Query psy10869
Match_columns 163
No_of_seqs 204 out of 1116
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 20:30:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2csk_A Sorting nexin 12; SNX12 100.0 1.6E-38 5.4E-43 230.6 13.8 141 23-163 4-144 (146)
2 1ocs_A Sorting nexin GRD19; so 100.0 4E-34 1.4E-38 210.7 12.3 134 11-152 17-161 (162)
3 3iq2_A Sorting nexin-7; SNX7, 100.0 1.7E-32 5.8E-37 197.1 12.0 123 26-153 5-128 (138)
4 2i4k_A Sorting nexin-1, SNX1; 100.0 1.8E-31 6.3E-36 189.0 5.0 120 30-149 4-127 (128)
5 3hpc_X SNX5 protein; sprting n 100.0 2.1E-28 7.2E-33 179.5 10.8 126 25-155 7-156 (161)
6 3lui_A Sorting nexin-17, SNX17 100.0 6.5E-29 2.2E-33 173.2 7.1 107 28-152 2-111 (115)
7 1xte_A Serine/threonine-protei 100.0 3.9E-28 1.3E-32 177.3 10.7 112 27-151 5-116 (154)
8 3p0c_A Nischarin; structural g 99.9 9.7E-28 3.3E-32 170.7 7.8 111 30-154 16-129 (130)
9 1kmd_A VAM7P, vacuolar morphog 99.9 4.2E-27 1.4E-31 164.5 8.7 109 28-151 4-116 (117)
10 4az9_A Sorting nexin-24; prote 99.9 2.6E-26 8.8E-31 163.0 11.5 107 28-152 21-128 (129)
11 3dyt_A Sorting nexin-9; 3-heli 99.9 1.5E-27 5.1E-32 195.8 4.6 120 23-159 14-137 (366)
12 2v14_A Kinesin-like motor prot 99.9 4.4E-26 1.5E-30 162.9 11.1 102 28-143 4-107 (134)
13 4akv_A Sorting nexin-33; trans 99.9 1.6E-27 5.4E-32 196.8 3.6 117 26-159 38-157 (386)
14 1h6h_A Neutrophil cytosol fact 99.9 3E-26 1E-30 165.3 8.9 112 28-154 19-140 (143)
15 2ar5_A Phosphoinositide 3-kina 99.9 8.1E-25 2.8E-29 153.7 11.3 111 28-150 4-116 (121)
16 2ett_A Sorting nexin-22; PX do 99.9 3.7E-25 1.2E-29 156.9 8.8 93 43-153 28-120 (128)
17 1kq6_A NCF-1, P47PHOX, neutrop 99.9 6.4E-24 2.2E-28 152.8 11.8 110 28-153 5-125 (141)
18 2iwl_X Phosphatidylinositol-4- 99.9 1.4E-23 4.7E-28 150.9 7.7 116 27-154 18-135 (140)
19 2l73_A NADPH oxidase organizer 99.9 3.3E-22 1.1E-26 145.0 8.2 113 30-154 9-132 (149)
20 2v6v_A BUD emergence protein 1 99.9 3.4E-21 1.2E-25 140.6 12.3 106 29-153 18-139 (156)
21 2wwe_A Phosphoinositide-3-kina 99.8 6.2E-19 2.1E-23 123.0 6.4 108 21-148 17-126 (127)
22 2dyb_A Neutrophil cytosol fact 99.7 3.2E-18 1.1E-22 139.0 8.9 110 27-151 21-140 (341)
23 3zwl_E Eukaryotic translation 50.8 5.9 0.0002 22.6 1.1 23 109-131 7-29 (50)
24 3ogl_Q JAZ1 incomplete degron 41.7 18 0.00063 16.7 1.8 12 118-129 5-16 (21)
25 3twe_A Alpha4H; unknown functi 34.1 29 0.00099 16.4 1.9 13 72-84 7-19 (27)
26 3ogk_Q JAZ1 incomplete degron 30.4 18 0.00062 16.9 0.8 8 114-121 7-14 (22)
27 1s28_A ORF1; type III chaperon 23.5 50 0.0017 22.5 2.3 23 73-97 5-27 (132)
No 1
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=230.63 Aligned_cols=141 Identities=76% Similarity=1.259 Sum_probs=130.3
Q ss_pred hcCCCCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccC
Q psy10869 23 YAAPANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQM 102 (163)
Q Consensus 23 ~~~~~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~ 102 (163)
.+.+.+++.|.|.+++++++|+++|++|.|+++++.+.+....|.|.||||||.+||+.|.+.+++.+|+||+|.++..+
T Consensus 4 ~~~~~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iP~lP~K~~~~~~ 83 (146)
T 2csk_A 4 GSSGSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQL 83 (146)
T ss_dssp CCCCSCCCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSSSSCCCCCCSCCCCCCSS
T ss_pred CCCCCCcEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhccCCcCCCCCCCchhhcc
Confidence 34678889999999999999999999999999998888888999999999999999999998888899999999998655
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCCCCCCcCC
Q psy10869 103 PFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYVPGKIRNT 163 (163)
Q Consensus 103 ~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~~~~~ 163 (163)
++.+..+++++++||+||++||.||+.|++||.+++++.|+.||+.++++++|.+||++++
T Consensus 84 ~~~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~~~~~ 144 (146)
T 2csk_A 84 PFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKSGPS 144 (146)
T ss_dssp TTCCCSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCCSSCCCCSCSSC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCchhhhhccCccCCC
Confidence 5555557899999999999999999999999999999999999999999999999999985
No 2
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=100.00 E-value=4e-34 Score=210.70 Aligned_cols=134 Identities=45% Similarity=0.768 Sum_probs=111.9
Q ss_pred cccccccchhhhhcCCCCceEEEecCcEEe---c-CCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-
Q psy10869 11 RLHVKKQTLDDAYAAPANFLEIDVVNPITH---G-VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD- 85 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~v~V~~~~~~---~-~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~- 85 (163)
....+.+++++.|+.+.+++.|.|.|++++ + +|+++|++|.|+++++.+.+....|.|+||||||.+||+.|.+.
T Consensus 17 ~~~~~~~~~~~~~~~p~~~l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~ 96 (162)
T 1ocs_A 17 SKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEI 96 (162)
T ss_dssp -------------CCSSCCEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCcCcCChhhhccCCCCeEEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHh
Confidence 455667889999999999999999999999 7 77899999999999988888889999999999999999999874
Q ss_pred -----CCcccCCCCCCcccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccC-ChhhhcccCCCccc
Q psy10869 86 -----SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQN-ERCLHMFLQEPTID 152 (163)
Q Consensus 86 -----~~~~lP~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~-s~~l~~FL~~~~~~ 152 (163)
+++.+|+||+|.+++ +++++++||+||++||.||+.|+.||.|++ ++.|+.||+.++++
T Consensus 97 ~~~~~p~~~iP~lP~K~~~~--------~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~~~ 161 (162)
T 1ocs_A 97 SMLNHPKVMVPHLPGKILLS--------NRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFV 161 (162)
T ss_dssp HHTTCTTCCCCCCTTCCCSS--------CTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSSCC
T ss_pred ccccCCCccCCCCCCCcccc--------cCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcccC
Confidence 578999999999863 457999999999999999999999999998 99999999988654
No 3
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=197.12 Aligned_cols=123 Identities=34% Similarity=0.595 Sum_probs=107.9
Q ss_pred CCCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCc
Q psy10869 26 PANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPF 104 (163)
Q Consensus 26 ~~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~ 104 (163)
....++|.|+||+++++|+++|++|.|+++++.+.|....|.|+||||||.+||+.|.+. +++.+|+||+|.+++.+
T Consensus 5 d~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~-- 82 (138)
T 3iq2_A 5 DLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGM-- 82 (138)
T ss_dssp CCCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----C--
T ss_pred ccceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccc--
Confidence 445689999999999999999999999999988888889999999999999999999875 67899999999987421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccc
Q psy10869 105 RGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDK 153 (163)
Q Consensus 105 ~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~ 153 (163)
.+++++++||+||++||.||+.|++||.|++|+.|+.||+.++...
T Consensus 83 ---~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~~~ 128 (138)
T 3iq2_A 83 ---VERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWEL 128 (138)
T ss_dssp ---CGGGCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCBC-
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCCCc
Confidence 2457999999999999999999999999999999999999886554
No 4
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.97 E-value=1.8e-31 Score=188.99 Aligned_cols=120 Identities=31% Similarity=0.573 Sum_probs=106.0
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcC---CcccCCCCCCcccccCCc-C
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDS---KIVVPPLPGKAWKRQMPF-R 105 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~---~~~lP~lP~K~~~~~~~~-~ 105 (163)
++|.|++++++++|+++|++|.|+++++.+.+....|.|+||||||.+||+.|.+.+ +..+|+||+|.+++.+.. .
T Consensus 4 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~~ 83 (128)
T 2i4k_A 4 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 83 (128)
T ss_dssp CCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCCC
T ss_pred EEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhhh
Confidence 789999999999999999999999998888888899999999999999999999863 478999999999864321 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCC
Q psy10869 106 GDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEP 149 (163)
Q Consensus 106 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 149 (163)
|..+++++++||+||++||.||+.|++||.|++|+.|+.||+.+
T Consensus 84 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 84 GKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 22235689999999999999999999999999999999999876
No 5
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.95 E-value=2.1e-28 Score=179.53 Aligned_cols=126 Identities=25% Similarity=0.490 Sum_probs=103.7
Q ss_pred CCCCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHh---cCCcccCCCCCCccccc
Q psy10869 25 APANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER---DSKIVVPPLPGKAWKRQ 101 (163)
Q Consensus 25 ~~~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~---~~~~~lP~lP~K~~~~~ 101 (163)
.+.+.++|+|.||.++++ |++|.|+++++.|.|....|.|+||||||.|||+.|.+ ++++.+||||+|..++.
T Consensus 7 ~~~~~l~i~V~dp~~~~~----~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~ 82 (161)
T 3hpc_X 7 NVDPSLQIDIPDALSERD----KVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDG 82 (161)
T ss_dssp CCSCSEEEEEEEEEEETT----EEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHH
T ss_pred CCCCeEEEEECCCeEecC----CEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccc
Confidence 467789999999999875 89999999999999999999999999999999999986 47899999999998641
Q ss_pred C--Cc----CCCCCC------------CCHHHHHHHH---HHHHHHHHHHHcCCCccCChhhhcccCCCcccccC
Q psy10869 102 M--PF----RGDDGI------------FEEEFIEDRR---KGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNY 155 (163)
Q Consensus 102 ~--~~----~~~~~~------------~~~~~ie~Rr---~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~ 155 (163)
. ++ .| .++ ++++|||+|| .+||.||++|+.||.|++++.|+.||+.++.=..|
T Consensus 83 ~~~K~~~~g~~-~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~dl~~~ 156 (161)
T 3hpc_X 83 PREKMQKLGEG-EGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVR 156 (161)
T ss_dssp HHHHHHHHHHT-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSCSCC-
T ss_pred hhhhhhccccc-ccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCccchhh
Confidence 0 00 00 011 3568999754 45999999999999999999999999988543334
No 6
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.95 E-value=6.5e-29 Score=173.24 Aligned_cols=107 Identities=21% Similarity=0.397 Sum_probs=91.6
Q ss_pred CceEEEecCcEEecC--CCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCc
Q psy10869 28 NFLEIDVVNPITHGV--AKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPF 104 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~--g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~ 104 (163)
+.++|+|++++..++ |+++|++|.|++. ..|.|+||||||.+||+.|.+. ++..+|+||+|.+++
T Consensus 2 ~~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~--------~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~---- 69 (115)
T 3lui_A 2 NAMHFSIPETESRSGDSGGSAYVAYNIHVN--------GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS---- 69 (115)
T ss_dssp ---CEEEEEEEEEC-----CCEEEEEEEET--------TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC----
T ss_pred CcEEEEECCeEEecCCCCCCCEEEEEEEEC--------CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC----
Confidence 347899999999875 5689999999873 4799999999999999999886 567799999999863
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCccc
Q psy10869 105 RGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTID 152 (163)
Q Consensus 105 ~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~ 152 (163)
+++++||+||++||.||+.|++||.+++|+.|+.||+.++.+
T Consensus 70 ------~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~~ 111 (115)
T 3lui_A 70 ------LTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQE 111 (115)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHcChhhhcChHHHHHHCcCHHh
Confidence 589999999999999999999999999999999999877543
No 7
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.95 E-value=3.9e-28 Score=177.31 Aligned_cols=112 Identities=28% Similarity=0.418 Sum_probs=98.6
Q ss_pred CCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCC
Q psy10869 27 ANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRG 106 (163)
Q Consensus 27 ~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~ 106 (163)
.+.++|+|++++++++|+++|++|.|+|+++ ...|.|+||||||.+||+.|.+.++...++||+|.+++
T Consensus 5 ~~~~~v~I~~~~~~~~~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP~K~~~g------ 73 (154)
T 1xte_A 5 ESCPSVSIPSSDEHREKKKRFTVYKVLVSVG-----RSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFG------ 73 (154)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSS------
T ss_pred CCCCEEEECCcEEEecCCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHHCCCCcccCCCccccC------
Confidence 3457899999999988889999999999875 67899999999999999999986443345699999873
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcc
Q psy10869 107 DDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTI 151 (163)
Q Consensus 107 ~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~ 151 (163)
.++++++||+||.+||.||+.|+.||.++.++.|+.||+.++.
T Consensus 74 --~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~ 116 (154)
T 1xte_A 74 --DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSP 116 (154)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCG
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCC
Confidence 2679999999999999999999999999999999999988743
No 8
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.94 E-value=9.7e-28 Score=170.67 Aligned_cols=111 Identities=25% Similarity=0.311 Sum_probs=93.2
Q ss_pred eEEEecCcEEec---CCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCC
Q psy10869 30 LEIDVVNPITHG---VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRG 106 (163)
Q Consensus 30 l~v~V~~~~~~~---~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~ 106 (163)
..|+|++..... +.+++|++|.|+|.++ ...|.|+||||||.+||+.|.+.++..+|+||+|.++
T Consensus 16 ~~v~ips~~v~I~~~~~~~~y~~Y~I~v~~~-----~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP~K~~~------- 83 (130)
T 3p0c_A 16 ENLYFQSMEARVVGSELVDTYTVYIIQVTDG-----SHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKII------- 83 (130)
T ss_dssp -CCCEECCEEEEEEEECSSSSCEEEEEEECS-----SCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCCCCCCC-------
T ss_pred ceeEeeeeEEEEEeccccCCEEEEEEEEEEC-----CeEEEEEehHHHHHHHHHHHHHHcCCCCCCCCCcccc-------
Confidence 445555544422 2257899999999874 6789999999999999999999877778999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCccccc
Q psy10869 107 DDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKN 154 (163)
Q Consensus 107 ~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~ 154 (163)
+++++++||+||++||.||+.|+++|.++.++.|..||+.+++|..
T Consensus 84 --g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~~~ 129 (130)
T 3p0c_A 84 --GKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFYEIN 129 (130)
T ss_dssp --SCCCSCSHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSCTTC--
T ss_pred --ccCCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCCccccc
Confidence 3578999999999999999999999999999999999999987753
No 9
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.94 E-value=4.2e-27 Score=164.47 Aligned_cols=109 Identities=28% Similarity=0.429 Sum_probs=92.9
Q ss_pred CceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccC-CCCCCcccccCCcCC
Q psy10869 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVP-PLPGKAWKRQMPFRG 106 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP-~lP~K~~~~~~~~~~ 106 (163)
+.++|+|+++++ .++|++|.|++ ..|.|+||||||.+||+.|.+.++..+| +||+|.++....+
T Consensus 4 ~~~~v~I~~~~~----~~~~~~Y~I~v---------~~~~V~RRYsdF~~L~~~L~~~~~~~~P~~lP~K~~~~~~~~-- 68 (117)
T 1kmd_A 4 EKLRIKVDDVKI----NPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRW-- 68 (117)
T ss_dssp CCCCCEEEEEEE----CSSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTT--
T ss_pred CCEEEEECCcee----cCCEEEEEEEE---------ceEEEEechHHHHHHHHHHHHHcCccCCCCCCCCCEeccccc--
Confidence 457899999988 26899999997 2799999999999999999998778899 9999998631111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCCc---cCChhhhcccCCCcc
Q psy10869 107 DDGIFEEEFIEDRRKGLETFINKIAGHPLA---QNERCLHMFLQEPTI 151 (163)
Q Consensus 107 ~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l---~~s~~l~~FL~~~~~ 151 (163)
..+++++++||+||++||.||+.|++||.+ +++++|..||+.++.
T Consensus 69 ~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~~ 116 (117)
T 1kmd_A 69 QRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKP 116 (117)
T ss_dssp CCCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCCC
Confidence 125789999999999999999999999965 789999999998753
No 10
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=163.04 Aligned_cols=107 Identities=22% Similarity=0.375 Sum_probs=90.5
Q ss_pred CceEEEecCcEEecCC-CcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCC
Q psy10869 28 NFLEIDVVNPITHGVA-KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRG 106 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g-~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~ 106 (163)
..++|.|+++...+.+ +++|++|.|+|..+ +..|.|+||||||.+||+.|.+.++ +|+||+|.+
T Consensus 21 ~~~~V~Ip~~~~~~~~~~k~y~vY~I~v~~~-----~~~w~V~RRYsdF~~L~~~L~~~~~--~p~lP~K~~-------- 85 (129)
T 4az9_A 21 QSMEVYIPSFRYEESDLERGYTVFKIEVLMN-----GRKHFVEKRYSEFHALHKKLKKCIK--TPEIPSKHV-------- 85 (129)
T ss_dssp CCCEEEEEEEEEECCTTSCCEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHTTTSC--CCCCCCSCC--------
T ss_pred ceeEEEECcEEEEecCCCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHhCC--CCCCCcccc--------
Confidence 3478999988887766 57899999999875 6789999999999999999998653 688999875
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCccc
Q psy10869 107 DDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTID 152 (163)
Q Consensus 107 ~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~ 152 (163)
+++++++||+||.+||.||+.|+.+|.+. +++|.+||+.+.++
T Consensus 86 --~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~~p 128 (129)
T 4az9_A 86 --RNWVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDFLNVRHLP 128 (129)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC----
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCCCCCC
Confidence 35799999999999999999999999875 78999999987654
No 11
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.94 E-value=1.5e-27 Score=195.79 Aligned_cols=120 Identities=28% Similarity=0.581 Sum_probs=96.4
Q ss_pred hcCCCCceEEEecCcEEec--CCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CC-cccCCCCCCcc
Q psy10869 23 YAAPANFLEIDVVNPITHG--VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SK-IVVPPLPGKAW 98 (163)
Q Consensus 23 ~~~~~~~l~v~V~~~~~~~--~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~-~~lP~lP~K~~ 98 (163)
..++...+.|.|.||++++ +|.++|++|.|++++ ..|.|+||||||.+||+.|... ++ +.+|+||+|.+
T Consensus 14 w~~~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~ 86 (366)
T 3dyt_A 14 WVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTN-------TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQV 86 (366)
T ss_dssp ECCCSSCCCEEEECGGGSSSCCCCCSSCEEEEEETT-------CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC----
T ss_pred ccCCCCCeEEEEcCceeecCCCCCcCeEEEEEEEec-------CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCcc
Confidence 4567788999999999987 678899999999863 4799999999999999999874 77 89999999998
Q ss_pred cccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCCCCC
Q psy10869 99 KRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYVPGK 159 (163)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~ 159 (163)
+ |+++++||++||++||.||+.|+.||.|++|+.|+.||+.++ +..|..++
T Consensus 87 ~---------g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~-~~~w~~~~ 137 (366)
T 3dyt_A 87 T---------GRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRD-EKEWKTGK 137 (366)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSS-HHHHHHHH
T ss_pred c---------CCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCc-hhhHHHHh
Confidence 6 457999999999999999999999999999999999999863 56675544
No 12
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.93 E-value=4.4e-26 Score=162.86 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=91.4
Q ss_pred CceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCC
Q psy10869 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRG 106 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~ 106 (163)
+.++|+|++++..++|+++|++|.|++.++ ...|.|+||||||.+||+.|.+. +.+.+|+||+|.++
T Consensus 4 ~~i~VsIp~~~~~~~~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~------- 71 (134)
T 2v14_A 4 DPIKISIPRYVLCGQGKDAHFEFEVKITVL-----DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLF------- 71 (134)
T ss_dssp SCEEEEEEEEEEESSTTSCEEEEEEEEEET-----TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSS-------
T ss_pred CCEEEEECcEEEEecCCCCEEEEEEEEEEC-----CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccc-------
Confidence 458999999999988889999999999875 67999999999999999999986 56789999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCC-ccCChhhh
Q psy10869 107 DDGIFEEEFIEDRRKGLETFINKIAGHPL-AQNERCLH 143 (163)
Q Consensus 107 ~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~-l~~s~~l~ 143 (163)
+++++++||+||.+||.||+.|++||. +++|+.+.
T Consensus 72 --~~~~~~~ie~Rr~~Le~yL~~ll~~~~~l~~sp~~l 107 (134)
T 2v14_A 72 --GNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHI 107 (134)
T ss_dssp --CTTSHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTCT
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHhChHhhcCCHHHH
Confidence 457999999999999999999999986 88888543
No 13
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.93 E-value=1.6e-27 Score=196.80 Aligned_cols=117 Identities=32% Similarity=0.541 Sum_probs=90.3
Q ss_pred CCCceEEEecCcEEec--CCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHh-cCCcccCCCCCCcccccC
Q psy10869 26 PANFLEIDVVNPITHG--VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER-DSKIVVPPLPGKAWKRQM 102 (163)
Q Consensus 26 ~~~~l~v~V~~~~~~~--~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~-~~~~~lP~lP~K~~~~~~ 102 (163)
+...+.|.|.||++++ +|.++|++|.|++++ ..|.|+||||||.+||+.|.+ ++++.+|+||+|.++
T Consensus 38 ~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~--- 107 (386)
T 4akv_A 38 NPHPFACSVEDPTKQTKFKGIKSYISYKLTPTH-------AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQAT--- 107 (386)
T ss_dssp CSSCCCEEEECC------------CCEEEEETT-------SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC-----
T ss_pred CCCCeEEEEcCceEecCCCCCcCeEEEEEEEEe-------CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCccc---
Confidence 3456899999999987 678899999999863 379999999999999999976 477899999999986
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCccCChhhhcccCCCcccccCCCCC
Q psy10869 103 PFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQEPTIDKNYVPGK 159 (163)
Q Consensus 103 ~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~ 159 (163)
++++++||++||++||.||+.|+.||.|++|+.|+.||+.++ +..|..++
T Consensus 108 ------g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~-~~~w~~~~ 157 (386)
T 4akv_A 108 ------GRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLD-DKQWKMGK 157 (386)
T ss_dssp ----------CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCC-SHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCC-hhhHHHhh
Confidence 457999999999999999999999999999999999999864 57776554
No 14
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.93 E-value=3e-26 Score=165.28 Aligned_cols=112 Identities=18% Similarity=0.326 Sum_probs=96.0
Q ss_pred CceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-C--------CcccCCCCCCcc
Q psy10869 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-S--------KIVVPPLPGKAW 98 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~--------~~~lP~lP~K~~ 98 (163)
..++|+|.+++.... .+.|++|.|+|++. ++..|.|+||||||.+||..|.+. + ...+|+||+|.+
T Consensus 19 ~~i~v~I~~~e~~~~-~~~~~vY~I~v~~~----~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~ 93 (143)
T 1h6h_A 19 VAISANIADIEEKRG-FTSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVY 93 (143)
T ss_dssp CEEEEEEEEEEEECS-SSCEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCC
T ss_pred CeEEEEEcCccccCC-CCCeEEEEEEEEEc----CCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcc
Confidence 458999999886543 46899999999865 367999999999999999999885 3 236899999998
Q ss_pred cccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC-ccCChhhhcccCCCccccc
Q psy10869 99 KRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPL-AQNERCLHMFLQEPTIDKN 154 (163)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~-l~~s~~l~~FL~~~~~~~~ 154 (163)
++ + +.+++|+|+.+||.||+.|+++|. +++|+.+..||+..+.|..
T Consensus 94 ~~---------~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~d~~ 140 (143)
T 1h6h_A 94 VG---------V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSE 140 (143)
T ss_dssp SS---------C-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHHT
T ss_pred cC---------c-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCccccc
Confidence 63 3 899999999999999999999996 9999999999998866544
No 15
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.92 E-value=8.1e-25 Score=153.73 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=93.9
Q ss_pred CceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcCC
Q psy10869 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRG 106 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~~ 106 (163)
..++|.|.++++...+++.|+ |.|+|..... ...|.|+|||+||.+||..|.+. +...+|+||+|.+++.
T Consensus 4 ~i~~v~V~~~ek~~~~~k~y~-Y~I~v~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~----- 74 (121)
T 2ar5_A 4 RIKEVSVFTYHKKYNPDKHYI-YVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGR----- 74 (121)
T ss_dssp SEEEEEEEEEECCCSSSSCCE-EEEEEEETTC---SSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSS-----
T ss_pred eEEEEEECcEEEEecCCCcEE-EEEEEEECCC---ceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCc-----
Confidence 457899999999876644455 9999987631 26899999999999999999886 5678999999998742
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcC-CCccCChhhhcccCCCc
Q psy10869 107 DDGIFEEEFIEDRRKGLETFINKIAGH-PLAQNERCLHMFLQEPT 150 (163)
Q Consensus 107 ~~~~~~~~~ie~Rr~~Le~fL~~l~~~-p~l~~s~~l~~FL~~~~ 150 (163)
..+.+++|+|+.+||.||+.|++. |.++.|+.+..||++..
T Consensus 75 ---~~~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~ 116 (121)
T 2ar5_A 75 ---THIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSH 116 (121)
T ss_dssp ---SSTTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSC
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCcc
Confidence 235789999999999999999987 59999999999999874
No 16
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.92 E-value=3.7e-25 Score=156.90 Aligned_cols=93 Identities=27% Similarity=0.390 Sum_probs=82.8
Q ss_pred CCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCCcccCCCCCCcccccCCcCCCCCCCCHHHHHHHHHH
Q psy10869 43 AKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKG 122 (163)
Q Consensus 43 g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~lP~lP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~ 122 (163)
++++|++|.|+|.++ ...|.|.||||||.+||+.|.+.++ +|+||+|.++ ++++++||+||.+
T Consensus 28 ~~~~~~~Y~I~v~~~-----~~~~~V~RRYSdF~~Lh~~L~~~~~--iP~lP~K~~~----------~~~~~~ie~Rr~~ 90 (128)
T 2ett_A 28 PEKSHMVFRVEVLCS-----GRRHTVPRRYSEFHALHKRIKKLYK--VPDFPSKRLP----------NWRTRGLEQRRQG 90 (128)
T ss_dssp SSCCCCEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHTTSS--CCCCCCSSCC----------CSSSSCHHHHHHH
T ss_pred CCCCEEEEEEEEEEC-----CcEEEEECCHHHHHHHHHHHHHHCC--CCCCCCCccC----------CCCHHHHHHHHHH
Confidence 468999999999875 5789999999999999999999764 8999999963 4689999999999
Q ss_pred HHHHHHHHHcCCCccCChhhhcccCCCcccc
Q psy10869 123 LETFINKIAGHPLAQNERCLHMFLQEPTIDK 153 (163)
Q Consensus 123 Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~ 153 (163)
||.||+.|+.+|.+. ++.|..||+.+.++.
T Consensus 91 Le~yL~~ll~~p~~~-s~~l~~FL~~~~~~~ 120 (128)
T 2ett_A 91 LEAYIQGILYLNQEV-PKELLEFLRLRHFPT 120 (128)
T ss_dssp HHHHHHHHHHHSSSS-CHHHHHHHTCTTCCC
T ss_pred HHHHHHHHHhCchhc-CHHHHHhcCCccCCC
Confidence 999999999999877 699999999887644
No 17
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.91 E-value=6.4e-24 Score=152.81 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=93.8
Q ss_pred CceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC-c---------ccCCCCCCc
Q psy10869 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK-I---------VVPPLPGKA 97 (163)
Q Consensus 28 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~-~---------~lP~lP~K~ 97 (163)
-..+|.|.++++.+.+ .+|++|.|+|+.. ++..|.|+|||+||.+||..|.+.++ . .+|+||+|.
T Consensus 5 ~i~~v~V~~~ek~~~~-~~~~~Y~I~V~~~----~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~ 79 (141)
T 1kq6_A 5 FIRHIALLGFEKRFVP-SQHYVYMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPK 79 (141)
T ss_dssp CEEEEEEEEEEEECSS-SCEEEEEEEEEET----TCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCC
T ss_pred eEEEEEEccEEEecCC-CCeEEEEEEEEEc----CCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCcc
Confidence 3478999999998765 4577799999875 25789999999999999999988532 2 689999999
Q ss_pred ccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCCCcccc
Q psy10869 98 WKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQEPTIDK 153 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~~~~~~ 153 (163)
+++ +.+++|+|+.+||.||+.|+++| .+++|+.+..||+....|.
T Consensus 80 ~~~-----------~~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~d~ 125 (141)
T 1kq6_A 80 WFD-----------GQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDL 125 (141)
T ss_dssp CCC-----------SHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHH
T ss_pred ccC-----------CHHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcccc
Confidence 863 48999999999999999999987 5999999999999876554
No 18
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=150.92 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=90.0
Q ss_pred CCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhc-CCcccCCCCCCcccccCCcC
Q psy10869 27 ANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFR 105 (163)
Q Consensus 27 ~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~lP~lP~K~~~~~~~~~ 105 (163)
...+.|.|.+.++...+ .+|++|.|+|.... ....|.|.|||+||.+||.+|.+. +...+|+||+|.+++.
T Consensus 18 ~~i~~v~I~~~ek~~~~-~k~~~Y~I~V~~~~---~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~---- 89 (140)
T 2iwl_X 18 GRIKEVSVFTYHKKYNP-DKHYIYVVRILREG---QIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGR---- 89 (140)
T ss_dssp CCEEEEEEEEEEECCSS-SSCEEEEEEEEETT---CSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC----------
T ss_pred CeeEEEEECcEEEEecC-CCeEEEEEEEEECC---CceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCc----
Confidence 45578999999988765 45667999998762 125899999999999999999886 5578999999998742
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCccCChhhhcccCCCccccc
Q psy10869 106 GDDGIFEEEFIEDRRKGLETFINKIAGH-PLAQNERCLHMFLQEPTIDKN 154 (163)
Q Consensus 106 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~~-p~l~~s~~l~~FL~~~~~~~~ 154 (163)
..+.+++|+|+.+||.||+.|+++ +.+++|+.+..||+....|.+
T Consensus 90 ----~~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~~~D~~ 135 (140)
T 2iwl_X 90 ----THIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPLLRDEK 135 (140)
T ss_dssp --------CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCCTTTCC
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCCCCCcc
Confidence 235679999999999999999984 699999999999998765543
No 19
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=145.00 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=95.4
Q ss_pred eEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC----------cccCCCCCCccc
Q psy10869 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK----------IVVPPLPGKAWK 99 (163)
Q Consensus 30 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~----------~~lP~lP~K~~~ 99 (163)
..|.|.+.+++..+.+.|++|.|+|+.. ++..|.|+|||+||.+||..|++.++ ..+|.||+|.++
T Consensus 9 ~~v~v~~~ek~~~~~~~y~~Y~I~V~~~----d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~ 84 (149)
T 2l73_A 9 PRYPVSVQGAALVQIKRLQTFAFSVRWS----DGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLL 84 (149)
T ss_dssp CCCEEEEEEEEEECCSSSCEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCC
T ss_pred eEEEEEeeeEeecCCCceEEEEEEEEEe----CCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeee
Confidence 4678888888877778899999999875 36789999999999999999998532 358999999987
Q ss_pred ccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCCCccccc
Q psy10869 100 RQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQEPTIDKN 154 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~~~~~~~ 154 (163)
+. ..+.+++++|+.+|+.||+.|++.| .+++|+.+..||.....|.+
T Consensus 85 ~~--------~~~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~ 132 (149)
T 2l73_A 85 GR--------VGRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQPLDLE 132 (149)
T ss_dssp SS--------CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCCGGGGS
T ss_pred cc--------ccchHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCccccC
Confidence 42 2368899999999999999999887 59999999999988765543
No 20
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.86 E-value=3.4e-21 Score=140.63 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=88.3
Q ss_pred ceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC---------------cccCCC
Q psy10869 29 FLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK---------------IVVPPL 93 (163)
Q Consensus 29 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~---------------~~lP~l 93 (163)
.++|+|.+....+ ++++|.|+|... ++..|.|+|||+||.+||..|++.++ ..+|.|
T Consensus 18 ~~~~sI~~~~~~~----~~y~Y~I~V~~~----d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~L 89 (156)
T 2v6v_A 18 LVKASVESFGLED----EKYWFLVCCELS----NGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYI 89 (156)
T ss_dssp EEEEEEEEEEEET----TEEEEEEEEEET----TSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCC
T ss_pred ceEEEEeeEEEEC----CEEEEEEEEEEc----CCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCC
Confidence 3788888766653 355699999975 36799999999999999999998531 468999
Q ss_pred CCCcccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CccCChhhhcccCCCcccc
Q psy10869 94 PGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQEPTIDK 153 (163)
Q Consensus 94 P~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~~~~~~ 153 (163)
|+|.++ .+.+++|+|+.+|+.||+.|+..| .++.|+.+..||+....|-
T Consensus 90 P~K~~~-----------~~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~ 139 (156)
T 2v6v_A 90 PGPVPY-----------VTNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGF 139 (156)
T ss_dssp CCCCSS-----------CCHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSSSS
T ss_pred CCCccc-----------CCHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCccc
Confidence 999985 267999999999999999999865 6999999999999875543
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.76 E-value=6.2e-19 Score=122.99 Aligned_cols=108 Identities=13% Similarity=0.248 Sum_probs=87.1
Q ss_pred hhhcCCCCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC-cccCCCCCCccc
Q psy10869 21 DAYAAPANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK-IVVPPLPGKAWK 99 (163)
Q Consensus 21 ~~~~~~~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~-~~lP~lP~K~~~ 99 (163)
+-|........++|.+.++. +...|.|.|... ++..|.|.|||+||..||++|++.++ ..+|+||+|..+
T Consensus 17 ~~~~~~~~i~~~~v~~~~k~-----~~~~Yvi~V~~s----d~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll 87 (127)
T 2wwe_A 17 NLYFQSMSIERATILGFSKK-----SSNLYLIQVTHS----NNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHL 87 (127)
T ss_dssp CCCSCSSSEEEEEEEEEETT-----EEEEEEEEEEET----TSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSH
T ss_pred eeeecCCcEEEEEEEEEEec-----ccEEEEEEEEEe----CCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCcccc
Confidence 44555556678888876444 456699999886 36899999999999999999998754 579999999977
Q ss_pred ccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHc-CCCccCChhhhcccCC
Q psy10869 100 RQMPFRGDDGIFEEEFIEDRRKGLETFINKIAG-HPLAQNERCLHMFLQE 148 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~-~p~l~~s~~l~~FL~~ 148 (163)
+. ...-++ |+++||.||+.|++ .+.+.+|+.+..||..
T Consensus 88 ~~----------t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 88 PF----------TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HH----------HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred Cc----------CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 53 223344 99999999999999 5899999999999864
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=139.03 Aligned_cols=110 Identities=17% Similarity=0.304 Sum_probs=92.7
Q ss_pred CCceEEEecCcEEecCCCcCeeEEEEEEEEcCCCCCCCceEEEeehhHHHHHHHHHHhcCC---------cccCCCCCCc
Q psy10869 27 ANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK---------IVVPPLPGKA 97 (163)
Q Consensus 27 ~~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~---------~~lP~lP~K~ 97 (163)
...+.|+|.+.+++... .+|++|.|+|+.. ++..|.|+|||+||..||..|.+.++ ..+|.||+|.
T Consensus 21 ~~~~~v~I~~~~~~~~~-~~~~~Y~i~v~~~----~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~ 95 (341)
T 2dyb_A 21 DVAISANIADIEEKRGF-TSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKV 95 (341)
T ss_dssp TSEEEEEEEEEEEEESS-SEEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCC
T ss_pred CCcEEEEECCeEEecCC-CcEEEEEEEEEEc----CCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCcc
Confidence 34589999999887544 5799999999875 36789999999999999999988643 3589999999
Q ss_pred ccccCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC-ccCChhhhcccCCCcc
Q psy10869 98 WKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPL-AQNERCLHMFLQEPTI 151 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~-l~~s~~l~~FL~~~~~ 151 (163)
+++ + ..+++++|+..|+.||+.|+.+|. +..|+.+..||.....
T Consensus 96 ~~~---------~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~~ 140 (341)
T 2dyb_A 96 YVG---------V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY 140 (341)
T ss_dssp CCS---------C-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCHH
T ss_pred ccC---------c-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Confidence 863 2 678999999999999999999985 9999999999987643
No 23
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=50.81 E-value=5.9 Score=22.59 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy10869 109 GIFEEEFIEDRRKGLETFINKIA 131 (163)
Q Consensus 109 ~~~~~~~ie~Rr~~Le~fL~~l~ 131 (163)
+..+.++|+.||+.|+.|...-.
T Consensus 7 dsA~~evIe~RRrlLeEW~awRa 29 (50)
T 3zwl_E 7 DTAMRDLILHQRELLKQWTEYRE 29 (50)
T ss_dssp ----CCHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999987554
No 24
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=41.70 E-value=18 Score=16.65 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy10869 118 DRRKGLETFINK 129 (163)
Q Consensus 118 ~Rr~~Le~fL~~ 129 (163)
.|+..|+.||+.
T Consensus 5 aRk~SLqRFleK 16 (21)
T 3ogl_Q 5 ARRASLHRFLEK 16 (26)
T ss_pred hHHHHHHHHHHH
Confidence 477788888864
No 25
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.05 E-value=29 Score=16.43 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHh
Q psy10869 72 YSDFEWLRNELER 84 (163)
Q Consensus 72 YsdF~~L~~~L~~ 84 (163)
|.|...|+++|.+
T Consensus 7 ykeledlqerlrk 19 (27)
T 3twe_A 7 YKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777764
No 26
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=30.38 E-value=18 Score=16.89 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q psy10869 114 EFIEDRRK 121 (163)
Q Consensus 114 ~~ie~Rr~ 121 (163)
.|+|+|+.
T Consensus 7 RFleKRk~ 14 (22)
T 3ogk_Q 7 RFLEKRKD 14 (26)
T ss_pred HHHHHHHH
Confidence 34444443
No 27
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=23.50 E-value=50 Score=22.52 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhcCCcccCCCCCCc
Q psy10869 73 SDFEWLRNELERDSKIVVPPLPGKA 97 (163)
Q Consensus 73 sdF~~L~~~L~~~~~~~lP~lP~K~ 97 (163)
+.|..|-+.|.+.++ .|.+|.|+
T Consensus 5 n~fd~lid~laK~Y~--mP~~P~kk 27 (132)
T 1s28_A 5 NSFDRLIDGLAKDYG--MPGFPEKK 27 (132)
T ss_dssp HHHHHHHHHHHHHHC--CCBCCCCC
T ss_pred hhHHHHHHHHHHhcC--CCCCCccc
Confidence 468899999988775 89999993
Done!