +EA +E + + GE+ I+ +GD W R
Sbjct: 2 SMTGTLRTRGG-----TGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWW-EARS 55
Query: 628 QTDSEEGFVPTSYIQTI 644
T E G++P++Y+ +
Sbjct: 56 LTTGETGYIPSNYVAPV 72
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 51.5 bits (124), Expect = 6e-09
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 588 TAKALYPFEAT-SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
+A Y F + S +P+ G+ +YI ++ GW+ + S+EG+VPT+Y++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITR-EEPSGWSLGKLLDGSKEGWVPTAYMK 56
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 52.9 bits (127), Expect = 6e-09
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAK---ALYPFEATSEGSIPMYDGEELYIIELDQGDGW 622
G+S S S + G ALY +EA + + GE II +GD W
Sbjct: 4 GSSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWW 63
Query: 623 TRVRRQTDSEEGFVPTSYIQTIA 645
R + G++P++Y+
Sbjct: 64 -EARSIATGKSGYIPSNYVVPAD 85
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 51.5 bits (124), Expect = 7e-09
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 588 TAKALYPFEATSEGS-IPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+A Y F + S +P+ G+ ++I D+ GW+ + S+EG+VPT+Y+
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISR-DEPSGWSLAKLLDGSKEGWVPTAYMTPY 60
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 56.3 bits (135), Expect = 8e-09
Identities = 24/194 (12%), Positives = 65/194 (33%), Gaps = 9/194 (4%)
Query: 129 ARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEK 188
+N D + + +E ++ R L + L + ++ L+ LK+ +
Sbjct: 84 IAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGE---LRNVWDTVIEELKSDLKSSTE 140
Query: 189 AFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDT--KTEYANQLQRANEMQ 246
+ D+ + + + S E + ++ + E E ++ L+ A
Sbjct: 141 YYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYSKNNENSSHLEEA---- 196
Query: 247 RQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINE 306
R+ + Q P +F + +D R+ ++N M+ + + ++
Sbjct: 197 RRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAFEP 256
Query: 307 KEDSALVIERYKSG 320
+ + +
Sbjct: 257 QSEIDRFAKDASQY 270
Score = 51.3 bits (122), Expect = 4e-07
Identities = 21/189 (11%), Positives = 63/189 (33%), Gaps = 33/189 (17%)
Query: 26 FIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTC--------------------KAF 65
++ ++ YA +LR+++ + + + Q +
Sbjct: 65 LFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVW 124
Query: 66 KCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIA 125
V++E+ L ++V +K+ E ++ + + L +
Sbjct: 125 DTVIEELKSDLKSSTEYYNTLD----QQVVRELKESV-ENNTSWRESKDLHSKLSKNAAS 179
Query: 126 LERARKNYDKAYRESDKALEHYKRADA------DLELSRAEHLQDGDHLMKILRNQVDAL 179
+E KN + + + + +++ ++ +R + L+ + +++ + D L
Sbjct: 180 IEHYSKNNENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLK--NCMLRFQTSFSDYL 237
Query: 180 ERALKNYEK 188
K E
Sbjct: 238 LNTTKECET 246
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 51.1 bits (123), Expect = 8e-09
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
AK+ Y F A + + + + L I LD W +VR + + GFVP + + +
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEI--LDDRRQWWKVRNASG-DSGFVPNNILDIM 56
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 51.6 bits (124), Expect = 8e-09
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 575 SDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEG 634
D F P ALY ++ + + EE Y+++ + W RV+ + EG
Sbjct: 9 EDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIH-WWRVQDKN-GHEG 66
Query: 635 FVPTSYIQ 642
+ P+SY+
Sbjct: 67 YAPSSYLV 74
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 51.7 bits (124), Expect = 9e-09
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRV 625
G+S +S P +P L + + GE+L +I D+G W +
Sbjct: 1 GSSGSSGPLPNPEG----LDSDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWW-KA 54
Query: 626 RRQTDSEEGFVPTSYIQTI 644
+ E ++P + +
Sbjct: 55 ISLSTGRESYIPGICVARV 73
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 52.1 bits (125), Expect = 1e-08
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDG-WTR 624
G+S +S + L + LYPF + +E + GE + +IE + D W +
Sbjct: 1 GSSGSSGLSNGQGS----RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWK 56
Query: 625 VRRQTDSEEGFVPTSYIQTI 644
+ + G VP +Y+ +
Sbjct: 57 CKNA-RGQVGLVPKNYVVVL 75
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 51.7 bits (124), Expect = 1e-08
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 571 SLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTD 630
SL + + + A + + A + + + E L++ LD W RVR +
Sbjct: 16 SLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWL--LDDSKTWWRVRNAAN 73
Query: 631 SEEGFVPTSYIQ 642
G+VP++Y++
Sbjct: 74 -RTGYVPSNYVE 84
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 50.3 bits (121), Expect = 2e-08
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+ LY FEA + + + GE+L + LD W V+ + G++P++ ++ +
Sbjct: 9 KMQVLYEFEARNPRELTVVQGEKLEV--LDHSKRWWLVKNEAG-RSGYIPSNILEPL 62
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 50.0 bits (120), Expect = 3e-08
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
+ALY +EA +E + + GE+ I+ +GD W R T E G++P+ Y+
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWW-EARSLTTGETGYIPSIYLAP 61
Query: 644 I 644
+
Sbjct: 62 V 62
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 50.0 bits (120), Expect = 3e-08
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A + + A E + + E L++ LD W RVR + + GFVP++Y++
Sbjct: 9 VVVAKFDYVAQQEQELDIKKNERLWL--LDDSKSWWRVRNSMN-KTGFVPSNYVE 60
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 48.7 bits (117), Expect = 5e-08
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
G +A+Y +EA + I + G+ + +I D G GWT D +G PTSY +
Sbjct: 1 GAMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGE--CDGLKGLFPTSYCK 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 5e-08
Identities = 58/337 (17%), Positives = 94/337 (27%), Gaps = 146/337 (43%)
Query: 137 YRESDKALEHYKRADADLELSRAEHLQD--GDHLMKILRNQVDALE--------RALK-N 185
Y+ S A + + RAD H +D G ++ I+ N L + ++ N
Sbjct: 1636 YKTSKAAQDVWNRAD--------NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 186 Y---------------EKAFRDADKALEHYK-RADADLELSRAEVEKQRINMAIKSQHCE 229
Y EK F++ ++ Y R++ L LS
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL-LSA------------------ 1728
Query: 230 DTKTEYANQLQRANEMQRQHYTQAMPEVF----AQLQELDEKRVRNIRNFMV-HSANIEK 284
T+ +TQ P + A ++L K + HS
Sbjct: 1729 ---TQ---------------FTQ--PALTLMEKAAFEDLKSKGLIPADATFAGHS----- 1763
Query: 285 KVFPIINQCLDGIIKAADQINEKEDSALVIERYKSGFTPPGDIPFEDL-----SRGGEST 339
L G E +AL + + E L RG
Sbjct: 1764 ---------L-G-----------EYAALA---SLADV-----MSIESLVEVVFYRGMTMQ 1794
Query: 340 PIAPAFPHLMGMRPEAATVRGTMSAG-----------RLKRR--------N-NVGGF--- 376
P A G ++A R+ +R N NV
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 377 --GS-NGKDDFSNLPPSQRKKKLQQRIEEIQHSIQQE 410
G D +N+ + +K+ I E+Q S+ E
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKID--IIELQKSLSLE 1889
Score = 54.7 bits (131), Expect = 1e-07
Identities = 83/480 (17%), Positives = 147/480 (30%), Gaps = 162/480 (33%)
Query: 65 FKCVLDEVTD-LAGQH------EVIAENLQVFIIKEV------------TIFVKDFKEER 105
F +L E T+ A E++ + L ++ V + + +F E
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSLVEPSKVGQFDQVLNLCLTEF--EN 93
Query: 106 KKHLQDG---ARMMNLLENQVIALERAR---KNYDKAYRESDKALEHYKRADADLELSRA 159
+L+ A LL+ L + + KNY A + + + K++++ L
Sbjct: 94 C-YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD--KKSNSAL----F 146
Query: 160 EHLQDGD-HLMKILRNQ------VDALERALKNYEKAFRDADKALEHYKRADADL-ELSR 211
+ +G+ L+ I Q + L R L Y+ + L K + L EL R
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEEL-RDL--YQ-TYHVLVGDL--IKFSAETLSELIR 200
Query: 212 AEVEKQRI---NMAIKS--QHCEDT-KTEY---------ANQLQRANEMQRQHYTQAMPE 256
++ +++ + I ++ +T +Y + +Q HY
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV-----IQLAHY-----V 250
Query: 257 VFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAA--------DQINEKE 308
V A+L +R+ + A G++ A +
Sbjct: 251 VTAKLLGFTPGELRSY----LKGATG----------HSQGLVTAVAIAETDSWESFFVSV 296
Query: 309 DSALVI---------ERYKSGFTPPGDIPFEDLSRGGESTPIAPAFPHLM----GMRPEA 355
A+ + E Y + PP + ED E P +P M + E
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVP-SP-----MLSISNLTQEQ 348
Query: 356 -----ATVRGTMSAGR-----LK--RRNNV--G------GFGSN-------GKDDFSNLP 388
+ AG+ L +N V G G D S +P
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 389 PSQRKKKLQQRIEEIQ---HS---------IQQESAAREGLIKMKG----VY--EDNPNL 430
S+RK K R + HS I ++ K VY D +L
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Score = 35.4 bits (81), Expect = 0.067
Identities = 42/262 (16%), Positives = 72/262 (27%), Gaps = 74/262 (28%)
Query: 354 EAATVRG-TMSAGRLKRRNNV----GGFGSNGKDDF-SNLPPSQRKKKLQQR---IEE-- 402
+A + R T+S G L+ V S ++ F LP E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 403 ------IQHSIQQESAAR--EGLIKMKGVYEDNPNLG--DPHMIEGQL-SETDSRLEKLR 451
+ ++ + + L +E+ L D H + +L E D+ L K +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 452 GELQKYQTYMEESEANSPAGMRKNSGGGGNNNVNSTSGSSGGVNGVQTQQQRV-NVNGG- 509
++ Y A P +S V ++ + GG
Sbjct: 121 ELIKNY--ITARIMAKRP---------------FDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 510 SNNNR--DE-RA-------------NSAGEEEESLSRSASDSSVH-----------NNNH 542
N + +E R + E L R+ D+ N
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 543 SK-----LNSSSTQLPNISLYQ 559
+ L S P I + Q
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQ 245
Score = 28.9 bits (64), Expect = 6.5
Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 31/79 (39%)
Query: 564 DIGTSHT---SLPESDPPE----------YFDL-----PPLGTAK--ALYPFEATSEGSI 603
DI H L + + Y P AL F A EG+
Sbjct: 100 DI---HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNA 154
Query: 604 PMYD-----GE-ELYIIEL 616
+ G + Y EL
Sbjct: 155 QLVAIFGGQGNTDDYFEEL 173
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 54.7 bits (132), Expect = 6e-08
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
P A Y F T+E +P G+ L I+ + + W + + + EG +P +Y+Q
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG-REGIIPANYVQ 66
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 48.8 bits (117), Expect = 6e-08
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
L + ++ + + GE + +IE ++ GW V T E+G+VP +Y++
Sbjct: 6 SGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNE-SGWWFVS--TSEEQGWVPATYLEA 62
Query: 644 I 644
Sbjct: 63 Q 63
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 49.4 bits (118), Expect = 8e-08
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 565 IGTSHTSLPESDPPEYFDLPPLG-TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT 623
+G+ + S+ P + ALY +EA + G+++ ++E + G+ W
Sbjct: 3 LGSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLE-ESGEWW- 60
Query: 624 RVRRQTDSEEGFVPTSYIQTI 644
+ R +EG++P++Y+ +
Sbjct: 61 KARSLATRKEGYIPSNYVARV 81
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 48.0 bits (115), Expect = 1e-07
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A + + A + + + E L++ LD W RVR + G+VP++Y++
Sbjct: 6 IVIAKWDYTAQQDQELDIKKNERLWL--LDDSKTWWRVRNAAN-RTGYVPSNYVE 57
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 48.0 bits (115), Expect = 1e-07
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
K LY F A + + + E L + L+ G W ++R ++ + G+VP + +
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEV--LEDGRQWWKLRSRSG-QAGYVPCNILG 60
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 51.1 bits (122), Expect = 1e-07
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 582 DLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+ L T +A+ +E TS + + G+ + ++E GW Q ++ G++P S++
Sbjct: 7 EFIILQTYRAIADYEKTSGSEMALSTGDVVEVVE-KSESGWWFC--QMKAKRGWIPASFL 63
Query: 642 QTI 644
+ +
Sbjct: 64 EPL 66
Score = 42.7 bits (100), Expect = 1e-04
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A+ + A + + +GE + +I DGW +R D G+ P+ Y+Q
Sbjct: 79 YAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIH-KLLDGWWVIR--KDDVTGYFPSMYLQ 134
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 49.2 bits (117), Expect = 2e-07
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDS-EEGFVPTSYIQTI 644
A LY F+A + + + GE L I W + G VP SY++ I
Sbjct: 6 AVTLYEFKAERDDELDVSPGENLSICA-HYDYEWFIAKPINRLGGPGLVPVSYVRII 61
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 52.8 bits (127), Expect = 2e-07
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
ALY +E+ +E + GE L I+ +GD W + + G++P++Y+
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGD-WWLAHSLSTGQTGYIPSNYVA 57
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 47.8 bits (114), Expect = 3e-07
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 571 SLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIE-LDQGDGWTRVRRQT 629
S S P + + G A A Y F+ E + GE + +I ++ + W R
Sbjct: 2 SSGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVN--ENWYEGRITG 59
Query: 630 DSEEGFVPTSYIQTI 644
+G P SY+Q
Sbjct: 60 TGRQGIFPASYVQVS 74
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 46.8 bits (112), Expect = 3e-07
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
ALY F A+ + ++ + GE+L ++ + W + T + +G+VP++YI
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ--TKNGQGWVPSAYIT 59
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 47.3 bits (113), Expect = 3e-07
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
A ALY FE ++ + + +G+ ++I G GW ++ S+ G VP ++ I
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISY-KHGQGWLVAENESGSKTGLVPEEFVSYI 62
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 46.9 bits (112), Expect = 3e-07
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALYP++ + GE++ ++E + G+ W + + +EGF+P++Y+ +
Sbjct: 9 IVVALYPYDGIHPDDLSFKKGEKMKVLE-EHGEWW-KAKSLLTKKEGFIPSNYVAKL 63
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 47.4 bits (113), Expect = 3e-07
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIE---LDQGDGW 622
G+S +S E++ + + A+Y F+A + + + ++L I+E + W
Sbjct: 1 GSSGSSGSEAEGNQVY--------FAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEW 52
Query: 623 TRVRRQTDSEEGFVPTSYIQTI 644
+ ++G+VP++YI+
Sbjct: 53 WLAEV--NGKKGYVPSNYIRKT 72
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 47.0 bits (112), Expect = 3e-07
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRV--RRQTDSEEGFVPTSYI 641
L+ F++ ++ + G+ ++ ++ W + +G+VP +Y+
Sbjct: 8 HLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYL 67
Query: 642 Q 642
Sbjct: 68 A 68
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 46.9 bits (112), Expect = 4e-07
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQ 642
L + LYPF + +E + GE + +IE + D W + + + G VP +Y+
Sbjct: 4 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVV 62
Query: 643 TI 644
+
Sbjct: 63 VL 64
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 46.5 bits (111), Expect = 4e-07
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 573 PESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSE 632
P + Y F+A + + + + L + LD W +VR +
Sbjct: 2 PLGSGALKW-------VLCNYDFQARNSSELSVKQRDVLEV--LDDSRKWWKVRDPAG-Q 51
Query: 633 EGFVPTSYIQ 642
EG+VP + +
Sbjct: 52 EGYVPYNILT 61
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 46.0 bits (110), Expect = 5e-07
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
A ALY FE ++ + + +G+ ++I G GW ++ S+ G VP ++ I
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISY-KHGQGWLVAENESGSKTGLVPEEFVSYI 58
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 51.0 bits (121), Expect = 5e-07
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 562 EPDIGTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDG 621
L E+ + P + + F E +P GE L I+ D
Sbjct: 123 ALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDW 182
Query: 622 WTRVRRQTDSEEGFVPTSYIQ 642
W R G VP +Y+Q
Sbjct: 183 WE--ARNALGTTGLVPANYVQ 201
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 51.3 bits (123), Expect = 6e-07
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 547 SSSTQLPNISLYQREEPDIGTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMY 606
S + Q P S ++ + S ALY F A+ + ++ +
Sbjct: 6 SEALQRPVASDFEPQGLSEAARWNSKENLLAGP--SENDPNLFVALYDFVASGDNTLSIT 63
Query: 607 DGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
GE+L ++ + W + + + +G+VP++YI
Sbjct: 64 KGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYIT 97
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 46.6 bits (111), Expect = 6e-07
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 573 PESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDS 631
S + + A+ LY ++A + + + E + + + D W R +
Sbjct: 4 GSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG--N 61
Query: 632 EEGFVPTSYIQTI 644
++G VP +Y++ +
Sbjct: 62 QKGKVPITYLELL 74
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 46.1 bits (110), Expect = 6e-07
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
L ALY + + + + G+E +I+E + W R R + +EG++P++Y+
Sbjct: 6 SELKKVVALYDYMPMNANDLQLRKGDEYFILE-ESNLPWWRARDKNG-QEGYIPSNYVT 62
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 51.2 bits (123), Expect = 6e-07
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
ALY +EA + G+++ + L++ W + R +EG++P++Y+
Sbjct: 13 ALYDYEAIHHEDLSFQKGDQMVV--LEESGEWWKARSLATRKEGYIPSNYVA 62
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 46.6 bits (111), Expect = 6e-07
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
ALY + + S + G+++ + L++ W + R +EG++P++Y+
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVV--LEESGEWWKARSLATRKEGYIPSNYVA 57
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 46.6 bits (111), Expect = 7e-07
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
ALY + AT + + GE+ I+E GD W R T E G++P++Y+ +
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPGD-WWEARSLTTGETGYIPSNYVAPV 63
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 45.8 bits (109), Expect = 8e-07
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 590 KALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
AL+ +E + +G + GE+L I L+Q W + + T +EGF+P +++
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRI--LEQSGEWWKAQSLTTGQEGFIPFNFVA 60
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 45.4 bits (108), Expect = 1e-06
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGW-----TRVRRQTDSEEGFVPTSYIQT 643
ALY ++ S + M G+ L ++ D W V +T +GFVP +Y++
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63
Query: 644 I 644
+
Sbjct: 64 L 64
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 44.9 bits (107), Expect = 1e-06
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIE-LDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
P G A A + F ++ + GE + ++ +D + W R S +G P +Y+
Sbjct: 4 PFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVD--ENWYEGRIPGTSRQGIFPITYVD 61
Query: 643 TI 644
I
Sbjct: 62 VI 63
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 46.3 bits (110), Expect = 1e-06
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
A LY F+A + Y GE L+I + + G VP ++ I
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII 63
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 46.6 bits (110), Expect = 2e-06
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 26/124 (20%)
Query: 535 SSVHNNNHSKLNSSSTQLPNISLYQREEPDIGTSHTSLPESDPPEYFDLPP--LGTAKAL 592
SS H+++HS S +P + T + ++ S DLPP + +A
Sbjct: 3 SSHHHHHHS-----SGLVP-------RGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQ 50
Query: 593 YPFEATSEGSIPMYDGEELYIIELD----QGDGW--------TRVRRQTDSEEGFVPTSY 640
+ + AT + + G+ + +I Q +GW ++ + G P ++
Sbjct: 51 HDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENF 110
Query: 641 IQTI 644
+ +
Sbjct: 111 TERV 114
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 45.0 bits (107), Expect = 2e-06
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A+ F A G + GE L +IE + DGW + EG VP +Y++
Sbjct: 8 STGEEYIAVGDFTAQQVGDLTFKKGEILLVIE-KKPDGWWIAKDA-KGNEGLVPRTYLE 64
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 45.5 bits (108), Expect = 2e-06
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 565 IGTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT- 623
+ SH ALY ++ S + M G+ L ++ D W
Sbjct: 1 MRGSHHHHHHGSDE-----TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 55
Query: 624 RVRRQTDSEEGFVPTSYIQTIA 645
V + GFVP +Y++ +A
Sbjct: 56 EVNDRQ----GFVPAAYVKKLA 73
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 44.3 bits (105), Expect = 2e-06
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 589 AKALYPFEATSEGS-IPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
+A+ P+ + I G+ + + DGW V E+G + ++ +
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHN-ELEDGWMWVTNLRTDEQGLIVEDLVEEVG 64
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 44.7 bits (106), Expect = 3e-06
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 568 SHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRR 627
S S DLP + F A + + + + +++ + DGW R
Sbjct: 2 SSGSSGWQGLSSKGDLP---QVEITKAFFAKQADEVTLQQADVVLVLQQE--DGWLYGER 56
Query: 628 QTDSEEGFVPTSYIQTI 644
D E G+ P + + I
Sbjct: 57 LRDGETGWFPEDFARFI 73
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 45.8 bits (108), Expect = 3e-06
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 3/88 (3%)
Query: 556 SLYQREEPDIGTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIE 615
S Y P G S A+Y F+ + + + G+ + I E
Sbjct: 29 SNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQE 88
Query: 616 LDQGDGWTRVRRQ-TDSEEGFVPTSYIQ 642
W R +G P S+I
Sbjct: 89 TC--GDWYRGYLIKHKMLQGIFPKSFIH 114
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 44.2 bits (105), Expect = 3e-06
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A+Y F+AT + + G+E I+E W R R + EG++P++Y+
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILE-KNDLHWWRARDKY-GSEGYIPSNYVT 56
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 43.7 bits (104), Expect = 4e-06
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+ALY ++ + + G+EL + + GW R R + G P +Y++ I
Sbjct: 5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLD-SGQLGLYPANYVEAI 60
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 43.9 bits (104), Expect = 5e-06
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
A+AL + + +P + + I DQ + W Q + +EG P +++
Sbjct: 8 EFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWF--MGQLNGKEGSFPVDHVEI 65
Query: 644 IALD 647
+ D
Sbjct: 66 LLSD 69
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 43.4 bits (103), Expect = 5e-06
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+AL+ F E +P G+ L I + + W ++ + G +P Y++
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWN--AEDSEGKRGMIPVPYVEKY 59
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 43.3 bits (103), Expect = 5e-06
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
+AL+ F E +P G+ L I + + W ++ + G +P Y++
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWN--AEDSEGKRGMIPVPYVE 55
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 43.6 bits (103), Expect = 6e-06
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 582 DLPPLGTAKALYPFEA-TSEGSIPMYDGEELYIIE----LDQGDGWTRVRRQTDSEEGFV 636
D L A+ALY F E + + G+ + I+ L + W +VR + + G++
Sbjct: 10 DPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYI 68
Query: 637 PTSYIQTI 644
P +YI+ I
Sbjct: 69 PYNYIEII 76
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 43.2 bits (102), Expect = 9e-06
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGW------TRVRRQTDSEEGFVPTSYI 641
AL+ ++A + + G++L +++ W + +G++P++Y+
Sbjct: 9 YFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
Query: 642 QTI 644
Sbjct: 69 AED 71
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 42.8 bits (101), Expect = 1e-05
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
++ +E E + +G + ++E + W ++ +G+VP++Y++
Sbjct: 8 NLKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLE 66
Query: 643 TI 644
Sbjct: 67 KK 68
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 42.7 bits (101), Expect = 1e-05
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 589 AKALYPFEA-TSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
K ++P A ++ + G+ L ++ ++ DGW T G+ P+SY + +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 43.3 bits (102), Expect = 1e-05
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 568 SHTSLPESDPPEYFDLPPLGTAKALYPFEA-TSEGSIPMYDGEELYIIE----LDQGDGW 622
S DP L A+ALY F E + + G+ + I+ L + W
Sbjct: 2 SEFGSEPIDPS------KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDW 55
Query: 623 TRVRRQTDSEEGFVPTSYIQTI 644
+VR + + G++P +YI+ I
Sbjct: 56 WKVRTK-NGNIGYIPYNYIEII 76
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 42.3 bits (100), Expect = 1e-05
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 589 AKALYPFEA-TSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
K ++P A +++ + G+ + ++ ++ DGW G+ P+SY + +
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 47.5 bits (113), Expect = 1e-05
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 11/173 (6%)
Query: 103 EERKKHLQDGARMM----NLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSR 158
EER + LQ + M LE Q+ E AR+ +D ++ + +E
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 159 AEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQR 218
+ ++ K+L +V L L E+ ++ K ++ ++LE+ + EK R
Sbjct: 1000 NKLTKE----RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 219 INMAIKSQHCEDTKTEYANQ---LQRANEMQRQHYTQAMPEVFAQLQELDEKR 268
+ + E ++ Q LQ + + E+ A L L+++
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
Score = 42.1 bits (99), Expect = 6e-04
Identities = 46/347 (13%), Positives = 111/347 (31%), Gaps = 36/347 (10%)
Query: 113 ARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKIL 172
L+ ++A K + L K + + E + + + L
Sbjct: 860 QAKDEELQRTKERQQKAEAEL-KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918
Query: 173 RNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTK 232
+ LE L E + ++ + + ++ ++E+Q Q + K
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Query: 233 TEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQ 292
++++ + ++ + + L+E+ + + + A E+K
Sbjct: 979 VTADGKIKKMED-DILIMEDQNNKLTKERKLLEER----VSDLTTNLAEEEEKA----KN 1029
Query: 293 CLDGIIKAADQINEKEDSALVIERYKSGFTPPGDIPFEDLSRGGESTPIAPAFPHLMGMR 352
K I+E E E+ + E + R E + + ++
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQE--------LEKIKRKLEGE-SSDLHEQIAELQ 1080
Query: 353 PEAATVRGTMSAGRLKRRNNVGGFGSNGKDDFSNLPPSQRKKK-LQQRIEEIQHSIQQES 411
+ A ++ ++ K+ + + +D+ S + +K + L+ I ++Q ++ E
Sbjct: 1081 AQIAELKAQLA----KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136
Query: 412 AAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEKLRGELQKYQ 458
AAR K K + +L + LE Q
Sbjct: 1137 AARNKAEKQKRDLSE------------ELEALKTELEDTLDTTATQQ 1171
Score = 32.5 bits (74), Expect = 0.56
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 391 QRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPN--LGDPHMIEGQLSETDSRLE 448
KKK+QQ++ +++ +++E AAR+ L K + D ++E Q ++ +
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Query: 449 KLRGELQKYQTYMEESEA 466
L + T + E E
Sbjct: 1008 LLEERVSDLTTNLAEEEE 1025
Score = 31.3 bits (71), Expect = 1.3
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPN--LGDPHMIEGQLSETDSRL 447
++ +K L++R+ ++ ++ +E + L K+K +E + E E +
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062
Query: 448 EKLRGELQKYQTYMEESEA 466
KL GE + E +A
Sbjct: 1063 RKLEGESSDLHEQIAELQA 1081
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 45.4 bits (107), Expect = 2e-05
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
A A Y F+AT++ + G+ L ++ + W + + + ++GF+P +YI+
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNW--YKAELNGKDGFIPKNYIE 54
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 41.9 bits (99), Expect = 2e-05
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
+ P+ + S+ I G + +I + +GW +R +EG+ P SY++
Sbjct: 6 SGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNL-EGWWYIRY--LGKEGWAPASYLK 61
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 582 DLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSY 640
D LY ++ S + + G+ L ++ D W V + GFVP +Y
Sbjct: 2 DETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQ----GFVPAAY 57
Query: 641 IQTI 644
++ +
Sbjct: 58 LKKL 61
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 41.6 bits (98), Expect = 3e-05
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 589 AKALYPFEA-TSEGSIPMYDGEELYIIE----LDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
A+ALY F E + + G+ + I+ L + W +VR + + G++P +YI+
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEI 68
Query: 644 I 644
I
Sbjct: 69 I 69
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 41.4 bits (98), Expect = 3e-05
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
L T +A+Y + A E + DG+ + ++ DGW Q G +P +YI+
Sbjct: 4 ANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQ-PIDDGWMYGTVQRTGRTGMLPANYIEF 62
Query: 644 I 644
+
Sbjct: 63 V 63
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 41.5 bits (98), Expect = 3e-05
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 588 TAKALYPFEA-TSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
KA++ A + + +G+ + ++ + DGW + G+ P SY + +
Sbjct: 9 RVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 41.9 bits (98), Expect = 3e-05
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDS--EEGFVPTSYI 641
L F A + + G+ + ++E GW VR S +EG VP+S +
Sbjct: 22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL 75
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 41.7 bits (98), Expect = 3e-05
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 582 DLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYI 641
+ ++ + I G E+ ++E + GW VR EG+ P+ Y+
Sbjct: 4 GSSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQE-SGWWYVR--FGELEGWAPSHYL 60
Query: 642 Q 642
Sbjct: 61 V 61
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
A A Y ++A + + + +++ IE D W + D +G P++Y+
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIE-FVDDDWWLGELEKDGSKGLFPSNYVSLG 57
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 42.0 bits (99), Expect = 4e-05
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 572 LPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTD 630
L S P+ A+Y + A +E + G+ + ++ D D W + T
Sbjct: 20 LGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVT- 78
Query: 631 SEEGFVPTSYIQTI 644
G P++Y++
Sbjct: 79 ---GLFPSNYVKMT 89
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 41.6 bits (98), Expect = 4e-05
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-R 624
G+S +S P L A+Y + E + +G +Y+I+ + +
Sbjct: 1 GSSGSSGDPPWAPR----SYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV 56
Query: 625 VRRQTDSEEGFVPTSYIQTI 644
+ T G P +Y+++I
Sbjct: 57 MNGVT----GLFPGNYVESI 72
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 41.1 bits (97), Expect = 4e-05
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
A A Y F+AT++ + G+ L ++ + W + + ++GF+P +YI+
Sbjct: 7 VGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE--LNGKDGFIPKNYIEM 64
Query: 644 IALD 647
Sbjct: 65 KPHP 68
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 41.8 bits (98), Expect = 4e-05
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEAT------SEGSIPMYDGEELYIIELDQG 619
G+S +S + A Y + E +P+ G+ LY+
Sbjct: 1 GSSGSSGTSKQRYS----GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDE 56
Query: 620 DGWTRVRRQTDSEEGFVPTSYIQTI 644
DG+ D + G VP++++ +
Sbjct: 57 DGFYE-GELLDGQRGLVPSNFVDFV 80
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 41.1 bits (97), Expect = 5e-05
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 587 GTAKALYPFEATSEGSIPMYDGEELYIIE-LDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
G A A + F ++ + GE + ++ +D + W R S +G P +Y+ I
Sbjct: 8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVD--ENWYEGRIPGTSRQGIFPITYVDVI 64
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 41.3 bits (97), Expect = 5e-05
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-R 624
G+S +S E +ALY FEA + + GE + +++ + W
Sbjct: 1 GSSGSSGSEIQLNN----KVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE 56
Query: 625 VRRQTDSEEGFVPTSYIQTI 644
R G P++++ T
Sbjct: 57 NHRGI----GLFPSNFVTTN 72
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 41.1 bits (97), Expect = 5e-05
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 571 SLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQT 629
+ D A+AL+ F S+ + G+ ++++ D VR T
Sbjct: 3 HKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGAT 62
Query: 630 DSEEGFVPTSYIQTI 644
G P S+++ +
Sbjct: 63 ----GIFPLSFVKIL 73
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 40.4 bits (95), Expect = 6e-05
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 582 DLPPLGTAKALYPFEATSE--GSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTS 639
D + AKALYP++A + I E L + +++ W + RR + E G +P++
Sbjct: 1 DDNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDIE--GRWWKARRA-NGETGIIPSN 57
Query: 640 YIQTI 644
Y+Q I
Sbjct: 58 YVQLI 62
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 41.3 bits (97), Expect = 6e-05
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 568 SHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQG---DGWTR 624
S S D T + +YP+ ++ + + G+ +++ ++Q +GW
Sbjct: 2 SSGSSGSRDIR----FANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIY 57
Query: 625 VRRQTDSEEGFVPTSYIQTIA 645
T G +P +YI
Sbjct: 58 GTSLTTGCSGLLPENYITKAD 78
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 40.8 bits (96), Expect = 6e-05
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W V + GFVP +Y++ +
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQ----GFVPAAYVKKL 60
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 41.3 bits (97), Expect = 6e-05
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 570 TSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELD---QGDGWTRVR 626
+S + + A+A Y F A S+ I G+ L + + + GW
Sbjct: 2 SSGSSGTNWASGEDDHV-VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60
Query: 627 RQTDSEEGFVPTSYIQTIA 645
G +P +Y++ +
Sbjct: 61 LD-GQTTGLIPANYVKILG 78
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 40.3 bits (95), Expect = 7e-05
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
+ALY + A + + + G+ L +I + DGW V R + + GFVP SY++
Sbjct: 6 SGAQEYRALYDYTAQNPDELDLSAGDILEVIL-EGEDGWWTVER--NGQRGFVPGSYLEK 62
Query: 644 I 644
+
Sbjct: 63 L 63
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 40.5 bits (95), Expect = 8e-05
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
ALY ++ S + M G+ L ++ D W V + GFVP +Y++ +
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQ----GFVPAAYVKKL 57
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 42.8 bits (100), Expect = 9e-05
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 571 SLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQ-T 629
S S + A+Y F+ + + + G+ + I E W R
Sbjct: 2 SSGSSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQE--TCGDWYRGYLIKH 59
Query: 630 DSEEGFVPTSYIQTI 644
+G P S+I
Sbjct: 60 KMLQGIFPKSFIHIK 74
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 40.6 bits (95), Expect = 1e-04
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEEL--------YIIELD 617
G+S +S + E P AL+ ++ + P EEL +
Sbjct: 1 GSSGSSGTDPGAEE----LPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDK 56
Query: 618 QGDGWTRVRRQTDSEEGFVPTSYIQTIALDN 648
DG+ R +T + G +P + + I D+
Sbjct: 57 DADGF--YRGETCARLGLIPCNMVSEIQADD 85
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 39.6 bits (93), Expect = 1e-04
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIALD 647
T +A++ F E + + + L + + D W G P Y + +
Sbjct: 8 THRAIFRFVPRHEDELELEVDDPLLVELQAE-DYWYEAYNMRTGARGVFPAYYAIEVTKE 66
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 39.1 bits (92), Expect = 2e-04
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQ 642
+ L+P+ T+E + +GE +++I + G+ GW + + +EG P ++
Sbjct: 4 GAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE--LNGKEGVFPDNFAV 61
Query: 643 TIA 645
I+
Sbjct: 62 QIS 64
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 39.3 bits (92), Expect = 2e-04
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
+ A A + + + + G+ L + E D W G +P YI
Sbjct: 8 EGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMR----GLIPHKYIT 63
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 41.7 bits (97), Expect = 2e-04
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 569 HTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQ 628
L E+ + P + + F E +P GE L I+ D W R
Sbjct: 101 MRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWE--ARN 158
Query: 629 TDSEEGFVPTSYIQ 642
G VP +Y+Q
Sbjct: 159 ALGTTGLVPANYVQ 172
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 39.3 bits (92), Expect = 2e-04
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGW---TRVRRQTDSEEGFVPTSY 640
A+ + A+ + + G+ + I++ + GW R ++G+ P S+
Sbjct: 5 SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNT-SGWWQGELQARGKKRQKGWFPASH 63
Query: 641 IQTI 644
++ +
Sbjct: 64 VKLL 67
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
A A + + S + G L + D W R G VP YI
Sbjct: 8 FAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGID----GLVPHQYIV 59
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
T +A++ F E + + + L + + D W G P Y +
Sbjct: 5 THRAIFRFVPRHEDELELEVDDPLLVELQAE-DYWYEAYNMRTGARGVFPAYYAIEVT 61
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 39.2 bits (92), Expect = 2e-04
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTR--VRRQTDSEEGFVPTSYI 641
P AKALY +A + + G + Q GW + +T G +P +Y+
Sbjct: 8 TPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKT----GLIPENYV 63
Query: 642 QTI 644
+ +
Sbjct: 64 EFL 66
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 38.8 bits (91), Expect = 2e-04
Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+A+Y + +E + + +G+ + +++ DGW + + G P +Y+ +
Sbjct: 9 PYRAMYQYRPQNEDELELREGDRVDVMQQCD-DGWFVGVSRRTQKFGTFPGNYVAPV 64
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 39.2 bits (92), Expect = 2e-04
Identities = 9/61 (14%), Positives = 24/61 (39%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
+ K +Y +A ++ + +GE + + + + W +G P S++
Sbjct: 8 NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
Query: 644 I 644
+
Sbjct: 68 L 68
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 38.8 bits (91), Expect = 2e-04
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDG--WT-RVRRQTDSEEGFVPTSY 640
GTA A Y F A + + +G+ + I GD W + G+ P++Y
Sbjct: 5 SSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRI----GWFPSTY 60
Query: 641 IQTIALDN 648
++ + +
Sbjct: 61 VEEEGIQS 68
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 38.7 bits (91), Expect = 3e-04
Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+ L+ F ++ + + G +++++ D W V ++G VP +Y++ +
Sbjct: 9 AHRVLFGFVPETKEELQVMPGNIVFVLK-KGNDNWATVMFN--GQKGLVPCNYLEPV 62
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 38.8 bits (91), Expect = 3e-04
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
ALYP+ + G + +GEE+ + + D G+ WT + ++ G P++Y++
Sbjct: 6 SGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGSIGDRS----GIFPSNYVK 60
Query: 643 TI 644
Sbjct: 61 PK 62
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 38.8 bits (91), Expect = 3e-04
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGD--GWTRVRRQTDSEEGFVPTSYIQTIA 645
A+ALY + G+ L I+E + GW + +G P + +Q ++
Sbjct: 9 LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL--LHGRQGLAPANRLQILS 66
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 38.4 bits (90), Expect = 3e-04
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
A+ + AT E + GE++ I+ D W G++P +++
Sbjct: 9 EFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCC----GYIPANHVGKH 62
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 38.5 bits (90), Expect = 3e-04
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
A L P+ A + M G+ L ++ D W +V + +GFVP +Y++ +
Sbjct: 3 APPLPPYSAGGRE-VTMKKGDILTLLNSTNKD-WWKVE--VNDRQGFVPAAYVKKL 54
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 39.4 bits (92), Expect = 3e-04
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQ 642
+ALYPFEA + + G+ + + E G+ GW G+ P +Y++
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS--FQGNFGWFPCNYVE 60
Query: 643 TI 644
+
Sbjct: 61 KM 62
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 38.9 bits (91), Expect = 3e-04
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIE-LDQGDGW-- 622
G+S +S E L ALY FE G + G+ + +I D W
Sbjct: 1 GSSGSSGHERVGN----LNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWE 56
Query: 623 TRVRRQTDSEEGFVPTSYIQTIA 645
++R QT G P +Y+ +
Sbjct: 57 GKLRGQT----GIFPANYVTMNS 75
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 38.9 bits (91), Expect = 3e-04
Identities = 8/62 (12%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
+ +A+A++ + + G+ + +++ D W ++ + G+ P S+++
Sbjct: 8 DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEE----GWFPASFVR 63
Query: 643 TI 644
Sbjct: 64 LW 65
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 38.4 bits (90), Expect = 3e-04
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 588 TAKALYPFEATSEG-SIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+A+ P+ + I G+ + + DGW V E+G + ++ +
Sbjct: 9 RVRAILPYTKVPDTDEISFLKGDMFIVHN-ELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 38.4 bits (90), Expect = 3e-04
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 573 PESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDS 631
PE PP + KALY FE ++G + +G+ + + + + + Q+
Sbjct: 5 PEFMPP-----LDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQS-- 57
Query: 632 EEGFVPTSYIQTI 644
GF P SY+Q +
Sbjct: 58 --GFFPLSYVQVL 68
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 38.5 bits (90), Expect = 4e-04
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 566 GTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRV 625
G+S +S + TA ALY ++A + I + + IE DGW R
Sbjct: 1 GSSGSSGTYDEYEN----DLGITAVALYDYQAAGDDEISFDPDDIITNIE-MIDDGWWRG 55
Query: 626 RRQTDSEEGFVPTSYIQTI 644
G P +Y++
Sbjct: 56 V--CKGRYGLFPANYVELR 72
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 37.9 bits (89), Expect = 4e-04
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIE-LDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
A ALY F G +P G+ + I++ D + W R + EG P +Y++ +
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR--VNGREGIFPANYVELV 60
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 37.9 bits (89), Expect = 4e-04
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIALD 647
Y ++A + + + GE + ++ Q +GW + G P ++++ I +
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGE--LNGRRGMFPDNFVKEIKRE 60
Query: 648 N 648
Sbjct: 61 T 61
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 38.0 bits (89), Expect = 4e-04
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQTI 644
K ++P+EA ++ + + +G+ + +I D D GW + G P ++++ +
Sbjct: 9 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE--LNGRRGVFPDNFVKLL 64
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 41.9 bits (97), Expect = 5e-04
Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 5/137 (3%)
Query: 508 GGSNNNRDERANSAGEEEESLSRSASDSSVHNNNHSKLNSSSTQLPNISLYQREEPDIGT 567
G + R + +SL V + ++ + + + Q
Sbjct: 98 GVKQEIAEMRIPALNAYMKSLLSL--PVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPR 155
Query: 568 SHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRR 627
+ S D A+AL+ F S+ + G+ ++++ D
Sbjct: 156 TRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWL---EG 212
Query: 628 QTDSEEGFVPTSYIQTI 644
G P S+++ +
Sbjct: 213 TVRGATGIFPLSFVKIL 229
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 38.0 bits (89), Expect = 5e-04
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTIA 645
AL+ + A + + GE + ++ DGW + G P+ Y+ ++
Sbjct: 9 MFVALHTYSAHRPEELDLQKGEGIRVLG-KYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 38.4 bits (89), Expect = 6e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 578 PEYFDLPPLGT-AKALYPFEATSEGSIPMYDGEELYIIEL--------------DQGDGW 622
P P G +ALYPF + + G+ L + Q GW
Sbjct: 2 PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61
Query: 623 TRVRRQTDSEEGFVPTSYIQTIA 645
+ + G P +Y++ +
Sbjct: 62 MPGLNERTRQRGDFPGTYVEFLG 84
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 40.1 bits (93), Expect = 7e-04
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 575 SDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEG 634
S+PP AL+ +E + +G + GE+L I L+Q W + + T +EG
Sbjct: 3 SNPPA--SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRI--LEQSGEWWKAQSLTTGQEG 58
Query: 635 FVPTSYIQ 642
F+P +++
Sbjct: 59 FIPFNFVA 66
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 37.7 bits (88), Expect = 7e-04
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
A A + + + + G L + + D W R G +P YI
Sbjct: 7 GEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGID----GLIPHQYIV 62
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 37.8 bits (88), Expect = 7e-04
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQ 642
G AL + + + + G+ + ++ + + GW G P +Q
Sbjct: 6 SGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS--AGGRSGLFPADIVQ 63
Query: 643 TIA 645
A
Sbjct: 64 PAA 66
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 37.2 bits (87), Expect = 8e-04
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTIA 645
T ALY F + M G+ + ++E D W +++ + GF P +++Q ++
Sbjct: 9 TYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRI----GFFPANFVQRLS 63
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 37.2 bits (87), Expect = 8e-04
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
KALY ++A + + + II+ D WT R+R + G P +Y+
Sbjct: 3 LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQ----GLFPNNYVT 58
Query: 643 TI 644
I
Sbjct: 59 KI 60
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 36.8 bits (86), Expect = 0.001
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
KALY ++A + + +G+ + + + D W + + G+VP +Y+Q I
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKR----GWVPANYVQDI 58
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIE-LDQGDGW--TRVRRQTDSEEGFVPTSYIQTI 644
A+AL + A + + + II L+Q + W V G+ P SY++ I
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHD---IITVLEQQENWWFGEVHGGR----GWFPKSYVKII 64
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 36.8 bits (86), Expect = 0.001
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
+ALY FEA + + GE + +++ + W R T G P++++ T
Sbjct: 7 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGT----GLFPSNFVTTD 60
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
+AL+ F+ +G + G+ +++++ + W QT G P +Y+ +
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQT----GMFPRNYVTAV 57
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 587 GTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
A+AL+ F S+ + G+ ++++ D VR T G P S+++ +
Sbjct: 5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGAT----GIFPLSFVKIL 59
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
+ LY FE ++G + +G+ + + + + + ++ GF P +Y++ I
Sbjct: 5 CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGES----GFFPINYVEVI 58
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 36.9 bits (86), Expect = 0.001
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD--GWTRVRRQTDSEEGFVPTSYI 641
+ KALY +E ++ + +G + I+ + D G+ + G P+ +
Sbjct: 6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE--FNGRIGVFPSVLV 63
Query: 642 QTI 644
+ +
Sbjct: 64 EEL 66
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 567 TSHTSLPESDPPEYFDLPPLG-TAKALYPFEATSEGSIPMYDGEELYIIELDQG----DG 621
+ E+ + P G A++ +EA + + + G+ + ++ D +G
Sbjct: 9 SGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEG 68
Query: 622 WTRVRRQTDSEEGFVPTSYIQ 642
W + G P++Y+
Sbjct: 69 WWTGQLP-SGRVGVFPSNYVA 88
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 36.1 bits (84), Expect = 0.002
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTRVRRQTDSEEGFVPTSYIQTI 644
K ++P+EA ++ + + +G+ + +I D D GW + G P ++++ +
Sbjct: 4 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE--LNGRRGVFPDNFVKLL 59
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 36.1 bits (84), Expect = 0.002
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELD--QGDGWTRVRRQTDSEEGFVPTSYIQTI 644
AKALY A S + G+ + ++E D DGW +G VP + ++ +
Sbjct: 5 LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS--LHGRQGIVPGNRLKIL 61
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
+ALY FE + + +G+ +YI ++ + W + +T G +P++Y+
Sbjct: 9 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRT----GLIPSNYVAEQ 62
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
T ALY + A + ++ G+ + + D D W +EG+ P +++ +
Sbjct: 8 TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWY--GSIGKGQEGYFPANHVASE 62
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
+ALY FE + + +G+ +YI ++ + W + +T G +P++Y+
Sbjct: 5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRT----GLIPSNYVA 56
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 36.1 bits (84), Expect = 0.002
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
+ALY FE +EG + +G+ + + + + + + GF P +Y++ +
Sbjct: 9 CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHS----GFFPINYVEIL 62
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
AKAL FE + + + + II W + G+ P +++ +
Sbjct: 9 RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLR----GWFPAKFVEVL 62
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 35.7 bits (83), Expect = 0.002
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
P +A + F+ T+E + G+ +++ +++G W +T G+ P++Y++
Sbjct: 2 PLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRT----GWFPSNYVR 57
Query: 643 TI 644
I
Sbjct: 58 EI 59
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 35.6 bits (83), Expect = 0.003
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
A+ALY FEA E + GE + +++ WT R+ + G P +Y+ +
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKL----GLFPANYVAPM 56
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 36.0 bits (84), Expect = 0.003
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
AKAL + + G + G+ + + + + + + G P S ++ I
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVS----GIFPASSVEVI 62
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 37.4 bits (86), Expect = 0.003
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
GTAKA Y F A + + +G+ + I+ GW R G+ P++Y++
Sbjct: 3 GTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE--IYGRIGWFPSNYVEE 60
Query: 644 I 644
Sbjct: 61 D 61
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 35.2 bits (81), Expect = 0.003
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
A + + A E + + G + ++E W R + + G+ P++Y+
Sbjct: 3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWW---RGSYNGQIGWFPSNYVLEE 56
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 35.5 bits (82), Expect = 0.003
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 572 LPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT 623
+P + + ALY ++ S + M G+ L ++ D W
Sbjct: 7 VPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK 58
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 35.8 bits (83), Expect = 0.003
Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGD-GWTR--VRRQTDSEEGFVPTSY 640
K ++P+EA ++ + + +G+ + +I D D GW + + G P ++
Sbjct: 7 KSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR----GVFPDNF 62
Query: 641 IQTI 644
++ +
Sbjct: 63 VKLL 66
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 35.3 bits (82), Expect = 0.004
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
T KALY ++A + G ++ + + GW + + + P++Y++ I
Sbjct: 9 TVKALYDYKAKRSDELTFCRGALIHNVS-KEPGGWWKGDYG-TRIQQYFPSNYVEDI 63
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 35.4 bits (82), Expect = 0.004
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGW---TRVRRQTDSEEGFVPTSY 640
A +P+++ E + +E+ + + W D EG P S+
Sbjct: 5 EVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTS-VEDAEWYFGEYQDSNGDVIEGIFPKSF 63
Query: 641 IQ 642
+
Sbjct: 64 VA 65
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 35.4 bits (82), Expect = 0.004
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 573 PESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDS 631
+A+Y FEA + + GE + +++ + W +
Sbjct: 4 HHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGI-- 61
Query: 632 EEGFVPTSYIQ 642
G P++++
Sbjct: 62 --GLFPSNFVT 70
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 130 RKNYDKAYRESDKALE--------HYKRADADLELSR-AEHLQDGDHLMKILRNQVDALE 180
+ Y +A D+ + + +A A ++L + +Q ++
Sbjct: 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76
Query: 181 R------------ALKNYEKAFRDADKALEHYKRA 203
R A+ + + + D+ E Y R+
Sbjct: 77 RSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111
Score = 27.3 bits (61), Expect = 5.8
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 127 ERARKNYDKAYRESDKALEHYKRA 150
+ A + E D+ E Y R+
Sbjct: 88 QGAVGSVQIPVVEVDELPEGYDRS 111
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 34.9 bits (81), Expect = 0.005
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 586 LGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
+ A+ + F+A S + + G+ +YI + + + G P +Y++ +
Sbjct: 1 MKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRL----GIFPANYVEVL 56
Query: 645 ALD 647
L+
Sbjct: 57 PLE 59
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 34.9 bits (81), Expect = 0.005
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
A+A + F+A + +P+ G+ +YI + + + + G P +YI+ +
Sbjct: 9 PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRV----GIFPRTYIELL 62
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 34.9 bits (81), Expect = 0.005
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
TA ALY ++A + I + + IE+ W + + G P +Y++
Sbjct: 11 TAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRY----GLFPANYVE 62
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 34.4 bits (80), Expect = 0.007
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
+ALY F+ +G + + G+++ ++E + + +T G P +Y++
Sbjct: 4 YVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRT----GIFPANYVK 55
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 38.4 bits (88), Expect = 0.007
Identities = 39/289 (13%), Positives = 83/289 (28%), Gaps = 43/289 (14%)
Query: 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYST 61
F++ +S + + + + + A + L+ K P +++ ST
Sbjct: 26 FEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSST 85
Query: 62 CKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLEN 121
+ F V+DE++ H V++ L ++ +T F + +E
Sbjct: 86 LQQFSKVIDELSSC---HAVLSTQLADAMMFPITQFKERDLKEILTL------------- 129
Query: 122 QVIALERARKNYDKAYRESDKALEHYKR-------------ADADLELSRAEHLQDGDHL 168
++ + A + D A+ Y R D+ SR + Q H
Sbjct: 130 --------KEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHY 181
Query: 169 MKIL-----RNQVDALERALKNYEKAFRDADKALEHYKRA-DADLELSRAEVEKQRINMA 222
L + ++ LE L + E+ + L V+ R M
Sbjct: 182 FCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMD 241
Query: 223 IKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRN 271
+ + T + + + R +
Sbjct: 242 SDIETMQQTIEDLEVASDPLYVPDPDPTKFPVNRNLTRKAGYLNARNKT 290
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 34.5 bits (80), Expect = 0.008
Identities = 10/61 (16%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTIALD 647
K L+ + +E + + G+ + I E + W+ + + G P+++++ + L+
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKL----GLFPSNFVKELELE 59
Query: 648 N 648
+
Sbjct: 60 H 60
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 34.5 bits (80), Expect = 0.008
Identities = 9/57 (15%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
K L+ + +E + + G+ + I E + W+ + + G P+++++ +
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKL----GLFPSNFVKEL 62
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 35.1 bits (81), Expect = 0.008
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 571 SLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTD 630
S S P A + + A E + + G ++ ++E W R +
Sbjct: 2 SSGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWW---RGSYN 58
Query: 631 SEEGFVPTSYIQTI 644
+ G+ P++Y+
Sbjct: 59 GQVGWFPSNYVTEE 72
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 35.0 bits (80), Expect = 0.009
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIE---LDQGDGWTRVRRQTDSEEGFVPTSY 640
PP +A F A + + + +G+ + +I+ + +GFV +S+
Sbjct: 15 PPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID--NGVTKGFVYSSF 72
Query: 641 IQTI 644
++
Sbjct: 73 LKPY 76
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 34.7 bits (80), Expect = 0.009
Identities = 7/71 (9%), Positives = 15/71 (21%), Gaps = 9/71 (12%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGE-------ELYIIELDQGDGWTRVRRQTDSEEGFV 636
A ++ G + + G+ G V
Sbjct: 5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE--LGGHRGLV 62
Query: 637 PTSYIQTIALD 647
P + ++L
Sbjct: 63 PAHLLDHMSLH 73
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 33.7 bits (78), Expect = 0.011
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
A + ++A + + + GE + I + G W ++ + G P ++++ I
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRR----GLFPDNFVREI 56
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Desulfovibrio vulgaris}
Length = 434
Score = 37.0 bits (85), Expect = 0.016
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 571 SLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTD 630
+P P F P A YPF+ ++ M G +++ W V +T
Sbjct: 128 EVPTLRP--MFTAPTR--AGQGYPFDMFQRTAVWM--GTPVFVGHATADRAWLYV--ETA 179
Query: 631 SEEGFVPTSYIQTI 644
G++P + + +
Sbjct: 180 FAAGWMPAADVARV 193
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 37.0 bits (86), Expect = 0.019
Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 17/189 (8%)
Query: 42 RRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIF---- 97
R L K K +E+ T A L + + + IF
Sbjct: 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175
Query: 98 -VKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLEL 156
++ E + + + NL + + ++A +++ KA R ++ L+ + E
Sbjct: 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235
Query: 157 SRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEK 216
G + A D KA+E + R ++ + ++ ++
Sbjct: 236 LAISLEHTGIFKFL------------KNDPLGAHEDIKKAIELFPRVNSYIYMALIMADR 283
Query: 217 QRINMAIKS 225
Sbjct: 284 NDSTEYYNY 292
Score = 32.4 bits (74), Expect = 0.44
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 126 LERARKNYDKAYRESDKALEHYKRADADLELSRAEH-LQDGDHLMKILRNQVDALER--- 181
A ++ KA + + A + + + D +K+ N
Sbjct: 253 PLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312
Query: 182 ---ALKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIK 224
L+NY++A +D DKA E + + A ++ + + + A +
Sbjct: 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366
Score = 29.7 bits (67), Expect = 3.2
Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 24/144 (16%)
Query: 126 LERARKNYDKAYR-ESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALK 184
++A K YD A E+ + A + + + ++
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPL------------------VGKATLLTRNPTVE 429
Query: 185 NYEKAFRDADKALEHY-KRADADLELSRAEVEKQRINMAI----KSQHCEDTKTEYANQL 239
N+ +A +KA + + A + L++ +++++ I+ AI +S T E +
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489
Query: 240 QRANEMQRQHYTQAMPEVFAQLQE 263
A + Q ++ P + ++QE
Sbjct: 490 TFAEAAKVQQRIRSDPVLAKKIQE 513
Score = 29.3 bits (66), Expect = 4.9
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 18/118 (15%)
Query: 126 LERARKNYDKA-YRESDKALEHYKRADADLELSRAEH-LQDGDHLMKILRNQVDAL-ERA 182
++A K++DKA + + + + A ++ + + + A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379
Query: 183 -----LKNYEKAFRDADKALE--------HYKRADA--DLELSRAEVEKQRINMAIKS 225
+++KA + D A+E + A L + A
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 33.4 bits (77), Expect = 0.020
Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
+A + F+ T+E + G+ +++ +++G W + G+ P++Y++
Sbjct: 4 NSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWW---EGTHNGRTGWFPSNYVRE 60
Query: 644 I 644
I
Sbjct: 61 I 61
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 33.4 bits (77), Expect = 0.024
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
KA + F+ T+E + + G+ +Y+ +++G W + +T G+ P++Y++ I
Sbjct: 12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRT----GWFPSNYVREI 65
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 37.0 bits (86), Expect = 0.025
Identities = 13/123 (10%), Positives = 41/123 (33%), Gaps = 7/123 (5%)
Query: 102 KEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEH 161
+ L+ + + E + + + + K L + +E ++
Sbjct: 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Query: 162 LQDGDHLM-------KILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEV 214
+ + L+ +L+ + + L R + + K + + + +L+L+ +
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Query: 215 EKQ 217
Q
Sbjct: 1078 RYQ 1080
Score = 31.2 bits (71), Expect = 1.3
Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 13/166 (7%)
Query: 114 RMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILR 173
+ + + IAL+ + Y + EH + L I+
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 174 NQVDALERALKNYEKAFRDADKALEHYKRADADLE-----LSR--AEVEKQRINMAIKSQ 226
Q K K + +++E YK+ LE L R E K+ ++ K
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 227 HCEDTKTEYANQLQ------RANEMQRQHYTQAMPEVFAQLQELDE 266
+ E T + +L+ R +E + ++ T + + ++ +L +
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 33.5 bits (77), Expect = 0.026
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
KALY F+A + + + G+ + I E + W + + G P +Y++ +
Sbjct: 9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKK----GHFPAAYVEEL 62
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil,
signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP:
a.2.6.1
Length = 86
Score = 33.4 bits (76), Expect = 0.027
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 385 SNLPPSQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETD 444
++L +++L+ E ++ I++E +EG ++ D P +E L +
Sbjct: 12 ADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGP--VELLLRGSS 69
Query: 445 SRLEKLRGELQKYQTYM 461
RL+ L +LQ+ ++
Sbjct: 70 RRLDLLHQQLQELHAHV 86
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 33.4 bits (76), Expect = 0.028
Identities = 8/70 (11%), Positives = 23/70 (32%)
Query: 573 PESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSE 632
+ + + + P G + + G+ + + + + W R +E
Sbjct: 5 KKRNELGLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNE 64
Query: 633 EGFVPTSYIQ 642
G+ P + +
Sbjct: 65 VGWFPCNRVH 74
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain,
protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Length = 265
Score = 35.7 bits (81), Expect = 0.031
Identities = 31/224 (13%), Positives = 81/224 (36%), Gaps = 6/224 (2%)
Query: 2 FQDQYDNLSLHTQKGIDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYST 61
F++ +S + + + + + A + L+ K P +++ ST
Sbjct: 26 FEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSST 85
Query: 62 CKAFKCVLDEVTDLAGQHEVIAENLQVFIIKE-VTIFVKDFKEERKKHLQDGARMMNLLE 120
+ F V+DE++ + +F I + +K+ K+ Q + +
Sbjct: 86 LQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTL-KEVFQIASNDHDAAI 144
Query: 121 NQVIALERARKNYDKAYRESDKALEHYKRA--DADLELSRAEHLQDGDHLMKILRNQVDA 178
N+ L + R+N DK E + + ++ + A + + +L +
Sbjct: 145 NRYSRLSKKREN-DKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGY 203
Query: 179 LERALKNYEKAFRDADKALEHYKRA-DADLELSRAEVEKQRINM 221
++ + ++ + ++ LE + ++ R E++ M
Sbjct: 204 MQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETM 247
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 36.5 bits (84), Expect = 0.031
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 119 LENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKIL-RNQVD 177
++ ++ LE ++N + +DK E + + EL + +G+ +I Q D
Sbjct: 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGK-----ELEEVYNFMNGEANAEIEDEKQFD 149
Query: 178 ALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRIN 220
L +A+ +Y K + D + A R E +
Sbjct: 150 ILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVK 192
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 32.5 bits (75), Expect = 0.031
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
+AL+ F G + G+ + +I D + W ++ + G P++Y+
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR----GIFPSNYVC 55
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 32.6 bits (75), Expect = 0.038
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
KAL+ ++A E + + +E Q GW R ++ + P++Y++ +
Sbjct: 5 AVKALFDYKAQREDELTFTKSAIIQNVE-KQDGGWWRGDYG-GKKQLWFPSNYVEEM 59
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 32.2 bits (74), Expect = 0.045
Identities = 6/58 (10%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
+ + + ++ + + G+ + ++ + W + +T G P+++I+ +
Sbjct: 9 RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKT----GMFPSNFIKEL 62
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 35.6 bits (82), Expect = 0.046
Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 28/154 (18%)
Query: 130 RKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA-----LK 184
Y +A + K + + + S E + + N A L+
Sbjct: 160 EGKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLN------LAMCHLKLQ 210
Query: 185 NYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYA 236
+ A +KALE +R +A L ++ E+ + ++
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAK 267
Query: 237 NQLQRANEMQRQHYT---QAMPEVFAQLQELDEK 267
QL + R+ + +F +L E + K
Sbjct: 268 TQLAVCQQRIRRQLAREKKLYANMFERLAEEENK 301
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 35.2 bits (82), Expect = 0.046
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 24/118 (20%)
Query: 126 LERARKNYDKA----------------YRES---DKALEHYKRADADLELSRAEHLQDGD 166
+ A ++Y+KA E + A+ A +E R E D
Sbjct: 21 FDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDA---VEQGR-EMRADYK 76
Query: 167 HLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIK 224
+ K +A L + +K K+L ++ AD +L AE E ++
Sbjct: 77 VISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY 133
Score = 30.2 bits (69), Expect = 1.6
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 126 LERARKNYDKA-YRESDKALEHYKRADADLELSRAEH-LQDGDHLMKILRNQVDALER-- 181
A K Y + R + A + RA A +L + D + ++ N V A R
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214
Query: 182 ----ALKNYEKAFRDADKALEH---YKRADADLELSRAEVEK 216
A+K Y A D A + E+ + +
Sbjct: 215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 35.4 bits (81), Expect = 0.055
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 18/151 (11%)
Query: 130 RKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKA 189
+ ++A ++ + A+ + D +L N L + LK Y++A
Sbjct: 192 EEKLEEAMQQYEMAIAYMGD-DFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LKRYDEA 249
Query: 190 FRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQ-HCEDTKTEYAN--- 237
+ L ++R A EL + + + A K + + E
Sbjct: 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309
Query: 238 QLQRANEMQRQHYTQAMPEVFAQLQELDEKR 268
Q + + Q++ Y + + F E K
Sbjct: 310 QEKALYQKQKEMY-KGI---FKGKDEGGAKS 336
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 31.8 bits (73), Expect = 0.057
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 588 TAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTIA 645
+AL+ +EAT + +G+ + ++ + + + G P +++ A
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKV----GIFPKVFVEDSA 61
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 34.4 bits (79), Expect = 0.062
Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 20/151 (13%)
Query: 135 KAYRESD--KALEHYKRA----DADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEK 188
+ +++++ +A+ YK A E L ++ + K+Y K
Sbjct: 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPK 106
Query: 189 AFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQ 240
A A K L+ YK A++ E K+ + A + N +
Sbjct: 107 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYE 163
Query: 241 RANEMQRQHYT---QAMPEVFAQLQELDEKR 268
++ +F + +EK+
Sbjct: 164 LCVNKLKEARKKDKLTFGGMFDKGPLYEEKK 194
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.066
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 173 RNQVDALERALKNYEKAFRDADKALEHYKRA-DADLE 208
+ + L+ +LK Y D+ AL A A +E
Sbjct: 19 KQALKKLQASLKLYAD---DSAPAL-----AIKATME 47
Score = 31.8 bits (71), Expect = 0.36
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 442 ETDSRLEKLRGELQKYQTYMEESEANSPA 470
E + L+KL+ L+ Y ++S +PA
Sbjct: 18 EKQA-LKKLQASLKLYA---DDS---APA 39
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.068
Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 98 VKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELS 157
++ ++EE++K LQ+ ++E + E+A+K+ ++ + + +E K + +
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWR--EKAKKDLEEWNQRQSEQVEKNKINNRIAD-- 142
Query: 158 RAEHLQDGD 166
Q D
Sbjct: 143 -KAFYQQPD 150
Score = 29.0 bits (64), Expect = 3.3
Identities = 10/72 (13%), Positives = 26/72 (36%)
Query: 200 YKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHYTQAMPEVFA 259
R + E R E+QR + + + E+ + ++ E Q ++ + +
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 260 QLQELDEKRVRN 271
+ D+ +
Sbjct: 137 NNRIADKAFYQQ 148
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 32.0 bits (73), Expect = 0.075
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 584 PPLGTAKALYPFEAT-------SEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFV 636
ALY ++ E + G+ + + DG+ + ++G V
Sbjct: 5 SSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL--NGQKGLV 62
Query: 637 PTSYIQTI 644
P+++++ +
Sbjct: 63 PSNFLEEV 70
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 31.5 bits (72), Expect = 0.087
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQ 642
KAL+ ++A E + + +E +G W + + + P++Y++
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKK---QLWFPSNYVE 60
Query: 643 TI 644
+
Sbjct: 61 EM 62
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 32.0 bits (72), Expect = 0.090
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 590 KALYPFEATSEGSIPMYDGEELYII--------------ELDQGDGWTRVRRQTDSEEGF 635
+ALY ++ E I ++ G+ L + + GW +T E G
Sbjct: 9 RALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGD 68
Query: 636 VPTSYIQTI 644
P +Y++ I
Sbjct: 69 FPGTYVEYI 77
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 34.7 bits (80), Expect = 0.093
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 28/126 (22%)
Query: 128 RARKNYDKAYRESDKALE--------HYKRADADLELSRAEH-LQDGDHLMKILRNQVDA 178
+Y A DK LE RA+ ++ + D K+ + +A
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
Query: 179 LER------ALKNYEKAFRDADKALE----------HYKRA---DADLELSRAEVEKQRI 219
+ L ++E + + + L+ HYK+ + +E + + R
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273
Query: 220 NMAIKS 225
A
Sbjct: 274 TDATSK 279
Score = 33.9 bits (78), Expect = 0.16
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 25/123 (20%)
Query: 121 NQVIALERARKNYDKAYR----------ESDKALEHYKRA------DADLELSRAEHLQD 164
+VI L+ ++ A + D+A + +K+ + + + ++++ ++
Sbjct: 84 TKVIQLK---MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
Query: 165 GDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEV--EKQRINMA 222
M+ LR+Q +Y A DK LE DA+L RAE ++ A
Sbjct: 141 --DEMQRLRSQALNA-FGSGDYTAAIAFLDKILE-VCVWDAELRELRAECFIKEGEPRKA 196
Query: 223 IKS 225
I
Sbjct: 197 ISD 199
Score = 33.5 bits (77), Expect = 0.24
Identities = 17/131 (12%), Positives = 45/131 (34%), Gaps = 21/131 (16%)
Query: 113 ARMMNLLENQVIALERARKNYDKAYRESDKALE------------HYKRADADLELSRAE 160
+ +N L L R + Y A + + ++ + + +
Sbjct: 254 VKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312
Query: 161 H-LQDGDHLMKILRNQVDALER------ALKNYEKAFRDADKALEHY-KRADADLELSRA 212
++ ++++ + V+AL+ + Y++A +D + A EH L +A
Sbjct: 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372
Query: 213 EVEKQRINMAI 223
+ ++
Sbjct: 373 QRLLKQSQKRD 383
Score = 32.7 bits (75), Expect = 0.39
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 44/142 (30%)
Query: 129 ARKNYDKAYRESDKALE--------HYKRADADLELSRAEHLQDGDHLMKILRNQVDALE 180
A A + A++ +Y+RA +
Sbjct: 38 AAGQLADALSQFHAAVDGDPDNYIAYYRRATV---------------FL----------- 71
Query: 181 RALKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQHCEDTK 232
A+ + A D K ++ +R L+ + + + +KS E+ +
Sbjct: 72 -AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130
Query: 233 TEYANQLQRANEMQRQHYTQAM 254
E +QL +++EMQR +QA+
Sbjct: 131 KEAQSQLIKSDEMQR-LRSQAL 151
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 32.0 bits (73), Expect = 0.11
Identities = 6/56 (10%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQTI 644
+ + + ++ + + G+ + ++ + +GW + + G P+++I+ +
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVG-EVEEGWWEGVL--NGKTGMFPSNFIKEL 73
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 32.1 bits (73), Expect = 0.11
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 570 TSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQ 628
+S P + P A A + ++ + G+ + + ++ W V +
Sbjct: 2 SSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR 61
Query: 629 TDSEEGFVPTSYIQTI 644
G P ++++
Sbjct: 62 K----GLFPFTHVKIF 73
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 33.1 bits (76), Expect = 0.12
Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 24/105 (22%)
Query: 130 RKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA-----LK 184
+K+Y +A AL + E ++ + + N + +
Sbjct: 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN------MSQCYLNIG 77
Query: 185 NYEKAFRDADKALE--------HYKRADA-----DLELSRAEVEK 216
+ +A + + L+ ++RA A L+ + +++
Sbjct: 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 32.6 bits (75), Expect = 0.14
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 129 ARKNYDKAYRESDKALE--------HYKRADADLELSRAEH-LQDGDHLMKILRNQVDAL 179
+N++ A KA+E RA A +L +QD + + I A
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83
Query: 180 ER------ALKNYEKAFRDADKALEH---YKRADADLELSRAEVEK 216
R +L + +A KALE + ++L+++ ++ +
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTE 234
L NY A +D ++A+ + + A L++ A++ +
Sbjct: 59 LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE---LDPDNET 115
Query: 235 YANQLQRANEMQRQ 248
Y + L+ A R+
Sbjct: 116 YKSNLKIAELKLRE 129
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 31.1 bits (70), Expect = 0.16
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 591 ALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
+ P + + G+ + + + + W R +E G+ P + +
Sbjct: 15 GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 33.9 bits (77), Expect = 0.16
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 20/154 (12%)
Query: 130 RKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKA 189
Y +A + K + + + LS E L+ N + L+ Y KA
Sbjct: 281 GGKYMQAVIQYGKIVSWL---EMEYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKA 336
Query: 190 FRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQ-HCEDTKTEYA---N 237
DKAL Y+R +A L ++ E K ++ + + + +
Sbjct: 337 VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396
Query: 238 QLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRN 271
+ + NE R+ Y M F + E D K N
Sbjct: 397 KAKEHNERDRRIY-ANM---FKKFAEQDAKEEAN 426
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 33.3 bits (75), Expect = 0.18
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 548 SSTQLPNISLYQREEPDIGTSHTSLPESDPPEYFDLPPLGTAKALYPFEATSEGSIPMYD 607
S L + S +AL+ F E +P
Sbjct: 98 SLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 157
Query: 608 GEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQ 642
G+ L I + + W ++ + G +P Y++
Sbjct: 158 GDILRIRDKPEEQWWN--AEDSEGKRGMIPVPYVE 190
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 33.7 bits (76), Expect = 0.22
Identities = 42/291 (14%), Positives = 91/291 (31%), Gaps = 21/291 (7%)
Query: 103 EERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHL 162
+E +++ + +E+++ +LE + YD + + L
Sbjct: 5 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLL 64
Query: 163 QDGDHLMKILRNQ-VDALERALKNYEK-AFRDADKALEHYKRADADLELSRAEVEKQRIN 220
+ ++ R + V + L E + L +KR A +
Sbjct: 65 KKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQ-----SACIGGPPNA 119
Query: 221 MAIKSQHCEDTKTEYANQLQ---RANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMV 277
+ Q+ E Q++ + E Q YT + Q L ++ + +
Sbjct: 120 CLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQ 179
Query: 278 HSANIEKKVFPIINQCLDGIIKAADQINEK----EDSALVIERYKSGFTPPGDIPFEDLS 333
S +E++ + ++K Q K + K D+ +
Sbjct: 180 SSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKVKVLFDKDVNERNTV 239
Query: 334 RGGESTPIAPAFPHLMGMRPEAATVRGTMSAG----RLKRRNNVGGFGSNG 380
+G I +M M + G+++A +LK + N G + G
Sbjct: 240 KGFRKFNILGTHTKVMNM---EESTNGSLAAEFRHLQLKEQKNAGTRTNEG 287
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 33.3 bits (75), Expect = 0.26
Identities = 40/333 (12%), Positives = 96/333 (28%), Gaps = 20/333 (6%)
Query: 40 KLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVK 99
+R+ +N Q +Q + + + + E Q + +
Sbjct: 82 NIRKSKRNLQDN-----FQEDPIQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVML 136
Query: 100 DFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRA 159
D ++E +++ + +E+++ +LE + YD + +
Sbjct: 137 DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQ 196
Query: 160 EHLQDGDHLMKILRNQ-VDALERALKNYEKA-FRDADKALEHYKRADADLELSRAEVEKQ 217
L+ ++ R + V + L E + L +KR +
Sbjct: 197 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACI----GGPP 252
Query: 218 RINMAIKSQHCEDTKTEYANQLQRANEM--QRQHYTQAMPEVFAQLQELDEKRVRNIRNF 275
+ Q+ ++ Q YT + Q L ++ +
Sbjct: 253 NACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQL 312
Query: 276 MVHSANIEKKVFPIINQCLDGIIKAADQINEK----EDSALVIERYKSGFTPPGDIPFED 331
+ S +E++ + ++K Q K + K D+ +
Sbjct: 313 IQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKVKVLFDKDVNERN 372
Query: 332 LSRGGESTPIAPAFPHLMGMRPEAATVRGTMSA 364
+G I +M M + G+++A
Sbjct: 373 TVKGFRKFNILGTHTKVMNM---EESTNGSLAA 402
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 32.9 bits (74), Expect = 0.33
Identities = 28/211 (13%), Positives = 70/211 (33%), Gaps = 19/211 (9%)
Query: 98 VKDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELS 157
+ + + ++ + EN++ L++ ++ + Y+ES + + +
Sbjct: 10 MSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQE 69
Query: 158 RAEHL----QDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAE 213
R Q L L+ + L++ + + + L + D EL + +
Sbjct: 70 RMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWK 129
Query: 214 VEKQRINMAIKSQHCEDT-----------KTEYANQLQRANEMQRQ-HYTQAMPEVFAQL 261
+Q + D + Q++RA + +Q + E L
Sbjct: 130 RRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLCQQLPIPGPVEE---ML 186
Query: 262 QELDEKRVRNIRNFMVHSANIEKKVFPIINQ 292
E++ I + + IEK+ ++
Sbjct: 187 AEVNATITDIISALVTSTFIIEKQPPQVLKT 217
>3pr7_A USPA1; beta-roll and coiled-coil, adhesin, extracellular, membrane;
2.94A {Moraxella catarrhalis}
Length = 311
Score = 32.7 bits (74), Expect = 0.33
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 464 SEANSPAGMRKNSGGGGNNNVNSTSGSSGGVNGVQTQQQRVNVNGGSNNN-RDERANSAG 522
N G GG N + GG + Q + GG NN + + G
Sbjct: 50 GLFNEATNEYSTIGSGGYNKAKGRYSTIGGGGYNEATNQYSTIGGGDNNTAKGRYSTIGG 109
Query: 523 EEEESLSRSASDSSVHNNNHSKLNSSST 550
+ S N +K +S+
Sbjct: 110 GGYNEATIENSTVGGGGYNQAKGRNSTV 137
Score = 30.8 bits (69), Expect = 1.2
Identities = 13/85 (15%), Positives = 29/85 (34%)
Query: 466 ANSPAGMRKNSGGGGNNNVNSTSGSSGGVNGVQTQQQRVNVNGGSNNNRDERANSAGEEE 525
N G GGG N + + G + + + + GG N + ++ G +
Sbjct: 37 YNKTKGRYSTIGGGLFNEATNEYSTIGSGGYNKAKGRYSTIGGGGYNEATNQYSTIGGGD 96
Query: 526 ESLSRSASDSSVHNNNHSKLNSSST 550
+ ++ + + +ST
Sbjct: 97 NNTAKGRYSTIGGGGYNEATIENST 121
Score = 29.2 bits (65), Expect = 4.6
Identities = 16/84 (19%), Positives = 32/84 (38%)
Query: 467 NSPAGMRKNSGGGGNNNVNSTSGSSGGVNGVQTQQQRVNVNGGSNNNRDERANSAGEEEE 526
N+ G GGGG N + + GG Q + + V GG NN ++ +
Sbjct: 98 NTAKGRYSTIGGGGYNEATIENSTVGGGGYNQAKGRNSTVAGGYNNEATGTDSTIAGGRK 157
Query: 527 SLSRSASDSSVHNNNHSKLNSSST 550
+ + + +N + +++
Sbjct: 158 NQATGKGSFAAGIDNKANADNAVA 181
Score = 28.8 bits (64), Expect = 5.7
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 470 AGMRKNSGGGGNNNVNSTSGSSGGVNGVQTQQQRVNVNGGSNNNRDERANSAGEEEESLS 529
A + ++ GGG N S+ + G N+ +
Sbjct: 115 ATIENSTVGGGGYNQAKGRNSTVAGGYNNEATGTDSTIAGGRKNQA--TGKGSFAAGIDN 172
Query: 530 RSASDSSVHNNNHSKLNSSST 550
++ +D++V N + + ++
Sbjct: 173 KANADNAVALGNKNTIEGENS 193
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 32.6 bits (75), Expect = 0.35
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 15/86 (17%)
Query: 128 RARKNYDKAYRESDKALE--------HYKRADADLELSRAEH-LQDGDHLMKILRNQVDA 178
+Y A DK LE RA+ ++ + D K+ + +A
Sbjct: 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190
Query: 179 L------ERALKNYEKAFRDADKALE 198
L ++E + + + L+
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLK 216
Score = 31.9 bits (73), Expect = 0.67
Identities = 17/126 (13%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 113 ARMMNLLENQVIALERARKNYDKAYRESDKALE------------HYKRADADLELSRAE 160
+ +N L L R + Y A + + ++ + + +
Sbjct: 231 VKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289
Query: 161 H-LQDGDHLMKILRNQVDALER------ALKNYEKAFRDADKALEHY-KRADADLELSRA 212
++ ++++ + V+AL+ + Y++A +D + A EH L +A
Sbjct: 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349
Query: 213 EVEKQR 218
+ ++
Sbjct: 350 QRLLKQ 355
Score = 30.3 bits (69), Expect = 1.9
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 129 ARKNYDKAYRESDKALE--------HYKRADADLELSRAEH-LQDGDHLMKILRNQVDAL 179
A A + A++ +Y+RA L + +++ L D ++ + + A
Sbjct: 15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR 74
Query: 180 ER------ALKNYEKAFRDADKALE 198
+ ++A D K L+
Sbjct: 75 LQRGHLLLKQGKLDEAEDDFKKVLK 99
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 32.5 bits (74), Expect = 0.42
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 139 ESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALE 198
+ A+EH+++A ++SR + D L K+L L + +KAF+ ++ L+
Sbjct: 237 DDQMAVEHFQKA---AKVSREK---VPDLLPKVLFGLSWTLCK-AGQTQKAFQFIEEGLD 289
Query: 199 HYKRAD 204
H
Sbjct: 290 HITARS 295
Score = 28.2 bits (63), Expect = 8.9
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHY 200
DKAL H + A L A +Q+ + L N ++ +R + + A KA +
Sbjct: 199 DKALPHLEAA-----LELAMDIQNDRFIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVS 252
Query: 201 KRADAD 206
+ D
Sbjct: 253 REKVPD 258
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 32.6 bits (74), Expect = 0.42
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 129 ARKNYDKAYRES---DKALEHYKRADADLEL---SRAEHLQDGDHLMKILRNQVDALERA 182
++ K YR DKA+E K+A LE + H Q G + ++ E
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKA---LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305
Query: 183 LKNYEKAFRDADKALEHYKRA 203
+ K A+ H K+A
Sbjct: 306 MYGKRKLLELIGHAVAHLKKA 326
Score = 29.5 bits (66), Expect = 4.0
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 32/124 (25%)
Query: 125 ALERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALK 184
E K A+ H K+A E + L + E A
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKA---DEA-NDNLFRVCSILASLHALADQ-YEEAEY 355
Query: 185 NYEKAF------------------------RDADKALEHYKRADADLELSRAEVEKQRIN 220
++K F + DKA+ H+ +++++ EK+++
Sbjct: 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG---VKINQKSREKEKMK 412
Query: 221 MAIK 224
++
Sbjct: 413 DKLQ 416
Score = 28.4 bits (63), Expect = 9.4
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 139 ESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALE 198
+++ ALE ++A EL + EH + + + + DK
Sbjct: 66 QNEAALECLRKA---EELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122
Query: 199 HYKRADADLELSRAEV 214
++ + + E+
Sbjct: 123 VCEKFSSPYRIESPEL 138
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 32.4 bits (74), Expect = 0.44
Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 16/104 (15%)
Query: 126 LERARKNYDKAYR-ESDKALEHYKRADADLELSR-AEHLQDGDHLMKILRNQVDALE--- 180
++R +A+ + + + L L + QV A+
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317
Query: 181 ---RALKNYEKAFRDADKALE--------HYKRADADLELSRAE 213
+AL+ ++ +A L +
Sbjct: 318 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Score = 31.3 bits (71), Expect = 0.99
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 125 ALERARKNYDKAYR-ESDKALEHYKRADADLELSR-AEHLQDGDHLMKILRNQVDAL--- 179
++R +A+ ++ + L L + QV A+
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 452
Query: 180 ---ERALKNYEKAFRDADKALE 198
AL++ D AL
Sbjct: 453 GGGRPALESIVAQLSRPDPALA 474
Score = 30.9 bits (70), Expect = 1.4
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 126 LERARKNYDKAYR-ESDKALEHYKRADADLELSR-AEHLQDGDHLMKILRNQVDALE--- 180
++R +A+ + + L L + QV A+
Sbjct: 326 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNG 385
Query: 181 ---RALKNYEKAFRDADKALE 198
+AL+ ++ +A
Sbjct: 386 GGKQALETVQRLLPVLCQAHG 406
Score = 30.5 bits (69), Expect = 2.0
Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 16/104 (15%)
Query: 126 LERARKNYDKAYR-ESDKALEHYKRADADLELSR-AEHLQDGDHLMKILRNQVDALE--- 180
++R +A+ + + L L + QV A+
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249
Query: 181 ---RALKNYEKAFRDADKALE--------HYKRADADLELSRAE 213
+AL+ ++ +A + L +
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQ 293
Score = 29.7 bits (67), Expect = 3.6
Identities = 12/115 (10%), Positives = 29/115 (25%), Gaps = 16/115 (13%)
Query: 126 LERARKNYDKAYR-ESDKALEHYKRADADLELSR-AEHLQDGDHLMKILRNQVDAL---- 179
++R +A+ ++ + L L + QV A+
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181
Query: 180 --ERALKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIK 224
++AL+ ++ +A L + + A
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 32.5 bits (74), Expect = 0.44
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 139 ESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALE 198
+ + A+ ++KRA ++ E L + L +KA K +
Sbjct: 239 QYEDAIPYFKRA-----IAVFEESNILPSLPQAYFLITQIH-YKLGKIDKAHEYHSKGMA 292
Query: 199 HYKRAD 204
+ ++A
Sbjct: 293 YSQKAG 298
Score = 28.2 bits (63), Expect = 8.4
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRN------QVDALERALKNYEKAFRDAD 194
+ A+ H+++A S AE + + + L N E A+ +++A +
Sbjct: 201 EDAISHFQKA-----YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255
Query: 195 KALEHYKRADADLELSRAEVEKQRINMAIK 224
++ A +++ + +I+ A +
Sbjct: 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHE 285
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 111
Score = 30.6 bits (69), Expect = 0.54
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 252 QAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAAD 302
QA+PE F Q +R IRN+++ I K + G+ D
Sbjct: 33 QAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGD 83
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 31.8 bits (72), Expect = 0.56
Identities = 19/154 (12%), Positives = 49/154 (31%), Gaps = 28/154 (18%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIK--SQHCEDTK 232
++ E+A D +ALE H+ LE+ + + A + +
Sbjct: 51 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Query: 233 TEYANQLQRANEMQRQHYTQA----------------MPEVFAQLQELDEKRVRNIRNFM 276
+ + L+ A + + + E +L+E + +
Sbjct: 111 DDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGH 170
Query: 277 VHS--ANIEKKVFPIINQCLDGIIKAADQINEKE 308
+ + A IE K + + + ++ +++
Sbjct: 171 IRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 31.2 bits (71), Expect = 0.63
Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTE 234
+ Y A DA +A+E +Y+RA +++ L + + +K + +
Sbjct: 60 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK---VKPHDKD 116
Query: 235 YANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFMVHSANIEKK 285
+ Q N++ +Q + F + DE + + + + S IE +
Sbjct: 117 AKMKYQECNKIVKQ-------KAFERAIAGDEHKRSVVDSLDIESMTIEDE 160
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 31.9 bits (73), Expect = 0.67
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 43/109 (39%)
Query: 125 ALERARKNYDK------------AYR---ESDKALEHYKRADADLELSRAEHLQDGDHLM 169
L+ R D+ Y + A+EH++ L ++R + GD
Sbjct: 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER---LRIAR----EFGDR-- 259
Query: 170 KILRNQVDALE------RALKNYEKAFRDADKALEHYKRADADLELSRA 212
+ A L + + A EHYKR L L+
Sbjct: 260 ---AAERRANSNLGNSHIFLGQF-------EDAAEHYKRT---LALAVE 295
Score = 31.5 bits (72), Expect = 0.92
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 36/114 (31%)
Query: 125 ALERARKNYDK------------AYR---ESDKALEHYKRADADLELSRAEHLQDGDHL- 168
L A+ D+ + D+A +R L L+R Q GD L
Sbjct: 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH---LTLAR----QLGDRLS 164
Query: 169 -MKILRN---------QVDALERALKNYEKAFRDADKALEHYKRADADLELSRA 212
+ L N + K + +A+E Y+ L+L R
Sbjct: 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN---LKLMRD 215
Score = 30.3 bits (69), Expect = 2.1
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 43/107 (40%)
Query: 125 ALERARKNYDK------------AYR---ESDKALEHYKRADADLELSRAEHLQDGDHLM 169
L A + ++ Y E + A+E++ R L +++ + GD
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH---LAIAQ----ELGDR-- 339
Query: 170 KILRNQVDALE------RALKNYEKAFRDADKALEHYKRADADLELS 210
+ A A+ +E+A L++ ++ L+L+
Sbjct: 340 ---IGEARACWSLGNAHSAIGGHERA-------LKYAEQH---LQLA 373
Score = 30.0 bits (68), Expect = 2.6
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 43/108 (39%)
Query: 125 ALERARKNYDK------------AYR---ESDKALEHYKRADADLELSRAEHLQDGDHLM 169
L AR+ D+ ++ + + A EHYKR L L+ + G+
Sbjct: 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT---LALAV----ELGER-- 299
Query: 170 KILRNQVDALE------RALKNYEKAFRDADKALEHYKRADADLELSR 211
+ + L + + A+E++ R L +++
Sbjct: 300 ---EVEAQSCYSLGNTYTLLHEF-------NTAIEYHNRH---LAIAQ 334
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 30.3 bits (69), Expect = 0.69
Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHY 200
+ ++ ++A +E+ R E D + K + +A + + A + ++L +
Sbjct: 59 AECVQFCEKA---VEVGR-ETRADYKLIAKAMSRAGNAFQ-KQNDLSLAVQWFHRSLSEF 113
Query: 201 KRADADLELSRAE 213
+ + ++ E
Sbjct: 114 RDPELVKKVKELE 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 30.3 bits (69), Expect = 0.70
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTE 234
L ++ A +D ++ ++ + ++A A + A+ + + E
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD---LDSSCKE 119
Query: 235 YANQLQRANEMQR 247
A+ QR Q
Sbjct: 120 AADGYQRCMMAQY 132
Score = 29.1 bits (66), Expect = 1.9
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 129 ARKNYDKAYRESDKALEHYK--------RADADLELSRAEH-LQDGDHLMKILRNQVDAL 179
+ +Y +A + +A++ RA +L + L+D + +++ +
Sbjct: 28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 87
Query: 180 ER------ALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRIN 220
R A+K+Y KA KAL+ + + + N
Sbjct: 88 TRKAAALEAMKDYTKAMDVYQKALDL-DSSCKEAADGYQRCMMAQYN 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 30.3 bits (69), Expect = 0.72
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 18/108 (16%)
Query: 129 ARKNYDKAYRESDKALEHYK--------RADADLELSR-AEHLQDGDHLMKILRNQVDAL 179
+ ++ A + + ++ RA A +L E + D + ++ N V A
Sbjct: 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75
Query: 180 ER------ALKNYEKAFRDADKALEH---YKRADADLELSRAEVEKQR 218
R A+K Y A D A + E+ + + +
Sbjct: 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123
Score = 27.6 bits (62), Expect = 5.8
Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIK---SQHCEDT 231
L ++ +A D +KA+E + ++A A + + + ++ A + +
Sbjct: 51 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110
Query: 232 KTEYANQLQRANEMQ 246
E +A++ +
Sbjct: 111 AREIDQLYYKASQQR 125
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 30.2 bits (69), Expect = 0.79
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTE 234
+Y+KA+ D K ++ + ++A A L+R E K+ +K E +
Sbjct: 51 KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK---HEANNPQ 107
Query: 235 YANQLQRANE 244
LQ
Sbjct: 108 LKEGLQNMEA 117
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 31.8 bits (71), Expect = 0.84
Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 5/190 (2%)
Query: 42 RRLVKNYQPKKEEEDYQYSTC--KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVK 99
+K + + Q T + ++ E + + + K
Sbjct: 128 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI---NIEQLWRDYNKYEEGINIHLAK 184
Query: 100 DFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRA 159
E+R + + R+ E + L+R + + + E S
Sbjct: 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244
Query: 160 EHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRI 219
+D + K + + L ++ + +A + LE + A+
Sbjct: 245 LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304
Query: 220 NMAIKSQHCE 229
I +
Sbjct: 305 AANIYERAIS 314
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 30.5 bits (69), Expect = 0.88
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 182 ALKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIK---SQHCED 230
A +EKA DA+ A + A +++ + K+ I+ + +
Sbjct: 57 ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116
Query: 231 TKTEYANQLQRANEMQR 247
K ++ E R
Sbjct: 117 MKRGLETTKRKIEEANR 133
Score = 30.5 bits (69), Expect = 0.91
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 129 ARKNYDKAYRESDKALE--------HYKRADADLELSRAEH-LQDGDHLMKILRNQVDAL 179
ARK Y KA +AL RA A + E +D + + A
Sbjct: 23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82
Query: 180 ER------ALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQ 226
R + +Y+ A +K +E +D E K++I A +
Sbjct: 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGA 135
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 31.6 bits (70), Expect = 0.94
Identities = 27/257 (10%), Positives = 60/257 (23%), Gaps = 29/257 (11%)
Query: 20 LEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQYSTCKAFKCVLDEVTDLAGQH 79
++K F EY +++++P + E+ Q K +
Sbjct: 174 VDKCAIFEPKSIQFWNEY----LHFLEHWKPVNKFEEQQRVQ-YIRKLYKTLLCQPMDCL 228
Query: 80 EVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERAR--------K 131
E + + + + + E + + N L+R +
Sbjct: 229 ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288
Query: 132 NYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKI----------LRNQVDALER 181
+ E D E L D H ++ + +
Sbjct: 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFN 348
Query: 182 ALKNYEKAFRDADKALEHYKRA------DADLELSRAEVEKQRINMAIKSQHCEDTKTEY 235
+ D+ ++ K A L S +E + +
Sbjct: 349 MANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408
Query: 236 ANQLQRANEMQRQHYTQ 252
L E + +
Sbjct: 409 HLDLAALMEDDPTNESA 425
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 31.5 bits (71), Expect = 0.97
Identities = 11/104 (10%), Positives = 27/104 (25%), Gaps = 16/104 (15%)
Query: 126 LERARKNYDKAY-RESDKALEHYKRADADLELSR-AEHLQDGDHLMKILRNQVDAL---- 179
++R +A+ + + L L + +QV A+
Sbjct: 615 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 674
Query: 180 --ERALKNYEKAFRDADKALE--------HYKRADADLELSRAE 213
++AL+ ++ +A L +
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQ 718
Score = 30.4 bits (68), Expect = 2.6
Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 16/105 (15%)
Query: 125 ALERARKNYDKAYR-ESDKALEHYKRADADLELSRA-EHLQDGDHLMKILRNQVDAL--- 179
++R +A+ D+ + L L + +QV A+
Sbjct: 241 TMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASH 300
Query: 180 ---ERALKNYEKAFRDADKALE--------HYKRADADLELSRAE 213
++AL+ ++ +A L +
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL
capsid, single-stranded DNA, icosahedral virus; HET:
DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB:
1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A
1c8e_A 1c8f_A 1c8g_A
Length = 584
Score = 31.4 bits (70), Expect = 1.1
Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 7/133 (5%)
Query: 469 PAGMRKNSGGGGNNNVNSTSGSSGGVNGVQTQQQRVNVNGG----SNNNRDERANSAGEE 524
G + G + +G ++ + GE
Sbjct: 335 EVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGNPRYAFGRQHGQKTTTTGET 394
Query: 525 EESLSRSASDSSVHNNNHSKLNSSSTQLP--NISLYQREEPDIGTSHTSLPESDPPEYFD 582
E + A + + + + LP N ++ +P G + + Y
Sbjct: 395 PERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKTGINYTNIFNT-YGP 453
Query: 583 LPPLGTAKALYPF 595
L L +YP
Sbjct: 454 LTALNNVPPVYPN 466
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 31.2 bits (71), Expect = 1.1
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 130 RKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKA 189
+N++ A ++ K L + + + A E + LQ + + A + + +++ A
Sbjct: 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP---VALSCVLNIGACKLKMSDWQGA 292
Query: 190 FRDADKALE--------HYKRADADLELSRAE 213
+ALE Y+RA L +
Sbjct: 293 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 324
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 31.2 bits (71), Expect = 1.2
Identities = 9/87 (10%), Positives = 18/87 (20%), Gaps = 5/87 (5%)
Query: 127 ERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNY 186
A K+ L D E + G L A
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN-----LLDAQVLL 266
Query: 187 EKAFRDADKALEHYKRADADLELSRAE 213
+++ + A + ++
Sbjct: 267 QESINLHPTPNSYIFLALTLADKENSQ 293
Score = 30.8 bits (70), Expect = 1.7
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 25/124 (20%)
Query: 126 LERARKNYDKAYR-ESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALE---- 180
+ A K YD A R E + H + + D A++
Sbjct: 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453
Query: 181 -------------------RALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINM 221
++ ++A + + R + + E +I
Sbjct: 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI-LARTMDEKLQATTFAEAAKIQK 512
Query: 222 AIKS 225
+++
Sbjct: 513 RLRA 516
Score = 28.9 bits (65), Expect = 6.5
Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 15/103 (14%)
Query: 126 LERARKNYDKAYRESDKALEHYKRADADLELSRAEH-LQDGDHLMKILRNQVDA------ 178
L A+ ++ + A + ++ + + +
Sbjct: 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ 318
Query: 179 LERALKNYEKAFRDADKALE--------HYKRADADLELSRAE 213
+ L++Y+ A D KA + + A + +
Sbjct: 319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 31.1 bits (70), Expect = 1.2
Identities = 17/152 (11%), Positives = 36/152 (23%), Gaps = 24/152 (15%)
Query: 103 EERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHL 162
K + + + + + A + A L
Sbjct: 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEF-------EPAEIVLEEL-----NENARSL 286
Query: 163 QDGDHLMKILRNQVDALERALKNYEKAFRDADKAL-----EHYKRADADLELSRAEVEKQ 217
+ L + L + A R AL + E Q
Sbjct: 287 RLMSDLNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLANRTGFISHFVIE----GEAMAQ 341
Query: 218 RINMAIKSQHCEDTKTEYANQLQRANEMQRQH 249
++ I+ + + A ++ R E+ + H
Sbjct: 342 QLRQLIQLNTLPELEQHRAQRILR--EINQHH 371
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 30.7 bits (70), Expect = 1.4
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 128 RARKNYD-KAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNY 186
RAR N + A +Y++ +E+ + D L++ ++
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKL---IEVCAPGGAKYKDELIEANEYIAYYY-TINRDK 237
Query: 187 EKAFRDADKALE 198
KA L
Sbjct: 238 VKADAAWKNILA 249
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 28.1 bits (63), Expect = 1.4
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 589 AKALYPFEATSEGSIPMYDGEELYIIELDQGDGWT-RVRRQTDSEEGFVPTSYIQTI 644
+ S+ + G+ + II W + + G Y+ +
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKV----GTFKFIYVDVL 66
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.0 bits (70), Expect = 1.6
Identities = 26/218 (11%), Positives = 69/218 (31%), Gaps = 18/218 (8%)
Query: 63 KAFKCVLDEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQ 122
A D+ T + E ++ F + F + Q ++
Sbjct: 714 DAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIES-- 771
Query: 123 VIALERARKNYDKAYRESDKALEHYK-RADADLELSRAEHLQDGDHLMKILRNQVDALER 181
E+ +K++ K + E +A + + + + ++ + + +
Sbjct: 772 ----EKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDE 827
Query: 182 ALKNYEKAFRDADKALEHYKRADADL-ELSRAEVEKQR----------INMAIKSQHCED 230
+ AD+ ++ Y+ A D+ + R E E ++ + + ++
Sbjct: 828 KFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQE 887
Query: 231 TKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKR 268
+Y L + Q + + + EV ++ R
Sbjct: 888 INLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNR 925
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 30.4 bits (69), Expect = 1.7
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 126 LERARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKN 185
ERA+ + DK ++ +S + Q+ + + E K+
Sbjct: 5 FERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKD 64
Query: 186 YEKAFR---------DADKALEHYKRA 203
+ AF D + + A
Sbjct: 65 WPGAFEEGLKRLKEGDLPVTILFMEAA 91
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 30.3 bits (69), Expect = 1.7
Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 60/153 (39%)
Query: 126 LERARKNYDKAYR--------------------ESDKALEHYKRADADLELSRAEHLQDG 165
+A + + A + +DKA E +++A L +
Sbjct: 24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA---LSIKP----DSA 76
Query: 166 D---HLMKILRNQVDALERALKNYEKAFRDA----------------------DKALEHY 200
+ + L +++ ++ ++KA D A +
Sbjct: 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL 136
Query: 201 KRA--------DADLELSRAEVEKQRINMAIKS 225
KR+ A EL+R ++ ++ A
Sbjct: 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYY 169
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 30.3 bits (69), Expect = 1.8
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 147 YKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHYKRADAD 206
Y A DL ++A + V+ ++ L + ++ D+AL ++A+A
Sbjct: 62 YDSAKGDLAKAQAAANIA--------QLTVNRYQKLLGTQYISKQEYDQALADAQQANAA 113
Query: 207 LELSRAEVEKQRIN 220
+ ++A VE RIN
Sbjct: 114 VTAAKAAVETARIN 127
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 30.2 bits (67), Expect = 1.9
Identities = 19/205 (9%), Positives = 60/205 (29%), Gaps = 18/205 (8%)
Query: 70 DEVTDLAGQHEVIAENLQVFIIKEVTIFVKDFKEERKKHLQDGARMMNLLENQVIALERA 129
DE+ D + + + KE +++ + +M+ +
Sbjct: 36 DEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRA----AQAASKTLMDSVCEIYEPQWSG 91
Query: 130 RKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKA 189
S+ + D L ++ +V+ R L +Y+
Sbjct: 92 YDALQAQTGASESLWADFAHKLGDQVLIPLNTYTG---QFPEMKKKVEKRNRKLIDYDGQ 148
Query: 190 FRDADKALEHYKRADADLELSRAEVEKQR-------INMAIKS---QHCEDTKTEYANQL 239
+ + D++L++ + + +N + + L
Sbjct: 149 RHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNL 208
Query: 240 QRANEMQRQHYTQAMPEVFAQLQEL 264
Q ++ + + +++++L+ +
Sbjct: 209 QTLFATEQVFHNE-TAKIYSELEAI 232
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 29.9 bits (68), Expect = 1.9
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 16/72 (22%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHY 200
D+A ++ +A+ D + L V +ER N+ D A +
Sbjct: 43 DEARASFQAL-----QQQAQKSGDHTAEHRALHQ-VGMVERMAGNW-------DAARRCF 89
Query: 201 KRADADLELSRA 212
EL +
Sbjct: 90 LEE---RELLAS 98
Score = 29.2 bits (66), Expect = 3.2
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 15/72 (20%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHY 200
D A + EL + L + +V + + A + Y
Sbjct: 83 DAARRCFLEE---RELLAS--LPEDPLAASANAYEVATVALHFGDL-------AGARQEY 130
Query: 201 KRADADLELSRA 212
+++ L ++
Sbjct: 131 EKS---LVYAQQ 139
Score = 28.0 bits (63), Expect = 8.1
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHY 200
A + Y+++ L ++ Q D A R L + + ++ +A +H+
Sbjct: 124 AGARQEYEKS---LVYAQ----QADDQ-----VAIACAF-RGLGDLAQQEKNLLEAQQHW 170
Query: 201 KRADADLELSRA 212
RA ++
Sbjct: 171 LRA---RDIFAE 179
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 30.1 bits (67), Expect = 2.1
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 23/173 (13%)
Query: 119 LENQVIALERARKNYDKAYRESDKALE---HYKRADADLELSRAEHLQDGDH--LMKILR 173
L+ V A+ + A E+ Y A A L A D + L
Sbjct: 104 LDALVRREIAAQLDGSPAQAEALGVWRRYRAYFDALAQLPGDGAVLGDKLDPAAMQLALD 163
Query: 174 NQVDALERALKNYEKAFRDADKALEHY--KRADADLELSRAEVEKQRINMAIKSQHCEDT 231
+ +R L + + F ++ + + +R + + + +K A+ +Q D
Sbjct: 164 QRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDE 223
Query: 232 KTEYANQL------QRANEMQRQHYTQAM----------PEVFAQLQELDEKR 268
+ + A + ++Q+ T PE A+ ++ +
Sbjct: 224 RAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDD 276
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 29.2 bits (66), Expect = 2.2
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAEVEKQRINMAIK--SQHCEDTK 232
++ E+A D +ALE H+ LE+ + + A + +
Sbjct: 56 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 115
Query: 233 TEYANQLQRANEMQRQH 249
+ + L+ A + +
Sbjct: 116 DDIPSALRIAKKKRWNS 132
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 30.0 bits (67), Expect = 2.3
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 173 RNQVDALERALKNYEKAFRDA----DKALEHYKRADADLELSRAEVEKQRINMAIKSQHC 228
+ V+A+ LK Y + ++D D+ E Y R +L++ R +E + I +
Sbjct: 10 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG 69
Query: 229 ---EDTKTEYANQLQRANEMQRQHYTQAMPEVFAQ-LQELDEKRVRN 271
E EY + +R + E + E+ E R +
Sbjct: 70 QTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKL 116
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 29.0 bits (66), Expect = 2.5
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 43/108 (39%)
Query: 125 ALERARKNYDK------------AYR---ESDKALEHYKRADADLELSRAEHLQDGDHLM 169
L AR+ D+ Y + +KA++++ + L +++ + D
Sbjct: 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH---LAIAQ----ELKDR-- 125
Query: 170 KILRNQVDALE------RALKNYEKAFRDADKALEHYKRADADLELSR 211
+ A AL N+ D+A+ ++ LE+SR
Sbjct: 126 ---IGEGRACWSLGNAYTALGNH-------DQAMHFAEKH---LEISR 160
Score = 28.7 bits (65), Expect = 4.0
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 16/72 (22%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALEHY 200
A+ +++ L +++ D N +A L + + A E+Y
Sbjct: 26 RDAVIAHEQR---LLIAKE--FGDKAAERIAYSNLGNAY-IFLGEF-------ETASEYY 72
Query: 201 KRADADLELSRA 212
K+ L L+R
Sbjct: 73 KKT---LLLARQ 81
Score = 27.9 bits (63), Expect = 7.9
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 28/78 (35%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDAL------ERALKNYEKAFRDAD 194
+ A E+YK+ L L+R Q D + + L++Y +
Sbjct: 66 ETASEYYKKT---LLLAR----QLKDR-----AVEAQSCYSLGNTYTLLQDY-------E 106
Query: 195 KALEHYKRADADLELSRA 212
KA++++ + L +++
Sbjct: 107 KAIDYHLKH---LAIAQE 121
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 28.5 bits (64), Expect = 2.7
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 139 ESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAFRDADKALE 198
+A+ +Y++A + G L + R L Y KA ++
Sbjct: 5 LEAQAVPYYEKA---IASG-----LQGKDLAECYLGLGSTF-RTLGEYRKAEAVLANGVK 55
Query: 199 HY 200
+
Sbjct: 56 QF 57
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 28.7 bits (65), Expect = 2.8
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 129 ARKNYDKAYRESDKALEHYK--------RADADLELSRAEH-LQDGDHLMKILRNQVDAL 179
+ +Y A R ++A++ RA +L + L D D +++ +
Sbjct: 25 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84
Query: 180 ER------ALKNYEKAFRDADKALEH 199
R A++ + KA R + AL+
Sbjct: 85 IRKAACLVAMREWSKAQRAYEDALQV 110
Score = 27.6 bits (62), Expect = 5.8
Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAE 213
L +++A D D + + ++A + +
Sbjct: 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWS 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 29.3 bits (66), Expect = 2.9
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERA-----LKNYEKAFRDADK 195
+A+ ++++ L + R E + + A E A +NY+KA+ +
Sbjct: 21 GQAVSYFRQT-IALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79
Query: 196 ALEHY-KRADADLELSRAEVEKQRINMAIKS 225
L+ D + +V + + A++
Sbjct: 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRM 110
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor
binding domains, glyco hydrolase, growth factor,
secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Length = 508
Score = 29.9 bits (67), Expect = 3.1
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 8/72 (11%)
Query: 186 YEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEM 245
++ R E R L L+ E M +K E ++
Sbjct: 4 IDET-RAHLLLKEKMMRLGGRLVLNTKEELANERLMTLKIA-------EMKEAMRTLIFP 55
Query: 246 QRQHYTQAMPEV 257
H+ QA +
Sbjct: 56 PSMHFFQAKHLI 67
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 29.9 bits (66), Expect = 3.1
Identities = 33/223 (14%), Positives = 69/223 (30%), Gaps = 18/223 (8%)
Query: 99 KDFKEERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSR 158
+DF++ R+KH + LE L+ + ++ + A A L +
Sbjct: 51 EDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQ 110
Query: 159 AEHLQDGDHLMKILRNQVDALERALKNYEKAFRDAD----------KALEHYKRADADLE 208
AE + L N++ LER EK + A + L A L
Sbjct: 111 AEK-----GYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLT 165
Query: 209 LSRAEVEKQRINMAIKSQHCE--DTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDE 266
RA + K + + H + + A +L + + ++ Q L
Sbjct: 166 EVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGT 225
Query: 267 KRVRNIRNFMVHSANIEKKVFPIINQCLDGIIKAADQINEKED 309
+ R + + + + + + + + +
Sbjct: 226 L-TQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAME 267
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor,
chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Length = 258
Score = 29.5 bits (65), Expect = 3.1
Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 10/169 (5%)
Query: 111 DGARMMNLLENQVIALERARKNYDKAYRESDKA---LEHYKRADADLELSRAEHLQDGDH 167
+ L + L AR Y A + A L +
Sbjct: 19 SHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPEN- 77
Query: 168 LMKILRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQH 227
+ L + Y+ + + + + A ++ S ++ ++ +
Sbjct: 78 -----VKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMA 132
Query: 228 CEDTKTEYANQLQRANEMQRQHYTQAMPEVFAQLQELDEKRVRNIRNFM 276
+ + Q Q ++ RQ Q +V + E + +
Sbjct: 133 RPEADSVRLAQYQLISKA-RQQLLQVRIDVRGYIAENSSANEQAALRQL 180
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 27.3 bits (61), Expect = 3.1
Identities = 7/61 (11%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 584 PPLGTAKALYPFEATSEGSIPMYDGEELYIIELDQGDGWTRVRRQTDSEEGFVPTSYIQT 643
P A A + ++ + G+ + + ++ +G + + +G P ++++
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNI-NGQWEG--EVNGRKGLFPFTHVKI 57
Query: 644 I 644
Sbjct: 58 F 58
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 29.3 bits (66), Expect = 3.2
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 126 LERARKNYDKAYRE-SDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALK 184
+ A K+ +A + L YK +L E +L N + +
Sbjct: 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE----------VLYNIAFMYAK-KE 135
Query: 185 NYEKAFRDADKALE-HYKRADADLELSRAEVEKQ 217
++KA A + + ++ + V KQ
Sbjct: 136 EWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ 169
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 29.5 bits (66), Expect = 3.2
Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDAL------ERALKNYEKAFRDAD 194
KA+ Y++A + E+ + +++ L + A + +K
Sbjct: 132 SKAVHLYQQA-----AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186
Query: 195 KALEHYKRADADLELSRAEVEKQRINMAIK 224
+ + + ++ + A K
Sbjct: 187 EMENYPTCYKKCIAQVLVQLHRADYVAAQK 216
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 29.6 bits (66), Expect = 3.5
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 177 DALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYA 236
++R L + F+D + + + A+ IN ++ K A
Sbjct: 243 WYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYK-NRA 301
Query: 237 N 237
Sbjct: 302 Q 302
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 29.4 bits (65), Expect = 4.0
Identities = 17/133 (12%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 131 KNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAF 190
K ++ L+ + + E +K+ N AL YE++
Sbjct: 169 GYLKKGIDLFEQILKQLEALHDNEEF-----------DVKVRYNHAKALYL-DSRYEESL 216
Query: 191 RDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEYANQLQRANEMQRQHY 250
+KA+E R ++ + + ++ ++ + + Y + ++ Y
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLE-YEEAEIEDAYKKASFFFDILEMHAY 275
Query: 251 TQAMPEVFAQLQE 263
+A+ ++L+
Sbjct: 276 KEALVNKISRLEH 288
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 28.0 bits (63), Expect = 4.5
Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 34/134 (25%)
Query: 129 ARKNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEK 188
+K++D A + DKA E + ++A A+ +Y K
Sbjct: 16 KKKDFDTALKHYDKAKELDPT-NMTYITNQA------------------AVYFEKGDYNK 56
Query: 189 AFRDADKALE---------------HYKRADADLELSRAEVEKQRINMAIKSQHCEDTKT 233
+KA+E + + ++ + + + N ++ D
Sbjct: 57 CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116
Query: 234 EYANQLQRANEMQR 247
+ + E +R
Sbjct: 117 KCQQAEKILKEQER 130
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 28.1 bits (63), Expect = 4.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 183 LKNYEKAFRDADKALE--------HYKRADADLELSRAE 213
L++Y+KA +A KA+E Y+R+ A +L R +
Sbjct: 78 LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLD 116
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 29.2 bits (65), Expect = 5.5
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 131 KNYDKAYRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYEKAF 190
+ A+ AL H K + LS D + R+ + +++ + A
Sbjct: 151 GDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRH----VMDSVRQAKLAV 206
Query: 191 R-DADKALEHYKRADA 205
+ D Y +A
Sbjct: 207 QMDVLDGRSWYILGNA 222
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB:
1fxk_B
Length = 107
Score = 27.2 bits (60), Expect = 6.1
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 107 KHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAEHL---- 162
+++Q L+ Q A+ ++ + E+ KALE RA D E+ ++
Sbjct: 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIR 60
Query: 163 QDGDHLMKILRNQVDALERALKNYEK 188
D L + L+ +++ L+ K E+
Sbjct: 61 VAKDELTEELQEKLETLQLREKTIER 86
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 29.0 bits (65), Expect = 6.3
Identities = 12/124 (9%), Positives = 26/124 (20%), Gaps = 50/124 (40%)
Query: 126 LERARKNYDKAYR--------------------ESDKALEHYKRADADLELSRAEHLQDG 165
+ A + +Y + A+ H++ A L L + +
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA---LLLVKKTQSNEK 513
Query: 166 DH------LMKILRNQVDALERALKNYEKAFR--------------------DADKALEH 199
L R + A+ + A+ H
Sbjct: 514 PWAATWANLGHAYRKLKM-YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572
Query: 200 YKRA 203
+
Sbjct: 573 LHES 576
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 28.4 bits (62), Expect = 6.9
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 390 SQRKKKLQQRIEEIQHSIQQESAAREGLIKMKGVYEDNPNLGDPHMIEGQLSETDSRLEK 449
+ L+ + + I +S ++ V D N IE Q+ + + LEK
Sbjct: 134 EDTVRLLKSQTRSLLQKIDMDSKMKKMAELQLSVVSDPKN---RKAIENQIRQWEQNLEK 190
Query: 450 LRGELQKYQTYMEESEANSPAGMRK 474
+L + + Y+ + +
Sbjct: 191 FHMDLFRMRCYLASLQGGELPNPKS 215
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 27.2 bits (60), Expect = 8.5
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 103 EERKKHLQDGARMMNLLENQVIALERARKNYDKAYRESDKALEHYKRADADLELSRAE-- 160
+ +Q + + Q+ + + ++ E+ KAL+ + D + +
Sbjct: 2 QNIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGT 61
Query: 161 --HLQDGDHLMKILRNQVDALERALKNYEK 188
D + L+ +++ LE L E+
Sbjct: 62 LIVKTTKDKAVAELKEKIETLEVRLNALER 91
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A
{Thermococcus SP}
Length = 526
Score = 28.3 bits (62), Expect = 8.6
Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 137 YRESDKALEHYKRADADLELSRAEHLQDGDHLMKILRNQVDALERALKNYE-----KAFR 191
D+ +++ + + ++ L+ ++D E+ L + A
Sbjct: 389 TVMKDQDVKNLIDLYKKKDREKINAT--TKAMINSLQEKIDEAEQLLAKAKGMNNENAIE 446
Query: 192 DADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDTKTEY 235
A A++ YK A DL+ + + + Q + + + +Y
Sbjct: 447 YAQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 28.2 bits (62), Expect = 9.1
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Query: 172 LRNQVDALERALKNYEKAFRDADKALEHYKRADADLELSRAEVEKQRINMAIKSQHCEDT 231
+ + L +N +A + L Y + + N +
Sbjct: 213 TQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL-ANQITLALMQGLD 271
Query: 232 KTEYANQLQRAN 243
+ NQL + +
Sbjct: 272 TEDLTNQLVKLD 283
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 28.0 bits (63), Expect = 9.4
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 43/109 (39%)
Query: 125 ALERARKNYDK------------AYR---ESDKALEHYKRADADLELSRAEHLQDGDHLM 169
L AR+ D+ Y + +KA++++ + L +++ + D
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH---LAIAQ----ELKDR-- 299
Query: 170 KILRNQVDALE------RALKNYEKAFRDADKALEHYKRADADLELSRA 212
+ A AL N+ D+A+ ++ LE+SR
Sbjct: 300 ---IGEGRACWSLGNAYTALGNH-------DQAMHFAEKH---LEISRE 335
Score = 28.0 bits (63), Expect = 9.5
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 20/73 (27%)
Query: 141 DKALEHYKRADADLELSRAEHLQDGDH--LMKILRNQVDALERALKNYEKAFRDADKALE 198
+ A E+YK+ L L+R Q D + + + L++YE KA++
Sbjct: 240 ETASEYYKKT---LLLAR----QLKDRAVEAQSCYSLGNTY-TLLQDYE-------KAID 284
Query: 199 HYKRADADLELSR 211
++ + L +++
Sbjct: 285 YHLKH---LAIAQ 294
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis,
amino-acid biosynthesis, homoserine transacetylase,
homoserine transsuccinylase; 2.00A {Bacillus cereus}
PDB: 2ghr_A
Length = 301
Score = 28.2 bits (62), Expect = 9.5
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 17 IDFLEKYGHFIRDRCAIEMEYAGKLRRLVKNYQPKKEEEDYQY 59
L++ F+ + E + L+ + N P K+E + Q
Sbjct: 12 RKVLQEENIFVMTKERAETQDIRALKIAILNLMPTKQETEAQL 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.363
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,869,585
Number of extensions: 619312
Number of successful extensions: 2102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1718
Number of HSP's successfully gapped: 463
Length of query: 649
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 549
Effective length of database: 3,909,693
Effective search space: 2146421457
Effective search space used: 2146421457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (26.8 bits)