Query psy1087
Match_columns 454
No_of_seqs 232 out of 1244
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:31:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00147 RasGEF Guanine nucl 100.0 3.1E-48 6.8E-53 374.9 21.3 219 177-407 1-241 (242)
2 cd00155 RasGEF Guanine nucleot 100.0 7.1E-48 1.5E-52 371.2 22.0 214 177-400 1-236 (237)
3 KOG3629|consensus 100.0 3.7E-47 8.1E-52 380.7 23.8 351 40-403 71-471 (728)
4 PF00617 RasGEF: RasGEF domain 100.0 2E-38 4.3E-43 294.3 10.0 168 178-355 1-188 (188)
5 KOG2378|consensus 100.0 2.4E-33 5.2E-38 277.5 21.6 221 174-407 330-572 (573)
6 KOG3542|consensus 100.0 3.2E-33 6.9E-38 286.3 12.7 187 175-372 862-1067(1283)
7 KOG3541|consensus 100.0 4.8E-32 1E-36 265.7 19.4 361 40-411 30-467 (477)
8 KOG3417|consensus 99.8 1.1E-20 2.3E-25 211.8 10.8 224 171-403 205-458 (840)
9 KOG3417|consensus 99.6 5.4E-15 1.2E-19 166.0 13.4 315 56-400 495-828 (840)
10 cd06224 REM Guanine nucleotide 99.5 1.1E-13 2.3E-18 119.4 9.8 95 41-135 2-105 (122)
11 smart00229 RasGEFN Guanine nuc 99.5 2.5E-13 5.5E-18 118.2 9.1 99 37-135 6-110 (127)
12 PF00618 RasGEF_N: RasGEF N-te 99.5 1.1E-13 2.3E-18 116.3 6.2 90 39-128 5-104 (104)
13 KOG3542|consensus 97.2 0.00074 1.6E-08 71.7 7.3 85 42-136 430-518 (1283)
14 PF00617 RasGEF: RasGEF domain 97.1 0.0005 1.1E-08 63.4 4.5 48 399-446 63-110 (188)
15 cd00155 RasGEF Guanine nucleot 96.8 0.0012 2.6E-08 63.4 4.5 46 401-446 66-111 (237)
16 smart00147 RasGEF Guanine nucl 96.7 0.0017 3.7E-08 62.7 4.5 46 401-446 66-111 (242)
17 KOG3629|consensus 63.3 4.1 8.8E-05 43.3 1.7 70 375-447 253-323 (728)
18 KOG2378|consensus 33.5 42 0.00091 35.3 3.4 43 404-446 401-443 (573)
19 KOG3541|consensus 29.0 70 0.0015 33.2 4.1 49 232-280 412-460 (477)
20 PF09573 RE_TaqI: TaqI restric 25.4 1.2E+02 0.0025 28.7 4.5 57 352-428 157-219 (247)
21 KOG2387|consensus 21.5 86 0.0019 33.0 3.1 77 195-272 231-327 (585)
No 1
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=100.00 E-value=3.1e-48 Score=374.89 Aligned_cols=219 Identities=37% Similarity=0.705 Sum_probs=202.8
Q ss_pred ccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCc-hHHH-----------HHHHhhCCCCHhhHHHHHHH
Q psy1087 177 LLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSP-NLTR-----------ARTRILEQNEARDREKYVVK 242 (454)
Q Consensus 177 ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~p-ni~~-----------v~~~Il~~~~~~~Ra~~i~k 242 (454)
+++++|.+||+|||++|+++|++|+|.||+ .|.+.+....+| ||.+ |+.+||.++++++|++++++
T Consensus 1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~ 80 (242)
T smart00147 1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999 688877666778 8876 78999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccH---HHHHHHHHHhCCCCcHHHHHHHHhccC-CCcccchh
Q psy1087 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHIT---EGLKEYCALIDSTSSFRAYRQALAETQ-PPCIPYIG 316 (454)
Q Consensus 243 fI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~---~~l~~l~~l~~~~~n~~~yR~~l~~~~-~p~IPflg 316 (454)
||+||.+|.++||||+++||++||++++|+||+ |+.++. +.+++|++++++++||++||++++++. +|||||+|
T Consensus 81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg 160 (242)
T smart00147 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLG 160 (242)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchH
Confidence 999999999999999999999999999999998 988764 568899999999999999999999987 99999999
Q ss_pred hhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCCCCCc-hHHHHHHHhC-CCCCCHHH
Q psy1087 317 LVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRH-DRIIEFFSNF-DDFLSEEA 394 (454)
Q Consensus 317 ~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~f~~~-~~i~~~l~~~-~~~~~e~~ 394 (454)
++|+|++++++|+|++.++| +|||.|+|+++++|..++.||+.+|+|.++ ++||.+|.++ ....++|+
T Consensus 161 ~~l~dl~~~~~~~~~~~~~~----------~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~~~~iq~~l~~~~~~~~~~~~ 230 (242)
T smart00147 161 VLLKDLTFIDEGNPDFLENG----------LVNFEKRRKIAEILREIRQLQSQPYNLRPNRSDIQSLLQQLLDHLDEEEE 230 (242)
T ss_pred HHHHHHHHHHccCcccccCC----------cccHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhcCCHHH
Confidence 99999999999999998777 999999999999999999999999999999 9999999997 44457779
Q ss_pred HHHhhhhcchhhh
Q psy1087 395 MARTRILEQNEAR 407 (454)
Q Consensus 395 ly~~Sl~~~~e~~ 407 (454)
+|++|+ +.||+
T Consensus 231 ~~~~S~--~~EP~ 241 (242)
T smart00147 231 LYQLSL--KIEPR 241 (242)
T ss_pred HHHHHH--HhCCC
Confidence 999999 46664
No 2
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=100.00 E-value=7.1e-48 Score=371.16 Aligned_cols=214 Identities=37% Similarity=0.701 Sum_probs=200.9
Q ss_pred ccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCC-CCCchHHH-----------HHHHhhCCCCHhhHHHHHHH
Q psy1087 177 LLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNE-EKSPNLTR-----------ARTRILEQNEARDREKYVVK 242 (454)
Q Consensus 177 ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~-~~~pni~~-----------v~~~Il~~~~~~~Ra~~i~k 242 (454)
++++||.+||+|||++|+++|++|+|.|++ .|.+.... +.+|||.+ |+.+||.++++++|++++++
T Consensus 1 ~l~~d~~eiA~QlTl~~~~lf~~I~~~El~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~ 80 (237)
T cd00155 1 FLSLDPKELAEQLTLLDFELFRKIEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSK 80 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 578999999999999999999999999998 58776544 37999876 88999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--ccccc---HHHHHHHHHHhCCCCcHHHHHHHHhcc--CCCcccch
Q psy1087 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHI---TEGLKEYCALIDSTSSFRAYRQALAET--QPPCIPYI 315 (454)
Q Consensus 243 fI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~---~~~l~~l~~l~~~~~n~~~yR~~l~~~--~~p~IPfl 315 (454)
||+||.+|+++||||+++||++||++++|.||+ |+.++ ++.+++|..++++++||++||++++++ .+|||||+
T Consensus 81 ~I~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~l 160 (237)
T cd00155 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFL 160 (237)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCccchhHHHHHHHCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeeh
Confidence 999999999999999999999999999999998 99887 567889999999999999999999998 89999999
Q ss_pred hhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHhCC-CCCCHHH
Q psy1087 316 GLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD-DFLSEEA 394 (454)
Q Consensus 316 g~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~f~~~~~i~~~l~~~~-~~~~e~~ 394 (454)
|+||+||++++||+|+++++| +|||.|+++++++|.++..||+.+|+|.++++||+||.+++ ...++|+
T Consensus 161 g~~l~dl~~~~e~~~~~~~~~----------~iN~~K~~~i~~~i~~~~~~Q~~~Y~~~~~~~iq~~l~~~~~~~~~~~~ 230 (237)
T cd00155 161 GVYLKDLTFLHEGNPDFLEGN----------LVNFEKRRKIAEILREIRQLQSNSYELNRDEDILAFLWKLLELILNEDE 230 (237)
T ss_pred hHHHHHHHHHHccCCccCcCC----------CccHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHhccccCCCHHH
Confidence 999999999999999998767 99999999999999999999999999999999999999987 4589999
Q ss_pred HHHhhh
Q psy1087 395 MARTRI 400 (454)
Q Consensus 395 ly~~Sl 400 (454)
+|++|+
T Consensus 231 l~~~Sl 236 (237)
T cd00155 231 LYELSL 236 (237)
T ss_pred HHHHhc
Confidence 999997
No 3
>KOG3629|consensus
Probab=100.00 E-value=3.7e-47 Score=380.74 Aligned_cols=351 Identities=19% Similarity=0.306 Sum_probs=277.8
Q ss_pred hHHHHHHhcccCCC-cChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhheeeeeccccccC
Q psy1087 40 LAKECVAQVEQADK-EKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELD 118 (454)
Q Consensus 40 ~~~~LI~~Lt~~~~-~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~~~~k~~~~~~~i~~~lr~~~~~~~~Df~ 118 (454)
++++||++|...+. .|..|+.+||.|||.||+..+||+.|.+||+.....+.+.....++..|. +++.|.+.++.||.
T Consensus 71 TlE~LVe~Ll~~~~~~D~~~~svFlaTyR~Ftst~~vL~llldRye~e~s~~~ses~~~v~naI~-il~~WL~~~pEDF~ 149 (728)
T KOG3629|consen 71 TLERLVECLLGSDDMMDSRHFSVFLATYRSFTSTAIVLDLLLDRYELENSVNGSESALLVQNAIR-ILMCWLETYPEDFY 149 (728)
T ss_pred hHHHHHHHHhcCCCCcchhHHHHHHHHhhcccccHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-HHHHHHHhChHhhc
Confidence 34999999877654 89999999999999999999999999999986554444433345566677 66777788999994
Q ss_pred --HHHHHHHHHHHHHHhcCCCCc-chhhhHHHHH-hhhhcccCCCCCccccccCCCCCCcccccCCCHHHHHHHHhHHHH
Q psy1087 119 --DNLVKYLTDFIYQLLSSGHFK-PARGLRVKLL-AKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDS 194 (454)
Q Consensus 119 --~~ll~~l~~Fl~~~~~~~~~~-~a~~l~~~ll-~k~~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~eiA~QLTl~d~ 194 (454)
++....+..+++.....+... -++......+ .+....+ ..+|.+.--......+.+++..+....||+|||++|.
T Consensus 150 ~~~~~~~~ls~lL~~g~~~~~~e~ra~a~l~r~~~~ri~~~~-~~LP~~~~~~~d~~~~~~dv~~f~~d~iAEQLT~~DA 228 (728)
T KOG3629|consen 150 DSDKDFAMLSSLLDFGGRNKLTELRAKARLQREVFKRIGGMQ-AALPSLGQYVADMGNKMFDVGKFNCDQIAEQLTFWDA 228 (728)
T ss_pred CccHHHHHHHHHHHhcCCCCcccchhHHHHHHHHHHhccccc-cCCCccccccCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence 356666666666544333222 1222211111 2222222 1233221111111246778888999999999999999
Q ss_pred HHhcCCChHHHH--HhhhhcC-CCCCchHHH-----------HHHHhhCCC-CHhhHHHHHHHHHHHHHHHhhcCChhhH
Q psy1087 195 DLFIKIEIPEVL--AWIEQQN-EEKSPNLTR-----------ARTRILEQN-EARDREKYVVKFIKIMKHLRKMNNFNSY 259 (454)
Q Consensus 195 ~lf~~I~~~E~l--~w~~~~~-~~~~pni~~-----------v~~~Il~~~-~~~~Ra~~i~kfI~vA~~~~~l~NFns~ 259 (454)
++|+++-|+.|+ .|++++. .+.+|.+.+ |+++||..+ .+.+||++|+|||+||.+|+-+.||.++
T Consensus 229 ~LFk~l~phqClGcvWs~Rd~~ghl~ptvrATi~QFN~vs~~Vvssilg~~lrp~qRAkiieKWI~iA~E~rllknfssl 308 (728)
T KOG3629|consen 229 ALFKELLPHQCLGCVWSKRDTAGHLVPTVRATIEQFNSVSQRVVSSILGPDLRPEQRAKIIEKWIDIARECRLLKNFSSL 308 (728)
T ss_pred HHHHHhhhHhcccceeccCCCcccccchHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999 6998764 467888766 788898864 6889999999999999999999999999
Q ss_pred HHHHhhcCcCcccccc--cccccHH---HHHHHHHHhCCCCcHHHHHHHHhcc-----------------------CCCc
Q psy1087 260 LGLLSALDSAPIRRLE--WQKHITE---GLKEYCALIDSTSSFRAYRQALAET-----------------------QPPC 311 (454)
Q Consensus 260 ~aI~sgL~~~~I~RLk--w~~~~~~---~l~~l~~l~~~~~n~~~yR~~l~~~-----------------------~~p~ 311 (454)
.||+++|++.+|+||| |..++.. .+++|.++++.++|+-+-|+.|-+. ....
T Consensus 309 ~avvsalqs~pihrlk~aw~~v~rdsls~f~els~ifse~~n~~~sReLL~qeGtsksspLe~s~k~a~~r~qr~~~qGt 388 (728)
T KOG3629|consen 309 KAVVSALQSEPIHRLKSAWNSVPRDSISQFRELSSIFSEDGNQGNSRELLIQEGTSKSSPLEASPKRAHARWQRQDKQGT 388 (728)
T ss_pred eeeeccccccHHHHHHhhhccCchhHHHHHHHHHhhcccccCCcchhHHHHHhcccccCCCCcchhhhhhhhhhccCCcc
Confidence 9999999999999999 9998864 5677888888899999989887541 1358
Q ss_pred ccchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhc--CCCCCCCchHHHHHHHhCCCC
Q psy1087 312 IPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRS--GVHKFPRHDRIIEFFSNFDDF 389 (454)
Q Consensus 312 IPflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~--~~Y~f~~~~~i~~~l~~~~~~ 389 (454)
|||+|.||+||+.+++..+++.++| +|||+|+|+-++++.+++.+|. ..|+++|++.++.|+.-++ .
T Consensus 389 VPyLGtFLtDLvMlDtA~~d~~e~g----------lINFeKRRkEFeVla~lrllQsaar~Ynl~pd~~f~aWf~~l~-~ 457 (728)
T KOG3629|consen 389 VPYLGTFLTDLVMLDTAMNDYPEEG----------LINFEKRRKEFEVLAKLRLLQSAARHYNLHPDEEFGAWFQVLE-Q 457 (728)
T ss_pred cchHHHHHHHHHHHhhcccCCcccc----------cchHhhhhHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHhcc-C
Confidence 9999999999999999999999988 9999999999999999999997 6899999999999999998 5
Q ss_pred CCHHHHHHhhhhcc
Q psy1087 390 LSEEAMARTRILEQ 403 (454)
Q Consensus 390 ~~e~~ly~~Sl~~~ 403 (454)
++|++-|..|+..+
T Consensus 458 ltE~es~~~s~eiE 471 (728)
T KOG3629|consen 458 LTEDESIIQSCEIE 471 (728)
T ss_pred CcHHHHHHHhhccc
Confidence 89999999999533
No 4
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=100.00 E-value=2e-38 Score=294.26 Aligned_cols=168 Identities=40% Similarity=0.780 Sum_probs=148.2
Q ss_pred cCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCC-CCchHHH-----------HHHHhhCCCCHhhHHHHHHHH
Q psy1087 178 LAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEE-KSPNLTR-----------ARTRILEQNEARDREKYVVKF 243 (454)
Q Consensus 178 l~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~-~~pni~~-----------v~~~Il~~~~~~~Ra~~i~kf 243 (454)
++++|.+||+|||++|+++|++|+|.|++ .|.+.+... .+||+.+ |+.+||.++++++|++++++|
T Consensus 1 ~~~~~~~iA~qlt~~~~~lf~~I~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~ 80 (188)
T PF00617_consen 1 LDIDPEEIARQLTLLDSELFRKIKPSELLYSVWSKSDKKENQSPNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEKF 80 (188)
T ss_dssp -CS-HHHHHHHHHHHHHHHHHTSSHHHHHGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCCccChhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHHH
Confidence 57899999999999999999999999999 565532222 4788776 889999999999999999999
Q ss_pred HHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccH---HHHHHHHHHhCCCCcHHHHHHHHhccCC-Ccccchhh
Q psy1087 244 IKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHIT---EGLKEYCALIDSTSSFRAYRQALAETQP-PCIPYIGL 317 (454)
Q Consensus 244 I~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~---~~l~~l~~l~~~~~n~~~yR~~l~~~~~-p~IPflg~ 317 (454)
|+||.+|+++|||+|+|||++||++++|.||+ |+.++. +.+++++.++++++||++||+++++..+ |||||+|+
T Consensus 81 I~va~~l~~l~Nf~s~~aI~~~L~s~~i~rL~~tw~~l~~~~~~~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~lg~ 160 (188)
T PF00617_consen 81 IQVAKKLYELGNFNSLMAILSALNSSSIQRLKKTWKSLSKKSKKTFEELESLFSPSNNYKNYREALKKCNPQPCIPFLGI 160 (188)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHTSHHHHT-HHHHHTSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--HHH
T ss_pred HhHHHHHHHhcCchHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHhhcccchhhHHHHHhhcccccCceecccHH
Confidence 99999999999999999999999999999998 998865 5688899999999999999999998887 99999999
Q ss_pred hhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhh
Q psy1087 318 VLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQ 355 (454)
Q Consensus 318 ~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~ 355 (454)
+++|++++++|+|+++++| +|||.|+|+
T Consensus 161 ~l~dl~~~~~~~~~~~~~~----------liN~~K~r~ 188 (188)
T PF00617_consen 161 FLKDLIFIEEGNPDFIDDG----------LINFEKCRK 188 (188)
T ss_dssp HHHHHHHHHHHS-SECTTT----------CEEHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCc----------cCCcccccC
Confidence 9999999999999999877 999999985
No 5
>KOG2378|consensus
Probab=100.00 E-value=2.4e-33 Score=277.49 Aligned_cols=221 Identities=26% Similarity=0.420 Sum_probs=195.6
Q ss_pred cccccCCCHHHHHHHHhHHHHHHhcCCChHHHHHhhhh---cCCCCCchHHH-----------HHHHhhCCCCHhhHHHH
Q psy1087 174 HYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQ---QNEEKSPNLTR-----------ARTRILEQNEARDREKY 239 (454)
Q Consensus 174 ~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~w~~~---~~~~~~pni~~-----------v~~~Il~~~~~~~Ra~~ 239 (454)
...|.-+++.++|-|||++||++|+.|+..|++.+.-. .....+-|+.. |+++|+.++.+.+|+++
T Consensus 330 ~~~l~lv~s~dlA~qLt~fdw~Lfnsih~~ElI~y~i~~q~~~~~~tanleLl~~R~neVq~wv~tei~lc~ql~kr~ql 409 (573)
T KOG2378|consen 330 SSILHLVSSKDLAHQLTLFDWSLFNSIHENELIHYVIGGQIPCDRNTANLELLLRRFNEVQHWVATEILLCQQLGKRCQL 409 (573)
T ss_pred cceeeeccHHHHHHHHHHHHHHHHhhhhHhHhhHhhhcccCCCCccchhHHHHHHHHhhchhhhhchhhhhcchhHHHHH
Confidence 34455599999999999999999999999999855432 22334556543 88999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--ccccc---HHHHHHHHHHhCCCCcHHHHHHHHhccCCCcccc
Q psy1087 240 VVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHI---TEGLKEYCALIDSTSSFRAYRQALAETQPPCIPY 314 (454)
Q Consensus 240 i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~---~~~l~~l~~l~~~~~n~~~yR~~l~~~~~p~IPf 314 (454)
++|||++|..|++-.|.++++||+.||++.+|+||. |++++ ++.+.+++.+++|..|++.||.+.++..||.|||
T Consensus 410 lkkfiKiaal~ke~~~l~sffAV~~GL~~~avSrl~~tweklP~k~kk~~s~~enl~dP~~nhr~yR~l~~km~pp~ipf 489 (573)
T KOG2378|consen 410 LKKFIKIAALCKEGENLNSFFAVVMGLSNRAVSRLDLTWEKLPYKFKKLFSELENLLDPCRNHRTYRLLSSKMSPPYIPF 489 (573)
T ss_pred HHHHHHHHHHHHhhccccchHHHhhcchhHHHHhhhcccccCchHHHhHHHHHHhcCCchhhhHHHHHHHHhcCCCCCCc
Confidence 999999999999999999999999999999999998 99987 4678999999999999999999999999999999
Q ss_pred hhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCC-CCC--chHHHHHHHhCCCCCC
Q psy1087 315 IGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHK-FPR--HDRIIEFFSNFDDFLS 391 (454)
Q Consensus 315 lg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~-f~~--~~~i~~~l~~~~~~~~ 391 (454)
+.+.++|++|+++||.+++ +| +|||+|++++++.++.++.|.+.|++ -.+ ..+.+.|++++..+-+
T Consensus 490 ~PlllkD~tf~heGnkt~v-~g----------lVNfEKmhmiA~~~Rt~r~cRS~p~~~~a~~~h~e~rSyVrql~VIDn 558 (573)
T KOG2378|consen 490 MPLLLKDLTFIHEGNKTFV-DG----------LVNFEKMHMIAKTARTLRHCRSQPLNPGAPHEHQETRSYVRQLRVIDN 558 (573)
T ss_pred cchhhhhceeeccchHHHH-hc----------chhHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHhhHeeecc
Confidence 9999999999999999997 66 99999999999999999999998887 333 3577889999986668
Q ss_pred HHHHHHhhhhcchhhh
Q psy1087 392 EEAMARTRILEQNEAR 407 (454)
Q Consensus 392 e~~ly~~Sl~~~~e~~ 407 (454)
...|+++|+ +.|||
T Consensus 559 Q~~L~qLS~--~lEpr 572 (573)
T KOG2378|consen 559 QRKLSQLSY--ELEPR 572 (573)
T ss_pred HHHHHHHhh--hcCCC
Confidence 999999999 46665
No 6
>KOG3542|consensus
Probab=100.00 E-value=3.2e-33 Score=286.30 Aligned_cols=187 Identities=32% Similarity=0.529 Sum_probs=170.5
Q ss_pred ccccCCCHHHHHHHHhHHHHHHhcCCChHHHH-HhhhhcCCCCCchHHH-----------HHHHhhCCCCHhhHHHHHHH
Q psy1087 175 YTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL-AWIEQQNEEKSPNLTR-----------ARTRILEQNEARDREKYVVK 242 (454)
Q Consensus 175 ~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l-~w~~~~~~~~~pni~~-----------v~~~Il~~~~~~~Ra~~i~k 242 (454)
..+++++..++|.|||+-|+++|++|.|.|++ ..-|-+.+..+|++.+ |+++||.+.+..+|+++|++
T Consensus 862 ~slLqLst~eVAtQLsmrdF~lFrnIEPTEyiDdLFKL~SKtg~~~LkrFE~l~NqEtfWVAsEIltE~nqlKRmKiIKh 941 (1283)
T KOG3542|consen 862 TSLLQLSTQEVATQLSMRDFSLFRNIEPTEYIDDLFKLDSKTGSPKLKRFEQLFNQETFWVASEILTERNQLKRMKIIKH 941 (1283)
T ss_pred HhHhhhHHHHHHHHhhhhhhhhHhcCChHHHHHHHHhhccccCCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999998 3434455567888876 89999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccH---HHHHHHHHHhCCCCcHHHHHHHHhc--cCCCcccch
Q psy1087 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHIT---EGLKEYCALIDSTSSFRAYRQALAE--TQPPCIPYI 315 (454)
Q Consensus 243 fI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~---~~l~~l~~l~~~~~n~~~yR~~l~~--~~~p~IPfl 315 (454)
||+||.+|++.+|||+++||++||+.++|.||. |++++. +.++++++|++|++|+.+||+.|.. ..||.||.+
T Consensus 942 FIKiAlhCReckNFNSMFAIiSGLnla~VaRLr~tWEklpsKYek~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPiiPlf 1021 (1283)
T KOG3542|consen 942 FIKIALHCRECKNFNSMFAIISGLNLAAVARLRSTWEKLPSKYEKMLQDLQDLFDPSRNMAKYRNHLASQAQQPPIIPLF 1021 (1283)
T ss_pred HHHHHHHHHHhcchhhHHHHHhcCchHHHHHHhhhHhhccHHHHHHHHHHHHhhCchhhHHHHHHHHHhhccCCCccccc
Confidence 999999999999999999999999999999998 999985 5688999999999999999999986 479999999
Q ss_pred hhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCC
Q psy1087 316 GLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHK 372 (454)
Q Consensus 316 g~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~ 372 (454)
.++-+||+|++|||.++. +| +|||+|+|.|++-|+.+.+.-..+|.
T Consensus 1022 PViKKDlTFlHeGNdskv-dg----------LvNFEKLRmIaKeIR~V~rmsSanmd 1067 (1283)
T KOG3542|consen 1022 PVIKKDLTFLHEGNDSKV-DG----------LVNFEKLRMIAKEIRGVMRMSSANMD 1067 (1283)
T ss_pred hheeccceeeecCCchhh-hc----------cccHHHHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999886 67 99999999999999998887665554
No 7
>KOG3541|consensus
Probab=100.00 E-value=4.8e-32 Score=265.69 Aligned_cols=361 Identities=18% Similarity=0.207 Sum_probs=256.5
Q ss_pred hHHHHHHhcccC--CCcCh--hhHHHHHhhcccCCChHHHHHHHHHHhc-cCC---CC--hhHHHHHHHH----HHhhhh
Q psy1087 40 LAKECVAQVEQA--DKEKH--LYQDAFLTTFRTFKTPLEIIKKLIDRYH-KFV---SS--SEVQKQRAAR----ETFSFL 105 (454)
Q Consensus 40 ~~~~LI~~Lt~~--~~~D~--~f~~~FLlTyrsFttp~~LL~~Li~Rf~-~~~---~~--~~~~k~~~~~----~~i~~~ 105 (454)
.+++++.+|..+ ..+|. -|+-.++..-|+|+.|++++..+.+-=- ... .. ....++..+- ....-.
T Consensus 30 srda~~~hlvptrd~~~dr~~c~I~S~~~ssd~~~~p~d~la~vgq~~i~~ke~~~~g~~~l~aa~~~~f~l~a~~hqrl 109 (477)
T KOG3541|consen 30 SRDADKCHLVPTRDRRPDRRRCYIFSNLSSSDSFSAPHDLLAEVGQSGIDSKEALAGGGAGLQAAQGGIFSLDAGHHQRL 109 (477)
T ss_pred ccccchhhcCCccccCCccceeecccccccccccCCcHHHHHHHHhcccCchhhhcCCCcchhhhhhhhhccCChHHHHH
Confidence 349999999754 33787 7788899999999999999966654321 100 00 1111111000 001123
Q ss_pred heeeeeccccccCH-HHHHHHHHHHH----HHhcC-CC--Ccchh--------------hhHHHHHhhhhcccCCCCCcc
Q psy1087 106 VQVVSELTVYELDD-NLVKYLTDFIY----QLLSS-GH--FKPAR--------------GLRVKLLAKYDCKNNESVKNE 163 (454)
Q Consensus 106 lr~~~~~~~~Df~~-~ll~~l~~Fl~----~~~~~-~~--~~~a~--------------~l~~~ll~k~~~~~~~~~~~~ 163 (454)
+.-|.+-.++||.. .++..+.+... ..... +. ..+.+ ++...++++.......-...+
T Consensus 110 ~~ew~~nipydf~he~~~~el~~l~~~r~t~~l~t~~sv~~~~~ql~q~klp~~r~~rSQl~~nll~kl~~~~~a~~q~~ 189 (477)
T KOG3541|consen 110 LAEWGGNIPYDFRHEAEQLELYDLEMGRQTLELGTTISVGPKIEQLVQYKLPKNRHKRSQLDINLLSKLLGSGGAMYQNG 189 (477)
T ss_pred HHHHhhcCCCchhhHHHHHHHHHHHhhhHHHhhhccccccccHHHHHHhhcccchhhHhHhhHHHHHHhhcCCccccccc
Confidence 55677778999954 45555554322 11111 00 00000 111112222221100000012
Q ss_pred ccccCCCCC--CcccccCCCHHHHHHHHhHHHHHHhcCCChHHHHHhhhhcC--------CC----CCch---HHH----
Q psy1087 164 ILSSLNVYT--THYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQN--------EE----KSPN---LTR---- 222 (454)
Q Consensus 164 ~l~~~~~~~--~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~w~~~~~--------~~----~~pn---i~~---- 222 (454)
++.+.++.. .+..-.+.++.++|+|||.++++.+..|.+.|+..--..+. .. +.|. +.+
T Consensus 190 i~~~kpl~a~~~~ll~~c~dal~laqqlt~Ie~~rls~i~~EelvqiL~sdp~sei~~~~~~~l~~k~~~~ysie~y~~w 269 (477)
T KOG3541|consen 190 IIVSKPLAALIETLLPKCVDALDLAQQLTHIESCRLSLIPHEELVQILDSDPESEILESLVGLLAMKFPYDYSIERYMSW 269 (477)
T ss_pred ccccCCchHHHhhhhhccccHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCcHHHHHHHhhhhhhccCcccccHHHHHHH
Confidence 222222111 22333568899999999999999999999999873221111 01 1221 221
Q ss_pred -------HHHHhhCCCCHhhHHHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccHHHHHHHHHHhCC
Q psy1087 223 -------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLKEYCALIDS 293 (454)
Q Consensus 223 -------v~~~Il~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~~~l~~l~~l~~~ 293 (454)
+++++|.....+.|++++++||++|.+|.++||||++|||+.|++-++|.||| |.++...+++.++.-++|
T Consensus 270 fn~Lsa~~Atevlk~~kk~~rsamlef~iD~arec~nignfnSmmai~~~lnL~avarlkktw~kv~taK~e~lehqmdp 349 (477)
T KOG3541|consen 270 FNHLSALCATEVLKAAKKQTRSAMLEFLIDLARECFNIGNFNSMMAIGPGLNLNAVARLKKTWIKVRTAKFEALEHQMDP 349 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 78999999889999999999999999999999999999999999999999998 999999999999999999
Q ss_pred CCcHHHHHHHHhcc-----------CCCcccchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHH
Q psy1087 294 TSSFRAYRQALAET-----------QPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQN 362 (454)
Q Consensus 294 ~~n~~~yR~~l~~~-----------~~p~IPflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~ 362 (454)
+.||-+||.+++.+ ....|||+.++|+|+.+++++.+.++++| .|||.|+..|...+++
T Consensus 350 s~nflsyr~t~Kaa~wrs~sang~~ekaviPff~l~Lkdl~~i~~~h~~~l~Ng----------hinf~k~~~i~~qlr~ 419 (477)
T KOG3541|consen 350 SSNFLSYRLTDKAAKWRSPSANGAPEKAVIPFFTLFLKDLLDISARHRLFLPNG----------HINFLKFVGIEGQLRT 419 (477)
T ss_pred hhhhHHHHHHHHHHhhcCccccCCCccccccchhhhHHHHHHHHhhhcccCCCc----------hhHHHHHHhHHhhhhh
Confidence 99999999988752 23479999999999999999999999999 9999999999999999
Q ss_pred HHHhhcCCCCCCCchHHHHHHHhCCCCCCHHHHHHhhhhcchhhhhhHH
Q psy1087 363 MKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREK 411 (454)
Q Consensus 363 i~~~Q~~~Y~f~~~~~i~~~l~~~~~~~~e~~ly~~Sl~~~~e~~~rek 411 (454)
+..|++...+|+.++.++.|+...+ .++|+.++.+|+.++++..--||
T Consensus 420 v~~W~~v~c~fek~p~v~sylliae-vlse~alm~~sfe~epPen~~ek 467 (477)
T KOG3541|consen 420 VELWSGVACPFEKVPNVNSYLLIAE-VLSEPALMRASFESEPPENIYEK 467 (477)
T ss_pred hhhhhcccchHhhCchHHhHHhhhh-hcccchhhhheecccCCcchhHH
Confidence 9999999999999999999999998 69999999999965555555566
No 8
>KOG3417|consensus
Probab=99.83 E-value=1.1e-20 Score=211.77 Aligned_cols=224 Identities=24% Similarity=0.428 Sum_probs=192.0
Q ss_pred CCCcccccCCCHHHHHHHHhH-HHHHHhcCCChHHHH--HhhhhcCCCCCchHHH-----------HHHHhhCCCCHhhH
Q psy1087 171 YTTHYTLLAFKSEHIAEQMTL-LDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-----------ARTRILEQNEARDR 236 (454)
Q Consensus 171 ~~~~~~ll~~~~~eiA~QLTl-~d~~lf~~I~~~E~l--~w~~~~~~~~~pni~~-----------v~~~Il~~~~~~~R 236 (454)
....+.+...+|.++|+|+|. +|...|++|.+.|++ +|.++++...+||+.+ |..+|+..+.++.|
T Consensus 205 ~~~~f~~~~~~~~e~~~~lt~lle~~~~~~iq~~e~~~~~~~~~~~~~~~P~~~~~~~~~~~~s~wv~~~il~~e~l~~r 284 (840)
T KOG3417|consen 205 DARIFDFLRLTPRELSEQLTSLLESPDFRKIQPFELLSQSWLKKDKKINSPNIESSTSRFNHLSSWVEQEILNAEQLEER 284 (840)
T ss_pred hheeeeccccchhhhccccccccccccccccCHHHHHHhhhhhcccccCCCchhhhhhcccchHHHHHHHHhccccHHHH
Confidence 345678889999999999996 999999999999997 8999988888999876 78999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--ccccc---HHHHHHHHHHhCCCCcHHHHHHHHhccCC-C
Q psy1087 237 EKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHI---TEGLKEYCALIDSTSSFRAYRQALAETQP-P 310 (454)
Q Consensus 237 a~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~---~~~l~~l~~l~~~~~n~~~yR~~l~~~~~-p 310 (454)
+.++.+++++|.++.+++|||++|++++|++++++.||+ |..+. .+.+..+..++....+|++||..+..++. |
T Consensus 285 ~~~~~~~L~~a~~~~el~n~~~~~~~v~~~~~s~i~~L~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~yr~~l~~~~~~~ 364 (840)
T KOG3417|consen 285 AEVILHFLEVAAKLSELNNLNSLMEVVSGLQSSPISRLKKTGSYLSSEIKKKLILLTELTSLLDNVQNYRRYLQSCNISP 364 (840)
T ss_pred HHhhHHHHHHhhhhhhccccccHHHHHhccccchhhhhhhhhccccccchhhhhhHHHHhhcchHHHHHHHHhhhcccCc
Confidence 999999999999999999999999999999999999999 76544 35666777777777799999999999988 9
Q ss_pred cccchhhhhhh-HHHHhhcCCCCCC-CCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCCCCCchHHHH---HHHh
Q psy1087 311 CIPYIGLVLQD-LTFVHIGNPHLLP-CNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIE---FFSN 385 (454)
Q Consensus 311 ~IPflg~~L~D-L~~i~egn~~~~~-~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~f~~~~~i~~---~l~~ 385 (454)
|||++|+++.| ++.++.++|+... .| ...++|.|+..+++++.+++.+|+..| ..+.+..++ ++..
T Consensus 365 ~ip~~~~~l~d~~~~l~~~~p~~~~~~~--------~~e~~~~~~~~~~~i~~elq~l~~~~~-~~~~e~~~~~~~~~~~ 435 (840)
T KOG3417|consen 365 CIPILGVYLLDSLVKLNEALPTKLLRIG--------ERELSFSKLKVLLEIISELQDLQNKEL-HAPLEKVDKGTPLISS 435 (840)
T ss_pred cccccccccHHHHHhhhhcCCccccccc--------cccccchhhhHHHHHHHHHHHHhcccc-ccchhhhcCccccccc
Confidence 99999999999 9999999999875 33 448999999999999999999998776 444444444 3331
Q ss_pred CC-----CCCCHHHHHHhhhhcc
Q psy1087 386 FD-----DFLSEEAMARTRILEQ 403 (454)
Q Consensus 386 ~~-----~~~~e~~ly~~Sl~~~ 403 (454)
.. ....+|++|+.|++.+
T Consensus 436 ~~~~~~~~~~~~d~l~~~sl~~e 458 (840)
T KOG3417|consen 436 NLDLEELERITEDALYEESLLLE 458 (840)
T ss_pred cccHHHHHhcccccccccchhcC
Confidence 11 1356899999999643
No 9
>KOG3417|consensus
Probab=99.60 E-value=5.4e-15 Score=166.03 Aligned_cols=315 Identities=30% Similarity=0.404 Sum_probs=201.4
Q ss_pred hhhHHHHHhhcccCCChHHHHHHHHHHhccC--CCChhHHHHHHHHHHhhhhheeeeeccccccCHHHHHHHHHHHHHHh
Q psy1087 56 HLYQDAFLTTFRTFKTPLEIIKKLIDRYHKF--VSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLL 133 (454)
Q Consensus 56 ~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~--~~~~~~~k~~~~~~~i~~~lr~~~~~~~~Df~~~ll~~l~~Fl~~~~ 133 (454)
..+-.+++.+|..|..+.+....++...-.. .......++......+...++........|.+.........+....+
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v 574 (840)
T KOG3417|consen 495 LKFDHIRLNTDSLFVHSLELFYILIKHKLLMRYTNPMQNSKQKEEKETFAGRVRLVDIFEPFDLDSDGLISLDESVQESV 574 (840)
T ss_pred ccceeecccccccccchhhhhhhHHHHHHhhhhhhhhhhHHHHHHhhchhhhhhhhhcccccccCccccccchhhhhhhh
Confidence 3366789999999999999999888872111 01111222333334455556666555566666544443443333333
Q ss_pred cCCCCcchhhhHHHHHhhhhcccCCCCCccccccCCCCCCcccccCCCHHHHHHHHhHHHHHHhcCCChHHHHHhhhhcC
Q psy1087 134 SSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQN 213 (454)
Q Consensus 134 ~~~~~~~a~~l~~~ll~k~~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~w~~~~~ 213 (454)
..+....++..+ ......-.+.+..+... ..+. + ...+++.++|+++...+-.+...+...|.+...
T Consensus 575 ~~~~~~~s~~~~-------~~~~~~~~~~~~~~~~~-~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 641 (840)
T KOG3417|consen 575 SAGSNTLSRVLR-------ELFTQSFLESSYLTFTS-CAKR----D-KSAEIACQLTLLDAILTMEICIPRSLLWAKVQN 641 (840)
T ss_pred hhhchhhhhhhc-------ccccchhcccccccccc-cccc----h-hHHHHHhhhhhhhhHhhhchhhhhHHHHhhhhh
Confidence 222111111000 00000000011111000 0011 5 778899999999999988888777777776544
Q ss_pred CCCCchHHH----------HHHHhhCC-CCHhhHHHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--ccccc
Q psy1087 214 EEKSPNLTR----------ARTRILEQ-NEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHI 280 (454)
Q Consensus 214 ~~~~pni~~----------v~~~Il~~-~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~ 280 (454)
....++-.+ +.+.++.. .....| ++.++++|..++||.++++|.++|.+++++|+. |....
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s------~~~~~~~~~~~~~~~~l~~~~s~l~s~~~~~~~~~~~l~~ 715 (840)
T KOG3417|consen 642 EEKSKKDLAFTETFNLVSFWSSTIILTQQPAKRS------FIHVAKFCKIMKNFRTLMNINSALASSPIHRSTPLWRLEW 715 (840)
T ss_pred cccccchHHHHHHHhhhhhhhHHhhhccccccch------hHHHHhhhhhhCchhhhhHHHHHhccchhhhcchhhcccc
Confidence 444443322 34444443 334444 999999999999999999999999999999997 76544
Q ss_pred HHH---HHHHHHHh-CCCCcHHHHHHHHhccCCCcccchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhh
Q psy1087 281 TEG---LKEYCALI-DSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQ 356 (454)
Q Consensus 281 ~~~---l~~l~~l~-~~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i 356 (454)
.+. +..+..++ ++..++..||..+..+.+||+||+|++|+||+|.+.|||+++ ++ ..+.+||.|+..+
T Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~dltf~~~gnpd~~-~~-------~~~~~~~~~~~~~ 787 (840)
T KOG3417|consen 716 PKDIREFSALSPLVIDKSNSSTYRRALLSVPEPPCVPFLGVILQDLTFVHTGNPDYL-DS-------VVNHGKFDKRTNI 787 (840)
T ss_pred hhhHHHhhccccchhcccccHHHHHHHhcCCCCCCcCceeEEeecceeecCCCCCcc-cc-------ccchhHHHHHHHH
Confidence 333 33333344 444455555555666899999999999999999999999998 44 1347888888888
Q ss_pred hHHHHHHHHhhcCCCCCCCchHHHHHHHhCCCCCCHHHHHHhhh
Q psy1087 357 FNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRI 400 (454)
Q Consensus 357 ~~ii~~i~~~Q~~~Y~f~~~~~i~~~l~~~~~~~~e~~ly~~Sl 400 (454)
..+++.+..+|-..|.+.+....+..+.... .+.+.+++++
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 828 (840)
T KOG3417|consen 788 KDIVQEVQKFQYVGYKVNPIIDFQNDINKSL---REEEKWELSL 828 (840)
T ss_pred HHHHHHHHHhcccccccCcchhhhhHHHHHH---HHHHHHHHHH
Confidence 8999999999888888888888777766543 6677777777
No 10
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=99.50 E-value=1.1e-13 Score=119.35 Aligned_cols=95 Identities=23% Similarity=0.451 Sum_probs=78.9
Q ss_pred HHHHHHhcccCCC-cChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCCh------hHHHHHHHHHHhhhhheeeeecc
Q psy1087 41 AKECVAQVEQADK-EKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSS------EVQKQRAARETFSFLVQVVSELT 113 (454)
Q Consensus 41 ~~~LI~~Lt~~~~-~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~------~~~k~~~~~~~i~~~lr~~~~~~ 113 (454)
.++||++||+... .|+.|+++||+|||+|+||.+|+++|++||+.+.+.. ...+...++..+..+++.|.+.+
T Consensus 2 l~~Li~~L~~~~~~~d~~f~~~FllTyrsF~s~~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~Wv~~~ 81 (122)
T cd06224 2 LEALIEHLTSTFDMPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPENLEYNDWDKKKSKPIRLRVLNVLRTWVENY 81 (122)
T ss_pred HHHHHHHHcCCCccccHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3899999999987 8999999999999999999999999999999876543 11222334555667778888889
Q ss_pred cccc--CHHHHHHHHHHHHHHhcC
Q psy1087 114 VYEL--DDNLVKYLTDFIYQLLSS 135 (454)
Q Consensus 114 ~~Df--~~~ll~~l~~Fl~~~~~~ 135 (454)
+.|| |+.+++.+.+|+......
T Consensus 82 ~~df~~d~~l~~~l~~F~~~~~~~ 105 (122)
T cd06224 82 PYDFFDDEELLELLEEFLNRLVQE 105 (122)
T ss_pred CCcccccHHHHHHHHHHHHHHccc
Confidence 9999 889999999999987754
No 11
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=99.45 E-value=2.5e-13 Score=118.16 Aligned_cols=99 Identities=18% Similarity=0.277 Sum_probs=77.0
Q ss_pred ccchHHHHHHhcccCCC-cChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCChh-HHHH--HHHHHHhhhhheeeeec
Q psy1087 37 NEELAKECVAQVEQADK-EKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSE-VQKQ--RAARETFSFLVQVVSEL 112 (454)
Q Consensus 37 ~~~~~~~LI~~Lt~~~~-~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~~-~~k~--~~~~~~i~~~lr~~~~~ 112 (454)
.+++.++||++||+... .|+.|+.+||+|||+|+||.+|+++|++||+.+.+... +.+. ..++..+..+++.|.+.
T Consensus 6 ~~gtl~~Li~~L~~~~~~~d~~f~~~Flltyr~F~tp~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~rv~~~l~~Wv~~ 85 (127)
T smart00229 6 KGGTLEKLIEHLTEAFDKADPFFVETFLLTYRSFITTQELLQLLLYRYNAIPPESWVERKVNPLRVKNRVLNILRHWVEN 85 (127)
T ss_pred eeecHHHHHHHHcCCCcCCCHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34445999999999877 89999999999999999999999999999998765421 1111 12344556667778788
Q ss_pred cccccCH--HHHHHHHHHHHHHhcC
Q psy1087 113 TVYELDD--NLVKYLTDFIYQLLSS 135 (454)
Q Consensus 113 ~~~Df~~--~ll~~l~~Fl~~~~~~ 135 (454)
+++||++ .+...+.+|++.....
T Consensus 86 ~~~dF~~~~~l~~~l~~f~~~~~~~ 110 (127)
T smart00229 86 YWQDFEDDPKLILRLLEFLDLVDQE 110 (127)
T ss_pred CCcccccCHHHHHHHHHHHHHHhhC
Confidence 8889964 4899999999876544
No 12
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=99.45 E-value=1.1e-13 Score=116.34 Aligned_cols=90 Identities=23% Similarity=0.387 Sum_probs=65.8
Q ss_pred chHHHHHHhcccC-CCcChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCCh-hHH------HHHHHHHHhhhhheeee
Q psy1087 39 ELAKECVAQVEQA-DKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSS-EVQ------KQRAARETFSFLVQVVS 110 (454)
Q Consensus 39 ~~~~~LI~~Lt~~-~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~-~~~------k~~~~~~~i~~~lr~~~ 110 (454)
+++++||++||+. ...|..|+++||+|||+|+||.+|+++|++||+...+.. ... ....++..+..+++.|.
T Consensus 5 gtl~~Li~~L~~~~~~~d~~f~~~FllTyr~F~tp~~Ll~~L~~ry~~~~~~~~~~~~~~~~~~~~~i~~rv~~~l~~Wi 84 (104)
T PF00618_consen 5 GTLEKLIERLTSSFNSDDEEFVDTFLLTYRSFTTPEELLDKLIQRYNIPPPNGLSQDESWDQDSQEPIRLRVLNVLKYWI 84 (104)
T ss_dssp E-HHHHHHHHCHC-SS-HHHHHHHHHHHHHHCS-HHHHHHHHHHHHT---SSS-HHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHhcccccCCHHHHHHHHHHhHhhCCHHHHHHHHHHHhcccCCccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 3449999999999 668899999999999999999999999999996433222 111 11234555666777888
Q ss_pred eccccccCH--HHHHHHHHH
Q psy1087 111 ELTVYELDD--NLVKYLTDF 128 (454)
Q Consensus 111 ~~~~~Df~~--~ll~~l~~F 128 (454)
+.++.||.+ .+++.|.+|
T Consensus 85 ~~~~~df~~~~~l~~~l~~F 104 (104)
T PF00618_consen 85 ENYPDDFRDDPELLEKLKQF 104 (104)
T ss_dssp HHHCCCCHH-HHHHHHHHHH
T ss_pred HHChHhhCCCHHHHHHHHcC
Confidence 888889954 388988887
No 13
>KOG3542|consensus
Probab=97.23 E-value=0.00074 Score=71.72 Aligned_cols=85 Identities=18% Similarity=0.327 Sum_probs=61.3
Q ss_pred HHHHHhcccCCC-cChhhHHHHHhhcccCC-ChHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhheeeeecccccc--
Q psy1087 42 KECVAQVEQADK-EKHLYQDAFLTTFRTFK-TPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYEL-- 117 (454)
Q Consensus 42 ~~LI~~Lt~~~~-~D~~f~~~FLlTyrsFt-tp~~LL~~Li~Rf~~~~~~~~~~k~~~~~~~i~~~lr~~~~~~~~Df-- 117 (454)
++||-+|..+.+ .||.|++-||+|||.|. +|.++..+|.+-|..+. -.| + +..+++-|+ ..|+.||
T Consensus 430 erLimHLveEhs~VDPtyieDFLLTYRtFl~sP~~vg~KLleWF~d~s--lRD---K----VtRlVLLWV-NNHFNDFEg 499 (1283)
T KOG3542|consen 430 ERLIMHLVEEHSNVDPTYIEDFLLTYRTFLRSPTTVGEKLLEWFADSS--LRD---K----VTRLVLLWV-NNHFNDFEG 499 (1283)
T ss_pred HHHHHHHHhhcccCCchHHHHHHHHHHHHhcChHHHHHHHHHHhccch--Hhh---h----hheeeeeee-ccccccccC
Confidence 999999998644 89999999999999997 68899999999995421 111 1 122344444 4588888
Q ss_pred CHHHHHHHHHHHHHHhcCC
Q psy1087 118 DDNLVKYLTDFIYQLLSSG 136 (454)
Q Consensus 118 ~~~ll~~l~~Fl~~~~~~~ 136 (454)
|+.+-.-|..|=..+...+
T Consensus 500 dpaMtrfLEeFE~nLEr~k 518 (1283)
T KOG3542|consen 500 DPAMTRFLEEFEGNLERDK 518 (1283)
T ss_pred CHHHHHHHHHHhhhhhhcc
Confidence 5677777777766655443
No 14
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=97.13 E-value=0.0005 Score=63.36 Aligned_cols=48 Identities=40% Similarity=0.641 Sum_probs=43.8
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 399 RILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 399 Sl~~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
+.+.+..+++|-+.+.||++++++++.+||||+..||++||.+.+|++
T Consensus 63 ~Il~~~~~~~R~~~i~~~I~va~~l~~l~Nf~s~~aI~~~L~s~~i~r 110 (188)
T PF00617_consen 63 EILSQPDPEERAKIIEKFIQVAKKLYELGNFNSLMAILSALNSSSIQR 110 (188)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHT
T ss_pred HhhccccHHHHHHHHHHHHhHHHHHHHhcCchHHHHHHHHhccccccc
Confidence 444567889999999999999999999999999999999999999975
No 15
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=96.83 E-value=0.0012 Score=63.40 Aligned_cols=46 Identities=37% Similarity=0.616 Sum_probs=42.5
Q ss_pred hcchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 401 LEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 401 ~~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
+.+..+++|-+.+.||++++.+++.+||||+..||++||.+.+|..
T Consensus 66 l~~~~~~~R~~~i~~~I~ia~~l~~l~Nfns~~aI~~~L~~~~I~R 111 (237)
T cd00155 66 LLCTNPKKRARLLSKFIQVAKHCRELNNFNSLMAIVSALSSSPISR 111 (237)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCccchh
Confidence 4456689999999999999999999999999999999999999985
No 16
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=96.72 E-value=0.0017 Score=62.68 Aligned_cols=46 Identities=41% Similarity=0.694 Sum_probs=42.3
Q ss_pred hcchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 401 LEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 401 ~~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
+.+..+++|-+.+.||++++.++..+||||+..||++||.+++|+.
T Consensus 66 l~~~~~~~R~~~i~~fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~R 111 (242)
T smart00147 66 LKQTTPKDRAELLSKFIQVAKHCRELNNFNSLMAIVSALSSSPISR 111 (242)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCChHHhh
Confidence 3456688999999999999999999999999999999999999985
No 17
>KOG3629|consensus
Probab=63.32 E-value=4.1 Score=43.26 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=52.3
Q ss_pred CchHHHHHHHhCCCCCCHHHHHHhhhh-cchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhHH
Q psy1087 375 RHDRIIEFFSNFDDFLSEEAMARTRIL-EQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQT 447 (454)
Q Consensus 375 ~~~~i~~~l~~~~~~~~e~~ly~~Sl~-~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (454)
..+.|..-+.++.. .+.-..- |.+ -+..|..|-|..+|.|+|-...|-+.||-|--|++|||.|.|||..
T Consensus 253 l~ptvrATi~QFN~-vs~~Vvs--silg~~lrp~qRAkiieKWI~iA~E~rllknfssl~avvsalqs~pihrl 323 (728)
T KOG3629|consen 253 LVPTVRATIEQFNS-VSQRVVS--SILGPDLRPEQRAKIIEKWIDIARECRLLKNFSSLKAVVSALQSEPIHRL 323 (728)
T ss_pred ccchHHHHHHHHHH-HHHHHHH--HhhCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccceeeeccccccHHHHH
Confidence 34556665555542 2222111 222 3678888999999999999999999999999999999999999964
No 18
>KOG2378|consensus
Probab=33.55 E-value=42 Score=35.27 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=36.9
Q ss_pred hhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 404 NEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 404 ~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
..+..|-..+.||+||--|.|.-.|.||+.|++-.|+.+.+-.
T Consensus 401 ~ql~kr~qllkkfiKiaal~ke~~~l~sffAV~~GL~~~avSr 443 (573)
T KOG2378|consen 401 QQLGKRCQLLKKFIKIAALCKEGENLNSFFAVVMGLSNRAVSR 443 (573)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccccchHHHhhcchhHHHHh
Confidence 3445577889999999999999999999999999988776644
No 19
>KOG3541|consensus
Probab=28.95 E-value=70 Score=33.23 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=44.2
Q ss_pred CHhhHHHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCccccccccccc
Q psy1087 232 EARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHI 280 (454)
Q Consensus 232 ~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLkw~~~~ 280 (454)
.+..|.+-+..|-.|+..|.+..|+++..+|...+...++.|++++..+
T Consensus 412 ~i~~qlr~v~~W~~v~c~fek~p~v~sylliaevlse~alm~~sfe~ep 460 (477)
T KOG3541|consen 412 GIEGQLRTVELWSGVACPFEKVPNVNSYLLIAEVLSEPALMRASFESEP 460 (477)
T ss_pred hHHhhhhhhhhhhcccchHhhCchHHhHHhhhhhcccchhhhheecccC
Confidence 4567888899999999999999999999999999999999999977544
No 20
>PF09573 RE_TaqI: TaqI restriction endonuclease; InterPro: IPR019073 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease TaqI, which recognises and cleaves the double-stranded sequence T^CGA. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=25.41 E-value=1.2e+02 Score=28.66 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=37.6
Q ss_pred hhhhhhHHHHHHHHhhc------CCCCCCCchHHHHHHHhCCCCCCHHHHHHhhhhcchhhhhhHHHHHHHHHHHHhHHh
Q psy1087 352 KRRQQFNIVQNMKRFRS------GVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRK 425 (454)
Q Consensus 352 K~r~i~~ii~~i~~~Q~------~~Y~f~~~~~i~~~l~~~~~~~~e~~ly~~Sl~~~~e~~~rek~~~k~~~~~k~~~~ 425 (454)
-+|+-++--+.+.+-|+ .||.....+++++-+.+.. ..++-|++|+ |+.+|+++
T Consensus 157 tyR~EArs~nRF~rkq~~~aLveIPYtl~~~Eele~Ki~~aR---vk~~~Y~lw~-----------------k~a~~l~r 216 (247)
T PF09573_consen 157 TYRSEARSANRFLRKQQKSALVEIPYTLQTIEELEEKIQSAR---VKEETYQLWL-----------------KVAHHLIR 216 (247)
T ss_pred hhHHHhhhhhhHHHHhhcceEEEccccccCHHHHHHHhcccc---hhhHHHHHHH-----------------HHHHHHhh
Confidence 46777776666666665 5888887777777655443 2235555555 67778888
Q ss_pred hhh
Q psy1087 426 MNN 428 (454)
Q Consensus 426 ~~~ 428 (454)
++|
T Consensus 217 L~N 219 (247)
T PF09573_consen 217 LPN 219 (247)
T ss_pred CCC
Confidence 876
No 21
>KOG2387|consensus
Probab=21.45 E-value=86 Score=33.04 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=50.7
Q ss_pred HHhcCCChHHHHHhhhhcCCCCCchHHH------HHHHhhCCCC-HhhHHHHHHHHHHHHHHHhhcCC------------
Q psy1087 195 DLFIKIEIPEVLAWIEQQNEEKSPNLTR------ARTRILEQNE-ARDREKYVVKFIKIMKHLRKMNN------------ 255 (454)
Q Consensus 195 ~lf~~I~~~E~l~w~~~~~~~~~pni~~------v~~~Il~~~~-~~~Ra~~i~kfI~vA~~~~~l~N------------ 255 (454)
..|+.+.|...+.--.-...-..|-+.. ....+|.-.. ..+| .++.+|-.+|+.|..++.
T Consensus 231 s~FChV~~eqV~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~-~~l~~W~~~~~~~d~~~~~V~IalVGKYt~ 309 (585)
T KOG2387|consen 231 SMFCHVGPEQVVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSER-PMLDKWSNMAERYDDLQVPVRIALVGKYTK 309 (585)
T ss_pred hhhcccCHHHeeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccch-hhHHHHHHHHHhhhcccCcEEEEEEecccc
Confidence 5788998888763211111123343333 3444555433 3344 899999999999987743
Q ss_pred -hhhHHHHHhhcCcCccc
Q psy1087 256 -FNSYLGLLSALDSAPIR 272 (454)
Q Consensus 256 -Fns~~aI~sgL~~~~I~ 272 (454)
+.+..+++.||.+++++
T Consensus 310 l~DsY~Sv~KAL~Ha~~~ 327 (585)
T KOG2387|consen 310 LSDSYLSVVKALEHAALA 327 (585)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 67888999999999886
Done!