Query psy10869
Match_columns 163
No_of_seqs 204 out of 1116
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 20:30:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07294 PX_SNX12 The phosphoin 100.0 1.5E-36 3.2E-41 216.9 14.8 131 28-158 2-132 (132)
2 KOG2527|consensus 100.0 2.7E-36 5.9E-41 210.3 8.2 142 14-163 2-144 (144)
3 cd07293 PX_SNX3 The phosphoino 100.0 3.4E-34 7.3E-39 202.9 13.8 121 29-149 1-121 (123)
4 cd06894 PX_SNX3_like The phosp 100.0 6.9E-34 1.5E-38 201.4 13.6 122 29-150 1-122 (123)
5 cd07282 PX_SNX2 The phosphoino 100.0 6.1E-33 1.3E-37 196.9 13.3 119 30-148 1-123 (124)
6 cd07284 PX_SNX7 The phosphoino 100.0 2.1E-32 4.5E-37 191.8 12.7 115 30-149 1-116 (116)
7 cd07283 PX_SNX30 The phosphoin 100.0 3.6E-32 7.8E-37 190.7 12.7 114 30-148 1-115 (116)
8 cd07286 PX_SNX18 The phosphoin 100.0 2.6E-32 5.7E-37 193.2 10.7 115 31-161 2-120 (127)
9 cd07295 PX_Grd19 The phosphoin 100.0 1.3E-31 2.7E-36 188.1 13.0 114 29-151 1-116 (116)
10 cd06861 PX_Vps5p The phosphoin 100.0 1.5E-31 3.3E-36 186.8 13.1 111 30-149 1-112 (112)
11 cd07281 PX_SNX1 The phosphoino 100.0 1.9E-31 4.1E-36 189.4 13.3 119 30-148 1-123 (124)
12 cd06860 PX_SNX7_30_like The ph 100.0 2.3E-31 4.9E-36 187.0 12.9 114 30-148 1-115 (116)
13 cd06865 PX_SNX_like The phosph 100.0 1.7E-30 3.8E-35 183.5 12.5 113 31-149 1-120 (120)
14 cd06863 PX_Atg24p The phosphoi 100.0 2.8E-30 6.1E-35 182.0 13.1 115 30-148 1-117 (118)
15 cd07285 PX_SNX9 The phosphoino 100.0 6.5E-31 1.4E-35 185.7 9.8 115 30-161 1-119 (126)
16 cd06898 PX_SNX10 The phosphoin 100.0 8.6E-30 1.9E-34 178.1 12.6 109 31-148 1-112 (113)
17 cd06859 PX_SNX1_2_like The pho 100.0 9.2E-30 2E-34 178.2 11.8 113 30-149 1-114 (114)
18 cd06864 PX_SNX4 The phosphoino 100.0 2.2E-29 4.8E-34 179.7 12.4 119 30-149 1-129 (129)
19 cd07301 PX_SNX21 The phosphoin 100.0 7.3E-29 1.6E-33 173.1 12.5 109 30-148 1-111 (112)
20 cd06862 PX_SNX9_18_like The ph 100.0 3E-29 6.4E-34 178.0 10.3 113 31-160 2-117 (125)
21 cd06872 PX_SNX19_like_plant Th 100.0 1.2E-28 2.7E-33 170.6 12.0 106 30-148 1-106 (107)
22 cd06867 PX_SNX41_42 The phosph 100.0 1.9E-28 4.2E-33 171.1 11.3 109 32-149 2-112 (112)
23 cd06868 PX_HS1BP3 The phosphoi 100.0 3.7E-28 8.1E-33 171.3 11.4 108 30-148 2-119 (120)
24 cd07280 PX_YPT35 The phosphoin 100.0 1.3E-27 2.9E-32 168.8 12.6 111 31-148 4-120 (120)
25 cd06891 PX_Vps17p The phosphoi 100.0 1.7E-27 3.7E-32 170.7 13.2 114 25-149 25-140 (140)
26 cd06873 PX_SNX13 The phosphoin 99.9 5.1E-27 1.1E-31 165.7 13.2 110 30-148 5-119 (120)
27 cd07279 PX_SNX20_21_like The p 99.9 4.1E-27 8.8E-32 164.4 12.2 109 30-148 1-111 (112)
28 cd07276 PX_SNX16 The phosphoin 99.9 4.7E-27 1E-31 163.6 11.9 108 29-149 3-110 (110)
29 cd06877 PX_SNX14 The phosphoin 99.9 1E-26 2.2E-31 163.9 13.3 111 30-149 3-119 (119)
30 cd06881 PX_SNX15_like The phos 99.9 9.5E-27 2E-31 163.7 11.9 107 30-148 3-116 (117)
31 cd07288 PX_SNX15 The phosphoin 99.9 7.2E-27 1.6E-31 164.2 11.1 106 31-148 4-117 (118)
32 cd07300 PX_SNX20 The phosphoin 99.9 1.3E-26 2.9E-31 162.1 12.4 110 31-150 2-113 (114)
33 cd07287 PX_RPK118_like The pho 99.9 2.3E-26 5E-31 161.5 11.9 106 31-148 4-117 (118)
34 cd06870 PX_CISK The phosphoino 99.9 2.4E-26 5.2E-31 159.8 11.6 105 32-149 5-109 (109)
35 cd07291 PX_SNX5 The phosphoino 99.9 1.5E-26 3.3E-31 164.0 10.6 117 29-149 2-141 (141)
36 cd06875 PX_IRAS The phosphoino 99.9 4.5E-26 9.7E-31 160.0 12.8 108 28-153 2-109 (116)
37 cd06866 PX_SNX8_Mvp1p_like The 99.9 3.8E-26 8.2E-31 157.7 11.9 95 37-148 9-104 (105)
38 cd06893 PX_SNX19 The phosphoin 99.9 1.9E-26 4.2E-31 165.0 10.5 114 30-148 4-131 (132)
39 cd06886 PX_SNX27 The phosphoin 99.9 4.7E-26 1E-30 157.4 12.0 102 29-148 3-105 (106)
40 cd07292 PX_SNX6 The phosphoino 99.9 3.5E-26 7.5E-31 161.9 11.4 117 29-149 2-141 (141)
41 cd06897 PX_SNARE The phosphoin 99.9 5.6E-26 1.2E-30 157.6 11.9 104 30-148 1-107 (108)
42 cd06882 PX_p40phox The phospho 99.9 3.1E-25 6.7E-30 157.1 12.4 109 29-152 3-121 (123)
43 cd06880 PX_SNX22 The phosphoin 99.9 4.2E-25 9.2E-30 153.7 12.6 104 30-152 1-105 (110)
44 cd06878 PX_SNX25 The phosphoin 99.9 5E-25 1.1E-29 156.9 13.0 112 28-149 7-127 (127)
45 cd06876 PX_MDM1p The phosphoin 99.9 2.3E-24 4.9E-29 154.8 12.9 111 30-147 20-132 (133)
46 cd06871 PX_MONaKA The phosphoi 99.9 2.2E-24 4.8E-29 152.2 12.5 110 30-156 8-117 (120)
47 cd07277 PX_RUN The phosphoinos 99.9 1.3E-24 2.8E-29 152.7 11.1 105 30-149 1-106 (118)
48 cd06892 PX_SNX5_like The phosp 99.9 1.2E-24 2.6E-29 155.7 10.8 116 30-149 3-141 (141)
49 cd06885 PX_SNX17_31 The phosph 99.9 1.8E-24 3.8E-29 149.1 10.2 99 32-148 2-102 (104)
50 cd06879 PX_UP1_plant The phosp 99.9 2.6E-23 5.6E-28 148.5 11.5 97 44-149 41-138 (138)
51 cd06883 PX_PI3K_C2 The phospho 99.9 7.8E-23 1.7E-27 142.1 11.3 105 32-148 2-108 (109)
52 smart00312 PX PhoX homologous 99.9 1.4E-22 3E-27 139.1 10.6 101 36-147 3-105 (105)
53 cd06093 PX_domain The Phox Hom 99.9 7.2E-22 1.6E-26 135.0 12.4 104 32-148 2-106 (106)
54 cd06874 PX_KIF16B_SNX23 The ph 99.9 4.9E-22 1.1E-26 141.3 11.8 98 30-141 1-100 (127)
55 cd06869 PX_UP2_fungi The phosp 99.9 6E-22 1.3E-26 139.4 11.4 89 44-149 30-119 (119)
56 cd06884 PX_PI3K_C2_68D The pho 99.9 1.9E-21 4.1E-26 135.3 12.3 107 30-148 2-110 (111)
57 PF00787 PX: PX domain; Inter 99.9 2.2E-21 4.7E-26 134.1 10.0 110 29-149 3-113 (113)
58 cd06895 PX_PLD The phosphoinos 99.9 5.2E-21 1.1E-25 138.0 11.7 105 29-148 3-139 (140)
59 cd06887 PX_p47phox The phospho 99.8 2.1E-20 4.6E-25 131.0 12.0 104 30-149 2-116 (118)
60 cd06888 PX_FISH The phosphoino 99.8 2.4E-20 5.1E-25 131.1 12.1 106 30-148 2-118 (119)
61 KOG2528|consensus 99.8 8.7E-21 1.9E-25 155.5 8.2 120 27-162 183-305 (490)
62 KOG2273|consensus 99.8 1.7E-19 3.6E-24 154.5 13.0 117 30-150 110-228 (503)
63 cd07289 PX_PI3K_C2_alpha The p 99.8 3E-19 6.6E-24 123.2 11.5 105 32-148 2-108 (109)
64 cd07296 PX_PLD1 The phosphoino 99.8 2.6E-19 5.5E-24 127.4 11.4 114 29-148 3-134 (135)
65 cd07290 PX_PI3K_C2_beta The ph 99.8 6.2E-19 1.3E-23 121.7 11.6 104 32-148 2-108 (109)
66 cd06890 PX_Bem1p The phosphoin 99.8 1.6E-18 3.4E-23 121.0 11.4 100 31-148 2-111 (112)
67 cd06889 PX_NoxO1 The phosphoin 99.7 2.4E-15 5.2E-20 105.5 12.2 105 29-148 5-120 (121)
68 cd07297 PX_PLD2 The phosphoino 99.6 5E-15 1.1E-19 103.6 10.3 114 29-148 3-129 (130)
69 COG5391 Phox homology (PX) dom 99.6 6E-15 1.3E-19 126.1 8.4 119 18-140 119-244 (524)
70 KOG1259|consensus 99.6 7E-15 1.5E-19 117.6 6.8 98 44-155 24-121 (490)
71 cd06896 PX_PI3K_C2_gamma The p 99.3 9.8E-12 2.1E-16 83.5 9.2 85 48-147 13-99 (101)
72 KOG3784|consensus 99.2 4.4E-11 9.6E-16 97.7 7.4 101 32-151 3-104 (407)
73 KOG4773|consensus 98.8 9E-09 2E-13 83.0 4.9 128 5-152 2-140 (386)
74 KOG0905|consensus 98.6 2.2E-07 4.7E-12 84.8 9.3 113 26-150 1372-1486(1639)
75 KOG2101|consensus 98.5 3.7E-07 8E-12 75.5 8.6 90 43-140 131-229 (362)
76 KOG1660|consensus 98.4 7.6E-07 1.6E-11 72.1 7.3 114 30-149 26-163 (399)
77 cd07298 PX_RICS The phosphoino 98.3 8.8E-06 1.9E-10 55.8 9.3 88 29-134 6-100 (115)
78 cd07278 PX_RICS_like The phosp 98.3 9.7E-06 2.1E-10 55.4 9.4 88 29-134 6-99 (114)
79 cd07299 PX_TCGAP The phosphoin 98.2 1.3E-05 2.8E-10 54.6 8.3 86 30-133 7-97 (113)
80 PLN02866 phospholipase D 93.7 0.23 5E-06 46.4 6.9 113 31-153 17-175 (1068)
81 PF15050 SCIMP: SCIMP protein 70.5 6.1 0.00013 27.8 3.1 38 63-100 38-79 (133)
82 COG5391 Phox homology (PX) dom 64.4 6.4 0.00014 34.6 2.8 104 37-149 30-134 (524)
83 PF10406 TAF8_C: Transcription 48.6 29 0.00064 20.4 3.1 17 88-104 5-21 (51)
84 KOG1329|consensus 45.6 19 0.00042 33.4 2.8 96 44-153 63-168 (887)
85 PF10908 DUF2778: Protein of u 43.7 27 0.00059 24.5 2.8 27 65-91 92-118 (120)
86 PF00140 Sigma70_r1_2: Sigma-7 41.6 19 0.0004 19.6 1.4 21 122-142 3-23 (37)
87 PF14980 TIP39: TIP39 peptide 33.8 49 0.0011 19.3 2.3 15 118-132 34-48 (51)
88 PF09425 CCT_2: Divergent CCT 30.9 43 0.00093 17.1 1.6 11 119-129 4-14 (27)
89 cd08049 TAF8 TATA Binding Prot 29.0 95 0.0021 18.3 3.1 17 88-104 5-21 (54)
90 PF11324 DUF3126: Protein of u 27.4 58 0.0013 20.2 2.0 16 121-136 3-18 (63)
91 KOG3540|consensus 23.9 72 0.0016 28.0 2.6 33 117-149 326-360 (615)
92 PRK09750 hypothetical protein; 23.6 73 0.0016 19.5 1.9 33 49-84 3-35 (64)
93 PRK15321 putative type III sec 21.0 91 0.002 21.2 2.1 22 122-143 18-39 (120)
No 1
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=100.00 E-value=1.5e-36 Score=216.92 Aligned_cols=131 Identities=81% Similarity=1.363 Sum_probs=122.1
Q ss_pred CceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCC
Q psy10869 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
++++|.|+||++.++|+++|++|.|+++++.+.|....|.|+||||||.||++.|.+.+++.+||||+|.+....++.|.
T Consensus 2 ~~~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~g~~iPpLP~K~~~~~~~~~~~ 81 (132)
T cd07294 2 NFLEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGD 81 (132)
T ss_pred ceEEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHcCCCccCCCCCCceecccccccc
Confidence 57899999999999999999999999999988888899999999999999999999888899999999998665544555
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCCCC
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYVPG 158 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g 158 (163)
.+++++++||+|+++||.||+.|++||.|++++.|+.||+.++++.+|.+|
T Consensus 82 ~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~~~~~~~ 132 (132)
T cd07294 82 EGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETIDRNYVPG 132 (132)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcCcccCCC
Confidence 578999999999999999999999999999999999999999999999998
No 2
>KOG2527|consensus
Probab=100.00 E-value=2.7e-36 Score=210.29 Aligned_cols=142 Identities=68% Similarity=1.145 Sum_probs=132.6
Q ss_pred ccccchhhhhcCCCCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC-CcccCC
Q psy10869 14 VKKQTLDDAYAAPANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS-KIVVPP 92 (163)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~-~~~lP~ 92 (163)
++.|.++++|++|.++|+|+|.+|.+.++|.+.||.|.|.+++++|.|..+..+|.||||||+|||..|+... .+.+|+
T Consensus 2 ~k~q~~~e~y~~p~nfLeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~ 81 (144)
T KOG2527|consen 2 SKPQTLEEAYAPPENFLEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPE 81 (144)
T ss_pred CcccchhhhhcCccceEEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 4677899999999999999999999999999999999999999999999999999999999999999999986 588999
Q ss_pred CCCCcccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCCCCCCcCC
Q psy10869 93 LPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYVPGKIRNT 163 (163)
Q Consensus 93 lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~~~~~ 163 (163)
||+|.++.+++ ..+|||+||++|+.||+.++.||.+.++..|+.||+...++.+|++||.|++
T Consensus 82 LPgK~~~~~~~--------fre~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~~~~~~~~~~v~~~ 144 (144)
T KOG2527|consen 82 LPGKALFRQLP--------FREFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSELIDKNYIPSKVRTA 144 (144)
T ss_pred CCcHHHHhcCc--------hHHHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhhhccccCCccccCC
Confidence 99999987543 2399999999999999999999999999999999999999999999999864
No 3
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=100.00 E-value=3.4e-34 Score=202.88 Aligned_cols=121 Identities=74% Similarity=1.306 Sum_probs=112.6
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCC
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
+++|.|.||++.++|.++|++|.|+++++.|.|....|.|+||||||.+||+.|++.+++.+|+||+|.++..+.+.|..
T Consensus 1 ~~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~ 80 (123)
T cd07293 1 FLEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKALFRQLPFRGDD 80 (123)
T ss_pred CeEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCCCCchhhhccccccc
Confidence 47999999999999999999999999999988888999999999999999999998889999999999998755555556
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
++++++++|+||++||.||+.|++||.|++++.|+.||+.+
T Consensus 81 ~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 81 GIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 78999999999999999999999999999999999999875
No 4
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=100.00 E-value=6.9e-34 Score=201.43 Aligned_cols=122 Identities=89% Similarity=1.425 Sum_probs=111.8
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCC
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
+|+|+|.||+++++|+++|++|.|++.++.+.+....|.|+||||||.+||+.|.+.+++.+|+||+|.++..+++.+..
T Consensus 1 ~~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~ 80 (123)
T cd06894 1 FLEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERDSKIVVPPLPGKALKRQLPFRGDD 80 (123)
T ss_pred CeEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHcCCCccCCCCCCceeccccccccc
Confidence 47999999999999999999999999999888888899999999999999999998888999999999987554444345
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCc
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPT 150 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~ 150 (163)
++++++|||+||++|+.||+.|++||.|++|+.|+.||+.++
T Consensus 81 ~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~~ 122 (123)
T cd06894 81 GIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEET 122 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCCC
Confidence 789999999999999999999999999999999999999875
No 5
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=100.00 E-value=6.1e-33 Score=196.86 Aligned_cols=119 Identities=33% Similarity=0.545 Sum_probs=107.2
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC---CcccCCCCCCcccccCCc-C
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS---KIVVPPLPGKAWKRQMPF-R 105 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~---~~~lP~lP~K~~~~~~~~-~ 105 (163)
++|+|.||+++++|.+.|++|.|+++++.+.+....|.|+|||+||.+||+.|++.+ ++.+||||+|.+++..++ .
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 579999999999999999999999998888888999999999999999999999853 678999999998875444 3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 106 GDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 106 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
|..++++++|||+||.+||.||++|++||.|++|+.|+.||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 3445679999999999999999999999999999999999985
No 6
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=100.00 E-value=2.1e-32 Score=191.81 Aligned_cols=115 Identities=38% Similarity=0.663 Sum_probs=105.1
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
+.|+|.||+++++|+++|++|+|+++++.+.+....|.|.||||||.|||+.|.+. +++.+||||+|.++..+ .
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~ 75 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGM-----V 75 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhc-----c
Confidence 47999999999999999999999999999999999999999999999999999875 78889999999976421 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
+.++++|+|+|+++||.||++|+.||.|+.++.|+.||+.+
T Consensus 76 ~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~~ 116 (116)
T cd07284 76 ERFNEDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQ 116 (116)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcCC
Confidence 56799999999999999999999999999999999999853
No 7
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=100.00 E-value=3.6e-32 Score=190.70 Aligned_cols=114 Identities=39% Similarity=0.680 Sum_probs=104.2
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
+.|+|.||+++++|+++|++|.|+++++.+.|....|.|.||||||.|||+.|... +++.+||||+|.++.. ..
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~-----~~ 75 (116)
T cd07283 1 LFVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKG-----VV 75 (116)
T ss_pred CEEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccc-----cc
Confidence 46999999999999999999999999999999999999999999999999999875 6789999999987532 13
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
++++++|||+||++||.||+.|++||.|+.++.|+.||+.
T Consensus 76 ~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 76 DRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 5679999999999999999999999999999999999985
No 8
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.98 E-value=2.6e-32 Score=193.24 Aligned_cols=115 Identities=32% Similarity=0.593 Sum_probs=104.9
Q ss_pred EEEecCcEEec--CCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCC
Q psy10869 31 EIDVVNPITHG--VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 31 ~v~V~~~~~~~--~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
.|+|+||++.+ +|+++|++|+|++. ...|.|.||||||.+||+.|.+. +++.+||||+|..+
T Consensus 2 ~~~v~dp~k~~~~~G~~~Yv~Y~I~~~-------~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~-------- 66 (127)
T cd07286 2 QCTIDDPTKQTKFKGMKSYISYKLVPS-------HTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQAT-------- 66 (127)
T ss_pred eEEeCCCcccCCCCCCcCEEEEEEEEe-------cCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcC--------
Confidence 58999999986 88999999999864 34699999999999999999875 78889999999985
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC-cccccCCCCCCc
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP-TIDKNYVPGKIR 161 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~-~~~~~~~~g~~~ 161 (163)
++++++||++|+++||.||+.|+.||.|+.|+.|+.||+.+ +.+.+|+++|++
T Consensus 67 -g~f~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~~~~~~~~~~~~~~ 120 (127)
T cd07286 67 -GRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCPSTDEKAWKQGKRK 120 (127)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHhcCCcchhHHHhhcchH
Confidence 56899999999999999999999999999999999999987 589999999875
No 9
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.98 E-value=1.3e-31 Score=188.07 Aligned_cols=114 Identities=54% Similarity=1.012 Sum_probs=105.1
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCC
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
++.|.|.||+++++|++.|++|.|.++++.+.|....|.|+||||||.+||+.|.+. +++.+|+||+|.++
T Consensus 1 ~~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~-------- 72 (116)
T cd07295 1 FLEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFT-------- 72 (116)
T ss_pred CeEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccc--------
Confidence 478999999999999999999999999998888889999999999999999999876 56789999999975
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCcc-CChhhhcccCCCcc
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQ-NERCLHMFLQEPTI 151 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~-~s~~l~~FL~~~~~ 151 (163)
+++++++||+||.+||.||+.|++||.|+ +++.+..||+.+++
T Consensus 73 -~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~~ 116 (116)
T cd07295 73 -NRFSDEVIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPKF 116 (116)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCCC
Confidence 45799999999999999999999999998 58999999998764
No 10
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.98 E-value=1.5e-31 Score=186.81 Aligned_cols=111 Identities=38% Similarity=0.684 Sum_probs=102.8
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
+.|.|.||++++++.++|++|.|+++++.+.+....|.|+|||+||.+||+.|... +++.+|+||+|.++
T Consensus 1 ~~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~--------- 71 (112)
T cd06861 1 FEITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSV--------- 71 (112)
T ss_pred CEEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccc---------
Confidence 46899999999999899999999999988878889999999999999999999875 77889999999985
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
++++++++|+||.+||.||+.|++||.|++|++|+.||+.+
T Consensus 72 ~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 72 GRFDDNFVEQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 46799999999999999999999999999999999999863
No 11
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.97 E-value=1.9e-31 Score=189.41 Aligned_cols=119 Identities=30% Similarity=0.543 Sum_probs=105.7
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC---CcccCCCCCCcccccCCc-C
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS---KIVVPPLPGKAWKRQMPF-R 105 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~---~~~lP~lP~K~~~~~~~~-~ 105 (163)
|+|.|.+++++++|+++|++|.|+++++.+.+....|.|.||||||.+||+.|.+.+ ++.+|++|+|.+++++++ .
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~ 80 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 80 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhc
Confidence 579999999999999999999999999888888899999999999999999999863 467999999998765433 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 106 GDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 106 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
|..++.+++|||+||.+||.||+.|++||.|++++.|+.||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 81 GKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 3334579999999999999999999999999999999999985
No 12
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.97 E-value=2.3e-31 Score=186.96 Aligned_cols=114 Identities=37% Similarity=0.623 Sum_probs=103.5
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
+.|.|.||++++++.++|++|.|+++++.+.+....|.|+|||+||.+||+.|.+. +++.+||||+|..+.. ..
T Consensus 1 ~~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~-----~~ 75 (116)
T cd06860 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKG-----LL 75 (116)
T ss_pred CEEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhh-----hc
Confidence 47999999999999999999999999988888889999999999999999999875 6788999999997521 13
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
++++++|||+||++||.||+.|+.||.|++|+.|+.||+.
T Consensus 76 ~~~~~~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 76 DRFSPEFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 5689999999999999999999999999999999999985
No 13
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.97 E-value=1.7e-30 Score=183.47 Aligned_cols=113 Identities=32% Similarity=0.536 Sum_probs=101.0
Q ss_pred EEEecCcEEecCC------CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCC
Q psy10869 31 EIDVVNPITHGVA------KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMP 103 (163)
Q Consensus 31 ~v~V~~~~~~~~g------~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~ 103 (163)
+|+|.||++++++ +++|++|.|++.++.+++....|.|+|||+||.+||+.|.+. +++.+|+||+|.++..
T Consensus 1 ~i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~-- 78 (120)
T cd06865 1 KITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVES-- 78 (120)
T ss_pred CeEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccc--
Confidence 4899999998764 489999999999887778889999999999999999999875 7789999999998742
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 104 FRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 104 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
..+++++|||+||++||.||+.|++||.|++|++|+.||+.+
T Consensus 79 ----~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06865 79 ----QVMQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTLQ 120 (120)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccCC
Confidence 124699999999999999999999999999999999999863
No 14
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.97 E-value=2.8e-30 Score=181.96 Aligned_cols=115 Identities=39% Similarity=0.640 Sum_probs=102.4
Q ss_pred eEEEecCcEEec-CCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCC
Q psy10869 30 LEIDVVNPITHG-VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 30 l~v~V~~~~~~~-~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
++|.|.||++++ +|+++|++|.|+++++.+.+....|.|+|||+||.+||+.|.+. +++.+|+||+|..+..+ .
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~----~ 76 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYI----T 76 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccc----c
Confidence 579999999986 56899999999999988878888999999999999999999875 67889999999976321 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
.++++++++++|+++||.||+.|++||.|++|+.|..||+.
T Consensus 77 ~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 77 GDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 24679999999999999999999999999999999999975
No 15
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.97 E-value=6.5e-31 Score=185.75 Aligned_cols=115 Identities=29% Similarity=0.558 Sum_probs=102.3
Q ss_pred eEEEecCcEEec--CCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC--cccCCCCCCcccccCCcC
Q psy10869 30 LEIDVVNPITHG--VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK--IVVPPLPGKAWKRQMPFR 105 (163)
Q Consensus 30 l~v~V~~~~~~~--~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~--~~lP~lP~K~~~~~~~~~ 105 (163)
+.|.|.||++.+ +|+++|++|.|..++ ..+.|.||||||.+|++.|...++ +.+||||+|..+
T Consensus 1 ~~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~-------~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~------ 67 (126)
T cd07285 1 FDCVVADPRKGSKMYGLKSYIEYQLTPTN-------TNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVT------ 67 (126)
T ss_pred CEEEEcCcccccCCCCCcCeEEEEEEecc-------CCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCcccc------
Confidence 368999999987 678999999999764 368999999999999999988754 459999999975
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCCCCCCc
Q psy10869 106 GDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYVPGKIR 161 (163)
Q Consensus 106 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~~~ 161 (163)
++++++||++|+.+||.||+.|++||.|+.++.|+.||+.+ .+..|+.||++
T Consensus 68 ---g~f~~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~-~~~~w~~~~~~ 119 (126)
T cd07285 68 ---GRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFR-DEKEWKTGKRK 119 (126)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCC-CHHHHHhhChH
Confidence 56899999999999999999999999999999999999985 57889888875
No 16
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.97 E-value=8.6e-30 Score=178.10 Aligned_cols=109 Identities=44% Similarity=0.760 Sum_probs=98.3
Q ss_pred EEEecCcEEecC-CCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC-CcccCCCCCCcccccCCcCCCC
Q psy10869 31 EIDVVNPITHGV-AKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS-KIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 31 ~v~V~~~~~~~~-g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~-~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
.|.|.||+++++ ++++||+|.|+++++.+.+....|.|+||||||.+||+.|.+.+ ++.+|+||+|.+++.
T Consensus 1 ~v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~------- 73 (113)
T cd06898 1 SVEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGR------- 73 (113)
T ss_pred CeEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccC-------
Confidence 378999999877 68899999999998877777789999999999999999999874 458999999998753
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 109 GIFE-EEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 109 ~~~~-~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
++ ++|||+||++|+.||+.|++||.|.+++.|+.||+.
T Consensus 74 --~~~~~fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 74 --FNNEGFIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 34 999999999999999999999999999999999975
No 17
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.97 E-value=9.2e-30 Score=178.22 Aligned_cols=113 Identities=40% Similarity=0.674 Sum_probs=100.9
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
+.|.|+||++.++|.++|++|.|++.++.+++....|.|+|||+||.+||+.|.+. ++..+|+||+|.+++.+
T Consensus 1 ~~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~------ 74 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRF------ 74 (114)
T ss_pred CEEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCcc------
Confidence 47999999999999999999999999887777788999999999999999999886 67889999999987431
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
..+.++||+|+.+||.||+.|++||.|+++++|+.||+.+
T Consensus 75 -~~~~~~ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~~ 114 (114)
T cd06859 75 -KVKFEFIEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114 (114)
T ss_pred -CccHHHHHHHHHHHHHHHHHHhcChhhccCcHHHhhcCCC
Confidence 1234699999999999999999999999999999999753
No 18
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.96 E-value=2.2e-29 Score=179.73 Aligned_cols=119 Identities=34% Similarity=0.501 Sum_probs=100.1
Q ss_pred eEEEecCcEEecCCC-----cCeeEEEEEEEEcCCCC----CCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCccc
Q psy10869 30 LEIDVVNPITHGVAK-----KRYTDYEVRMKTNLPVF----KTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWK 99 (163)
Q Consensus 30 l~v~V~~~~~~~~g~-----~~~~~Y~I~v~~~~~~~----~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~ 99 (163)
++|.|++++++++|+ ++|++|.|++.+..+.+ ....|.|+||||||.+||+.|.+. +++.+|+||+|..+
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 479999999987763 49999999999875532 367899999999999999999875 66789999999975
Q ss_pred ccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 100 RQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
..+. ....+++++++||+||++||.||+.|++||.|++|++|..||+.+
T Consensus 81 ~~~~-~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~~ 129 (129)
T cd06864 81 FMWQ-KLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTHE 129 (129)
T ss_pred cccc-cccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCCC
Confidence 3221 112357899999999999999999999999999999999999853
No 19
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.96 E-value=7.3e-29 Score=173.10 Aligned_cols=109 Identities=23% Similarity=0.339 Sum_probs=97.0
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCccc--CCCCCCcccccCCcCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVV--PPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~l--P~lP~K~~~~~~~~~~~ 107 (163)
+.|.|+|++++++|+++|++|.|++... ..+....|.|+||||||.+||+.|++.++..+ ++||+|.++
T Consensus 1 ~~~~v~~~~~~~~~~~~yv~Y~I~v~~~-~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~-------- 71 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYVLYTIYVIQT-GQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLR-------- 71 (112)
T ss_pred CEEEECCCeEeccCCcCEEEEEEEEEec-CCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCccc--------
Confidence 4689999999999999999999999743 34567789999999999999999998766544 489999986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
+++++++||+|+.+|+.||+.|+++|.|+.++.|++||..
T Consensus 72 -~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 72 -KNFTAETIAKRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 4689999999999999999999999999999999999975
No 20
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.96 E-value=3e-29 Score=177.99 Aligned_cols=113 Identities=35% Similarity=0.664 Sum_probs=100.7
Q ss_pred EEEecCcEEec--CCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCC
Q psy10869 31 EIDVVNPITHG--VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 31 ~v~V~~~~~~~--~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
+|+|+||++.+ .|+++||+|.|.+.+ ..|.|.||||||.+||+.|.+. +++.+|+||+|.++
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~-------- 66 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTH-------TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVT-------- 66 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEec-------CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccc--------
Confidence 69999999986 578999999999863 4799999999999999999886 66789999999975
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCCCCCC
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYVPGKI 160 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~~ 160 (163)
+++++++|++|+.+|+.||+.|++||.|++|+.|+.||+.++ +..|..|++
T Consensus 67 -~~~~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~-~~~~~~~~~ 117 (125)
T cd06862 67 -GRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTD-EKDWKSGKR 117 (125)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCcc-HHHHHHhhH
Confidence 457999999999999999999999999999999999999884 677776653
No 21
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.96 E-value=1.2e-28 Score=170.59 Aligned_cols=106 Identities=24% Similarity=0.350 Sum_probs=95.3
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDDG 109 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~~ 109 (163)
++|.|.+.+..++|+++|++|.|.|.++ ....|.|.||||||.+||+.|++.++. .|+||+|.+++ +
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~----~~~~w~v~RRYsdF~~L~~~L~~~~~~-~~~lP~K~~~~--------~ 67 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDN----ENETWVVKRRFRNFETLHRRLKEVPKY-NLELPPKRFLS--------S 67 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEEC----CCceEEEEehHHHHHHHHHHHHhccCC-CCCCCCccccC--------C
Confidence 4789999999999999999999999865 257899999999999999999986544 67899999863 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 110 IFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 110 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
+.++++||+|+.+||.||+.|+++|.+++|+.|++||..
T Consensus 68 ~~~~~fie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 68 SLDGAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 679999999999999999999999999999999999974
No 22
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.96 E-value=1.9e-28 Score=171.13 Aligned_cols=109 Identities=29% Similarity=0.547 Sum_probs=93.7
Q ss_pred EEecCcEEecCC-CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCC
Q psy10869 32 IDVVNPITHGVA-KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDG 109 (163)
Q Consensus 32 v~V~~~~~~~~g-~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~ 109 (163)
|.|+|+.+.++| +++|++|.|++.. |.|.||||||.+||+.|.+. +++.+|+||+|..+.........+
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~---------~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~ 72 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG---------SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKA 72 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee---------EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccc
Confidence 679999998887 6899999998752 89999999999999999886 677899999999765321111235
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 110 IFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 110 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
+.+.++||+||++||.||+.|++||.|++|+.|+.||+.+
T Consensus 73 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 73 KNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 7899999999999999999999999999999999999864
No 23
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.95 E-value=3.7e-28 Score=171.29 Aligned_cols=108 Identities=29% Similarity=0.383 Sum_probs=95.4
Q ss_pred eEEEecCcEEe-cCCCcCeeEEEEEEEEcCCCCCCC--------ceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCccc
Q psy10869 30 LEIDVVNPITH-GVAKKRYTDYEVRMKTNLPVFKTK--------DSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWK 99 (163)
Q Consensus 30 l~v~V~~~~~~-~~g~~~~~~Y~I~v~~~~~~~~~~--------~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~ 99 (163)
|+|.|++++.. +++.++|++|.|.+.++.+.|... .|.|.||||||.+||+.|.+. +++.+|+||+|.++
T Consensus 2 ~~v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 2 LDLTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred CceecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 67889988875 456889999999998877665543 699999999999999999876 66789999999985
Q ss_pred ccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 100 RQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
+ +++++++||.+||.||+.|++||.|++|+.|+.||..
T Consensus 82 ---------~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 82 ---------V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred ---------C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 2 8999999999999999999999999999999999975
No 24
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.95 E-value=1.3e-27 Score=168.77 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=96.7
Q ss_pred EEEecCcEEecCC--CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCc---ccCCCCCCcccccCCc
Q psy10869 31 EIDVVNPITHGVA--KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKI---VVPPLPGKAWKRQMPF 104 (163)
Q Consensus 31 ~v~V~~~~~~~~g--~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~---~lP~lP~K~~~~~~~~ 104 (163)
+|.|+++++.+.+ +++|++|.|++.++.+ ....|.|+||||||.+||+.|... +.. .+|+||+|.++...
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~--~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~-- 79 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDL--IGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDS-- 79 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCC--CCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccc--
Confidence 6899999998655 6999999999988753 257899999999999999999986 444 68999999987521
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 105 RGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 105 ~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
.++.++++||+|+++||.||+.|++||.+++|+.|+.||++
T Consensus 80 ---~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 120 (120)
T cd07280 80 ---RVNLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLLP 120 (120)
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhCC
Confidence 23689999999999999999999999999999999999974
No 25
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.95 E-value=1.7e-27 Score=170.75 Aligned_cols=114 Identities=25% Similarity=0.412 Sum_probs=103.1
Q ss_pred CCCCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCce-EEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccC
Q psy10869 25 APANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDS-NVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQM 102 (163)
Q Consensus 25 ~~~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~-~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~ 102 (163)
.+...|.|.|.++++.|+ ++..|.+.+++++|.|..+.+ .|+||||||.+|+++|... +++.+|+||+|...
T Consensus 25 ~~~~~l~i~Vtd~ek~G~---~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~--- 98 (140)
T cd06891 25 KPKYFLRVRVTGIERNKS---KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTS--- 98 (140)
T ss_pred CCCceEEEEEeCceecCC---CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCcccc---
Confidence 445669999999999876 699999999999999999988 7999999999999999875 78999999999964
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 103 PFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 103 ~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
.+..+.+++++|+.+||.||++|++||.|..++.|+.||+.+
T Consensus 99 -----~~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEsd 140 (140)
T cd06891 99 -----YGSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRFFIESD 140 (140)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhccC
Confidence 256789999999999999999999999999999999999753
No 26
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.95 E-value=5.1e-27 Score=165.74 Aligned_cols=110 Identities=24% Similarity=0.353 Sum_probs=97.7
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
|++.|+++++.+++++.|++|.|.|....+......|.|.||||||.+||+.|++. +...+|+||+|.++
T Consensus 5 ~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~--------- 75 (120)
T cd06873 5 LTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTF--------- 75 (120)
T ss_pred EEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCccc---------
Confidence 89999999999999999999999998754434467899999999999999999986 45668999999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCC----hhhhcccCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNE----RCLHMFLQE 148 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s----~~l~~FL~~ 148 (163)
++++.++|++|+.+||.||+.|+++|.++++ +.+..||++
T Consensus 76 ~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~ 119 (120)
T cd06873 76 NNLDRAFLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEP 119 (120)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCC
Confidence 4679999999999999999999999999999 577788875
No 27
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.95 E-value=4.1e-27 Score=164.42 Aligned_cols=109 Identities=27% Similarity=0.450 Sum_probs=95.7
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC-Ccc-cCCCCCCcccccCCcCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS-KIV-VPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~-~~~-lP~lP~K~~~~~~~~~~~ 107 (163)
+.+.|.++....+++++|++|.|+|.+.. .++...|.|+||||||.+||+.|.+.+ +.. .|+||+|.++
T Consensus 1 ~~~~i~~~~~~~~~~~~yv~Y~I~v~~~~-~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~-------- 71 (112)
T cd07279 1 LKFEIVSARTVKEGEKKYVVYQLAVVQTG-DPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLM-------- 71 (112)
T ss_pred CeEEeccCeEEcCCCeeEEEEEEEEEECC-CCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeec--------
Confidence 46789999999999999999999998653 234567999999999999999999874 433 5789999986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
+++++++|++|+.+||.||+.|++||.|++|+.|+.||+.
T Consensus 72 -~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 72 -GNFSSELIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 4689999999999999999999999999999999999975
No 28
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.95 E-value=4.7e-27 Score=163.60 Aligned_cols=108 Identities=25% Similarity=0.421 Sum_probs=94.9
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCC
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
.++|.|.+.+...+ .+.||+|.|+|.... +..|.|.||||||.+||+.|.+.++..+|+||+|.+++
T Consensus 3 ~~~~~i~~~~~~~~-~~~~~vY~I~v~~~~----~~~~~v~RRYsdF~~L~~~L~~~~~~~~~~lP~K~~~~-------- 69 (110)
T cd07276 3 PIRPPILGYEVMEE-RARFTVYKIRVENKV----GDSWFVFRRYTDFVRLNDKLKQMFPGFRLSLPPKRWFK-------- 69 (110)
T ss_pred CccceeeeEEEeec-CCCeEEEEEEEEECC----CCEEEEEEehHHHHHHHHHHHHHCCCCCCCCCCcceec--------
Confidence 45788888887765 378999999998752 47899999999999999999997665789999999864
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
+++++++|++|+.+||.||+.|++||.|++++.++.||..+
T Consensus 70 ~~~~~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 70 DNFDPDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 35899999999999999999999999999999999999864
No 29
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.95 E-value=1e-26 Score=163.89 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=94.5
Q ss_pred eEEEecCcEEecC--CCcCeeEEEEEEEEcC---CCCCCCceEEEeehhHHHHHHHHHHhcCC-cccCCCCCCcccccCC
Q psy10869 30 LEIDVVNPITHGV--AKKRYTDYEVRMKTNL---PVFKTKDSNVRRRYSDFEWLRNELERDSK-IVVPPLPGKAWKRQMP 103 (163)
Q Consensus 30 l~v~V~~~~~~~~--g~~~~~~Y~I~v~~~~---~~~~~~~~~V~RRYsdF~~L~~~L~~~~~-~~lP~lP~K~~~~~~~ 103 (163)
..|+|+..+...+ +++.|++|.|+|+... .......|.|.||||||.+||..|++.++ ...|+||+|.++
T Consensus 3 ~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~---- 78 (119)
T cd06877 3 WRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIF---- 78 (119)
T ss_pred ceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCccc----
Confidence 4678887777644 6789999999998631 12345789999999999999999998744 568999999986
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 104 FRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 104 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
++++.++||+||.+||.||+.|+++|.++.|+.|+.||+.+
T Consensus 79 -----~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 79 -----GPKSYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCCC
Confidence 45799999999999999999999999999999999999864
No 30
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.94 E-value=9.5e-27 Score=163.71 Aligned_cols=107 Identities=28% Similarity=0.484 Sum_probs=91.6
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCC--CCCCceEEEeehhHHHHHHHHHHhcC-----CcccCCCCCCcccccC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPV--FKTKDSNVRRRYSDFEWLRNELERDS-----KIVVPPLPGKAWKRQM 102 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~--~~~~~~~V~RRYsdF~~L~~~L~~~~-----~~~lP~lP~K~~~~~~ 102 (163)
..++|+|++..+ ++||+|.|.+.+.... .....|.|+||||||.+||+.|.+.+ ...+|+||+|.++
T Consensus 3 ~~~~V~d~~~~~---~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~--- 76 (117)
T cd06881 3 RSFTVTDTRRHK---KGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYF--- 76 (117)
T ss_pred EEEEecCcceec---CceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCccc---
Confidence 468999999986 4699999999863211 12358999999999999999998753 3458999999986
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 103 PFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 103 ~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
+++++++|++|+.+||.||+.|++||.|++++.|+.||+.
T Consensus 77 ------g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 77 ------GRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 4689999999999999999999999999999999999975
No 31
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.94 E-value=7.2e-27 Score=164.25 Aligned_cols=106 Identities=30% Similarity=0.416 Sum_probs=91.1
Q ss_pred EEEecCcEEecCCCcCeeEEEEEEEEc--CCCCCCCceEEEeehhHHHHHHHHHHhcC------CcccCCCCCCcccccC
Q psy10869 31 EIDVVNPITHGVAKKRYTDYEVRMKTN--LPVFKTKDSNVRRRYSDFEWLRNELERDS------KIVVPPLPGKAWKRQM 102 (163)
Q Consensus 31 ~v~V~~~~~~~~g~~~~~~Y~I~v~~~--~~~~~~~~~~V~RRYsdF~~L~~~L~~~~------~~~lP~lP~K~~~~~~ 102 (163)
.++|+||+++++| |++|+|.+... .+......|.|+||||||.+||+.|.... +..+||+|+|.++
T Consensus 4 ~~~V~dp~~~~~g---yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~--- 77 (118)
T cd07288 4 FYSVTDPRTHPKG---YTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVF--- 77 (118)
T ss_pred EEEecCCcCcCCC---cEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceee---
Confidence 5899999999877 99999998642 22223568999999999999999998632 2359999999986
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 103 PFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 103 ~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
++++++|||+||++||.||+.|++||.|++|+.|++||+.
T Consensus 78 ------g~f~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 78 ------GRFEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred ------ccCCHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 4689999999999999999999999999999999999975
No 32
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.94 E-value=1.3e-26 Score=162.05 Aligned_cols=110 Identities=23% Similarity=0.360 Sum_probs=94.3
Q ss_pred EEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC--cccCCCCCCcccccCCcCCCC
Q psy10869 31 EIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK--IVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 31 ~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~--~~lP~lP~K~~~~~~~~~~~~ 108 (163)
-++|++......++++|++|.|.+... ..+....|+|.||||||.+||..|.+.++ ...|+||+|.++
T Consensus 2 ~~~i~~~~~~~~~~~~yv~Y~i~~~~~-g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~--------- 71 (114)
T cd07300 2 LFEIPSARIIEQTISKHVVYQIIVIQT-GSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLT--------- 71 (114)
T ss_pred eEEecCceeeccCCcceEEEEEEEEEe-cCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCccc---------
Confidence 377888888777778999999987432 22557799999999999999999988654 336889999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCc
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPT 150 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~ 150 (163)
+++++++|++||.+||.||+.|++||.|+.++.|++||..++
T Consensus 72 ~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 113 (114)
T cd07300 72 GNFSEEIIAERRVALRDYLTLLYSLRFVRRSQAFQDFLTHPE 113 (114)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCcc
Confidence 568999999999999999999999999999999999999874
No 33
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.94 E-value=2.3e-26 Score=161.51 Aligned_cols=106 Identities=28% Similarity=0.379 Sum_probs=89.6
Q ss_pred EEEecCcEEecCCCcCeeEEEEEEEEcCCCC--CCCceEEEeehhHHHHHHHHHHhcC------CcccCCCCCCcccccC
Q psy10869 31 EIDVVNPITHGVAKKRYTDYEVRMKTNLPVF--KTKDSNVRRRYSDFEWLRNELERDS------KIVVPPLPGKAWKRQM 102 (163)
Q Consensus 31 ~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~--~~~~~~V~RRYsdF~~L~~~L~~~~------~~~lP~lP~K~~~~~~ 102 (163)
..+|+||+++++| ||+|+|.+++..... ....|.|+||||||.+||+.|...+ +..+||+|+|.++
T Consensus 4 ~~~V~dp~~~~~g---yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~--- 77 (118)
T cd07287 4 FYTVTDPRRHPKG---YTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVF--- 77 (118)
T ss_pred eEEecCCeEcCCC---eEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceee---
Confidence 3678999999766 999999987532110 1257999999999999999998742 3458999999986
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 103 PFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 103 ~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
+++++++||+||.+|+.||+.|++||.|++|+.|++||..
T Consensus 78 ------g~~d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 78 ------GRFDESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred ------cCCCHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 4689999999999999999999999999999999999975
No 34
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.94 E-value=2.4e-26 Score=159.81 Aligned_cols=105 Identities=29% Similarity=0.458 Sum_probs=89.4
Q ss_pred EEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCCCCC
Q psy10869 32 IDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDDGIF 111 (163)
Q Consensus 32 v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~~~~ 111 (163)
|.|.......+.+++|++|.|++..+ ...|.|+||||||.+||+.|++.++...++||+|.+++ .++
T Consensus 5 ~~i~~~~~~~~~~~~~~~Y~I~v~~~-----~~~~~v~RRYseF~~L~~~L~~~~~~~~~~lP~K~~~~--------~~~ 71 (109)
T cd06870 5 VSIPSSDEDREKKKRFTVYKVVVSVG-----RSSWFVFRRYAEFDKLYESLKKQFPASNLKIPGKRLFG--------NNF 71 (109)
T ss_pred eeeccceeeccCCCCeEEEEEEEEEC-----CeEEEEEeehHHHHHHHHHHHHHCcccCcCCCCCcccc--------cCC
Confidence 55555555455568999999999875 67999999999999999999987554456899999874 167
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 112 EEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 112 ~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
++++|++|+.+||.||+.|++||.+++++.+++||+.+
T Consensus 72 ~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 72 DPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 99999999999999999999999999999999999853
No 35
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.94 E-value=1.5e-26 Score=163.97 Aligned_cols=117 Identities=28% Similarity=0.541 Sum_probs=99.1
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHh---cCCcccCCCCCCcccccC---
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER---DSKIVVPPLPGKAWKRQM--- 102 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~---~~~~~lP~lP~K~~~~~~--- 102 (163)
.+.|.|+|+.+.+++ +.|+|+++++++.|....+.|.|||+||.|||++|.+ ++|+++||+|+|..+..+
T Consensus 2 ~l~i~vsD~~~~~d~----V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k 77 (141)
T cd07291 2 SLQIDIPDALSERDK----VKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREK 77 (141)
T ss_pred ccEEEeccccccCCC----EEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHh
Confidence 478999999998875 9999999999999999999999999999999999985 378999999999988542
Q ss_pred --Cc-CCCCCCCCHHHHHHH--------------HHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 103 --PF-RGDDGIFEEEFIEDR--------------RKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 103 --~~-~~~~~~~~~~~ie~R--------------r~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
++ .|..+....+|++.| +++||.||++|++||.|+++..|+.||+.+
T Consensus 78 ~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 78 MQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred hhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 22 233344556777755 356999999999999999999999999863
No 36
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.94 E-value=4.5e-26 Score=159.95 Aligned_cols=108 Identities=28% Similarity=0.358 Sum_probs=96.8
Q ss_pred CceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCC
Q psy10869 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
+...|.|++.+.. ++|++|.|+|..+ ...|.|.||||||.+||+.|++.+++..|+||+|+++
T Consensus 2 ~~~~v~I~~~~~~----~~~~~Y~I~V~~~-----~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~P~Kk~~-------- 64 (116)
T cd06875 2 PETKIRIPSAETV----EGYTVYIIEVKVG-----SVEWTVKHRYSDFAELHDKLVAEHKVDKDLLPPKKLI-------- 64 (116)
T ss_pred CCEEEEECCEEEE----CCEEEEEEEEEEC-----CeEEEEEecHHHHHHHHHHHHHHcCcccCcCCCcccc--------
Confidence 3467888887765 5799999999875 5789999999999999999999877788999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccc
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDK 153 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~ 153 (163)
++.++++|++||.+||.||+.|++++.++.+++|.+||+.+++|-
T Consensus 65 -~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~~~ 109 (116)
T cd06875 65 -GNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHKYEI 109 (116)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCceeE
Confidence 457999999999999999999999999999999999999998764
No 37
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.94 E-value=3.8e-26 Score=157.72 Aligned_cols=95 Identities=40% Similarity=0.678 Sum_probs=85.0
Q ss_pred cEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCCCCHHH
Q psy10869 37 PITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGIFEEEF 115 (163)
Q Consensus 37 ~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~~~~~~ 115 (163)
+++.+.+ .+|++|.|++.. ..|.|.||||||.+||+.|.+. +++.+|+||+|.++ ++.++++
T Consensus 9 ~~~~g~~-~~y~~Y~i~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~---------~~~~~~~ 71 (105)
T cd06866 9 PEKKGLF-LKHVEYEVSSKR-------FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIG---------GSADREF 71 (105)
T ss_pred ccccCcc-cCCEEEEEEEec-------CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccc---------cCCCHHH
Confidence 5666655 499999999863 5799999999999999999876 56789999999986 3579999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 116 IEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 116 ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
+++|+.+||.||+.|++||.+++|+.|+.||+.
T Consensus 72 ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 72 LEARRRGLSRFLNLVARHPVLSEDELVRTFLTE 104 (105)
T ss_pred HHHHHHHHHHHHHHHhcChhhccChHHHhhcCC
Confidence 999999999999999999999999999999985
No 38
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.94 E-value=1.9e-26 Score=164.95 Aligned_cols=114 Identities=28% Similarity=0.366 Sum_probs=92.9
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcC-----------CCCCCCceEEEeehhHHHHHHHHHHhcCC---cccCCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNL-----------PVFKTKDSNVRRRYSDFEWLRNELERDSK---IVVPPLPG 95 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~-----------~~~~~~~~~V~RRYsdF~~L~~~L~~~~~---~~lP~lP~ 95 (163)
|.=+|.++++.++|+++|++|+|.+.++. |.+....|.|.||||||.+||++|.+.+. +..+.+|+
T Consensus 4 i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~ 83 (132)
T cd06893 4 IPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPP 83 (132)
T ss_pred ccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCC
Confidence 34568889999999999999999997653 34556899999999999999999997532 22235666
Q ss_pred CcccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 96 KAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 96 K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
|.+... + .++++++|||+||.+||.||+.|++||.|+.|++|++||..
T Consensus 84 k~~p~l-p----~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 84 KRLFDL-P----FGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred ccCCCC-C----CCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 654211 1 25789999999999999999999999999999999999975
No 39
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.94 E-value=4.7e-26 Score=157.45 Aligned_cols=102 Identities=23% Similarity=0.420 Sum_probs=90.7
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC-CcccCCCCCCcccccCCcCCC
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS-KIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~-~~~lP~lP~K~~~~~~~~~~~ 107 (163)
.+.|.|+++....+++++|++|.|++. ..|.|.||||||.+||+.|.+.+ +..+|+||+|.++.
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yvvY~I~~~--------~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~------- 67 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFVVYNIYMA--------GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS------- 67 (106)
T ss_pred cceEecCCcceEcCCCCcEEEEEEEEc--------CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC-------
Confidence 378999999877666789999999874 26999999999999999999874 46789999999863
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
.+.++||+||.+||.||+.|++||.+++|+.|++||+.
T Consensus 68 ---~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 68 ---LSEQQLDARRRGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 47899999999999999999999999999999999985
No 40
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.94 E-value=3.5e-26 Score=161.92 Aligned_cols=117 Identities=23% Similarity=0.470 Sum_probs=98.8
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc---CCcccCCCCCCcccccCCc-
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD---SKIVVPPLPGKAWKRQMPF- 104 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~---~~~~lP~lP~K~~~~~~~~- 104 (163)
.+.|.|+|+...+++ +.|+|+++++++.|....+.|.|||+||.|||++|.++ +|+++||+|+|..+.....
T Consensus 2 ~l~v~isD~~~~~d~----V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k 77 (141)
T cd07292 2 ALQVDISDALSERDK----VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREK 77 (141)
T ss_pred ceEEEcccccccCCc----eEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHH
Confidence 478999999999876 99999999999999999999999999999999999853 7899999999998865422
Q ss_pred ---CC-CCCCCCHHHHH---------------HHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 105 ---RG-DDGIFEEEFIE---------------DRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 105 ---~~-~~~~~~~~~ie---------------~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
.| ..+++..++.+ +|+.+||.||++|++||.|+++..|+.||+.+
T Consensus 78 ~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~~ 141 (141)
T cd07292 78 LQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYN 141 (141)
T ss_pred HHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheeccC
Confidence 11 13344444444 66788999999999999999999999999853
No 41
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.94 E-value=5.6e-26 Score=157.57 Aligned_cols=104 Identities=30% Similarity=0.479 Sum_probs=92.1
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC-CcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS-KIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~-~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
++|+|++.+.. .++|++|.|+|... ...|.|.||||||.+||+.|.+.+ ...+|+||+|.+++.
T Consensus 1 ~~v~ip~~~~~---~~~~~~Y~I~v~~~-----~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~------- 65 (108)
T cd06897 1 LEISIPTTSVS---PKPYTVYNIQVRLP-----LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLS------- 65 (108)
T ss_pred CeEEcCCeEEc---CCCeEEEEEEEEcC-----CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecc-------
Confidence 47888888777 36799999999865 679999999999999999999864 456889999998752
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCC--CccCChhhhcccCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHP--LAQNERCLHMFLQE 148 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p--~l~~s~~l~~FL~~ 148 (163)
++.++++||+|+.+||.||+.|+++| .+++|++|++||+.
T Consensus 66 ~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 66 TSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCC
Confidence 36899999999999999999999999 99999999999985
No 42
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.93 E-value=3.1e-25 Score=157.11 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=93.8
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC---------cccCCCCCCccc
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK---------IVVPPLPGKAWK 99 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~---------~~lP~lP~K~~~ 99 (163)
.|++.|.+.++. .|.++|++|.|+|... .+..|.|+|||+||.+||..|.+.++ ..+|+||+|.++
T Consensus 3 ~i~~~I~~~~~~-~~~~~y~vY~I~v~~~----~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~ 77 (123)
T cd06882 3 AVSATIADIEEK-RGFTNYYVFVIEVKTK----GGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYV 77 (123)
T ss_pred cEEEEEeeeeEE-eCCCCEEEEEEEEEEc----CCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeec
Confidence 378999998876 5679999999999865 25689999999999999999998654 369999999987
Q ss_pred ccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC-ccCChhhhcccCCCccc
Q psy10869 100 RQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPL-AQNERCLHMFLQEPTID 152 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~-l~~s~~l~~FL~~~~~~ 152 (163)
+ +.+ +++++|+.+|+.||+.|+++|. ++.|+.+..||.....|
T Consensus 78 ~---------~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~~d 121 (123)
T cd06882 78 G---------RKA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTESD 121 (123)
T ss_pred C---------ccH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCccc
Confidence 4 233 9999999999999999999984 99999999999887544
No 43
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.93 E-value=4.2e-25 Score=153.71 Aligned_cols=104 Identities=24% Similarity=0.406 Sum_probs=91.5
Q ss_pred eEEEecCcEEecCC-CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVA-KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g-~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
+.|+|++.+...++ +++|++|.|+|..+ +..|.|.||||||.+||+.|.+.++ +|+||+|.+.
T Consensus 1 ~~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~-----~~~~~v~RRYseF~~Lh~~L~~~~~--~p~~P~K~~~--------- 64 (110)
T cd06880 1 IEVSIPSYRLEVDESEKPYTVFTIEVLVN-----GRRHTVEKRYSEFHALHKKLKKSIK--TPDFPPKRVR--------- 64 (110)
T ss_pred CEEEeCcEEEeeCCCCCCeEEEEEEEEEC-----CeEEEEEccHHHHHHHHHHHHHHCC--CCCCCCCCcc---------
Confidence 46889988887665 58999999999875 5689999999999999999999876 8999999963
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCccc
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTID 152 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~ 152 (163)
+.++++|++|+.+||.||+.|+++|. .+.+|.+||+.+...
T Consensus 65 -~~~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~~ 105 (110)
T cd06880 65 -NWNPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHFP 105 (110)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCCC
Confidence 46899999999999999999999998 589999999987543
No 44
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.93 E-value=5e-25 Score=156.90 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=93.3
Q ss_pred CceEEEecCcEEecCCCcCeeEEEEEEEEcC-----CCCCCCceEEEeehhHHHHHHHHHHhcCCc----ccCCCCCCcc
Q psy10869 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNL-----PVFKTKDSNVRRRYSDFEWLRNELERDSKI----VVPPLPGKAW 98 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~-----~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~----~lP~lP~K~~ 98 (163)
+...|.|.+.+...++++.|++|.|.|+... +......|.|.|||+||.+||+.|++.++. .+| +|+|++
T Consensus 7 ~~w~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP-~ppKk~ 85 (127)
T cd06878 7 GKWRANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELP-SLSKKW 85 (127)
T ss_pred CcceEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCC-CCCccc
Confidence 3478999999887778899999999998652 122356799999999999999999987543 344 556666
Q ss_pred cccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 99 KRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
+ ++.+.++||+||.+||.||+.|++++.++.+++|.+||++.
T Consensus 86 ~---------~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp~ 127 (127)
T cd06878 86 F---------KSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSPS 127 (127)
T ss_pred c---------ccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCCC
Confidence 5 34699999999999999999999999999999999999863
No 45
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.92 E-value=2.3e-24 Score=154.81 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=94.2
Q ss_pred eEEEecCcEEecCC-CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCC
Q psy10869 30 LEIDVVNPITHGVA-KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 30 l~v~V~~~~~~~~g-~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
-.|.|.+.....+. +++|++|.|+|......+....|.|.||||||.+||+.|.+. ++..+|+||+|..++..
T Consensus 20 ~~i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~----- 94 (133)
T cd06876 20 TRVSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLK----- 94 (133)
T ss_pred ceEEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCc-----
Confidence 36889888776543 689999999999764433346899999999999999999986 55678999999987421
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccC
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQ 147 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~ 147 (163)
..+.+++++|+.+|+.||+.|+++|.+++++.|..||+
T Consensus 95 --~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 95 --YSKTLLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 12799999999999999999999999999999999996
No 46
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.92 E-value=2.2e-24 Score=152.21 Aligned_cols=110 Identities=27% Similarity=0.449 Sum_probs=91.7
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDDG 109 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~~ 109 (163)
+++.|.+.+. .++|++|.|+|+++. +....|.|+||||||.+||+.|... +.. ++||+|.++ +
T Consensus 8 ~~~~i~~~~~----~~~~t~Y~I~v~~~~--~~~~~w~V~RRYsdF~~Lh~~L~~~-~~~-~plP~K~~~---------g 70 (120)
T cd06871 8 LTCVIEASQN----IQSHTEYIIRVQRGP--SPENSWQVIRRYNDFDLLNASLQIS-GIS-LPLPPKKLI---------G 70 (120)
T ss_pred eEEEEecCCC----ccCcEEEEEEEEECC--cCCceeEEEeeHHHHHHHHHHHHHc-CCC-CCCCCcccc---------C
Confidence 5666665442 367999999998642 3467999999999999999999864 333 469999986 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCC
Q psy10869 110 IFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYV 156 (163)
Q Consensus 110 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~ 156 (163)
+.++++|++|+.+||.||+.|++||.+++++.+..||+..+++..+.
T Consensus 71 ~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~~~~~~ 117 (120)
T cd06871 71 NMDREFIAERQQGLQNYLNVILMNPILASCLPVKKFLDPNNYSANFT 117 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcccCCcChh
Confidence 57999999999999999999999999999999999999888776654
No 47
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.92 E-value=1.3e-24 Score=152.70 Aligned_cols=105 Identities=23% Similarity=0.359 Sum_probs=91.6
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC-CcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS-KIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~-~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
++|+|++....++|++.|++|.|+|..+ ...|.|.||||||.+||..|.+.+ ....|+||+|.++
T Consensus 1 ~~v~IPs~~~~g~~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~--------- 66 (118)
T cd07277 1 INVWIPSVFLRGKGSDAHHVYQVYIRIR-----DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAI--------- 66 (118)
T ss_pred CEEEcCcEEEecCCCCCEEEEEEEEEEC-----CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCcc---------
Confidence 4788999898899899999999999875 678999999999999999999874 4568899999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
++.+.+++|+||.+||.||+.|+.| .+..++.+..||+..
T Consensus 67 g~~~~~~ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~ 106 (118)
T cd07277 67 GNKDAKFVEERRKRLQVYLRRVVNT-LIQTSPELTACPSKE 106 (118)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHH
Confidence 4579999999999999999999997 666777788887754
No 48
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.92 E-value=1.2e-24 Score=155.70 Aligned_cols=116 Identities=27% Similarity=0.557 Sum_probs=100.2
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc---CCcccCCCCCCcccccCCc--
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD---SKIVVPPLPGKAWKRQMPF-- 104 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~---~~~~lP~lP~K~~~~~~~~-- 104 (163)
+.|.|+|....+ .++.|+|.+++++|.|....+.|.|||+||.|||++|.+. +|+++||+|+|..+.....
T Consensus 3 ~~~~i~da~~~~----~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~ 78 (141)
T cd06892 3 LQVDISDALSER----DKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKL 78 (141)
T ss_pred eeeecccccccC----CeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCccccccccee
Confidence 678888876664 4899999999999999999999999999999999999864 7899999999997743311
Q ss_pred --CC-CCCCCCHHHHHHHHHHH---------------HHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 105 --RG-DDGIFEEEFIEDRRKGL---------------ETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 105 --~~-~~~~~~~~~ie~Rr~~L---------------e~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
.| ..+.+..+++++|+..| +.||++|+.||.|+++..|+.||+.+
T Consensus 79 ~klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~~ 141 (141)
T cd06892 79 QKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEYE 141 (141)
T ss_pred eecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcCC
Confidence 12 33568999999999999 58999999999999999999999853
No 49
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.92 E-value=1.8e-24 Score=149.14 Aligned_cols=99 Identities=20% Similarity=0.390 Sum_probs=87.1
Q ss_pred EEecCcEEecC-CCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC-CcccCCCCCCcccccCCcCCCCC
Q psy10869 32 IDVVNPITHGV-AKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS-KIVVPPLPGKAWKRQMPFRGDDG 109 (163)
Q Consensus 32 v~V~~~~~~~~-g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~-~~~lP~lP~K~~~~~~~~~~~~~ 109 (163)
|.|++++...+ ++++|++|.|++. ..|.+.||||||.+||..|.+.+ ++.+|+||+|.+++
T Consensus 2 v~I~~~~~~~~~~~~~y~~Y~I~v~--------~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~--------- 64 (104)
T cd06885 2 FSIPDTQELSDEGGSTYVAYNIHIN--------GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP--------- 64 (104)
T ss_pred CccCCcceeccCCCCcEEEEEEEEC--------CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc---------
Confidence 67788777665 6899999999974 35889999999999999999874 45899999999863
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 110 IFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 110 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
++.++||+||.+||.||+.|++||.++.|+.+++||..
T Consensus 65 -~~~~~ie~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 65 -LTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 46799999999999999999999999999999999964
No 50
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.90 E-value=2.6e-23 Score=148.47 Aligned_cols=97 Identities=24% Similarity=0.304 Sum_probs=85.3
Q ss_pred CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCCCCHHHHHHHHHH
Q psy10869 44 KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKG 122 (163)
Q Consensus 44 ~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~ 122 (163)
+..-+.|.|+|....+++....|.|.||||||.+||+.|++. +++.+|++|+|.++ ++++.++||+||.+
T Consensus 41 ~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l---------~~~~~~fiEeRR~g 111 (138)
T cd06879 41 NAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLL---------RMKNRALLEERRHS 111 (138)
T ss_pred CCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCcccc---------cCCCHHHHHHHHHH
Confidence 356778999998775555567999999999999999999986 55679999999986 45799999999999
Q ss_pred HHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 123 LETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 123 Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
||.||+.|+++|.++.++.+++||+.+
T Consensus 112 LE~fLq~Ll~~p~l~~s~~v~~FLele 138 (138)
T cd06879 112 LEEWMGKLLSDIDLSRSVPVASFLELE 138 (138)
T ss_pred HHHHHHHHHcCccccCCHHHHHHhCCC
Confidence 999999999999999999999999864
No 51
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.89 E-value=7.8e-23 Score=142.07 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=88.8
Q ss_pred EEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCC
Q psy10869 32 IDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGI 110 (163)
Q Consensus 32 v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~ 110 (163)
|+|.+.++..+. ++|++|.|.|+... .+..|.|.|||+||.+||..|.+. +...+|+||+|..++. .
T Consensus 2 ~~i~~~~~~~~~-~~~~vY~I~V~~~~---~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~--------~ 69 (109)
T cd06883 2 VSVFGFQKRYSP-EKYYIYVVKVTREN---QTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGR--------S 69 (109)
T ss_pred cEEEEEEEEecC-CceEEEEEEEEECC---CCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCc--------c
Confidence 677777776543 67999999998752 146799999999999999999886 5678999999998642 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCC
Q psy10869 111 FEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQE 148 (163)
Q Consensus 111 ~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~ 148 (163)
.+.+++++|+.+|+.||+.|++.| .+++|+.+..||.+
T Consensus 70 ~~~~~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 70 HIKQVAERRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 457899999999999999999985 99999999999975
No 52
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.89 E-value=1.4e-22 Score=139.11 Aligned_cols=101 Identities=34% Similarity=0.570 Sum_probs=80.3
Q ss_pred CcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCCCCHH
Q psy10869 36 NPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGIFEEE 114 (163)
Q Consensus 36 ~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~~~~~ 114 (163)
+.++.+++ .+++|.|+|..+.+ ...|.|.|||+||.+||+.|... ++..+|+||+|.+++. .++.+++
T Consensus 3 ~~~~~~~~--~~~~~~~~v~~~~~---~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~------~~~~~~~ 71 (105)
T smart00312 3 EPEKIGDG--KHYYYVIEIETKTG---LEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGR------LNNFSEE 71 (105)
T ss_pred CceecCCC--ceEEEEEEEEECCC---CceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhccc------CCcCCHH
Confidence 34444444 44555555544321 47899999999999999999986 5578999999998642 1357899
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccC-ChhhhcccC
Q psy10869 115 FIEDRRKGLETFINKIAGHPLAQN-ERCLHMFLQ 147 (163)
Q Consensus 115 ~ie~Rr~~Le~fL~~l~~~p~l~~-s~~l~~FL~ 147 (163)
++++|+.+|+.||+.|+++|.+++ |+++.+||+
T Consensus 72 ~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 72 FIEKRRRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 999999999999999999999999 999999985
No 53
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.88 E-value=7.2e-22 Score=134.97 Aligned_cols=104 Identities=33% Similarity=0.543 Sum_probs=92.8
Q ss_pred EEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCC
Q psy10869 32 IDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGI 110 (163)
Q Consensus 32 v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~ 110 (163)
|.|.+++...++++.+++|.|.+..+. ...|.|+|||+||.+||+.|... ++..+|+||+|.+++ .
T Consensus 2 i~I~~~~~~~~~~~~~~~Y~i~v~~~~----~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~---------~ 68 (106)
T cd06093 2 VSIPDYEKVKDGGKKYVVYIIEVTTQG----GEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFG---------N 68 (106)
T ss_pred EEeCCceEEcCCCCCEEEEEEEEEECC----CCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccc---------c
Confidence 778888887667789999999998762 47899999999999999999986 558899999999864 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 111 FEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 111 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
.+.+++++|+..|+.||+.|+.+|.+..++.+..||+.
T Consensus 69 ~~~~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~~ 106 (106)
T cd06093 69 LDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLEL 106 (106)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 68999999999999999999999999999999999963
No 54
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.88 E-value=4.9e-22 Score=141.29 Aligned_cols=98 Identities=21% Similarity=0.315 Sum_probs=83.9
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
|+|+|+++...+.|.+.|++|.|++... ...|.|.||||||.+||+.|++. +....|+||+|.++
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~--------- 66 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHFEFEVKITVL-----DETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLF--------- 66 (127)
T ss_pred CEEEECCeEEecCCCCcEEEEEEEEEEC-----CcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceec---------
Confidence 4789999988888888999999999864 56799999999999999999886 44667899999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcC-CCccCChh
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGH-PLAQNERC 141 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~-p~l~~s~~ 141 (163)
++.+.+++|+|+.+||.||+.|++. +.+..++.
T Consensus 67 g~~~~~~ie~Rr~~Le~yL~~Ll~~~~~~~~~~~ 100 (127)
T cd06874 67 GNKSERVAKERRRQLETYLRNFFSVCLKLPACPL 100 (127)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhchhccCCcc
Confidence 4568999999999999999999985 45666553
No 55
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.88 E-value=6e-22 Score=139.38 Aligned_cols=89 Identities=25% Similarity=0.380 Sum_probs=78.4
Q ss_pred CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCCCCHHHHHHHHHH
Q psy10869 44 KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKG 122 (163)
Q Consensus 44 ~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~ 122 (163)
.+.|++|.|+|.++... ...|.|.|||+||.+||..|++. ++..+|+||+|.+ .++|+|+.+
T Consensus 30 ~~~~~~Y~I~V~~~~~~--~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~---------------~~~E~Rr~~ 92 (119)
T cd06869 30 SKHHYEFIIRVRREGEE--YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK---------------LPREKLRLS 92 (119)
T ss_pred CCceEEEEEEEEECCCC--CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch---------------hHHHHHHHH
Confidence 57899999999987421 36999999999999999999875 5678999999985 467899999
Q ss_pred HHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 123 LETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 123 Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
|+.||+.|+++|.+++|++|..||..+
T Consensus 93 Le~yL~~Ll~~p~l~~s~~~~~FL~~~ 119 (119)
T cd06869 93 LRQYLRSLLKDPEVAHSSILQEFLTSD 119 (119)
T ss_pred HHHHHHHHhcChhhhcChHHHHhhCCC
Confidence 999999999999999999999999863
No 56
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.87 E-value=1.9e-21 Score=135.26 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=91.9
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCC
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDD 108 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~ 108 (163)
..|+|.+.+++.. .++|++|.|+|+...+ ...|.|+|||+||.+||..|++. |...+|+||+|.+++
T Consensus 2 ~~v~v~~~~kr~~-~~~~yvY~I~V~~~~~---~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~-------- 69 (111)
T cd06884 2 VRVTVVGFQKRYD-PEKYYVYVVEVTRENQ---ASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVG-------- 69 (111)
T ss_pred eEEEEEEEEEEec-CCCeEEEEEEEEEcCC---CceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeec--------
Confidence 4688999998765 4889999999986532 47899999999999999999886 557889999997764
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcC-CCccCChhhhcccCC
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIAGH-PLAQNERCLHMFLQE 148 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~~~-p~l~~s~~l~~FL~~ 148 (163)
...+.+++|+|+..||.||+.|++. |.+++|+.+..|+.+
T Consensus 70 ~~~~~~v~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 70 RSNIKSVAEKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 3468899999999999999999997 589999999999864
No 57
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.86 E-value=2.2e-21 Score=134.05 Aligned_cols=110 Identities=32% Similarity=0.575 Sum_probs=91.4
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCC
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
.++|.|.+.++.+. +..++|.++|..... ...|.|+|||+||.+||+.|... +...+|+||++.++..+
T Consensus 3 ~~~v~v~~~~~~~~--~~~~~~~~~i~~~~~---~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~----- 72 (113)
T PF00787_consen 3 IIQVSVVDPETSGN--KKKTYYIYQIELQDG---KESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNS----- 72 (113)
T ss_dssp EEEEEEEEEEEESS--SSEEEEEEEEEETTS---SSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSS-----
T ss_pred EEEEEEcCCEEEcC--CCEEEEEEEEEECCC---CEEEEEEEEHHHHHHHHHHHhhhhcccccccCCcccccccc-----
Confidence 46899998888843 456666666665421 57999999999999999999986 56899999999987521
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
+..+.+++++|+..|+.||+.|+++|.+..++.+..||+.+
T Consensus 73 -~~~~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 73 -RNLDPEFIEERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp -STTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 35799999999999999999999999999999999999863
No 58
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.86 E-value=5.2e-21 Score=138.01 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=86.9
Q ss_pred ceEEEecCcEEecCC--CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCc-----------------
Q psy10869 29 FLEIDVVNPITHGVA--KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKI----------------- 88 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g--~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~----------------- 88 (163)
.+++.|.+.+....+ ...+++|.|+|+.+ ...|.|.|||+||.+||..|... ...
T Consensus 3 ~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g-----~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~ 77 (140)
T cd06895 3 PIKARITDVERSGTTRHLLNPNLYTIELQHG-----QFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLK 77 (140)
T ss_pred CcEEEEeEEeccCCCCCCCceEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccc
Confidence 468889888776544 67899999999875 57999999999999999999885 323
Q ss_pred ------------ccCCCCCCcccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 89 ------------VVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 89 ------------~lP~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
.+|+||.+... ...++++++|+++||.||+.|+++|.++++.++.+||+.
T Consensus 78 ~~~~~~~~~~~~~lP~lP~~~~~----------~~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 78 RSRKPEREKKNRRLPSLPALPDI----------LVSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred cccccccccccccCCCCCCcccc----------ccCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 35555555532 138999999999999999999999999999999999975
No 59
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.85 E-value=2.1e-20 Score=131.02 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=89.6
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC----------cccCCCCCCccc
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK----------IVVPPLPGKAWK 99 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~----------~~lP~lP~K~~~ 99 (163)
..|.|.+.++.... ++|++|.|.|... ++..|.|+|||+||.+||..|++.++ ..+|.||+|.++
T Consensus 2 ~~~~~~~~~kr~~~-~~~y~Y~i~v~~s----~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~ 76 (118)
T cd06887 2 RHIALLGFEKRFVP-SQHYVYMFLVKWQ----DLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWF 76 (118)
T ss_pred eeEEEEEEEEeecC-CCcEEEEEEEEEc----CCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCccc
Confidence 46888888988754 7899999999875 36789999999999999999998643 579999999997
Q ss_pred ccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCCC
Q psy10869 100 RQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQEP 149 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~~ 149 (163)
+ +.+++|+|+.+|+.||+.|+..| .+++|+.+..||...
T Consensus 77 ~-----------~~~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 77 D-----------GQRAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred C-----------cchHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 4 23999999999999999997655 899999999999864
No 60
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.85 E-value=2.4e-20 Score=131.12 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=90.0
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC----------cccCCCCCCccc
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK----------IVVPPLPGKAWK 99 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~----------~~lP~lP~K~~~ 99 (163)
..|.|.+.+++.. .++|.+|.|+|+.. ++..|.|+|||+||.+||..|.+.++ ..||.||+|.++
T Consensus 2 ~~~~v~~~ekr~~-~~k~y~Y~i~V~~~----dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~ 76 (119)
T cd06888 2 KDVKVIDVEKRRA-PSKHYVYIINVTWS----DGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILF 76 (119)
T ss_pred eeEEEEEEEEEec-CCCcEEEEEEEEEc----CCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCccc
Confidence 3688999999874 47788999999986 36789999999999999999998643 259999999987
Q ss_pred ccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCC
Q psy10869 100 RQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQE 148 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~ 148 (163)
+. +...+++++|+..|+.||+.|++.| .+..|+.+..|+.+
T Consensus 77 g~--------s~~~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 77 RR--------SHIRDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred Cc--------chhHHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 42 2456799999999999999999997 78899999999875
No 61
>KOG2528|consensus
Probab=99.83 E-value=8.7e-21 Score=155.48 Aligned_cols=120 Identities=35% Similarity=0.589 Sum_probs=105.5
Q ss_pred CCceEEEecCcEEe--cCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCC
Q psy10869 27 ANFLEIDVVNPITH--GVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMP 103 (163)
Q Consensus 27 ~~~l~v~V~~~~~~--~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~ 103 (163)
...+.|.|.+|.+. ..|+++|+.|.++-..+ .-.|.|||+.|.|||++|... +.+.+|+||.|..-
T Consensus 183 ~~~~~c~v~~p~k~sk~kg~ks~i~y~ltpt~t-------~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~---- 251 (490)
T KOG2528|consen 183 PSPFRCVVDDPKKESKFKGLKSYIAYQLTPTHT-------NISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVT---- 251 (490)
T ss_pred CCCeeEEecCcccccccccchheeEeeeccccc-------CcchhhcccccHHHHHHHHhhcccccCCCCCccccc----
Confidence 34578999998774 46799999999986432 234999999999999999765 67889999999974
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCCCCCCcC
Q psy10869 104 FRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYVPGKIRN 162 (163)
Q Consensus 104 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~~~~ 162 (163)
|++.++||++||+.|+.|++.+|.||+|.+++.++.||+....++.|+.|||+.
T Consensus 252 -----gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GKRkA 305 (490)
T KOG2528|consen 252 -----GRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGKRKA 305 (490)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCccccccccccccc
Confidence 678999999999999999999999999999999999999988899999999973
No 62
>KOG2273|consensus
Probab=99.82 E-value=1.7e-19 Score=154.54 Aligned_cols=117 Identities=40% Similarity=0.729 Sum_probs=105.4
Q ss_pred eEEEecCcE-EecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHh-cCCcccCCCCCCcccccCCcCCC
Q psy10869 30 LEIDVVNPI-THGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER-DSKIVVPPLPGKAWKRQMPFRGD 107 (163)
Q Consensus 30 l~v~V~~~~-~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~-~~~~~lP~lP~K~~~~~~~~~~~ 107 (163)
+.|.+++++ ..+.+++.|+.|.|.+.+..+.+......|+|||+||.+||..|.. ++++.+||+|+|..... +.
T Consensus 110 ~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~----~~ 185 (503)
T KOG2273|consen 110 LSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGS----KS 185 (503)
T ss_pred eeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhc----cc
Confidence 677788888 5667789999999999999999999999999999999999999977 58899999999998764 12
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCc
Q psy10869 108 DGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPT 150 (163)
Q Consensus 108 ~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~ 150 (163)
.+.++.+|+++||++|+.||++|+.||.|++++.|..||+.+.
T Consensus 186 ~~~~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 186 GDSFSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDS 228 (503)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccc
Confidence 3578999999999999999999999999999999999999984
No 63
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.81 E-value=3e-19 Score=123.17 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=86.4
Q ss_pred EEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC-cccCCCCCCcccccCCcCCCCCC
Q psy10869 32 IDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK-IVVPPLPGKAWKRQMPFRGDDGI 110 (163)
Q Consensus 32 v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~-~~lP~lP~K~~~~~~~~~~~~~~ 110 (163)
|+|.+.+++... ++|.+|.|+|.... ......|+|||+||.+||..|++.++ +.+|.||+|.+++. +
T Consensus 2 ~~V~~f~Kr~~p-~k~yvY~i~V~~~~---~~~~~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~gr--------s 69 (109)
T cd07289 2 VSVFTYHKRYNP-DKHYIYVVRILREG---QIEPSFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGR--------T 69 (109)
T ss_pred cEEeeEEEEEcC-CCeEEEEEEEEECC---CceeEEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCC--------C
Confidence 678888877654 56789999999862 12224499999999999999999865 56999999998742 2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCC
Q psy10869 111 FEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQE 148 (163)
Q Consensus 111 ~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~ 148 (163)
...+++|+|+..|+.||+.|++.| .+++|+.+..|+.+
T Consensus 70 ~~~~vae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 70 HIKDVAAKRKVELNSYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCChhhhcChHHHHhccc
Confidence 347899999999999999999987 79999999999864
No 64
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.81 E-value=2.6e-19 Score=127.39 Aligned_cols=114 Identities=25% Similarity=0.401 Sum_probs=83.4
Q ss_pred ceEEEecCcEEecCC----CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC-cccCCCCCCccccc--
Q psy10869 29 FLEIDVVNPITHGVA----KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK-IVVPPLPGKAWKRQ-- 101 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g----~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~-~~lP~lP~K~~~~~-- 101 (163)
.|.+.|.+.+.-..+ ...|++|.|+++.+ ...|.|.|||+||.+||+.|..... ..+ +||+|.+-..
T Consensus 3 ~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g-----~~~w~V~rRy~~F~~Lh~~L~~~~~~~~~-plP~k~~~~~r~ 76 (135)
T cd07296 3 PIKARVLEVERFTSTSDVKKPSLNVYTIELTHG-----EFTWQVKRKFKHFQELHRELLRYKAFIRI-PIPTRSHTVRRQ 76 (135)
T ss_pred ceEEEEEEEEEeeccccccccceEEEEEEEEeC-----CEEEEEEeehHHHHHHHHHHHhcCCCCCC-CCCcccchhhcc
Confidence 478888888774433 56899999999865 5799999999999999999998322 233 5788876210
Q ss_pred ---------CCc--CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 102 ---------MPF--RGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 102 ---------~~~--~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
+|. .+.......+.+.+|+++||.||+.|++.|.++++.++.+||+.
T Consensus 77 ~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 77 TIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred ccccccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 111 01001112223348999999999999999999999999999975
No 65
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.81 E-value=6.2e-19 Score=121.71 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=84.1
Q ss_pred EEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCC
Q psy10869 32 IDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGI 110 (163)
Q Consensus 32 v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~ 110 (163)
|-|+..+++-.. ++|.+|.|+|+... ....|.|.|||+||.+||..|++. |...+|.||+|.+++ .
T Consensus 2 ~~~~~~~kr~~p-~k~y~Y~I~V~~~~---~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g---------~ 68 (109)
T cd07290 2 VFLCRHESTFNP-SKGYAYVVKVQREG---HKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIG---------R 68 (109)
T ss_pred eeEeeeeEEecC-CCcEEEEEEEEECC---CceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccC---------c
Confidence 456667776655 56677999998763 134599999999999999999987 456799999999874 2
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHcC-CCccCChhhhcccCC
Q psy10869 111 FE-EEFIEDRRKGLETFINKIAGH-PLAQNERCLHMFLQE 148 (163)
Q Consensus 111 ~~-~~~ie~Rr~~Le~fL~~l~~~-p~l~~s~~l~~FL~~ 148 (163)
.+ .+++|+|+..|+.||+.|+.. |.+.+|+.+..|+.+
T Consensus 69 s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 69 SRGEAVAERRKEELNGYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCChheecCHHHHHhccc
Confidence 33 799999999999999887666 489999999999864
No 66
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.79 E-value=1.6e-18 Score=120.99 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=85.1
Q ss_pred EEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC---------cccCCCCCCccccc
Q psy10869 31 EIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK---------IVVPPLPGKAWKRQ 101 (163)
Q Consensus 31 ~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~---------~~lP~lP~K~~~~~ 101 (163)
+++|...... +.++.|.|.|+.. ++..|.|.|||+||.+||.+|.+.++ ..+|.||++...
T Consensus 2 ~~~V~~~~~~----~~~y~Y~i~v~~s----~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~-- 71 (112)
T cd06890 2 SASVESVLLE----DNRYWYRVRATLS----DGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD-- 71 (112)
T ss_pred eEEEEEEEEE----CCEEEEEEEEEEc----CCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC--
Confidence 4666666555 3589999999976 37899999999999999999998643 358999988753
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCC
Q psy10869 102 MPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQE 148 (163)
Q Consensus 102 ~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~ 148 (163)
..+.+++++|+.+|+.||+.|+.+| .+..|+.+..||..
T Consensus 72 --------~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 72 --------VVNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred --------cchhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 2588999999999999999999999 99999999999975
No 67
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.66 E-value=2.4e-15 Score=105.46 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=85.0
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC----------cccCCCCCCcc
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK----------IVVPPLPGKAW 98 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~----------~~lP~lP~K~~ 98 (163)
.+.|...+.++ .++|.+|.|.|++. ++..|.|+|||+||.+||.+|.+.++ +.||.||.+.+
T Consensus 5 ~~~v~~~g~~k----~~~h~~Y~i~V~ws----dgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~ 76 (121)
T cd06889 5 PVDVQGVGVMQ----KRRHKTYMFSVLWS----DGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPS 76 (121)
T ss_pred eEEEEEEeeec----ccceeEEEEEEEEc----CCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcc
Confidence 45666666555 35789999999987 47899999999999999999998643 56999999998
Q ss_pred cccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCC
Q psy10869 99 KRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQE 148 (163)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~ 148 (163)
++.. ....+..+.|+..|+.|++.|++.| .+..|+.+..|+.+
T Consensus 77 ~~~~-------~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 77 LGSL-------KGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred cCCc-------ccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 7420 0133457799999999999999997 79999999999875
No 68
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.62 E-value=5e-15 Score=103.61 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=84.6
Q ss_pred ceEEEecCcEEecCCCcCe--eEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCccc------
Q psy10869 29 FLEIDVVNPITHGVAKKRY--TDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWK------ 99 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~--~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~------ 99 (163)
.|.|.|.+.+....|.+.+ ++|+|+++.+ .-.|.|.|||++|.+||+.|..+ ....+||+|....-
T Consensus 3 pi~~~V~~~er~~s~s~~~~~~lYtIeltHG-----~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~ 77 (130)
T cd07297 3 PVTAKVENTERYTTGSKVHVCTLYTVRLTHG-----EFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLE 77 (130)
T ss_pred ceEEEEEEEEEeecccccccceeEEEEEecC-----ceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccc
Confidence 4789999999877765555 8999999876 58999999999999999999875 33445555522111
Q ss_pred ---ccCCcC-CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCC
Q psy10869 100 ---RQMPFR-GDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148 (163)
Q Consensus 100 ---~~~~~~-~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 148 (163)
..+|.. +..+.. .+-+..|+++||.||+.|+..+..++..+..+||+.
T Consensus 78 ~~~~~mP~LP~~~~~~-~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 78 GLTEEMPSLPGTDREA-SRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred cccCcCCCCCCCCchh-hhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 112220 000112 455778999999999999999999999999999975
No 69
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.57 E-value=6e-15 Score=126.13 Aligned_cols=119 Identities=36% Similarity=0.603 Sum_probs=101.8
Q ss_pred chhhhhcCCCCceEEEecCcEEecCC---CcCeeEEEEEEEEcCCCCCCCce---EEEeehhHHHHHHHHHHhc-CCccc
Q psy10869 18 TLDDAYAAPANFLEIDVVNPITHGVA---KKRYTDYEVRMKTNLPVFKTKDS---NVRRRYSDFEWLRNELERD-SKIVV 90 (163)
Q Consensus 18 ~~~~~~~~~~~~l~v~V~~~~~~~~g---~~~~~~Y~I~v~~~~~~~~~~~~---~V~RRYsdF~~L~~~L~~~-~~~~l 90 (163)
.+...+..+..++.+.|..++....+ ...|+.|.|...++.|.+..... +|.||||||.+||..|... |.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~p~s~~~~~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~i 198 (524)
T COG5391 119 PLSTSHTILDYFISSTVSNPQSLTLLVDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAI 198 (524)
T ss_pred CCcccccchHhHhhhccccchhcccccccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCC
Confidence 44555666778899999998886544 57899999999999999988888 9999999999999999875 78999
Q ss_pred CCCCCCcccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCCh
Q psy10869 91 PPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNER 140 (163)
Q Consensus 91 P~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~ 140 (163)
||||+|.+...+. .++++++|+++|+..|+.||+.++.||.+.++.
T Consensus 199 PplP~K~~~s~~~----~~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 199 PPLPSKKSNSEYY----GDRFSDEFIEERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred CCCCchhhhcccc----ccccchHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 9999999875321 167999999999999999999999999988743
No 70
>KOG1259|consensus
Probab=99.56 E-value=7e-15 Score=117.55 Aligned_cols=98 Identities=28% Similarity=0.374 Sum_probs=79.6
Q ss_pred CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCCCCCCHHHHHHHHHHH
Q psy10869 44 KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGL 123 (163)
Q Consensus 44 ~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~L 123 (163)
...|++|.|+|+.+ ..+|.|.|||+||..||++|...-.+.---||||++. |+..+.++|+|+.+|
T Consensus 24 ~~~~t~y~i~v~~g-----~~ew~v~~ry~df~~lheklv~e~~i~k~llppkk~i---------g~~~~s~~e~r~~~l 89 (490)
T KOG1259|consen 24 SGGVTYYDIKVRVG-----KVEWLVERRYRDFANLHEKLVGEISISKKLLPPKKLV---------GNKQPSFLEQRREQL 89 (490)
T ss_pred cCceEEEEEEEEec-----ceeeeehhhhhHHHHHHHHhhhhheeccccCCchhhc---------CCCChhHHHHHHHHH
Confidence 56799999999986 7899999999999999999987654444458999986 678999999999999
Q ss_pred HHHHHHHHcCCCccCChhhhcccCCCcccccC
Q psy10869 124 ETFINKIAGHPLAQNERCLHMFLQEPTIDKNY 155 (163)
Q Consensus 124 e~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~ 155 (163)
|.|||.++..=.-.--.++..||.-.-++-+|
T Consensus 90 eiylq~ll~~f~~~~pr~la~fl~f~~y~i~~ 121 (490)
T KOG1259|consen 90 EIYLQELLIYFRTELPRALAEFLDFNKYDIIY 121 (490)
T ss_pred HHHHHHHHHHccccCHHHHHHHhccchHHHHH
Confidence 99999998653223345788888776666554
No 71
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.35 E-value=9.8e-12 Score=83.45 Aligned_cols=85 Identities=15% Similarity=0.296 Sum_probs=71.0
Q ss_pred eEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCCCCHHHHHHHHHHHHHH
Q psy10869 48 TDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETF 126 (163)
Q Consensus 48 ~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~f 126 (163)
..|.|+|.... +....|+|+|.||.+||.+|++. |...+|.||.+...+. .+. -++|.+.|+.|
T Consensus 13 ~lY~i~V~~sd----~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~---------~~~--~~~R~~~L~~Y 77 (101)
T cd06896 13 NLYLVQVTQSC----NLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPF---------TDS--DHKRVRDLNHY 77 (101)
T ss_pred eEEEEEEEEeC----CCcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCc---------ccH--HHHHHHHHHHH
Confidence 56999998752 67889999999999999999986 6788999999976532 222 36799999999
Q ss_pred HHHHHcCC-CccCChhhhcccC
Q psy10869 127 INKIAGHP-LAQNERCLHMFLQ 147 (163)
Q Consensus 127 L~~l~~~p-~l~~s~~l~~FL~ 147 (163)
|+.|++.+ .+++|+.+..|+.
T Consensus 78 l~~Ll~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 78 LEQLLSGSREVANSDCVLSFFL 99 (101)
T ss_pred HHHHHccCHHHhcchHHHHHhh
Confidence 99999886 8999999998875
No 72
>KOG3784|consensus
Probab=99.20 E-value=4.4e-11 Score=97.70 Aligned_cols=101 Identities=21% Similarity=0.425 Sum_probs=86.1
Q ss_pred EEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCC
Q psy10869 32 IDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGI 110 (163)
Q Consensus 32 v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~ 110 (163)
+.|+++.... +.+.|++|.|++. ..+.+..||+.+..||..|+.. .+..+|.+|+|..|.
T Consensus 3 ~~v~~t~~~~-~~~~ytaynih~n--------G~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~---------- 63 (407)
T KOG3784|consen 3 FSVPDTSYLT-SLERYTAYNIHIN--------GRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFK---------- 63 (407)
T ss_pred cCccchhhcc-Ccccccceeeeec--------ceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccC----------
Confidence 4455555544 5689999999974 3467889999999999999875 678899999999975
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcc
Q psy10869 111 FEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTI 151 (163)
Q Consensus 111 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~ 151 (163)
+.+.-+++||..||.||++++++|.++.+..+..||...+.
T Consensus 64 L~~~~~~~rr~~leqylqa~~q~~~l~~s~~~~~fL~~~q~ 104 (407)
T KOG3784|consen 64 LTPQQLDSRRRGLEQYLQAVCQDPVLARSELVQKFLMRAQP 104 (407)
T ss_pred CChhhhHHHHHHHHHHHHHHhcCccccchhhhhHHHHhccc
Confidence 68999999999999999999999999999999999976543
No 73
>KOG4773|consensus
Probab=98.77 E-value=9e-09 Score=83.03 Aligned_cols=128 Identities=22% Similarity=0.326 Sum_probs=95.6
Q ss_pred cccccccccccccchhhhhcCCCCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHh
Q psy10869 5 TAEATKRLHVKKQTLDDAYAAPANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER 84 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~ 84 (163)
++..+.+..+.-..+++....+.+.+.+. +.. +..+|.+|.|++++. ...+..|+|||.||..++..|++
T Consensus 2 ~vk~q~~~~s~~~~~pddi~~~~kvi~~e-----ke~-~f~~hFvyVievkw~----~~se~vVyrry~E~~~~tkklee 71 (386)
T KOG4773|consen 2 AVKQQLRAESDFEQLPDDIAIPAKVIDAE-----KER-SFTSHFVYVIEVKWY----GGSEGVVYRRYFEFHALTKKLEE 71 (386)
T ss_pred chhhhhhcccchhhCcccccchHHHHhHH-----Hhc-ccchheEEEEEehhh----ccccceeeeehhhhhhhcchHhh
Confidence 34556666666566667776555544433 322 234599999999875 36689999999999999999998
Q ss_pred cCC----------cccCCCCCCcccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCcc-CChhhhcccCCCccc
Q psy10869 85 DSK----------IVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQ-NERCLHMFLQEPTID 152 (163)
Q Consensus 85 ~~~----------~~lP~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~-~s~~l~~FL~~~~~~ 152 (163)
.++ +.+|+||.+.+|. +..+..|+|...|+.|+.-|++.|+.+ .++.|..|.-...+|
T Consensus 72 ~f~~ss~k~t~l~~n~p~LpA~v~fd----------fkqe~Ae~r~~~ln~y~e~LlslPi~~l~~p~l~~fffvsp~D 140 (386)
T KOG4773|consen 72 RFGPSSGKSTALACNLPTLPAIVYFD----------FKQEIAEERIPALNAYCEWLLSLPIGRLGGPGLRPFFFVSPYD 140 (386)
T ss_pred cCCCcccccCchhccCCCCcceeEec----------hhhhhhhhhhHHHHHHHHHHHhcchhhcCCCCceeeeeeccch
Confidence 632 7899999999985 578999999999999999999999543 466777666544444
No 74
>KOG0905|consensus
Probab=98.61 E-value=2.2e-07 Score=84.80 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=92.4
Q ss_pred CCCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCc
Q psy10869 26 PANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPF 104 (163)
Q Consensus 26 ~~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~ 104 (163)
......|.|...+++... +++..|.|+|.... ......++|-|.||.+||.+|+.. |-..+|.+|.....+++
T Consensus 1372 dgRi~~v~v~~f~K~~~p-nK~YmYvveV~r~n---~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~grs-- 1445 (1639)
T KOG0905|consen 1372 DGRISEVTVLKFEKHYSP-NKIYMYVVEVTREN---QAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLGRS-- 1445 (1639)
T ss_pred CCceEEEEEEEeeeeccC-CceEEEEEEEEecC---CCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeeccc--
Confidence 456678888888887654 88999999998752 235667999999999999999986 55789999998876542
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCCCc
Q psy10869 105 RGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQEPT 150 (163)
Q Consensus 105 ~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~~~ 150 (163)
.-..+.++|...|+.||..|..-+ .+++|+.+..|+-+--
T Consensus 1446 ------nikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhpll 1486 (1639)
T KOG0905|consen 1446 ------NIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHPLL 1486 (1639)
T ss_pred ------chhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeechhh
Confidence 457789999999999999999875 8999999999986543
No 75
>KOG2101|consensus
Probab=98.55 E-value=3.7e-07 Score=75.52 Aligned_cols=90 Identities=28% Similarity=0.405 Sum_probs=65.0
Q ss_pred CCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC--ccc--CCCC---CCcccccCCcCCCCCCCCHHH
Q psy10869 43 AKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK--IVV--PPLP---GKAWKRQMPFRGDDGIFEEEF 115 (163)
Q Consensus 43 g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~--~~l--P~lP---~K~~~~~~~~~~~~~~~~~~~ 115 (163)
..+.|++|.|.|...........|.|+|||+||..||.+|.+.++ ..+ |..+ .+..+ .++++..+
T Consensus 131 ~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 202 (362)
T KOG2101|consen 131 KSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKL--------LGNFDADV 202 (362)
T ss_pred cccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHh--------hccchhhh
Confidence 357899999999865321233469999999999999999999772 222 2222 11122 25789999
Q ss_pred HHHHHHHHHHHH--HHHHcCCCccCCh
Q psy10869 116 IEDRRKGLETFI--NKIAGHPLAQNER 140 (163)
Q Consensus 116 ie~Rr~~Le~fL--~~l~~~p~l~~s~ 140 (163)
+.+|+..++.|| +....++...++.
T Consensus 203 ~~~r~~~~~~fl~~~f~~~~~~~~~~~ 229 (362)
T KOG2101|consen 203 IPERSEALEEFLSLQFKDSKPSNVNCK 229 (362)
T ss_pred hhhhhhhHHHHHHhhhhhccccccchH
Confidence 999999999999 7776666555544
No 76
>KOG1660|consensus
Probab=98.43 E-value=7.6e-07 Score=72.09 Aligned_cols=114 Identities=24% Similarity=0.555 Sum_probs=84.1
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc---CCcccCCCCCCcccccC--Cc
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD---SKIVVPPLPGKAWKRQM--PF 104 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~---~~~~lP~lP~K~~~~~~--~~ 104 (163)
+.+.|++.-... .-+-|++++++.+|.+. ....|.|-..+|.|||..+... .|.++||-|++..|... ++
T Consensus 26 ~~~eis~a~se~----~kvK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~rekl 100 (399)
T KOG1660|consen 26 LLVEISDALSEI----GKVKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKL 100 (399)
T ss_pred eeeeechhhhhc----ccceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHH
Confidence 455555443332 25889999999999888 8899999999999999999763 57899999998877532 11
Q ss_pred ----CCCCCCCCHHHHHHHHHHH---------------HHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 105 ----RGDDGIFEEEFIEDRRKGL---------------ETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 105 ----~~~~~~~~~~~ie~Rr~~L---------------e~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
.|...+...+|+ +-+..| +.||++|+.||+|+.+..|..||+.+
T Consensus 101 QkLGeGe~~mTkEEf~-KmK~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~ 163 (399)
T KOG1660|consen 101 QKLGEGEGWMTKEEFL-KMKQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYD 163 (399)
T ss_pred HHhcCCcccccHHHHH-HHHHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhc
Confidence 132223334444 333343 58999999999999999999999987
No 77
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=98.32 E-value=8.8e-06 Score=55.83 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=62.1
Q ss_pred ceEEEecCcEEecCC---CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CC---cccCCCCCCccccc
Q psy10869 29 FLEIDVVNPITHGVA---KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SK---IVVPPLPGKAWKRQ 101 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g---~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~---~~lP~lP~K~~~~~ 101 (163)
.|++...+-+....+ ..+-++|.|.+... +..|.|.|+|-||.-|.+.|... +. ..++.||+.....
T Consensus 6 ~lq~~L~~~~~e~~~~~~~~~e~~~~v~v~Cq-----grsw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~~~~l~- 79 (115)
T cd07298 6 SIQLSLGEEQNEVMRNGCESKELVYLVQIACQ-----GRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPRSDSLK- 79 (115)
T ss_pred ceeeecccCccchhccCCCCCCeEEEEEEEeC-----CCceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCCccccc-
Confidence 356666554433221 24679999999875 78999999999999999999774 21 3488899876432
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q psy10869 102 MPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP 134 (163)
Q Consensus 102 ~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p 134 (163)
..++.++ ..|..||.++....
T Consensus 80 ---------~~~~~v~---~~l~~YL~RlS~Ia 100 (115)
T cd07298 80 ---------DSPESVT---QMLMAYLSRLSAIA 100 (115)
T ss_pred ---------ccHHHHH---HHHHHHHHHHHHHh
Confidence 2456664 58899999887653
No 78
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=98.32 E-value=9.7e-06 Score=55.39 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=63.2
Q ss_pred ceEEEecCcEEe-cCC-CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CC---cccCCCCCCcccccC
Q psy10869 29 FLEIDVVNPITH-GVA-KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SK---IVVPPLPGKAWKRQM 102 (163)
Q Consensus 29 ~l~v~V~~~~~~-~~g-~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~---~~lP~lP~K~~~~~~ 102 (163)
.+++.+.+-+.. ..+ ..+-++|.|.|... ++.|.|.|.|-||.-|.+.|... +. ..++.||+-...
T Consensus 6 ~iQ~~l~~~~~~~~~~~~~k~~~~~v~V~cq-----g~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~--- 77 (114)
T cd07278 6 SLQVVLSDDGSLKSYKNSGKELVYLVQVQCQ-----GKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIE--- 77 (114)
T ss_pred ceEEEeccCcccCCCCCCCCceEEEEEEEeC-----CcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccc---
Confidence 467777765554 223 57889999999875 78999999999999999999774 22 357778875432
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q psy10869 103 PFRGDDGIFEEEFIEDRRKGLETFINKIAGHP 134 (163)
Q Consensus 103 ~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p 134 (163)
...++-+ ...|..||.++....
T Consensus 78 -------~~~~~~~---~~~l~~YL~RlS~Ia 99 (114)
T cd07278 78 -------KREQQNL---HQVLSDYLKRLSSIA 99 (114)
T ss_pred -------cchHHHH---HHHHHHHHHHHHHHh
Confidence 1233444 458999999887653
No 79
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=98.22 E-value=1.3e-05 Score=54.60 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=59.5
Q ss_pred eEEEecCcEEecCC-CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CC---cccCCCCCCcccccCCc
Q psy10869 30 LEIDVVNPITHGVA-KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SK---IVVPPLPGKAWKRQMPF 104 (163)
Q Consensus 30 l~v~V~~~~~~~~g-~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~---~~lP~lP~K~~~~~~~~ 104 (163)
|++...+-+....+ ..+.++|.|+|... ++.|.|.|.|-||..|.+.|... +. ..+++||+-.-..
T Consensus 7 iql~l~~~~~~~~~~~~k~~~flv~V~cq-----grsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l~---- 77 (113)
T cd07299 7 IQLQLSNERSDWTSSSEKDLVFLVQVTCQ-----GRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEIG---- 77 (113)
T ss_pred eeeecccCccCccCCCCCceEEEEEEEec-----CcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCcccccc----
Confidence 55555554443333 57899999999865 67999999999999999999774 22 3566777653221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q psy10869 105 RGDDGIFEEEFIEDRRKGLETFINKIAGH 133 (163)
Q Consensus 105 ~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~ 133 (163)
...+.+ ...|..||.++...
T Consensus 78 ------~~~~~~---~~~l~~YL~RlS~I 97 (113)
T cd07299 78 ------DRLQIL---TPLLSEYLNRLTGI 97 (113)
T ss_pred ------chHHHH---HHHHHHHHHHHHHH
Confidence 122333 45889999998765
No 80
>PLN02866 phospholipase D
Probab=93.65 E-value=0.23 Score=46.39 Aligned_cols=113 Identities=18% Similarity=0.273 Sum_probs=71.1
Q ss_pred EEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-------------------CCc---
Q psy10869 31 EIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-------------------SKI--- 88 (163)
Q Consensus 31 ~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-------------------~~~--- 88 (163)
-|.|+-|+... -..--..|+|++... .-.|.+++.-+.-.-||-.|++. .++
T Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1068)
T PLN02866 17 IVSVSRPDAGD-ISPVLLSYTIELQYK-----QFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDH 90 (1068)
T ss_pred EEEEecCCCCC-CCceEEEEEEEEEEe-----eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 35555444432 123467899999875 68899999988877777666542 010
Q ss_pred -------------ccCC----------CCCCcccccCCc-CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhc
Q psy10869 89 -------------VVPP----------LPGKAWKRQMPF-RGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHM 144 (163)
Q Consensus 89 -------------~lP~----------lP~K~~~~~~~~-~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~ 144 (163)
.+|. .|+...+ |. +.+.| ....+...++.+||.||+.++.+..++++.++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~ 166 (1068)
T PLN02866 91 PAVVQDDDEPDDGTVPLHHDESAKNRDVPSSAAL---PVIRPALG-RQQSISDRAKVAMQEYLNHFLGNLDIVNSREVCK 166 (1068)
T ss_pred ccccccccccccccccccchhhcccCCCcchhhc---ceeccccC-CCccccHHHHHHHHHHHHHHhccchhcCCHhhhh
Confidence 1111 1111111 11 00111 2345556677779999999999999999999999
Q ss_pred ccCCCcccc
Q psy10869 145 FLQEPTIDK 153 (163)
Q Consensus 145 FL~~~~~~~ 153 (163)
||+.+....
T Consensus 167 FlevS~lsf 175 (1068)
T PLN02866 167 FLEVSKLSF 175 (1068)
T ss_pred heeeceeee
Confidence 999886543
No 81
>PF15050 SCIMP: SCIMP protein
Probab=70.52 E-value=6.1 Score=27.77 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=29.3
Q ss_pred CCceEEEe----ehhHHHHHHHHHHhcCCcccCCCCCCcccc
Q psy10869 63 TKDSNVRR----RYSDFEWLRNELERDSKIVVPPLPGKAWKR 100 (163)
Q Consensus 63 ~~~~~V~R----RYsdF~~L~~~L~~~~~~~lP~lP~K~~~~ 100 (163)
+++|.+.+ +-.|=+..++.+.......+|+||++....
T Consensus 38 Gkkweiakp~k~~~rdeEkmYENv~n~~~~~LPpLPPRg~~s 79 (133)
T PF15050_consen 38 GKKWEIAKPLKQKQRDEEKMYENVLNQSPVQLPPLPPRGSPS 79 (133)
T ss_pred cccceeccchhhhcccHHHHHHHhhcCCcCCCCCCCCCCCCC
Confidence 67788766 444677788877777778999999999764
No 82
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=64.39 E-value=6.4 Score=34.58 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=70.8
Q ss_pred cEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCCCCCCCCHHH
Q psy10869 37 PITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGDDGIFEEEF 115 (163)
Q Consensus 37 ~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~~~~~~~~~~ 115 (163)
+....++..+++.+.+..+. -.++++|.+|.-.+..+... .+...|+.++....-..+..+.....+..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~---------~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 100 (524)
T COG5391 30 SSTVKNNDGSPVNSSIKSTP---------LDIQKRYSGFESSAKLPRISDAPSFVPPPGGHTISYTIAIHDSKIHSRASE 100 (524)
T ss_pred ccccccCCcccccccccccC---------cccccCCcccccccccchhcccccccCCCCCccccccccCCccccccchhh
Confidence 33333444578888887543 36889999999999998875 555666666555432222222233456677
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 116 IEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 116 ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
...++..+...|-.+..+|.-.....+..|+...
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (524)
T COG5391 101 FRSLRDMLSLLLPTSLQPPLSTSHTILDYFISST 134 (524)
T ss_pred hhhhhhhhhhcCchhcCCCCcccccchHhHhhhc
Confidence 7788888999998888888877777787777654
No 83
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=48.62 E-value=29 Score=20.35 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=13.8
Q ss_pred cccCCCCCCcccccCCc
Q psy10869 88 IVVPPLPGKAWKRQMPF 104 (163)
Q Consensus 88 ~~lP~lP~K~~~~~~~~ 104 (163)
..+|+||++..+..++.
T Consensus 5 ~~lP~fP~~HTY~~Tp~ 21 (51)
T PF10406_consen 5 DWLPPFPPPHTYKRTPI 21 (51)
T ss_pred ccCCCCCCCcccccCCC
Confidence 35899999999887655
No 84
>KOG1329|consensus
Probab=45.57 E-value=19 Score=33.43 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=63.2
Q ss_pred CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCC---CCC------CcccccCCcCCCCCCCCH
Q psy10869 44 KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPP---LPG------KAWKRQMPFRGDDGIFEE 113 (163)
Q Consensus 44 ~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~---lP~------K~~~~~~~~~~~~~~~~~ 113 (163)
..+-..|+++...+ .-.|.|.+-+..|..||..|... -+..+|. ++. |.... ..+.
T Consensus 63 ~~~~~~y~v~L~hG-----~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~---------~~~~ 128 (887)
T KOG1329|consen 63 VPSSGSYTVELLHG-----TLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGP---------RSSL 128 (887)
T ss_pred ccCCcceeeeeecC-----cEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCc---------cCCc
Confidence 34567888888765 66899999999999999998653 2122221 111 11100 0111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccc
Q psy10869 114 EFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDK 153 (163)
Q Consensus 114 ~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~ 153 (163)
.-.-+++..++.||..++..+.+++.....+||+.+-+..
T Consensus 129 ~~~~~~~~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f 168 (887)
T KOG1329|consen 129 NSSMEKRKTLENYLTVVLHKARYRRTHVIYEFLENSRWSF 168 (887)
T ss_pred ccchhhhhhccchheeeechhhhhchhhhhcccccchhhh
Confidence 1113455669999999999999999999999988775443
No 85
>PF10908 DUF2778: Protein of unknown function (DUF2778); InterPro: IPR021225 This is a bacterial family of uncharacterised proteins.
Probab=43.72 E-value=27 Score=24.51 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=21.8
Q ss_pred ceEEEeehhHHHHHHHHHHhcCCcccC
Q psy10869 65 DSNVRRRYSDFEWLRNELERDSKIVVP 91 (163)
Q Consensus 65 ~~~V~RRYsdF~~L~~~L~~~~~~~lP 91 (163)
.=.+..+++||..|++.|.......+|
T Consensus 92 GCIT~~~~~dF~~lr~~l~~~~~~~Vp 118 (120)
T PF10908_consen 92 GCITFKSYSDFLRLRKALLSTPTVVVP 118 (120)
T ss_pred ccEeecCHHHHHHHHHHHhcCCCCcCC
Confidence 345778999999999999987666665
No 86
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=41.63 E-value=19 Score=19.59 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCccCChhh
Q psy10869 122 GLETFINKIAGHPLAQNERCL 142 (163)
Q Consensus 122 ~Le~fL~~l~~~p~l~~s~~l 142 (163)
.|..||+.|..+|.|...+++
T Consensus 3 ~l~~Yl~ei~~~~LLt~eeE~ 23 (37)
T PF00140_consen 3 SLRLYLKEIGRYPLLTAEEEI 23 (37)
T ss_dssp HHHHHHHHHHHS-EETTHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHH
Confidence 478899999999998887654
No 87
>PF14980 TIP39: TIP39 peptide
Probab=33.78 E-value=49 Score=19.30 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHc
Q psy10869 118 DRRKGLETFINKIAG 132 (163)
Q Consensus 118 ~Rr~~Le~fL~~l~~ 132 (163)
+|++-|+.|++.|+-
T Consensus 34 ER~~WLnSYMqkLLv 48 (51)
T PF14980_consen 34 ERQKWLNSYMQKLLV 48 (51)
T ss_pred HHHHHHHHHHHHHHc
Confidence 588888999998863
No 88
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=30.95 E-value=43 Score=17.13 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q psy10869 119 RRKGLETFINK 129 (163)
Q Consensus 119 Rr~~Le~fL~~ 129 (163)
|+.-|+.||+.
T Consensus 4 RK~SLqRFLeK 14 (27)
T PF09425_consen 4 RKASLQRFLEK 14 (27)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666653
No 89
>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8. The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo
Probab=29.01 E-value=95 Score=18.28 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=13.7
Q ss_pred cccCCCCCCcccccCCc
Q psy10869 88 IVVPPLPGKAWKRQMPF 104 (163)
Q Consensus 88 ~~lP~lP~K~~~~~~~~ 104 (163)
..+|+||+...+..++.
T Consensus 5 ~~LP~FP~~HTY~~Tp~ 21 (54)
T cd08049 5 SWLPPFPDPHTYKRTPT 21 (54)
T ss_pred cCCCCCCCchhhccCCC
Confidence 46899999999877654
No 90
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=27.43 E-value=58 Score=20.21 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCCc
Q psy10869 121 KGLETFINKIAGHPLA 136 (163)
Q Consensus 121 ~~Le~fL~~l~~~p~l 136 (163)
+.||.||+++..++.|
T Consensus 3 ~klq~yLr~~f~n~~i 18 (63)
T PF11324_consen 3 KKLQAYLRRTFGNPGI 18 (63)
T ss_pred HHHHHHHHHHhCCCce
Confidence 4689999999988744
No 91
>KOG3540|consensus
Probab=23.87 E-value=72 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.479 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHcCCCccC--ChhhhcccCCC
Q psy10869 117 EDRRKGLETFINKIAGHPLAQN--ERCLHMFLQEP 149 (163)
Q Consensus 117 e~Rr~~Le~fL~~l~~~p~l~~--s~~l~~FL~~~ 149 (163)
++||.+|+.||.+|..+|-=.. -.+|+.++...
T Consensus 326 drrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAE 360 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRPHRVLQALKRYVRAE 360 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 5688999999999999974322 23455555444
No 92
>PRK09750 hypothetical protein; Provisional
Probab=23.62 E-value=73 Score=19.51 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=21.4
Q ss_pred EEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHh
Q psy10869 49 DYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER 84 (163)
Q Consensus 49 ~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~ 84 (163)
.|.|+....-|..... -|-|||||-.-.+..++
T Consensus 3 kY~I~Ati~KpGg~P~---~W~r~s~~~mtk~ECeK 35 (64)
T PRK09750 3 MYKITATIEKEGGTPT---NWTRYSKSKLTKSECEK 35 (64)
T ss_pred eeEEEEEEECCCCCcc---ceeEecCCcCCHHHHHH
Confidence 5888877766643334 45699999765555444
No 93
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=20.98 E-value=91 Score=21.20 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCccCChhhh
Q psy10869 122 GLETFINKIAGHPLAQNERCLH 143 (163)
Q Consensus 122 ~Le~fL~~l~~~p~l~~s~~l~ 143 (163)
..+.|++.+...|.+..|+.++
T Consensus 18 lydAF~Q~l~~LP~la~S~~~K 39 (120)
T PRK15321 18 LYDAFYQRLLALPESASSETLK 39 (120)
T ss_pred HHHHHHHHHHhCCcccCcHHHH
Confidence 4578999999999999987665
Done!