Query psy1087
Match_columns 454
No_of_seqs 232 out of 1244
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:31:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ii0_A SOS-1, SON of sevenless 100.0 4.3E-67 1.5E-71 552.5 23.6 377 23-409 22-462 (490)
2 3ksy_A SOS-1, SON of sevenless 100.0 2.6E-62 8.8E-67 556.7 26.2 378 22-408 580-1020(1049)
3 4f7z_A RAP guanine nucleotide 100.0 1.4E-60 4.6E-65 543.1 30.3 358 38-408 490-998 (999)
4 2ije_S Guanine nucleotide-rele 100.0 6.9E-55 2.4E-59 419.1 15.9 218 179-408 3-238 (240)
5 3cf6_E RAP guanine nucleotide 100.0 5.9E-51 2E-55 445.6 29.6 221 175-408 449-693 (694)
6 3qxl_A RAS-specific guanine nu 100.0 9.2E-52 3.1E-56 403.4 15.3 222 172-406 23-270 (271)
7 3t6g_A SH2 domain-containing p 99.3 2.6E-12 8.9E-17 124.8 7.3 106 176-281 44-172 (331)
8 3t6a_A Breast cancer anti-estr 99.3 3.2E-12 1.1E-16 124.2 6.4 106 176-281 43-171 (333)
9 2ije_S Guanine nucleotide-rele 97.7 2.8E-05 9.5E-10 73.9 4.5 45 402-446 66-110 (240)
10 3qxl_A RAS-specific guanine nu 97.7 2.7E-05 9.3E-10 75.3 4.5 46 401-446 92-137 (271)
11 2ii0_A SOS-1, SON of sevenless 97.2 0.00017 6E-09 75.4 4.4 46 401-446 281-326 (490)
12 4f7z_A RAP guanine nucleotide 97.1 0.00026 9E-09 80.3 4.6 46 401-446 820-865 (999)
13 3cf6_E RAP guanine nucleotide 97.0 0.00039 1.3E-08 75.8 4.4 46 401-446 515-560 (694)
14 3ksy_A SOS-1, SON of sevenless 96.7 0.00085 2.9E-08 76.5 4.4 46 401-446 840-885 (1049)
15 3t6a_A Breast cancer anti-estr 83.2 0.93 3.2E-05 44.1 4.2 41 405-445 119-160 (333)
16 3t6g_A SH2 domain-containing p 78.6 1.6 5.5E-05 42.4 4.1 40 405-444 120-160 (331)
17 2rpa_A Katanin P60 ATPase-cont 20.3 76 0.0026 24.0 3.1 49 240-288 12-70 (78)
No 1
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=4.3e-67 Score=552.49 Aligned_cols=377 Identities=23% Similarity=0.398 Sum_probs=292.3
Q ss_pred ccCCcccccCCC-------CCccchHHHHHHhcccCCCcChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCChhH---
Q psy1087 23 FCDDYFLYNNND-------EVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEV--- 92 (454)
Q Consensus 23 ~~~~~l~~~~~~-------~~~~~~~~~LI~~Lt~~~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~~~--- 92 (454)
+.+++|+|++++ .+.|+++++||++||++...|+.|+.+||+|||+||||.+||++|++||+.+.+...+
T Consensus 22 D~~~~ii~~~~~~~~~g~~~IkagTL~~LVe~Lt~~~~~D~~f~~~FLlTyRsF~tp~eLL~~Li~Ry~~~~p~~~~~~~ 101 (490)
T 2ii0_A 22 DSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADR 101 (490)
T ss_dssp CCTTTEEEC-------CCCCEEEECHHHHHHHHTCSSSCCHHHHHHHHHHGGGTSCHHHHHHHHHHHHCCCCCCCCHHHH
T ss_pred CCCCCeEEecCCCCcCCCceeeecCHHHHHHHHccCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccCCCchhhhh
Confidence 467789997764 2335555999999999888999999999999999999999999999999886543211
Q ss_pred -------------HH------HHHHHHHhhhhheeeeecccccc--CHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHhh
Q psy1087 93 -------------QK------QRAARETFSFLVQVVSELTVYEL--DDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAK 151 (454)
Q Consensus 93 -------------~k------~~~~~~~i~~~lr~~~~~~~~Df--~~~ll~~l~~Fl~~~~~~~~~~~a~~l~~~ll~k 151 (454)
.+ +..++..+..+++.|.+.+++|| ++.+++.|.+|+..+........+..+. +++++
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~~~~iq~rV~~vl~~Wv~~~~~DF~~d~~ll~~L~~F~~~~~~~~~~~~~~~l~-~~l~~ 180 (490)
T 2ii0_A 102 IAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT-KIIQR 180 (490)
T ss_dssp HHHHTTCSCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHTTCCCTTTHHHHHHHH-HHHHH
T ss_pred hhhccCCccchHHHHHHHHhhhhhHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHhccchhHHHHHHHHH-HHHHH
Confidence 01 12334456667788888889998 4689999999998753221111122232 22222
Q ss_pred -hhcccCC-------CCCcccccc---CCCCCCcccccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCc
Q psy1087 152 -YDCKNNE-------SVKNEILSS---LNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSP 218 (454)
Q Consensus 152 -~~~~~~~-------~~~~~~l~~---~~~~~~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~p 218 (454)
.....+. ..++|.++. .......+++++++|.|||+|||++|+++|++|+|.||+ .|++.++...+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~~p~elA~QLTlid~~lf~~I~~~E~l~~~w~~~~~~~~~p 260 (490)
T 2ii0_A 181 KKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSP 260 (490)
T ss_dssp HHHC----------CCSCCCCCCCCSSCTTCGGGCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGTGGGGGGSTTHHHHCH
T ss_pred HHhcccCCCCcccccCCCCCccccccCCCCCcccchhhccCHHHHHHHHHHHHHHHHHCCCHHHHHHHHhcCCCcCCCCc
Confidence 1111100 001111111 011124577899999999999999999999999999999 698765556789
Q ss_pred hHHH-----------HHHHhhCCCCHhhHHHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccHHHHH
Q psy1087 219 NLTR-----------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLK 285 (454)
Q Consensus 219 ni~~-----------v~~~Il~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~~~l~ 285 (454)
|+.+ |+++||.+.++++||++|++||+||.+|+++|||||+|||++||++++|+||+ |+.++.+..+
T Consensus 261 nl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~ 340 (490)
T 2ii0_A 261 NLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKK 340 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHH
T ss_pred cHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHH
Confidence 8765 88999999999999999999999999999999999999999999999999999 9999875544
Q ss_pred HHHHHhC-CCCcHHHHHHHHhccCCCcccchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHH
Q psy1087 286 EYCALID-STSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMK 364 (454)
Q Consensus 286 ~l~~l~~-~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~ 364 (454)
.++++.+ +++||++||+++++..+|||||+|+||+||+|+++|||+++++| +..+|||+|+|+++++|.+|+
T Consensus 341 ~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~-------~~~lINf~K~r~~~~ii~~i~ 413 (490)
T 2ii0_A 341 ILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRH-------GKELINFSKRRKVAEITGEIQ 413 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHHHTSCSEEEET-------TEEEEEHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhchHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHhcCCcccCCC-------CCeEEcHHHHHHHHHHHHHHH
Confidence 4444332 35789999999999999999999999999999999999998654 245999999999999999999
Q ss_pred HhhcCCCCCCCchHHHHHHHhCCCC--CC----HHHHHHhhhhcchhhhhh
Q psy1087 365 RFRSGVHKFPRHDRIIEFFSNFDDF--LS----EEAMARTRILEQNEARDR 409 (454)
Q Consensus 365 ~~Q~~~Y~f~~~~~i~~~l~~~~~~--~~----e~~ly~~Sl~~~~e~~~r 409 (454)
+||+.+|+|.++++|++||.+++.. .+ ||++|++|+ +.|||..
T Consensus 414 ~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~ed~ly~~Sl--~~EPr~~ 462 (490)
T 2ii0_A 414 QYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSL--EIEPRNP 462 (490)
T ss_dssp GGSSCCCSCCCCHHHHHHHHTCCTTTTSCHHHHHHHHHHHHH--HHSCCTT
T ss_pred HHhcCCCCCCccHHHHHHHHhccccccCchhhhHHHHHHHHH--hhCCCCC
Confidence 9999999999999999999987643 35 367999999 4666653
No 2
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=2.6e-62 Score=556.65 Aligned_cols=378 Identities=23% Similarity=0.385 Sum_probs=297.2
Q ss_pred hccCCcccccCC--C-----CCccchHHHHHHhcccCCCcChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCCh----
Q psy1087 22 KFCDDYFLYNNN--D-----EVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSS---- 90 (454)
Q Consensus 22 ~~~~~~l~~~~~--~-----~~~~~~~~~LI~~Lt~~~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~---- 90 (454)
++.+++|+|+++ + .+.|+++++||++||+++..|+.|+.+||+|||+||||.+||++|++||+.+.+..
T Consensus 580 ~d~~~~i~~~~~~~~~~~~~~IkagTL~~LVe~Lt~~~~~D~~f~~~FLlTyRsF~tp~elL~lLi~Ry~~~~p~~~~~~ 659 (1049)
T 3ksy_A 580 PDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEAD 659 (1049)
T ss_dssp CCCTTTEEECSSSCSSCCSCCEEEECHHHHHHHHTCSSCCCHHHHHHHHHSCTTTSCHHHHHHHHHHHHCCCCCCCCHHH
T ss_pred CCCCcceEEeccCCCCCCcceeeccCHHHHHHHHccccCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhccCCCccchhh
Confidence 457788999875 1 12245559999999999889999999999999999999999999999998865431
Q ss_pred ------------hHH------HHHHHHHHhhhhheeeeecccccc--CHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHh
Q psy1087 91 ------------EVQ------KQRAARETFSFLVQVVSELTVYEL--DDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLA 150 (454)
Q Consensus 91 ------------~~~------k~~~~~~~i~~~lr~~~~~~~~Df--~~~ll~~l~~Fl~~~~~~~~~~~a~~l~~~ll~ 150 (454)
.+. ++..++..+..+++.|.+.|++|| |+.++..|.+|+..+........+..+...+.+
T Consensus 660 ~~~~~~g~~~~~~~~~~~~~~~~~~ir~rV~~vLk~Wle~~~~DF~~d~~Ll~~L~~Fl~~~~~~~~~~~~~~l~~~l~~ 739 (1049)
T 3ksy_A 660 RIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQR 739 (1049)
T ss_dssp HHHTTSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHCCCTTHHHHHHHHHHHHHH
T ss_pred hhhccccccchhHHHHHHHHhhccchhhhHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 111 122344556677888888889998 578999999999985422211122233222222
Q ss_pred hhhcccC--------CCCCccccc--cCCCCCCcccccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCc
Q psy1087 151 KYDCKNN--------ESVKNEILS--SLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSP 218 (454)
Q Consensus 151 k~~~~~~--------~~~~~~~l~--~~~~~~~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~p 218 (454)
+.....+ ..+++++.. ........++|++++|.+||+|||++|+++|++|+|.||+ .|+++++...+|
T Consensus 740 ~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~ll~~~~~elA~QLTlid~~lf~~I~p~E~l~~~w~~~~~~~~~p 819 (1049)
T 3ksy_A 740 KKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSP 819 (1049)
T ss_dssp HHHHHCC---CCCCCCSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGGSSSTTTSSCHHHHCH
T ss_pred HhhccccCccccccCCCCCCchhhcccCccccCCcccccCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCcccCCc
Confidence 2211110 011111100 0011135678999999999999999999999999999999 798876656789
Q ss_pred hHHH-----------HHHHhhCCCCHhhHHHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccHHHHH
Q psy1087 219 NLTR-----------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLK 285 (454)
Q Consensus 219 ni~~-----------v~~~Il~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~~~l~ 285 (454)
|+.+ |+++||.++++++||++|++||+||.+|+++|||||+|||++||++++|+||+ |+.++.+..+
T Consensus 820 n~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~v~~~~~~ 899 (1049)
T 3ksy_A 820 NLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKK 899 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSHHHHTCTTTTTSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcccchhHhHHHHHHHCCHHHHH
Confidence 9866 78999999999999999999999999999999999999999999999999998 9999876555
Q ss_pred HHHHHhC-CCCcHHHHHHHHhccCCCcccchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHH
Q psy1087 286 EYCALID-STSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMK 364 (454)
Q Consensus 286 ~l~~l~~-~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~ 364 (454)
.++++.+ +++||++||++++++.+|||||+|+||+||+|+++|||++++++ +.++|||+|+|+++++|.+|+
T Consensus 900 ~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~eg~p~~~~~~-------~~~lINf~K~~~~~~ii~~i~ 972 (1049)
T 3ksy_A 900 ILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRH-------GKELINFSKRRKVAEITGEIQ 972 (1049)
T ss_dssp HHHHHHTTTHHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHHHHSCSEEEET-------TEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHhhCCCCccceeHHHHHHHHHHHccCCccccCC-------CCCeEcHHHHHHHHHHHHHHH
Confidence 5554444 45789999999999999999999999999999999999998642 134999999999999999999
Q ss_pred HhhcCCCCCCCchHHHHHHHhCCC--CCCH----HHHHHhhhhcchhhhh
Q psy1087 365 RFRSGVHKFPRHDRIIEFFSNFDD--FLSE----EAMARTRILEQNEARD 408 (454)
Q Consensus 365 ~~Q~~~Y~f~~~~~i~~~l~~~~~--~~~e----~~ly~~Sl~~~~e~~~ 408 (454)
+||+.+|+|+++++|++||.++.. .++| |++|++|+. .|||.
T Consensus 973 ~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~--~EPr~ 1020 (1049)
T 3ksy_A 973 QYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLE--IEPRN 1020 (1049)
T ss_dssp TTTSSCCCCCCCHHHHHHHHSCCTTTTSCHHHHHHHHHHHHHH--HSCCS
T ss_pred HHhcCCCCCCcchHHHHHHHhcccccccCchhhHHHHHHHHHH--hCCCC
Confidence 999999999999999999998653 2455 559999994 56654
No 3
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=1.4e-60 Score=543.11 Aligned_cols=358 Identities=20% Similarity=0.317 Sum_probs=281.7
Q ss_pred cchHHHHHHhcccCCC-------cChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCChhH--H--HHHHHHHHhhhhh
Q psy1087 38 EELAKECVAQVEQADK-------EKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEV--Q--KQRAARETFSFLV 106 (454)
Q Consensus 38 ~~~~~~LI~~Lt~~~~-------~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~~~--~--k~~~~~~~i~~~l 106 (454)
+++.++||++|+.... +|..|+++||+|||+|+||.+|+++|++||+.+.+.... . .....+..+..++
T Consensus 490 ~gT~ekLie~L~~~~~~~~~~~~~~~~f~~~FLlTyr~F~t~~~ll~~Li~r~~~~~~~~~~~~~~~~~~~~~~rv~~vl 569 (999)
T 4f7z_A 490 SGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIRLV 569 (999)
T ss_dssp EECHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHhcccccCcccccchhhHHHHHHHhccccCCcHHHHHHHHHHHcCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 4455999999986432 345699999999999999999999999999876543211 1 1112233455566
Q ss_pred eeeeecccccc--CHHHHHHHHHHHHHHhcCCCCcc-hhhhHH---HHHhhhhccc---------------------C--
Q psy1087 107 QVVSELTVYEL--DDNLVKYLTDFIYQLLSSGHFKP-ARGLRV---KLLAKYDCKN---------------------N-- 157 (454)
Q Consensus 107 r~~~~~~~~Df--~~~ll~~l~~Fl~~~~~~~~~~~-a~~l~~---~ll~k~~~~~---------------------~-- 157 (454)
+.|.+.++.|| |+.+...|..|...+........ ++.+.. .+.++..... .
T Consensus 570 ~~Wv~~~~~df~~d~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (999)
T 4f7z_A 570 LQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKR 649 (999)
T ss_dssp HHHHHHHGGGGGGCHHHHHHHHHHHHHHHHCSSCCHHHHTHHHHHHHHHHHTTSCSCCCCEECC-----------CCCCC
T ss_pred HHHHHhCCchhccCHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhhhccccccccccccchhhhcccccccccccc
Confidence 66777788898 57788888998887665332211 111110 1111100000 0
Q ss_pred CCCC----------------------------------------------------------cc----------------
Q psy1087 158 ESVK----------------------------------------------------------NE---------------- 163 (454)
Q Consensus 158 ~~~~----------------------------------------------------------~~---------------- 163 (454)
.+.. ++
T Consensus 650 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (999)
T 4f7z_A 650 QPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTINGRLF 729 (999)
T ss_dssp CCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCSCEEEEEECTTCCEEECCTTCBCCSTTSCTTCEEE
T ss_pred CCCCCccchhhhccccccccccccCCccccHHHHHHhhhhhccCCCcceeeccccCCccccCCccccccccccccccccc
Confidence 0000 00
Q ss_pred -----------cccc--CCCCCCcccccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCchHHH------
Q psy1087 164 -----------ILSS--LNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR------ 222 (454)
Q Consensus 164 -----------~l~~--~~~~~~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~pni~~------ 222 (454)
..|. .........+++++|.|||+|||++|+++|++|+|.||+ .|.++++...+|||.+
T Consensus 730 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~n 809 (999)
T 4f7z_A 730 ACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFN 809 (999)
T ss_dssp EEEGGGSSSCCCCTTTTCCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHCHHHHTCCCHHHHHHHHHHH
T ss_pred cccccccccCCCchhhcccccccccchhcCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhhcCCCCCCChHHHHHHHHHH
Confidence 0000 000112346889999999999999999999999999999 7988877888999877
Q ss_pred -----HHHHhhCCCCHhhHHHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccH---HHHHHHHHHhC
Q psy1087 223 -----ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHIT---EGLKEYCALID 292 (454)
Q Consensus 223 -----v~~~Il~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~---~~l~~l~~l~~ 292 (454)
|+++||.++++++||++|++||+||.+|+++|||||+|||++||++++|+||+ |+.++. +.+++|++|++
T Consensus 810 ~~~~wv~~~il~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~RL~~tw~~~~~~~~~~~~~l~~l~~ 889 (999)
T 4f7z_A 810 EIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMD 889 (999)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhhhHHHHHHHCCHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999999999 999875 56889999999
Q ss_pred CCCcHHHHHHHHhccCCCcccchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCC
Q psy1087 293 STSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHK 372 (454)
Q Consensus 293 ~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~ 372 (454)
+++||++||.+++++.+|||||+|+||+||+|+++|||+++ +| +|||+|+++++++|.+|++||+.||+
T Consensus 890 ~~~n~~~yr~~l~~~~~p~iP~~g~~l~dl~~~~~gn~~~~-~~----------linf~k~~~~~~~i~~i~~~q~~~y~ 958 (999)
T 4f7z_A 890 PSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFI-DN----------LVNFEKMRMIANTARTVRYYRSQPFN 958 (999)
T ss_dssp CHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHHHTSCSBS-SS----------SEEHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred CcccHHHHHHHHHhCCCCeeceehHHHHHHHHHhccCCCCC-CC----------cCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999998 56 99999999999999999999999999
Q ss_pred CCCch------HHHHHHHhCCCCCCHHHHHHhhhhcchhhhh
Q psy1087 373 FPRHD------RIIEFFSNFDDFLSEEAMARTRILEQNEARD 408 (454)
Q Consensus 373 f~~~~------~i~~~l~~~~~~~~e~~ly~~Sl~~~~e~~~ 408 (454)
+.+.+ +++.|+.+++...+|++||++|+ +.|||.
T Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~S~--~~EPr~ 998 (999)
T 4f7z_A 959 PDAAQANKNHQDVRSYVRQLNVIDNQRTLSQMSH--RLEPRR 998 (999)
T ss_dssp CSSCC--CCCHHHHHHHHTCCCCCCHHHHHHHHH--TTSCC-
T ss_pred CCccchhhhHHHHHHHHHhCCCCCCHHHHHHHHH--hcCCCC
Confidence 87654 68899999986678999999999 577764
No 4
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=6.9e-55 Score=419.12 Aligned_cols=218 Identities=27% Similarity=0.522 Sum_probs=204.1
Q ss_pred CCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCchHHH-----------HHHHhhCCCCHhhHHHHHHHHHH
Q psy1087 179 AFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-----------ARTRILEQNEARDREKYVVKFIK 245 (454)
Q Consensus 179 ~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~pni~~-----------v~~~Il~~~~~~~Ra~~i~kfI~ 245 (454)
.++|.|||+|||++|+++|++|+|.||+ .|++.++...+||+.+ |+++||.++++++||++|++||+
T Consensus 3 ~~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~ 82 (240)
T 2ije_S 3 LGSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVA 82 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999998 6988765567899876 88999999999999999999999
Q ss_pred HHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccH---HHHHHHHHHhCCCCcHHHHHHHHhccCCCcccchhhhhh
Q psy1087 246 IMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHIT---EGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQ 320 (454)
Q Consensus 246 vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~---~~l~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~ 320 (454)
||.+|+++|||||+|||++||++++|+||+ |+.++. +.+++|+.++++++||++||++++++.+|||||+|+||+
T Consensus 83 iA~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~ 162 (240)
T 2ije_S 83 VADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLT 162 (240)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHH
T ss_pred HHHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHH
Confidence 999999999999999999999999999998 999875 468899999999999999999999999999999999999
Q ss_pred hHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHhCCCCCCHHHHHHhhh
Q psy1087 321 DLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRI 400 (454)
Q Consensus 321 DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~f~~~~~i~~~l~~~~~~~~e~~ly~~Sl 400 (454)
||+|+++|||+++++| +|||+|+|+++++|.++++||+.+|+|+++++|++||.+.+...+||++|++|+
T Consensus 163 DL~~i~egnp~~~~~~----------lINf~K~~~~~~ii~~i~~~q~~~y~~~~~~~i~~~l~~~~~~~~e~~ly~~Sl 232 (240)
T 2ije_S 163 DLVFIEEGTPNYTEDG----------LVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESLYESSL 232 (240)
T ss_dssp HHHHHHHHSCSBCTTS----------CBCHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHCCTTCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCC----------cCcHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 9999999999998888 999999999999999999999999999999999999999876689999999999
Q ss_pred hcchhhhh
Q psy1087 401 LEQNEARD 408 (454)
Q Consensus 401 ~~~~e~~~ 408 (454)
+.|||.
T Consensus 233 --~~EPr~ 238 (240)
T 2ije_S 233 --LIEPKL 238 (240)
T ss_dssp --HHSCC-
T ss_pred --HhCCCC
Confidence 577764
No 5
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=5.9e-51 Score=445.64 Aligned_cols=221 Identities=26% Similarity=0.446 Sum_probs=202.8
Q ss_pred ccccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCchHHH-----------HHHHhhCCCCHhhHHHHHH
Q psy1087 175 YTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-----------ARTRILEQNEARDREKYVV 241 (454)
Q Consensus 175 ~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~pni~~-----------v~~~Il~~~~~~~Ra~~i~ 241 (454)
.++.+++|.+||+|||++|+++|++|+|.||+ .|++.+....+||+.+ |+++||.++++++||++|+
T Consensus 449 ~~l~~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~ 528 (694)
T 3cf6_E 449 GTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLK 528 (694)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CchhcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45889999999999999999999999999998 6998877778999876 8899999999999999999
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccH---HHHHHHHHHhCCCCcHHHHHHHHhccCCCcccchh
Q psy1087 242 KFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHIT---EGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIG 316 (454)
Q Consensus 242 kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~---~~l~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg 316 (454)
+||+||.+|+++|||||+|||++||++++|+||+ |+.++. +.+++|+.++++++||++||++++++.+|||||+|
T Consensus 529 ~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg 608 (694)
T 3cf6_E 529 KFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMP 608 (694)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCcccHH
Confidence 9999999999999999999999999999999999 999886 46889999999999999999999999999999999
Q ss_pred hhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCCCCC------chHHHHHHHhCCCCC
Q psy1087 317 LVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPR------HDRIIEFFSNFDDFL 390 (454)
Q Consensus 317 ~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~f~~------~~~i~~~l~~~~~~~ 390 (454)
+||+||+|+++|||+++ +| +|||+|+|+++++|..++.||+.+|++.+ .++|++||.+++...
T Consensus 609 ~~L~DL~fi~egn~~~~-~~----------lINf~K~r~i~~ii~~i~~~q~~~y~~~~~~~~~~~~~i~~~l~~l~~~~ 677 (694)
T 3cf6_E 609 LLIKDMTFTHEGNKTFI-DN----------LVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVID 677 (694)
T ss_dssp HHHHHHHHHHHHSCSEE-TT----------EEEHHHHHHHHHHHHHHHHHTSSCCC---------CHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHcCCCchh-cc----------CcCHHHHHHHHHHHHHHHHHhhCCCCcCccccccchHHHHHHHHhCCCCC
Confidence 99999999999999997 56 99999999999999999999999999876 578999999998656
Q ss_pred CHHHHHHhhhhcchhhhh
Q psy1087 391 SEEAMARTRILEQNEARD 408 (454)
Q Consensus 391 ~e~~ly~~Sl~~~~e~~~ 408 (454)
++++||++|+ +.|||.
T Consensus 678 ~e~~l~~lSl--~~EPr~ 693 (694)
T 3cf6_E 678 NQRTLSQMSH--RLEPRR 693 (694)
T ss_dssp CHHHHHHHHH--HHCC--
T ss_pred CHHHHHHHHH--hcCCCC
Confidence 7999999999 577764
No 6
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=9.2e-52 Score=403.43 Aligned_cols=222 Identities=23% Similarity=0.405 Sum_probs=199.7
Q ss_pred CCcccccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCchHHH-----------HHHHhhCCCCHhhHHH
Q psy1087 172 TTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-----------ARTRILEQNEARDREK 238 (454)
Q Consensus 172 ~~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~pni~~-----------v~~~Il~~~~~~~Ra~ 238 (454)
...+++++++|.|||+|||++|+++|++|+|.||+ .|+++++...+||+.+ |+++||.++++++||+
T Consensus 23 ~~~fdil~~~p~elA~QLTlid~~lF~~I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~ 102 (271)
T 3qxl_A 23 AVVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAE 102 (271)
T ss_dssp ---CCGGGSCHHHHHHHHHHHHHHHHHTCCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHH
Confidence 34678999999999999999999999999999999 5887655557899876 8999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccH---HHHHHHHHHhCCCCcHHHHHHHHhccC-CCcc
Q psy1087 239 YVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHIT---EGLKEYCALIDSTSSFRAYRQALAETQ-PPCI 312 (454)
Q Consensus 239 ~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~---~~l~~l~~l~~~~~n~~~yR~~l~~~~-~p~I 312 (454)
+|++||+||.+|+++|||||+|||++||++++|+||+ |+.++. +.+++|++++++++||++||+++++.. +|||
T Consensus 103 ~i~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~I 182 (271)
T 3qxl_A 103 ILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSI 182 (271)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCB
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999998 999875 568899999999999999999999875 8999
Q ss_pred cchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcC-CCC-CCCchHHHHHHHhCCCC-
Q psy1087 313 PYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSG-VHK-FPRHDRIIEFFSNFDDF- 389 (454)
Q Consensus 313 Pflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~-~Y~-f~~~~~i~~~l~~~~~~- 389 (454)
||+|+||+||+|+++|||++ +| .++||.|++++++++++|+.||+. +|+ |++++.||+||.+.+..
T Consensus 183 Pflg~~L~DL~fi~~g~p~~--~~---------~l~n~~k~~~~~~i~~~I~~~Q~~~~Y~~~~~~~~iq~~l~~~~~i~ 251 (271)
T 3qxl_A 183 PYLGIYLLDLIYIDSAYPAS--GS---------IMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIE 251 (271)
T ss_dssp CCHHHHHHHHHHHHHHSCSS--SC---------HHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHTSCCCG
T ss_pred CchHHHHHHHHHHHhcCCCc--cc---------ccccHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHhHHHH
Confidence 99999999999999999997 33 267899999999999999999997 995 99999999999987532
Q ss_pred ----CCHHHHHHhhhhcchhh
Q psy1087 390 ----LSEEAMARTRILEQNEA 406 (454)
Q Consensus 390 ----~~e~~ly~~Sl~~~~e~ 406 (454)
.+||++|++|+. .||
T Consensus 252 ~~~~~~ed~~y~lSl~--iEP 270 (271)
T 3qxl_A 252 ELQKFVEDDNYKLSLR--IEP 270 (271)
T ss_dssp GGHHHHHHHHHHHHHH--HCC
T ss_pred hhcCCCHHHHHHHHHh--cCC
Confidence 368999999994 554
No 7
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=124.77 Aligned_cols=106 Identities=26% Similarity=0.345 Sum_probs=82.5
Q ss_pred cccCCCHHHHHHHHhHHHHHHhcCCChHHHH--Hhhhhc-CC-CCCch--------HHH-------HHHHhhCCC-CHhh
Q psy1087 176 TLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQ-NE-EKSPN--------LTR-------ARTRILEQN-EARD 235 (454)
Q Consensus 176 ~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~-~~-~~~pn--------i~~-------v~~~Il~~~-~~~~ 235 (454)
-+++.+|.++|+|||.+|+++|+.....+-. .+.... .. ..-|+ |.+ |+.+||.|. +..+
T Consensus 44 lL~~~~~~~lA~hlt~~D~~l~~~l~vt~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~~va~~IL~c~g~~~~ 123 (331)
T 3t6g_A 44 LLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGSTGSAEE 123 (331)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTCCSCHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCcceeEEecccchhhHHHHHHhcchHHHHHHHHhcCCCCHHH
Confidence 4678999999999999999999876543322 111000 00 00011 122 899999996 8999
Q ss_pred HHHHHHHHHHHHHHHh-hcCChhhHHHHHhhcCcCcccccc--cccccH
Q psy1087 236 REKYVVKFIKIMKHLR-KMNNFNSYLGLLSALDSAPIRRLE--WQKHIT 281 (454)
Q Consensus 236 Ra~~i~kfI~vA~~~~-~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~ 281 (454)
|+.++.+||+||.+|. .++|+++++||+.||+++.|+||+ |+.+..
T Consensus 124 Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~ 172 (331)
T 3t6g_A 124 RAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQ 172 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhh
Confidence 9999999999999999 999999999999999999999998 997654
No 8
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.27 E-value=3.2e-12 Score=124.22 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=81.5
Q ss_pred cccCCCHHHHHHHHhHHHHHHhcCCChHHHH--Hhhhh----------cCCCCCchHHH-------HHHHhhCCCC-Hhh
Q psy1087 176 TLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQ----------QNEEKSPNLTR-------ARTRILEQNE-ARD 235 (454)
Q Consensus 176 ~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~----------~~~~~~pni~~-------v~~~Il~~~~-~~~ 235 (454)
-+++.+|.++|+|||.+|+++++.....+-. .+... +..-+..=|.+ |+.+||.|.. .++
T Consensus 43 lL~~~~~~~lA~hlt~~D~~lar~l~~t~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~wva~~IL~C~~~~~e 122 (333)
T 3t6a_A 43 LFTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGCTGTLED 122 (333)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTTSSCCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHhcCCcHHHHhhhcCCCcceEEEeeccchhhhHHHHHhcccHHHHHHHHHhCCCchHH
Confidence 4677999999999999999998776543322 11100 00000011122 8899999865 889
Q ss_pred HHHHHHHHHHHHHHHh-hcCChhhHHHHHhhcCcCcccccc--cccccH
Q psy1087 236 REKYVVKFIKIMKHLR-KMNNFNSYLGLLSALDSAPIRRLE--WQKHIT 281 (454)
Q Consensus 236 Ra~~i~kfI~vA~~~~-~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~ 281 (454)
|+.++.+||+||.+|. .+||+++++||+.||+++.|+||+ |+.+..
T Consensus 123 R~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~ 171 (333)
T 3t6a_A 123 RAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRH 171 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhH
Confidence 9999999999999999 999999999999999999999998 998754
No 9
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=97.66 E-value=2.8e-05 Score=73.85 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=41.8
Q ss_pred cchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 402 EQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 402 ~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
.+..+++|-+.+.||+++.+|++.+|||||..||+|||.++||+.
T Consensus 66 ~~~~~~~Ra~~i~~fI~iA~~~~~l~Nfns~~aI~~gL~~~~I~R 110 (240)
T 2ije_S 66 RNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFR 110 (240)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHhccchhhh
Confidence 456778899999999999999999999999999999999999985
No 10
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=97.66 E-value=2.7e-05 Score=75.26 Aligned_cols=46 Identities=30% Similarity=0.533 Sum_probs=42.5
Q ss_pred hcchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 401 LEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 401 ~~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
+.+..+++|-+.+.||+++.+|+|.+|||||..||+|||.++||+.
T Consensus 92 L~~~~~~~Ra~~i~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~R 137 (271)
T 3qxl_A 92 LTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFR 137 (271)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHcccchHHH
Confidence 3456778999999999999999999999999999999999999985
No 11
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=97.23 E-value=0.00017 Score=75.40 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=42.6
Q ss_pred hcchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 401 LEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 401 ~~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
+....+++|-+.+.||+++.+|+|.+|||||..||+|||.++||+.
T Consensus 281 l~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~R 326 (490)
T 2ii0_A 281 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 326 (490)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccchhhh
Confidence 3456788999999999999999999999999999999999999985
No 12
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=97.11 E-value=0.00026 Score=80.28 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=43.4
Q ss_pred hcchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 401 LEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 401 ~~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
+.+..++.|-+.+.|||+|++|+|.+|||||..||+|||.++||+.
T Consensus 820 l~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~R 865 (999)
T 4f7z_A 820 CLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSR 865 (999)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhhh
Confidence 4577899999999999999999999999999999999999999984
No 13
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=97.00 E-value=0.00039 Score=75.81 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=42.6
Q ss_pred hcchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 401 LEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 401 ~~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
+.+..+++|-+.+.||+++.+|++.+|||||..||+|||.++||+.
T Consensus 515 l~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~R 560 (694)
T 3cf6_E 515 CLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSR 560 (694)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCcchhh
Confidence 3456789999999999999999999999999999999999999974
No 14
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=96.71 E-value=0.00085 Score=76.48 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=43.0
Q ss_pred hcchhhhhhHHHHHHHHHHHHhHHhhhhhhhHHHHHHhhhcchhhH
Q psy1087 401 LEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446 (454)
Q Consensus 401 ~~~~e~~~rek~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
+....+++|-+.+.|||++.+|+|.+|||||..||+|||.++||+.
T Consensus 840 l~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~R 885 (1049)
T 3ksy_A 840 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 885 (1049)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcccchhHh
Confidence 4567889999999999999999999999999999999999999985
No 15
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=83.19 E-value=0.93 Score=44.14 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHHHHHhHH-hhhhhhhHHHHHHhhhcchhh
Q psy1087 405 EARDREKYVVKFIKIMKHLR-KMNNFNSYLGLLSALKTCFIY 445 (454)
Q Consensus 405 e~~~rek~~~k~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~ 445 (454)
...+|-..+.|||+|=.+++ ..+|+|++.|+++||+.+.|.
T Consensus 119 ~~~eR~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVS 160 (333)
T 3t6a_A 119 TLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQIT 160 (333)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHH
Confidence 34468888999999999999 899999999999999998764
No 16
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=78.63 E-value=1.6 Score=42.42 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHHHhHH-hhhhhhhHHHHHHhhhcchh
Q psy1087 405 EARDREKYVVKFIKIMKHLR-KMNNFNSYLGLLSALKTCFI 444 (454)
Q Consensus 405 e~~~rek~~~k~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~ 444 (454)
...+|-..+.|||+|=.+++ ..+|+|++.||+.||+.+-|
T Consensus 120 ~~~~Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqV 160 (331)
T 3t6g_A 120 SAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQI 160 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHH
Confidence 44568888999999999999 99999999999999999865
No 17
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.35 E-value=76 Score=24.01 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhhcCc----------CcccccccccccHHHHHHHH
Q psy1087 240 VVKFIKIMKHLRKMNNFNSYLGLLSALDS----------APIRRLEWQKHITEGLKEYC 288 (454)
Q Consensus 240 i~kfI~vA~~~~~l~NFns~~aI~sgL~~----------~~I~RLkw~~~~~~~l~~l~ 288 (454)
|..-++.|.+|--+|||.+....+.|.-. .+..|=||..+..+.-++++
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~ 70 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAK 70 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHH
Confidence 66778999999999999999998887632 22333347765554444443
Done!