RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10869
(163 letters)
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 192 bits (489), Expect = 5e-64
Identities = 107/141 (75%), Positives = 123/141 (87%)
Query: 21 DAYAAPANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRN 80
+ ++ +NFLEID+ NP T GV + R+T YEVRM+TNLP+FK K+S VRRRYSDFEWL+N
Sbjct: 2 SSGSSGSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKN 61
Query: 81 ELERDSKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNER 140
ELERDSKIVVPPLPGKA KRQ+PFRGD+GIFEE FIE+RR+GLE FINKIAGHPLAQNER
Sbjct: 62 ELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNER 121
Query: 141 CLHMFLQEPTIDKNYVPGKIR 161
CLHMFLQE ID+NYVPGK
Sbjct: 122 CLHMFLQEEAIDRNYVPGKSG 142
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur
genomics consortium, protein transport, transport; 1.70A
{Homo sapiens}
Length = 138
Score = 156 bits (395), Expect = 6e-50
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 25 APANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER 84
L I V P +H + + Y + KT+ F + + VRRRY DF WL+ +LE
Sbjct: 4 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE 63
Query: 85 D-SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLH 143
+++PPLP K + M R F ++FIE RRK L F+N+IA HP
Sbjct: 64 AHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDFK 118
Query: 144 MFLQEPTID 152
+FL +
Sbjct: 119 IFLTAQAWE 127
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
d.189.1.1 PDB: 1ocu_A*
Length = 162
Score = 154 bits (390), Expect = 7e-49
Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 19/158 (12%)
Query: 4 TTAEATKRLHVKKQTLDDAYAAPANFLEIDVVNPITHGV----AKKRYTDYEVRMKTNLP 59
+T ++ + + + YA P NFLEI+V NP TH +K +TDYE+ +TNLP
Sbjct: 10 STEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLP 69
Query: 60 VFKTKDSNVRRRYSDFEWLRNELERDS------KIVVPPLPGKAWKRQMPFRGDDGIFEE 113
F + S VRRRYSDFE+ R L ++ K++VP LPGK F
Sbjct: 70 SFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNR--------FSN 121
Query: 114 EFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQEPT 150
E IE+RR+GL T++ +AGHP L + L F++
Sbjct: 122 EVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
proline rich loop, protein transport; NMR {Homo sapiens}
Length = 128
Score = 147 bits (372), Expect = 1e-46
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD---S 86
L + + +P G Y Y+V +T+LP+F++K V+RR+SDF L +L +
Sbjct: 4 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 63
Query: 87 KIVVPPLPGKAWKRQMPFR-GDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMF 145
+VPP P K+ + G + EF+E RR LE ++ +I HP + + F
Sbjct: 64 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 123
Query: 146 LQE 148
L++
Sbjct: 124 LEK 126
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 121 bits (306), Expect = 3e-36
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 13/138 (9%)
Query: 26 PANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD 85
+ + + + H KKR+T Y+V + + V RRY++F+ L N L++
Sbjct: 4 KESCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEW-----FVFRRYAEFDKLYNSLKKQ 58
Query: 86 SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMF 145
+ +P K R F+ +FI+ RR GL FI + +P N + F
Sbjct: 59 FPAMALKIPAK---RIFGDN-----FDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAF 110
Query: 146 LQEPTIDKNYVPGKIRNT 163
LQ + P + +
Sbjct: 111 LQMDSPRHQSDPSEDEDE 128
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 121 bits (304), Expect = 7e-34
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 20/144 (13%)
Query: 11 RLHVKKQTLDDAYAAPANFLEIDVVNP--ITHGVAKKRYTDYEVRMKTNLPVFKTKDSNV 68
++ + + P + + V +P + K Y +Y++ + +V
Sbjct: 2 KIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNT-------NRSV 54
Query: 69 RRRYSDFEWLRNELERD--SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETF 126
RY F+WL L S I +P LP K G FEEEFI+ R + L+ +
Sbjct: 55 NHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT---------GRFEEEFIKMRMERLQAW 105
Query: 127 INKIAGHPLAQNERCLHMFLQEPT 150
+ ++ HP+ FL
Sbjct: 106 MTRMCRHPVISESEVFQQFLNFRD 129
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 111 bits (280), Expect = 1e-32
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 21/129 (16%)
Query: 27 ANFLEIDVVNP--ITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER 84
+N + + + Y Y + + L + R RYS L +L +
Sbjct: 1 SNAMHFSIPETESRSGDSGGSAYVAYNIHVNGVL--------HCRVRYSQLLGLHEQLRK 52
Query: 85 D-SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLH 143
+ V+P P K +E RR+ LE ++ + PL + +
Sbjct: 53 EYGANVLPAFPPKKLFS----------LTPAEVEQRREQLEKYMQAVRQDPLLGSSETFN 102
Query: 144 MFLQEPTID 152
FL+ +
Sbjct: 103 SFLRRAQQE 111
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
PI(4,5)P2, cell adhesion, protein transport; 1.47A
{Rattus norvegicus} PDB: 3hpb_A
Length = 161
Score = 112 bits (282), Expect = 1e-32
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 27/146 (18%)
Query: 28 NFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSK 87
L+ID+ + ++ + V KT LP F++ + +V R++ DF WL + L +
Sbjct: 10 PSLQIDIPDALSER----DKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTD 65
Query: 88 ---IVVPPLPGK------AWKRQMPFRGDDGIFEEEFIEDRRK--------------GLE 124
+++PP P K K Q G+ + +EEF + +++ E
Sbjct: 66 YAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHE 125
Query: 125 TFINKIAGHPLAQNERCLHMFLQEPT 150
F+ +++ HP+ +R H+FL+
Sbjct: 126 VFLQRLSSHPVLSKDRNFHVFLEYDQ 151
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 116 bits (291), Expect = 7e-32
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 20/140 (14%)
Query: 23 YAAPANFLEIDVVNPITHGVAK--KRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRN 80
+ A + V +P K K Y Y++ S V RRY F+WL N
Sbjct: 35 WKANPHPFACSVEDPTKQTKFKGIKSYISYKLT-------PTHAASPVYRRYKHFDWLYN 87
Query: 81 ELERD-SKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNE 139
L + I VP LP K G FEE+FIE R++ L +++ + HP+
Sbjct: 88 RLLHKFTVISVPHLPEKQAT---------GRFEEDFIEKRKRRLILWMDHMTSHPVLSQY 138
Query: 140 RCLHMFLQEPTIDKNYVPGK 159
FL DK + GK
Sbjct: 139 EGFQHFLSCLD-DKQWKMGK 157
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 95.3 bits (237), Expect = 3e-26
Identities = 30/143 (20%), Positives = 45/143 (31%), Gaps = 14/143 (9%)
Query: 12 LHVKKQTLDDAYAAPANFLEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRR 71
+H N + + YT Y +++ + V+ R
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMEARVVGSELVDTYTVYIIQVTDGSHEW-----TVKHR 55
Query: 72 YSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIA 131
YSDF L +L + KI LP K G +E R K LE ++ K+
Sbjct: 56 YSDFHDLHEKLVAERKIDKNLLPPKKII---------GKNSRSLVEKREKDLEVYLQKLL 106
Query: 132 GHPLAQNERCLHMFLQEPTIDKN 154
R L FL + N
Sbjct: 107 AAFPGVTPRVLAHFLHFHFYEIN 129
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 85.3 bits (211), Expect = 2e-22
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 44 KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVP-PLPGKAWKRQM 102
+Y Y V + +RYS+F L+ LERD +P P K
Sbjct: 16 NPKYVLYGVSTPNK---------RLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDR 66
Query: 103 PFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLA---QNERCLHMFLQ 147
++ + E I++RR GLE F+N++ ++ + FLQ
Sbjct: 67 RWQR--RYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQ 112
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 81.8 bits (202), Expect = 7e-21
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 30 LEIDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNEL-ERDSKI 88
++I + + G K + ++EV++ + V RRYS F + L + +++
Sbjct: 6 IKISIPRYVLCGQGKDAHFEFEVKITVLDETW-----TVFRRYSRFREMHKTLKLKYAEL 60
Query: 89 VVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQE 148
P K G +E I +RR LE ++ L LH+
Sbjct: 61 AALEFPPKKLF---------GNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHINKVG 111
Query: 149 PTIDKNYV 156
T+ K+ +
Sbjct: 112 LTLSKHTI 119
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
structural genomics,protein structure initiative PSI;
NMR {Homo sapiens}
Length = 128
Score = 77.6 bits (191), Expect = 3e-19
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 25/136 (18%)
Query: 26 PANFLEIDVVNPITHGVA-------KKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWL 78
+ LE++V P A +K + + V + + + V RRYS+F L
Sbjct: 4 HHHHLELEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSG-----RRHTVPRRYSEFHAL 58
Query: 79 RNELERDSKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQN 138
+++ VP P K + +E RR+GLE +I I +
Sbjct: 59 HKRIKK--LYKVPDFPSKRLPN----------WRTRGLEQRRQGLEAYIQGILYLN-QEV 105
Query: 139 ERCLHMFLQEPTIDKN 154
+ L FL+ +
Sbjct: 106 PKELLEFLRLRHFPTD 121
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo
sapiens} PDB: 2rea_A 2red_A
Length = 121
Score = 51.4 bits (123), Expect = 2e-09
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 13/113 (11%)
Query: 45 KRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNEL-ERDSKIVVPPLPGKAWKRQMP 103
++ Y VR+ + + S V R + +F+ L N+L +P P + +
Sbjct: 20 DKHYIYVVRILRE---GQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT- 75
Query: 104 FRGDDGIFEEEFIEDRRKGLETFINK-IAGHPLAQNERCLHMFLQEPTIDKNY 155
++ R+ L +++ + + F ++
Sbjct: 76 -------HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSHHHHHH 121
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 51.5 bits (123), Expect = 4e-09
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 24/123 (19%)
Query: 45 KRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELER---------DSKIVVPPLPG 95
+ + + +KT + RRY F L+++LE +P LP
Sbjct: 35 TSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPA 90
Query: 96 KAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINK-IAGHPLAQNERCLHMFLQEPTIDKN 154
K + ++E E R L ++ ++ + + +F + D
Sbjct: 91 KVYVG----------VKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSE 140
Query: 155 YVP 157
VP
Sbjct: 141 QVP 143
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
alpha polypeptide; PI3K, PX domain, transferase; 2.6A
{Homo sapiens}
Length = 140
Score = 50.7 bits (121), Expect = 6e-09
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 45 KRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNEL-ERDSKIVVPPLPGKAWKRQMP 103
++ Y VR+ + + S V R + +F+ L N+L +P P + +
Sbjct: 35 DKHYIYVVRILRE---GQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT- 90
Query: 104 FRGDDGIFEEEFIEDRRKGLETFINK-IAGHPLAQNERCLHMFL 146
++ R+ L +++ + + F
Sbjct: 91 -------HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFF 127
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase
regulator; NMR {Homo sapiens}
Length = 149
Score = 45.1 bits (106), Expect = 8e-07
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 23/124 (18%)
Query: 42 VAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNEL----------ERDSKIVVP 91
V KR + ++ + D+ VRR + +F L+ L R S V+P
Sbjct: 21 VQIKRLQTFAFSVRWS----DGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLP 76
Query: 92 PLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINK-IAGHPLAQNERCLHMFLQEPT 150
L ++ R + LET+ + +A + F
Sbjct: 77 KLLDAPLLGRV--------GRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQP 128
Query: 151 IDKN 154
+D
Sbjct: 129 LDLE 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-06
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 45/165 (27%)
Query: 5 TAEATKRLHVKKQTLDDAYAAPANFLEIDVVNP---------ITHGVAKKRYTDYEVRMK 55
E LH +++ D Y P F D++ P I H + + +
Sbjct: 438 KLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE------ 488
Query: 56 TNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGD--DGIFEE 113
+ + R + DF +L ++ D AW F +
Sbjct: 489 --------RMTLFRMVFLDFRFLEQKIRHD---------STAWNASGSILNTLQQLKFYK 531
Query: 114 EFIED-------RRKGLETFINKIAGHPLAQNERCL-HMFLQEPT 150
+I D + F+ KI + + L + L
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Score = 40.2 bits (93), Expect = 2e-04
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 33/139 (23%)
Query: 45 KRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRN---ELERDSKIVVPPLP--GKAW- 98
+ Y + R+ + VF NV R + LR EL +++ + GK W
Sbjct: 110 RMYIEQRDRLYNDNQVF--AKYNVSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 99 ----------KRQMPFRGDDGIF-----EEEFIEDRRKGLETFINKIAGHPLAQNERCLH 143
+ +M F IF E + L+ + +I + R H
Sbjct: 167 ALDVCLSYKVQCKMDF----KIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDH 219
Query: 144 MFLQEPTIDKNYVPGKIRN 162
+ + + ++R
Sbjct: 220 S--SNIKLRIHSIQAELRR 236
Score = 29.8 bits (66), Expect = 0.48
Identities = 12/115 (10%), Positives = 38/115 (33%), Gaps = 22/115 (19%)
Query: 30 LEIDVVNPITHGVAKKRYTDYEVRMKTN-------LPVFKTKDSNVRRRY------SDFE 76
+ V + + K D+ + K +K + +++ +++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 77 WLRNELERDSKIVVPPLPGKAWKRQM-PFRGDDGIFE------EEFIEDRRKGLE 124
+L + ++ + + P + + + Q D+ +F + R+ L
Sbjct: 93 FLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Score = 26.4 bits (57), Expect = 6.2
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 24/69 (34%)
Query: 110 IFEEEFIEDRR-KGLETF---------INKIAGHP-------------LAQNERCLHMFL 146
+FE+ F+++ K ++ I+ I L++ E + F+
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 147 QEPTIDKNY 155
+E + NY
Sbjct: 84 EE-VLRINY 91
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain,
NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo
sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Length = 141
Score = 44.3 bits (104), Expect = 2e-06
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 45 KRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPF 104
++ Y +K + V RR+++ L+ I + + R +P
Sbjct: 21 SQHYVYMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPE--NRIIPH 74
Query: 105 RGDDGIFE-EEFIEDRRKGLETFINKIAGHP 134
F+ + E+R+ L + + + P
Sbjct: 75 LPAPKWFDGQRAAENRQGTLTEYCSTLMSLP 105
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P,
3-kinase, PX domain, SH3 domain, cytoskeleton, cell
polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Length = 156
Score = 41.6 bits (97), Expect = 2e-05
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 68 VRRRYSDFEWLRNELER---DSKIVVPPLPGKAWKRQMPFRGDDGIF-EEEFIEDRRKGL 123
++R Y DF L+ +L + G+ KR MP+ + + R++ L
Sbjct: 49 LKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPYVTNSITKKRKEDL 108
Query: 124 ETFINKIAGHP 134
++ + P
Sbjct: 109 NIYVADLVNLP 119
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide;
phosphoprotein, nucleotide-binding, PIK3C2G, membrane,
PX-domain, transferase, ATP-binding; 1.25A {Homo
sapiens}
Length = 127
Score = 40.6 bits (95), Expect = 3e-05
Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 41 GVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNEL-ERDSKIVVPPLPGKAWK 99
G +KK Y +++ + + S + + F L ++L ++ + + +P P
Sbjct: 32 GFSKKSSNLYLIQVTHS----NNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHL 87
Query: 100 RQMPFRGDDGIFEEEFIEDRRKGLETFINK-IAGHPLAQNERCLHMFL 146
R + L ++ + + N C+ F
Sbjct: 88 PFTNSD-----------HRRFRDLNHYMEQILNVSHEVTNSDCVLSFF 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.009
Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 36/141 (25%)
Query: 14 VKKQTLD--DAYAAPA-NFLEIDVV--NPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNV 68
+ + D + F +D+V NP+ + +R + +F+T
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 69 RRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDDG-IFEEEF------------ 115
+ F+ + E + FR + G + +F
Sbjct: 1701 LKTEKIFKEIN---EHSTSYT--------------FRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 116 IED-RRKGLETFINKIAGHPL 135
ED + KGL AGH L
Sbjct: 1744 FEDLKSKGLIPADATFAGHSL 1764
Score = 29.2 bits (65), Expect = 0.78
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 33/94 (35%)
Query: 29 FLEIDVVNPIT---H-----GVAKKRYTD---YEVRMKTN---LPVFKTKD-SNVRRRYS 73
FL P+ H + D V +PV+ T D S++R
Sbjct: 420 FL------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV--- 470
Query: 74 DFEWLRNELERD--SKIVVPPLPGKAWKRQMPFR 105
L + I+ P+ W+ F+
Sbjct: 471 ----LSGSISERIVDCIIRLPV---KWETTTQFK 497
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 25.6 bits (57), Expect = 9.2
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 100 RQMPFRGDDGIFEEEFIEDR 119
R++PF G DG F ++ I +R
Sbjct: 324 REVPF-GQDGDFSKKAILNR 342
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,632,988
Number of extensions: 154380
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 34
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)