BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1087
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 164/393 (41%), Gaps = 74/393 (18%)
Query: 56 HLYQD-----AFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA------------ 98
H+Y D FLTT+R+F P E++ +I+R+ + + R A
Sbjct: 616 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERF-EIPEPEPTEADRIAIENGDQPLSAEL 674
Query: 99 ---RETFSFLVQ----------VVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLR 145
R+ + VQ V +E D L++ + +FI + K +
Sbjct: 675 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 734
Query: 146 VKLLAKYDCKNNESVKN-EILSSLNVYTTH---------YTLLAFKSEHIAEQMTLLDSD 195
+ K ++N N SS H + LL IA Q+TLL+SD
Sbjct: 735 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 794
Query: 196 LFIKIEIPEVLA--WIEQQNEEKSPNLTRA-----------RTRILEQNEARDREKYVVK 242
L+ ++ E++ W ++ E SPNL + I+E +R V +
Sbjct: 795 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 854
Query: 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW--------QKHITEGLKEYCALIDST 294
I+I++ +++NNFN L ++SA++S+P+ RL+ QK I E E S
Sbjct: 855 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL-----SE 909
Query: 295 SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRR 354
++ Y L PPC+P+ G+ L ++ GNP +L K +INFSKRR
Sbjct: 910 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL-------KRHGKELINFSKRR 962
Query: 355 QQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD 387
+ I ++++++ + I FF N +
Sbjct: 963 KVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 995
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 400 ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
I+E +R V + I+I++ +++NNFN L ++SA+ + +Y+
Sbjct: 839 IVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 885
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 164/393 (41%), Gaps = 74/393 (18%)
Query: 56 HLYQD-----AFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA------------ 98
H+Y D FLTT+R+F P E++ +I+R+ + + R A
Sbjct: 419 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERF-EIPEPEPTEADRIAIENGDQPLSAEL 477
Query: 99 ---RETFSFLVQ----------VVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLR 145
R+ + VQ V +E D L++ + +FI + K +
Sbjct: 478 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 537
Query: 146 VKLLAKYDCKNNESVKN-EILSSLNVYTTH---------YTLLAFKSEHIAEQMTLLDSD 195
+ K ++N N SS H + LL IA Q+TLL+SD
Sbjct: 538 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 597
Query: 196 LFIKIEIPEVLA--WIEQQNEEKSPNLTRA-----------RTRILEQNEARDREKYVVK 242
L+ ++ E++ W ++ E SPNL + I+E +R V +
Sbjct: 598 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 657
Query: 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW--------QKHITEGLKEYCALIDST 294
I+I++ +++NNFN L ++SA++S+P+ RL+ QK I E E S
Sbjct: 658 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL-----SE 712
Query: 295 SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRR 354
++ Y L PPC+P+ G+ L ++ GNP +L K +INFSKRR
Sbjct: 713 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL-------KRHGKELINFSKRR 765
Query: 355 QQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD 387
+ I ++++++ + I FF N +
Sbjct: 766 KVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 798
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 400 ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
I+E +R V + I+I++ +++NNFN L ++SA+ + +Y+
Sbjct: 642 IVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 688
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 164/393 (41%), Gaps = 74/393 (18%)
Query: 56 HLYQD-----AFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA------------ 98
H+Y D FLTT+R+F P E++ +I+R+ + + R A
Sbjct: 419 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERF-EIPEPEPTEADRIAIENGDQPLSAEL 477
Query: 99 ---RETFSFLVQ----------VVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLR 145
R+ + VQ V +E D L++ + +FI + K +
Sbjct: 478 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 537
Query: 146 VKLLAKYDCKNNESVKN----------EILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSD 195
+ K ++N N E S + + LL IA Q+TLL+SD
Sbjct: 538 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 597
Query: 196 LFIKIEIPEVLA--WIEQQNEEKSPNLTRA-----------RTRILEQNEARDREKYVVK 242
L+ ++ E++ W ++ E SPNL + I+E +R V +
Sbjct: 598 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 657
Query: 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW--------QKHITEGLKEYCALIDST 294
I+I++ +++NNFN L ++SA++S+P+ RL+ QK I E E S
Sbjct: 658 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL-----SE 712
Query: 295 SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRR 354
++ Y L PPC+P+ G+ L ++ GNP +L K +INFSKRR
Sbjct: 713 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL-------KRHGKELINFSKRR 765
Query: 355 QQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD 387
+ I ++++++ + I FF N +
Sbjct: 766 KVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 798
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 400 ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
I+E +R V + I+I++ +++NNFN L ++SA+ + +Y+
Sbjct: 642 IVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 688
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 74/393 (18%)
Query: 56 HLYQDA-----FLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA------------ 98
H+Y D FLTT+R+F P E++ +I+R+ + + R A
Sbjct: 49 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERF-EIPEPEPTEADRIAIENGDQPLSAEL 107
Query: 99 ---RETFSFLVQ----------VVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLR 145
R+ + VQ V +E D L++ + +FI + K +
Sbjct: 108 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 167
Query: 146 VKLLAKYDCKNNESVKN-EILSSLNVYTTH---------YTLLAFKSEHIAEQMTLLDSD 195
+ K ++N N SS H + LL IA Q+TLL+SD
Sbjct: 168 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 227
Query: 196 LFIKIEIPEVLA--WIEQQNEEKSPNL---TRARTR--------ILEQNEARDREKYVVK 242
L+ ++ E++ W ++ E SPNL R T I+E +R V +
Sbjct: 228 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 287
Query: 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW--------QKHITEGLKEYCALIDST 294
I+I++ +++NNFN L ++SA++S+P+ RL+ QK I E E S
Sbjct: 288 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL-----SE 342
Query: 295 SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRR 354
++ Y L PPC+P+ G+ L ++ GNP +L K +INFSKRR
Sbjct: 343 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL-------KRHGKELINFSKRR 395
Query: 355 QQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD 387
+ I ++++++ + I FF N +
Sbjct: 396 KVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 428
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 400 ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
I+E +R V + I+I++ +++NNFN L ++SA+ + +Y+
Sbjct: 272 IVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 318
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 74/393 (18%)
Query: 56 HLYQDA-----FLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA------------ 98
H+Y D FLTT+R+F P E++ +I+R+ + + R A
Sbjct: 57 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERF-EIPEPEPTEADRIAIENGDQPLSAEL 115
Query: 99 ---RETFSFLVQ----------VVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLR 145
R+ + VQ V +E D L++ + +FI + K +
Sbjct: 116 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 175
Query: 146 VKLLAKYDCKNNESVKN-EILSSLNVYTTH---------YTLLAFKSEHIAEQMTLLDSD 195
+ K ++N N SS H + LL IA Q+TLL+SD
Sbjct: 176 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 235
Query: 196 LFIKIEIPEVLA--WIEQQNEEKSPNL---TRARTR--------ILEQNEARDREKYVVK 242
L+ ++ E++ W ++ E SPNL R T I+E +R V +
Sbjct: 236 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 295
Query: 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW--------QKHITEGLKEYCALIDST 294
I+I++ +++NNFN L ++SA++S+P+ RL+ QK I E E S
Sbjct: 296 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL-----SE 350
Query: 295 SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRR 354
++ Y L PPC+P+ G+ L ++ GNP +L K +INFSKRR
Sbjct: 351 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL-------KRHGKELINFSKRR 403
Query: 355 QQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD 387
+ I ++++++ + I FF N +
Sbjct: 404 KVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 436
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 400 ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
I+E +R V + I+I++ +++NNFN L ++SA+ + +Y+
Sbjct: 280 IVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 326
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 74/393 (18%)
Query: 56 HLYQDA-----FLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA------------ 98
H+Y D FLTT+R+F P E++ +I+R+ + + R A
Sbjct: 51 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERF-EIPEPEPTEADRIAIENGDQPLSAEL 109
Query: 99 ---RETFSFLVQ----------VVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLR 145
R+ + VQ V +E D L++ + +FI + K +
Sbjct: 110 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 169
Query: 146 VKLLAKYDCKNNESVKN-EILSSLNVYTTH---------YTLLAFKSEHIAEQMTLLDSD 195
+ K ++N N SS H + LL IA Q+TLL+SD
Sbjct: 170 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 229
Query: 196 LFIKIEIPEVLA--WIEQQNEEKSPNL---TRARTR--------ILEQNEARDREKYVVK 242
L+ ++ E++ W ++ E SPNL R T I+E +R V +
Sbjct: 230 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 289
Query: 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW--------QKHITEGLKEYCALIDST 294
I+I++ +++NNFN L ++SA++S+P+ RL+ QK I E E S
Sbjct: 290 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL-----SE 344
Query: 295 SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRR 354
++ Y L PPC+P+ G+ L ++ GNP +L K +INFSKRR
Sbjct: 345 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL-------KRHGKELINFSKRR 397
Query: 355 QQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD 387
+ I ++++++ + I FF N +
Sbjct: 398 KVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 430
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 400 ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
I+E +R V + I+I++ +++NNFN L ++SA+ + +Y+
Sbjct: 274 IVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 320
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 74/393 (18%)
Query: 56 HLYQDA-----FLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA------------ 98
H+Y D FLTT+R+F P E++ +I+R+ + + R A
Sbjct: 51 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERF-EIPEPEPTEADRIAIENGDQPLSAEL 109
Query: 99 ---RETFSFLVQ----------VVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLR 145
R+ + VQ V +E D L++ + +FI + K +
Sbjct: 110 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 169
Query: 146 VKLLAKYDCKNNESVKN-EILSSLNVYTTH---------YTLLAFKSEHIAEQMTLLDSD 195
+ K ++N N SS H + LL IA Q+TLL+SD
Sbjct: 170 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 229
Query: 196 LFIKIEIPEVLA--WIEQQNEEKSPNL---TRARTR--------ILEQNEARDREKYVVK 242
L+ ++ E++ W ++ E SPNL R T I+E +R V +
Sbjct: 230 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 289
Query: 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW--------QKHITEGLKEYCALIDST 294
I+I++ +++NNFN L ++SA++S+P+ RL+ QK I E E S
Sbjct: 290 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL-----SE 344
Query: 295 SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRR 354
++ Y L PPC+P+ G+ L ++ GNP +L K +INFSKRR
Sbjct: 345 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL-------KRHGKELINFSKRR 397
Query: 355 QQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD 387
+ I ++++++ + I FF N +
Sbjct: 398 KVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 430
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 400 ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
I+E +R V + I+I++ +++NNFN L ++SA+ + +Y+
Sbjct: 274 IVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 320
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 113/235 (48%), Gaps = 28/235 (11%)
Query: 185 IAEQMTLLDSDLFIKIEIPEVLA--WIEQQNEEKSPNLTRAR-----------TRILEQN 231
IAEQ+TLLD +F I E W++ + E++P + + + I+
Sbjct: 9 IAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNE 68
Query: 232 EARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--W---QKHITEGLKE 286
+ R + K++ + R ++N+N+ L + S+++ + I RL+ W K L +
Sbjct: 69 DISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDK 128
Query: 287 YCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKN 346
L+ S F+ R++L PPC+PY+G+ L DL F+ G P+
Sbjct: 129 LQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGT----------PNYTEDG 178
Query: 347 VINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRIL 401
++NFSK R +I++ +++F+ +K ++I++ + L EE++ + +L
Sbjct: 179 LVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESLYESSLL 233
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 236 REKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLK---EYCAL 290
R + + KFIKI H ++ N NS+ ++ L + + RL W+K ++ K E+ +L
Sbjct: 523 RVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESL 582
Query: 291 IDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINF 350
+D + + RAYR A+ +PP IP++ L+++D+TF H GN + N++NF
Sbjct: 583 MDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFI-----------DNLVNF 631
Query: 351 SKRRQQFNIVQNMKRFRS 368
K R N + ++ +RS
Sbjct: 632 EKMRMIANTARTVRYYRS 649
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 371 HKFPRHDRIIEFFSNFDDFLSE----EAMARTRILEQNEARDREKYVVKFIKIMKHLRKM 426
H F RH+ + +N D FL + T + ++ R + + KFIKI H ++
Sbjct: 482 HTFGRHN-FKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 540
Query: 427 NNFNSYLGLLSALKTCFIYQTAILLNK 453
N NS+ ++ L + + A+ K
Sbjct: 541 KNLNSFFAIVMGLSNVAVSRLALTWEK 567
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 236 REKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLK---EYCAL 290
R + + KFIKI H ++ N NS+ ++ L + + RL W+K ++ K E+ +L
Sbjct: 828 RVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESL 887
Query: 291 IDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINF 350
+D + + RAYR A+ +PP IP++ L+++D+TF H GN + N++NF
Sbjct: 888 MDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFI-----------DNLVNF 936
Query: 351 SKRRQQFNIVQNMKRFRS 368
K R N + ++ +RS
Sbjct: 937 EKMRMIANTARTVRYYRS 954
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 371 HKFPRHDRIIEFFSNFDDFLSE----EAMARTRILEQNEARDREKYVVKFIKIMKHLRKM 426
H F RH+ + +N D FL + T + ++ R + + KFIKI H ++
Sbjct: 787 HTFGRHN-FKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 845
Query: 427 NNFNSYLGLLSALKTCFIYQTAILLNK 453
N NS+ ++ L + + A+ K
Sbjct: 846 KNLNSFFAIVMGLSNVAVSRLALTWEK 872
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 236 REKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLK---EYCAL 290
R + + KFIKI H ++ N NS+ ++ L + + RL W+K ++ K E+ +L
Sbjct: 828 RVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESL 887
Query: 291 IDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINF 350
+D + + RAYR A+ +PP IP++ L+++D+TF H GN + N++NF
Sbjct: 888 MDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFI-----------DNLVNF 936
Query: 351 SKRRQQFNIVQNMKRFRS 368
K R N + ++ +RS
Sbjct: 937 EKMRMIANTARTVRYYRS 954
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 371 HKFPRHDRIIEFFSNFDDFLSE----EAMARTRILEQNEARDREKYVVKFIKIMKHLRKM 426
H F RH+ + +N D FL + T + ++ R + + KFIKI H ++
Sbjct: 787 HTFGRHN-FKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 845
Query: 427 NNFNSYLGLLSALKTCFIYQTAILLNK 453
N NS+ ++ L + + A+ K
Sbjct: 846 KNLNSFFAIVMGLSNVAVSRLALTWEK 872
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 175 YTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLA---WIEQQNEEKSPNLTRARTR----- 226
+ +L E A Q+TL+D +F I+ PE LA W +++ +PN+ A TR
Sbjct: 26 FDVLKVTPEEFASQITLMDIPVFKAIQ-PEELASCGWSKKEKHSLAPNVV-AFTRRFNQV 83
Query: 227 -------ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRL--EW- 276
IL + R + + F+KI K L ++NN +S + ++SAL SAPI RL W
Sbjct: 84 SFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWA 143
Query: 277 -----QKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNP 330
K E L + D+ R Y ++L P IPY+G+ L DL ++ P
Sbjct: 144 LLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMV--PSIPYLGIYLLDLIYIDSAYP 200
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 400 ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIY---QTAILLNK 453
IL + R + + F+KI K L ++NN +S + ++SAL++ I+ +T LLN+
Sbjct: 91 ILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNR 147
>pdb|3T6G|A Chain A, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
pdb|3T6G|C Chain C, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
Length = 331
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 29/113 (25%)
Query: 231 NEARDREKYVVKFIKIMKHLRK-MNNFNSYLGLLSALDSAPIRRLE--W----QKHITEG 283
A +R + K I++ LR M N S+ ++ ALD A I RLE W Q+H TEG
Sbjct: 119 GSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRH-TEG 177
Query: 284 LKEYCALIDSTSSFRAYRQALAETQ--PPCIPYIGLVLQDLTFVHIGNPHLLP 334
Y + + ++L E + PP L + TF PH+LP
Sbjct: 178 AILY------EKKLKPFLKSLNEGKEGPP--------LSNTTF-----PHVLP 211
>pdb|3R3E|A Chain A, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|3R3E|B Chain B, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|4G0I|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0I|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0K|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0K|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0L|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
pdb|4G0L|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
Length = 328
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 81 DRYHKFVS-------SSEVQKQRAARETFSFLVQVVSELTV---YELDDNLVK------Y 124
DRYH +VS + + ++ E F V VV+ L + + DD+ Y
Sbjct: 53 DRYHLYVSLACPWAHRTLIMRKLKGLEPF-ISVSVVNPLMLENGWTFDDSFPGATGDTLY 111
Query: 125 LTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKS 182
+F+YQL H P RV + +D KN+ V NE + ++ T + L K+
Sbjct: 112 QNEFLYQLYL--HADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKA 167
>pdb|3QZN|A Chain A, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
Complex With Heme
pdb|3QZN|B Chain B, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
Complex With Heme
pdb|3QZN|C Chain C, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
Complex With Heme
Length = 127
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 14 FQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPL 73
FQ+V N F +Y YN N N+ELA V ++AD A +++ T +
Sbjct: 46 FQTVLNNASFWKEYKFYNAN---NQELATTVVNDNKKADTR--TINVAVEPGYKSLTTKV 100
Query: 74 EIIKKLIDRYHKFVSSSEVQK 94
I+ I+ H++ + E +K
Sbjct: 101 HIVVPQINANHRYTTHLEFEK 121
>pdb|3QZO|A Chain A, Staphylococcus Aureus Isda Neat Domain In Complex With
Heme, Reduced Crystal
pdb|3QZO|B Chain B, Staphylococcus Aureus Isda Neat Domain In Complex With
Heme, Reduced Crystal
pdb|3QZO|C Chain C, Staphylococcus Aureus Isda Neat Domain In Complex With
Heme, Reduced Crystal
pdb|3QZO|D Chain D, Staphylococcus Aureus Isda Neat Domain In Complex With
Heme, Reduced Crystal
pdb|3QZP|A Chain A, Staphylococcus Aureus Isda Neat Domain In Complex With
Cobalt- Protoporphyrin Ix
pdb|3QZP|B Chain B, Staphylococcus Aureus Isda Neat Domain In Complex With
Cobalt- Protoporphyrin Ix
Length = 127
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 14 FQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPL 73
FQ+V N F +Y YN N N+ELA V ++AD A +++ T +
Sbjct: 46 FQTVLNNASFWKEYKFYNAN---NQELATTVVNDNKKADTR--TINVAVEPGYKSLTTKV 100
Query: 74 EIIKKLIDRYHKFVSSSEVQK 94
I+ I+ H++ + E +K
Sbjct: 101 HIVVPQINYNHRYTTHLEFEK 121
>pdb|3QZL|A Chain A, Staphylococcus Aureus Isda Neat Domain K75a Variant In
Complex With Heme
Length = 127
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 14 FQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPL 73
FQ+V N F +Y YN N N+ELA V ++AD A +++ T +
Sbjct: 46 FQTVLNNASFWKEYKFYNAN---NQELATTVVNDNKKADTR--TINVAVEPGYKSLTTKV 100
Query: 74 EIIKKLIDRYHKFVSSSEVQK 94
I+ I+ H++ + E +K
Sbjct: 101 HIVVPQINYNHRYTTHLEFEK 121
>pdb|3QZM|A Chain A, Staphylococcus Aureus Isda Neat Domain H83a Variant In
Complex With Heme
pdb|3QZM|B Chain B, Staphylococcus Aureus Isda Neat Domain H83a Variant In
Complex With Heme
Length = 127
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 14 FQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPL 73
FQ+V N F +Y YN N N+ELA V ++AD A +++ T +
Sbjct: 46 FQTVLNNASFWKEYKFYNAN---NQELATTVVNDNKKADTR--TINVAVEPGYKSLTTKV 100
Query: 74 EIIKKLIDRYHKFVSSSEVQK 94
I+ I+ H++ + E +K
Sbjct: 101 HIVVPQINYNHRYTTHLEFEK 121
>pdb|2ITE|A Chain A, Crystal Structure Of The Isda Neat Domain From
Staphylococcus Aureus
pdb|2ITE|B Chain B, Crystal Structure Of The Isda Neat Domain From
Staphylococcus Aureus
pdb|2ITF|A Chain A, Crystal Structure Isda Neat Domain From Staphylococcus
Aureus With Heme Bound
pdb|2ITF|B Chain B, Crystal Structure Isda Neat Domain From Staphylococcus
Aureus With Heme Bound
pdb|2ITF|C Chain C, Crystal Structure Isda Neat Domain From Staphylococcus
Aureus With Heme Bound
pdb|2ITF|D Chain D, Crystal Structure Isda Neat Domain From Staphylococcus
Aureus With Heme Bound
Length = 127
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 14 FQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPL 73
FQ+V N F +Y YN N N+ELA V ++AD A +++ T +
Sbjct: 46 FQTVLNNASFWKEYKFYNAN---NQELATTVVNDNKKADTR--TINVAVEPGYKSLTTKV 100
Query: 74 EIIKKLIDRYHKFVSSSEVQK 94
I+ I+ H++ + E +K
Sbjct: 101 HIVVPQINYNHRYTTHLEFEK 121
>pdb|4GAM|A Chain A, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|F Chain F, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|K Chain K, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|P Chain P, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 527
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 352 KRRQQFNIVQN-MKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRIL--EQNEARD 408
K +QF +Q+ + R +GV P+ + ++ SNF + A+A T +L A
Sbjct: 74 KDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQ 133
Query: 409 REKYVVKFIKIMKHLRKMNNFNSYL 433
+ Y+ + + ++H + N Y
Sbjct: 134 KNGYLAQVLDEIRHTHQCAYVNYYF 158
>pdb|1FZ4|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ4|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ5|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ7|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FYZ|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FYZ|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ0|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ0|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ1|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ1|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ2|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ2|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ3|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ3|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ6|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ8|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ8|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ9|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZ9|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZH|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZH|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|A Chain A, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1FZI|B Chain B, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1XMF|A Chain A, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMF|B Chain B, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMG|A Chain A, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMG|B Chain B, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMH|A Chain A, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|B Chain B, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XU5|A Chain A, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XU5|B Chain B, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XVB|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVB|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVC|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVC|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVD|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVD|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVE|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVE|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVF|A Chain A, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVF|B Chain B, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVG|A Chain A, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XVG|B Chain B, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XU3|A Chain A, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|1XU3|B Chain B, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
Length = 527
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 352 KRRQQFNIVQN-MKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQN--EARD 408
K +QF +Q+ + R +GV P+ + ++ SNF + A+A T +L + A
Sbjct: 74 KDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQ 133
Query: 409 REKYVVKFIKIMKHLRKMNNFNSYL 433
+ Y+ + + ++H + N Y
Sbjct: 134 KNGYLAQVLDEIRHTHQCAYVNYYF 158
>pdb|2O1A|A Chain A, Crystal Structure Of Iron-regulated Surface Determinant
Protein A From Staphylococcus Aureus- Targeted Domain
47...188
Length = 142
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 14 FQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPL 73
FQ+V N F +Y YN N N+ELA V ++AD A +++ T +
Sbjct: 57 FQTVLNNASFWKEYKFYNAN---NQELATTVVNDNKKADTR--TINVAVEPGYKSLTTKV 111
Query: 74 EIIKKLIDRYHKFVSSSEVQK 94
I+ I+ H++ + E +K
Sbjct: 112 HIVVPQINYNHRYTTHLEFEK 132
>pdb|2WR0|A Chain A, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|B Chain B, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|C Chain C, Structures Of Influenza H2 Hemagglutinins
pdb|2WR1|A Chain A, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|B Chain B, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|C Chain C, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR2|A Chain A, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|B Chain B, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|C Chain C, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
Length = 509
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 271 IRRLEWQKHITEGLKEYCALIDSTSSFR 298
+ R +W +H T G CA++D+ S FR
Sbjct: 132 LPRDQWTQHTTTGGSRACAVLDNPSFFR 159
>pdb|2D73|A Chain A, Crystal Structure Analysis Of Susb
pdb|2D73|B Chain B, Crystal Structure Analysis Of Susb
pdb|2ZQ0|A Chain A, Crystal Structure Of Susb Complexed With Acarbose
pdb|2ZQ0|B Chain B, Crystal Structure Of Susb Complexed With Acarbose
Length = 738
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 15/173 (8%)
Query: 73 LEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVS-ELTVYE-LDDNLVKYLTDFIY 130
L +KK D Y V++ E + T+ L+ S T YE N V + T +
Sbjct: 491 LYAVKKAAD-YKIMVNAHEATRPTGICRTYPNLIGNESARGTEYESFGGNKVYHTTILPF 549
Query: 131 QLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMT 190
L G G+ K + NN V++ I L +Y T Y+ L ++
Sbjct: 550 TRLVGGPMDYTPGIFETHCNKMNPANNSQVRSTIARQLALYVTMYSPLQMAADIPENYER 609
Query: 191 LLDSDLFIKIEIPEVLAWIEQQNEEKSPN--LTRARTRILEQNEARDREKYVV 241
+D+ FIK L W E E P +T AR +A+D + + V
Sbjct: 610 FMDAFQFIK---DVALDWDETNYLEAEPGEYITIAR-------KAKDTDDWYV 652
>pdb|2JKA|A Chain A, Native Structure Of A Family 97 Alpha-glucosidase From
Bacteroides Thetaiotaomicron
pdb|2JKA|B Chain B, Native Structure Of A Family 97 Alpha-glucosidase From
Bacteroides Thetaiotaomicron
pdb|2JKE|A Chain A, Structure Of A Family 97 Alpha-glucosidase From
Bacteroides Thetaiotaomicron In Complex With
Deoxynojirimycin
pdb|2JKE|B Chain B, Structure Of A Family 97 Alpha-glucosidase From
Bacteroides Thetaiotaomicron In Complex With
Deoxynojirimycin
pdb|2JKP|A Chain A, Structure Of A Family 97 Alpha-Glucosidase From
Bacteroides Thetaiotaomicron In Complex With
Castanospermine
pdb|2JKP|B Chain B, Structure Of A Family 97 Alpha-Glucosidase From
Bacteroides Thetaiotaomicron In Complex With
Castanospermine
Length = 727
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 15/173 (8%)
Query: 73 LEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVS-ELTVYE-LDDNLVKYLTDFIY 130
L +KK D Y V++ E + T+ L+ S T YE N V + T +
Sbjct: 480 LYAVKKAAD-YKIMVNAHEATRPTGICRTYPNLIGNESARGTEYESFGGNKVYHTTILPF 538
Query: 131 QLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMT 190
L G G+ K + NN V++ I L +Y T Y+ L ++
Sbjct: 539 TRLVGGPMDYTPGIFETHCNKMNPANNSQVRSTIARQLALYVTMYSPLQMAADIPENYER 598
Query: 191 LLDSDLFIKIEIPEVLAWIEQQNEEKSPN--LTRARTRILEQNEARDREKYVV 241
+D+ FIK L W E E P +T AR +A+D + + V
Sbjct: 599 FMDAFQFIK---DVALDWDETNYLEAEPGEYITIAR-------KAKDTDDWYV 641
>pdb|2VK9|A Chain A, Crystal Structure Of The Catalytic Domain Of Alpha-Toxin
From Clostridium Novyi
Length = 551
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 50 QADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVV 109
+A K + +AF+ + T +I +L +RY + +S +Q++ ET+ + V
Sbjct: 376 KAATGKKTFSNAFIISNNDSLTLNNLISQLENRYE--ILNSIIQEKFKICETYDSYINSV 433
Query: 110 SELTVYELDDNLVKYLTDFIYQL---LSSGHFKP 140
SEL + NL + F Q+ LSSG FKP
Sbjct: 434 SELVLETTPKNLSMDGSSFYQQIIGYLSSG-FKP 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,332,714
Number of Sequences: 62578
Number of extensions: 488295
Number of successful extensions: 1424
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 61
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)