RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10869
         (163 letters)



>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 132

 Score =  114 bits (287), Expect = 4e-34
 Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 24  AAPANFLEIDVVNPITH----GVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLR 79
           A P NFLEI+V NP TH      +K  +TDYE+  +TNLP F  + S VRRRYSDFE+ R
Sbjct: 1   AEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFR 60

Query: 80  NELERDSKIVVPPLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQN 138
             L ++  ++  P                  F  E IE+RR+GL T++  +AGHP L   
Sbjct: 61  KCLIKEISMLNHPKVMVPHLPGK--ILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSG 118

Query: 139 ERCLHMFLQEP 149
            + L  F++  
Sbjct: 119 SKVLVRFIEAE 129


>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 117

 Score = 76.2 bits (187), Expect = 3e-19
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 49  DYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERD-SKIVVPPLPGKAWKRQMPFRGD 107
           D ++  K  L    T +  + +RYS+F  L+  LERD    +    P K       ++  
Sbjct: 12  DVKINPKYVLYGVSTPNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQR- 70

Query: 108 DGIFEEEFIEDRRKGLETFINKIAGHPLA---QNERCLHMFLQ 147
               + E I++RR GLE F+N++         ++ +    FLQ
Sbjct: 71  -RYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQ 112


>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 116

 Score = 75.5 bits (185), Expect = 6e-19
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 32  IDVVNPITHGVAKKRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVP 91
           + + +   H   KKR+T Y+V +      +      V RRY++F+ L N L++    +  
Sbjct: 7   VSIPSSDEHREKKKRFTVYKVLVSVGRSEWF-----VFRRYAEFDKLYNSLKKQFPAMAL 61

Query: 92  PLPGKAWKRQMPFRGDDGIFEEEFIEDRRKGLETFINKIAGHPLAQNERCLHMFLQ 147
            +P K              F+ +FI+ RR GL  FI  +  +P   N   +  FLQ
Sbjct: 62  KIPAKRIFGDN--------FDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQ 109


>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 143

 Score = 65.5 bits (159), Expect = 6e-15
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 45  KRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPF 104
             +  + + +KT           + RRY  F  L+++LE                  +P 
Sbjct: 35  TSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPA 90

Query: 105 RGDDGIFEEEFIEDRRKGLETFINK-IAGHPLAQNERCLHMFLQEPTIDKNYVP 157
           +   G  ++E  E R   L  ++   ++       +  + +F  +   D   VP
Sbjct: 91  KVYVG-VKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVP 143


>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 140

 Score = 55.5 bits (133), Expect = 4e-11
 Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 6/111 (5%)

Query: 45  KRYTDYEVRMKTNLPVFKTKDSNVRRRYSDFEWLRNELERDSKIVVPPLPGKAWKRQMPF 104
            ++  Y   +K         +  V RR+++       L+    I    +  +        
Sbjct: 20  SQHYVYMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENR-IIPHL 74

Query: 105 RGDDGIFEEEFIEDRRKGLETFINKIAGHP-LAQNERCLHMFLQEPTIDKN 154
                   +   E+R+  L  + + +   P        L  F +    D  
Sbjct: 75  PAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDLK 125


>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans
           [TaxId: 266]}
          Length = 121

 Score = 24.0 bits (51), Expect = 7.5
 Identities = 6/37 (16%), Positives = 10/37 (27%)

Query: 74  DFEWLRNELERDSKIVVPPLPGKAWKRQMPFRGDDGI 110
               L   +      +V     K  K +M F+     
Sbjct: 71  TEADLIEYVTDPKPWLVKMTDDKGAKTKMTFKMGKNQ 107


>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 104

 Score = 23.7 bits (51), Expect = 8.5
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 8/40 (20%)

Query: 16 KQTLDDAYAAPANFLEIDVVNPITHGVAKKRYTDYEVRMK 55
           +TL+ +  A A   + +   P  +         ++V MK
Sbjct: 7  LETLNGSEMASATLFKKEPPKPPLNN--------FKVGMK 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 648,368
Number of extensions: 30476
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 10
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)