RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1087
(454 letters)
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 204 bits (520), Expect = 3e-63
Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 28/232 (12%)
Query: 182 SEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-----------ARTRIL 228
+ IAEQ+TLLD +F I E W++ + E++P + + + I+
Sbjct: 6 ALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEII 65
Query: 229 EQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQ---KHITEG 283
+ R + K++ + R ++N+N+ L + S+++ + I RL+ W K
Sbjct: 66 RNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSL 125
Query: 284 LKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQ 343
L + L+ S F+ R++L PPC+PY+G+ L DL F+ G P+
Sbjct: 126 LDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTE--------- 176
Query: 344 YKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAM 395
++NFSK R +I++ +++F+ +K ++I++ + L EE++
Sbjct: 177 -DGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESL 227
Score = 57.3 bits (139), Expect = 2e-09
Identities = 12/69 (17%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 377 DRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLL 436
+ + F++ +F++ E I+ + R + K++ + R ++N+N+ L +
Sbjct: 47 MKTTKHFNHVSNFIASE------IIRNEDISARASAIEKWVAVADICRCLHNYNAVLEIT 100
Query: 437 SALKTCFIY 445
S++ I+
Sbjct: 101 SSINRSAIF 109
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 209 bits (533), Expect = 2e-62
Identities = 88/403 (21%), Positives = 165/403 (40%), Gaps = 61/403 (15%)
Query: 42 KECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYH----------------K 85
+ + ++ + FLTT+R+F P E++ +I+R+
Sbjct: 48 IKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENG 107
Query: 86 FVSSSEVQKQRAARETFSFLVQVVSELTVY--------ELDDNLVKYLTDFIYQLLSSGH 137
S K+ ++V++ + E D L++ + +FI +
Sbjct: 108 DQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAM 167
Query: 138 FKPARGLRVKLLAKYDCKNNESVKN----------EILSSLNVYTTHYTLLAFKSEHIAE 187
K + + K ++N N E S + + LL IA
Sbjct: 168 KKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIAR 227
Query: 188 QMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-----------ARTRILEQNEAR 234
Q+TLL+SDL+ ++ E++ W ++ E SPNL + I+E
Sbjct: 228 QLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLE 287
Query: 235 DREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW-----QKHITEGLKEYCA 289
+R V + I+I++ +++NNFN L ++SA++S+P+ RL+ + L+E
Sbjct: 288 ERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHE 347
Query: 290 LIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVIN 349
L S ++ Y L PPC+P+ G+ L ++ GNP +L + K +IN
Sbjct: 348 L--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHG-------KELIN 398
Query: 350 FSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSE 392
FSKRR+ I ++++++ + I FF N + +
Sbjct: 399 FSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNS 441
Score = 56.6 bits (136), Expect = 8e-09
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 374 PRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYL 433
P ++I +N + + I+E +R V + I+I++ +++NNFN L
Sbjct: 260 PNLLKMIRHTTNLTLWFEKC------IVETENLEERVAVVSRIIEILQVFQELNNFNGVL 313
Query: 434 GLLSALKTCFIY 445
++SA+ + +Y
Sbjct: 314 EVVSAMNSSPVY 325
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 215 bits (548), Expect = 1e-61
Identities = 91/424 (21%), Positives = 172/424 (40%), Gaps = 61/424 (14%)
Query: 21 IKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLI 80
I F ++ + + + ++ + FLTT+R+F P E++ +I
Sbjct: 586 IIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLII 645
Query: 81 DRYHKF--------------VSSSEVQKQRAARETFSFLVQ--VVSELTVY--------E 116
+R+ + + R+ + VQ V++ + E
Sbjct: 646 ERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFE 705
Query: 117 LDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKN----------EILS 166
D L++ + +FI + K + + K ++N N E
Sbjct: 706 RDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHI 765
Query: 167 SLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-- 222
S + + LL IA Q+TLL+SDL+ ++ E++ W ++ E SPNL +
Sbjct: 766 SRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMI 825
Query: 223 ---------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRR 273
I+E +R V + I+I++ +++NNFN L ++SA++S+P+ R
Sbjct: 826 RHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 885
Query: 274 LEW-----QKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIG 328
L+ + L+E L S ++ Y L PPC+P+ G+ L ++ G
Sbjct: 886 LDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEG 943
Query: 329 NPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDD 388
NP +L + K +INFSKRR+ I ++++++ + I FF N +
Sbjct: 944 NPEVLKRHG-------KELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNP 996
Query: 389 FLSE 392
+
Sbjct: 997 MGNS 1000
Score = 55.2 bits (132), Expect = 3e-08
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 378 RIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLS 437
++I +N + + I+E +R V + I+I++ +++NNFN L ++S
Sbjct: 823 KMIRHTTNLTLWFEKC------IVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVS 876
Query: 438 ALKTCFIY 445
A+ + +Y
Sbjct: 877 AMNSSPVY 884
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 191 bits (487), Expect = 5e-58
Identities = 50/252 (19%), Positives = 99/252 (39%), Gaps = 32/252 (12%)
Query: 165 LSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR 222
+S + + +L E A Q+TL+D +F I+ E+ W +++ +PN+
Sbjct: 16 YASKSYDAVVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVA 75
Query: 223 -----------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPI 271
IL + R + + F+KI K L ++NN +S + ++SAL SAPI
Sbjct: 76 FTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPI 135
Query: 272 RRLE--WQ---KHITEGLKEYCALIDSTSSFRAYRQALAETQ-PPCIPYIGLVLQDLTFV 325
RL W + ++ L+ +++ R+ + + P IPY+G+ L DL ++
Sbjct: 136 FRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYI 195
Query: 326 HIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGV--HKFPRHDRIIEFF 383
P + N + Q NI++ + + + ++
Sbjct: 196 DSAYPASG-----------SIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYL 244
Query: 384 SNFDDFLSEEAM 395
+ +
Sbjct: 245 KSVRYIEELQKF 256
Score = 57.8 bits (140), Expect = 1e-09
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 378 RIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLS 437
F+ ++ E IL + R + + F+KI K L ++NN +S + ++S
Sbjct: 75 AFTRRFNQVSFWVVRE------ILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVS 128
Query: 438 ALKTCFIY 445
AL++ I+
Sbjct: 129 ALQSAPIF 136
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 191 bits (485), Expect = 3e-53
Identities = 74/414 (17%), Positives = 151/414 (36%), Gaps = 48/414 (11%)
Query: 19 NLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKK 78
+ F +++++ ++D KE + ++E+ K+ A + +
Sbjct: 585 VAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDE 644
Query: 79 LIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLL----S 134
+ S EV + + ++V +V E+ + L ++ S
Sbjct: 645 RAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNS 704
Query: 135 SGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNV---------YTTHYTLLAFKSEHI 185
G + V + T T S+ +
Sbjct: 705 GGEKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDL 764
Query: 186 AEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-----------ARTRILEQNE 232
A QMT D +LF + E++ + ++ + NL T + ++
Sbjct: 765 AYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQ 824
Query: 233 ARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQK---HITEGLKEY 287
R + + KFIKI H ++ N NS+ ++ L + + RL W+K + E+
Sbjct: 825 LSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEF 884
Query: 288 CALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNV 347
+L+D + + RAYR A+ +PP IP++ L+++D+TF H GN + N+
Sbjct: 885 ESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFI-----------DNL 933
Query: 348 INFSKRRQQFNIVQNMKRFRS------GVHKFPRHDRIIEFFSNFDDFLSEEAM 395
+NF K R N + ++ +RS H + + + ++ +
Sbjct: 934 VNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRTL 987
Score = 64.5 bits (156), Expect = 3e-11
Identities = 47/402 (11%), Positives = 111/402 (27%), Gaps = 50/402 (12%)
Query: 49 EQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA-----RETFS 103
++ + F+ F ++ L+ YH S Q++ R
Sbjct: 508 PSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIR 567
Query: 104 FLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNE 163
++Q + +D++ + Y +S A K E + +
Sbjct: 568 LVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMA-------AFKEQLPELEKIVKQ 620
Query: 164 ILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRA 223
I + +L + E+ + +V + P
Sbjct: 621 ISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASV 680
Query: 224 RTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEG 283
+ I + K+ + + + ++S + + +
Sbjct: 681 KEVISAVAD-------------------KLGSGEGLI--IVKMNSGGEKVV-----LKSN 714
Query: 284 LKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQ 343
+ A + ++ P G T +G L+ +L +
Sbjct: 715 DVSVFTTLTINGRLFACPREQFDSLTPLPEQEGP-----TTGTVGTFELMSSKDLAYQMT 769
Query: 344 YKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQ 403
+ F+ + I R + D + F+ ++ E +
Sbjct: 770 TYDWELFNCVHELELIYHTFGR-HNFKKTTANLDLFLRRFNEIQFWVVTE------VCLC 822
Query: 404 NEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIY 445
++ R + + KFIKI H ++ N NS+ ++ L +
Sbjct: 823 SQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVS 864
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 185 bits (471), Expect = 4e-52
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 35/244 (14%)
Query: 176 TLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR----------- 222
T S+ +A QMT D +LF + E++ + ++ + NL
Sbjct: 450 TFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFW 509
Query: 223 ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQK-- 278
T + ++ R + + KFIKI H ++ N NS+ ++ L + + RL W+K
Sbjct: 510 VVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLP 569
Query: 279 -HITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNE 337
+ E+ +L+D + + RAYR A+ +PP IP++ L+++D+TF H GN +
Sbjct: 570 SKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFID--- 626
Query: 338 LPPHVQYKNVINFSKRRQQFNIVQNMKRFRS------GVHKFPRHDRIIEFFSNFDDFLS 391
N++NF K R N + ++ +RS H + + + +
Sbjct: 627 --------NLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDN 678
Query: 392 EEAM 395
+ +
Sbjct: 679 QRTL 682
Score = 60.2 bits (145), Expect = 6e-10
Identities = 42/403 (10%), Positives = 106/403 (26%), Gaps = 52/403 (12%)
Query: 49 EQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQ-----KQRAARETFS 103
++ + F+ F ++ L+ YH S Q R
Sbjct: 203 PSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIR 262
Query: 104 FLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNE 163
++Q + +D++ + Y +S A K E + +
Sbjct: 263 LVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMA-------AFKEQLPELEKIVKQ 315
Query: 164 ILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRA 223
I + +L + E+ + +V + P
Sbjct: 316 ISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASV 375
Query: 224 RTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEG 283
+ I + K+ + + + ++S + + +
Sbjct: 376 KEVISAVAD-------------------KLGSGEGLI--IVKMNSGGEKVV-----LKSN 409
Query: 284 LKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQ 343
+ A + ++ P G + + + +L +
Sbjct: 410 DVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSK-----DLAYQMT 464
Query: 344 YKNVINFSK-RRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILE 402
+ F+ + + + D + F+ ++ E +
Sbjct: 465 TYDWELFNCVHELELIYHTFGRH--NFKKTTANLDLFLRRFNEIQFWVVTE------VCL 516
Query: 403 QNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIY 445
++ R + + KFIKI H ++ N NS+ ++ L +
Sbjct: 517 CSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVS 559
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 79.4 bits (195), Expect = 2e-16
Identities = 40/307 (13%), Positives = 89/307 (28%), Gaps = 39/307 (12%)
Query: 146 VKLLAKYDCKNNESV----KNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIE 201
++ ++ + ES +N+ L + + + IA+ + +D + +
Sbjct: 9 LETVSSFRPNEFESKFLPPENKPLETALLKRAKELFTNNDPKVIAQHVLSMDCRVARILG 68
Query: 202 IPE-------VLAWIEQQNEEKSPNLTR-------------ARTRILEQNEARDREKYVV 241
+ E V + +E L A + DR +
Sbjct: 69 VSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGCTGTLEDRAATLS 128
Query: 242 KFIKIMKHLR-KMNNFNSYLGLLSALDSAPIRRLE--W---QKHITEGLKEYCALIDSTS 295
K I++ L+ M + S+ L+ AL+ I RLE W + T+ Y + S
Sbjct: 129 KIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQTAILYEKQLKPFS 188
Query: 296 SF--RAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKR 353
+P + L + ++ I +
Sbjct: 189 KLLHEGRESTCVPPNNVSVPLLM----PLVTLMERQAVTFEGTDMWEKNDQSCEIMLNHL 244
Query: 354 RQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYV 413
+ + +R + + E ++ E R + ++ +
Sbjct: 245 ATARFMAEAADSYRMNAERILAGFQPDE---EMNEICKTEFQMRLLWGSKGAQVNQTERY 301
Query: 414 VKFIKIM 420
KF +I+
Sbjct: 302 EKFNQIL 308
Score = 31.3 bits (70), Expect = 0.58
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 348 INFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEAR 407
+ S+ ++ V + + H IIE + ++ + + T LE
Sbjct: 67 LGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGCTGTLED---- 122
Query: 408 DREKYVVKFIKIMKHLR-KMNNFNSYLGLLSAL 439
R + K I++ L+ M + S+ L+ AL
Sbjct: 123 -RAATLSKIIQVAVELKDSMGDLYSFSALMKAL 154
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 74.4 bits (182), Expect = 7e-15
Identities = 43/277 (15%), Positives = 83/277 (29%), Gaps = 41/277 (14%)
Query: 177 LLAFKSEHIAEQMTLLDSDLFIKIEIPEVL-------AWIEQQNEEKSPNLTR------- 222
L + +A +T +D + + + + + +E L
Sbjct: 45 LAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFH 104
Query: 223 ------ARTRILEQNEARDREKYVVKFIKIMKHLR-KMNNFNSYLGLLSALDSAPIRRLE 275
A + A +R + K I++ LR M N S+ ++ ALD A I RLE
Sbjct: 105 TMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLE 164
Query: 276 W------QKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIG---LVLQDLTFVH 326
Q+H TEG Y + + P++ +L+ +
Sbjct: 165 QTWVTLRQRH-TEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLESDSAPP 223
Query: 327 IGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNF 386
G H + + R + + + + + +
Sbjct: 224 EGPEPW----GSTEHGVEVVLAHLEAART---VAHHGGLYHTNAEVKLQGFQARPELL-- 274
Query: 387 DDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHL 423
+ S E R Q + + + KF K++ L
Sbjct: 275 -EVFSTEFQMRLLWGSQGASSSQARRYEKFDKVLTAL 310
Score = 32.0 bits (72), Expect = 0.34
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 396 ARTRILEQNEARDREKYVVKFIKIMKHLR-KMNNFNSYLGLLSAL 439
A + A +R + K I++ LR M N S+ ++ AL
Sbjct: 111 AVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGAL 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 7e-09
Identities = 46/287 (16%), Positives = 94/287 (32%), Gaps = 53/287 (18%)
Query: 26 DYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHK 85
D + + N D++ + + + +E A+ + ++ + F I L+
Sbjct: 345 DNWKHVNCDKLTTII-ESSLNVLEPAE-YRKMFDRLSV-----FPPSAHIPTILLSLIWF 397
Query: 86 FVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIY--QLLSSGHFKPARG 143
V S+V VV++L Y L + K T I L +
Sbjct: 398 DVIKSDVM-------------VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 144 LRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIP 203
L ++ Y+ + I L+ Y + + H+ LF + +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGH---HLKNIEHPERMTLFRMVFLD 499
Query: 204 EVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLL 263
++EQ+ S A IL N + + Y ++ N Y L+
Sbjct: 500 --FRFLEQKIRHDSTAWN-ASGSIL--NTLQQLKFY-------KPYICD--NDPKYERLV 545
Query: 264 SALDSAPIRRLEWQKHITEGLKEYC-----ALIDSTSSF--RAYRQA 303
+A+ + ++E + +Y AL+ + A++Q
Sbjct: 546 NAILDF-LPKIEENLICS----KYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 55.6 bits (133), Expect = 2e-08
Identities = 72/490 (14%), Positives = 146/490 (29%), Gaps = 152/490 (31%)
Query: 42 KEC-VAQVEQADK-EKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAAR 99
K V + K + + F + +P +++ L ++ + + ++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 100 ETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRV-------KLLAKY 152
+L ++ + L + L Y+ L V K +
Sbjct: 223 I----------KLRIHSIQAELRRLLKSKPYE----------NCLLVLLNVQNAKAWNAF 262
Query: 153 D--CK-----NNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDS-DLFIKI---- 200
+ CK + V + + ++ TTH +L +H + +T + L +K
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAA---TTTHISL-----DHHSMTLTPDEVKSLLLKYLDCR 314
Query: 201 --EIPE--------VLAWI--------------EQQNEEK------------SPNLTRAR 224
++P L+ I + N +K P R
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 225 --------------TRILE----QNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLS-A 265
T +L D V K K L + S + + S
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTISIPSIY 432
Query: 266 LDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCI-PYIGLVLQDLTF 324
L+ E+ H + ++D + + + + PP + Y +
Sbjct: 433 LELKVKLENEYALHRS--------IVDHYNIPKTFDS--DDLIPPYLDQYF--------Y 474
Query: 325 VHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRI-IEFF 383
HIG+ HL + + F F ++ K RHD
Sbjct: 475 SHIGH-HLKNIE------HPERMTLFRMVFLDFRFLEQ---------KI-RHDSTAWNAS 517
Query: 384 SNFDDFLSEEAMARTRILEQNEARDR-EKYVVKFI-KIMKHLRKMNNFNSYLGLL-SAL- 439
+ + L + + I + + +R ++ F+ KI ++L + Y LL AL
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC----SKYTDLLRIALM 573
Query: 440 -KTCFIYQTA 448
+ I++ A
Sbjct: 574 AEDEAIFEEA 583
Score = 45.6 bits (107), Expect = 3e-05
Identities = 65/438 (14%), Positives = 124/438 (28%), Gaps = 129/438 (29%)
Query: 83 YHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFK--- 139
+H + + Q ++ ++ V + V D K + D +LS
Sbjct: 3 HHHHMDFETGEHQYQYKD----ILSVFEDAFVDNFD---CKDVQDMPKSILSKEEIDHII 55
Query: 140 --PARGLRVKLLAKYDC---KNNESVKNEILSSLNVYTTHYTLL--AFKSEHIA------ 186
L + K E V+ + L +Y L K+E
Sbjct: 56 MSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQPSMMTR 110
Query: 187 ---EQMTLL--DSDLFIKIEIPEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVV 241
EQ L D+ +F K + + L +A L E R K V+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSR---------LQPYLKLRQA----LL--ELRP-AKNVL 154
Query: 242 KFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE----W----QKHITEGL--------- 284
I + K +++ L L +++ W + E +
Sbjct: 155 --IDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 285 ---KEYCALIDSTSSFR--------AYRQALAETQ-PPCIPYIGLVLQDLTFVHIGNPHL 332
+ + D +S+ + R+ L C+ LVL ++ N
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKAWNAFN 263
Query: 333 LPCNELPPHV--QYKNVINF--SKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNF-- 386
L C L + ++K V +F + ++ + D + +
Sbjct: 264 LSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTL--------TPDEVKSLLLKYLD 312
Query: 387 ---DDFLSEEA-----MARTRI---LEQNEAR-DREKYVV--KFIKIMKHLRKMNNFNSY 432
D L E + I + A D K+V K I++ +N
Sbjct: 313 CRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLEPA 369
Query: 433 LGLLSALKTCFIYQTAIL 450
+ F + ++
Sbjct: 370 E-----YRKMF-DRLSVF 381
Score = 34.4 bits (78), Expect = 0.078
Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 35/151 (23%)
Query: 2 LH-SIV-HSTLNQVFQSVANLIKFCDDYFL----YNNNDEVNEELAKECVAQVEQADKE- 54
LH SIV H + + F S + + D YF ++ + +E ++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------------LKNIEHPERMT 491
Query: 55 --KHLYQD-AFL-TTFRTFKTPLEIIKKLID------RYHKFVSSSEVQKQRAARETFSF 104
+ ++ D FL R T +++ Y ++ ++ + +R F
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 105 LVQVVSELTVYELDDNLVK----YLTDFIYQ 131
L ++ L + D L++ + I++
Sbjct: 552 LPKIEENLICSKYTD-LLRIALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 78/464 (16%), Positives = 149/464 (32%), Gaps = 143/464 (30%)
Query: 2 LHSIVHSTLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQA--DKEKHLY- 58
+H++ L + ++ + +Y K+ + + +A + L
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 59 ----Q---DAFLTTFRT-FKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVS 110
Q D + R ++T ++ LI + ET S L++
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF---------------SAETLSELIRTTL 203
Query: 111 ELT-VYELDDNLVKYLT------DFIYQLLS---SGHFKPARGLRVKLLAKY--DCKNNE 158
+ V+ N++++L D Y LLS S P G+ ++ LA Y K
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDY-LLSIPISC---PLIGV-IQ-LAHYVVTAKLLG 257
Query: 159 SVKNEILSSLNVYTTHYT-LLAFKSEHIAEQMTLLDSDLFIKI--EIPEVLAWI--EQQN 213
E+ S L T H L+ + IAE + +S F + VL +I
Sbjct: 258 FTPGELRSYLKGATGHSQGLVT--AVAIAETDS-WES--FFVSVRKAITVLFFIGVRCY- 311
Query: 214 EEKSPNLTRARTRILEQNEARDREKY-----VVKFI---KIMKHLRKMNNFNSYLGLLSA 265
E PN + ILE + + E + + ++ ++ K N
Sbjct: 312 -EAYPNTS-LPPSILEDSLENN-EGVPSPMLSISNLTQEQVQDYVNKTN----------- 357
Query: 266 LDSAPIRRLEWQKHITEGLKEYCALIDSTSSF---------RAYRQALAETQPPC----- 311
L K + +L++ + L + + P
Sbjct: 358 ------SHLPAGKQV------EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 312 -IPY----IGLVLQDLTFVHIGNP-H---LLPCNELPPHVQYKNVINFSK---------- 352
IP+ + + F+ + +P H L+P ++L KN ++F+
Sbjct: 406 RIPFSERKLKFSNR---FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 353 ------RRQQFNIVQNMKR--FRSGVH-----KF-PRHDRIIEF 382
R +I + + R V +F H I++F
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH--ILDF 504
Score = 41.2 bits (96), Expect = 7e-04
Identities = 51/352 (14%), Positives = 98/352 (27%), Gaps = 142/352 (40%)
Query: 4 SIVHSTLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFL 63
++ H +L V V +F+ +L ++ + + + D
Sbjct: 10 TLSHGSLEHVL-LVPT-----ASFFIA-------SQLQEQFNKILPEPTEG--FAADD-- 52
Query: 64 TTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVK 123
TP E L+ ++ +VSS V+ + + F ++ +
Sbjct: 53 ----EPTTPAE----LVGKFLGYVSS-LVEPSKVGQ--FDQVLNLC-------------- 87
Query: 124 YLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSE 183
LT+F L N+I H L A
Sbjct: 88 -LTEFENCYLEG--------------------------NDI---------H-ALAA--KL 108
Query: 184 HIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRARTRILE---QNEAR------ 234
TL+ + IK +I + K P ++ + + + A+
Sbjct: 109 LQENDTTLVKTKELIK-------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 235 ---DREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALI 291
+ + Y + LR + + +Y L+ L I+ E L E
Sbjct: 162 GQGNTDDYF-------EELRDL--YQTYHVLVGDL----IKF------SAETLSELIR-- 200
Query: 292 DSTSSFRAYRQAL--------AETQPPC---------IPYIGLVLQDLTFVH 326
+ + + + Q L P P IG++ Q H
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI-Q---LAH 248
Score = 34.6 bits (79), Expect = 0.083
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 387 DDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
+ F +E + V KF+ + L + + + +L+ T F +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--E 92
Query: 447 TAILLNK 453
L
Sbjct: 93 NCYLEGN 99
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.18
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 13/34 (38%)
Query: 237 EKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAP 270
EK +K K+ L+ Y A DSAP
Sbjct: 18 EKQALK--KLQASLKL------Y-----ADDSAP 38
Score = 28.8 bits (63), Expect = 2.1
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 15/35 (42%)
Query: 271 IRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALA 305
+++L+ LK Y DS ALA
Sbjct: 22 LKKLQ------ASLKLYAD--DSAP-------ALA 41
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 30.4 bits (68), Expect = 1.00
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 216 KSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE 275
SP + + + + + + LR+ + LL+ D R++
Sbjct: 169 LSPRFGALVRDEIRNLFTQMGDLALEDAVVKLGELRR------GIRLLAPDDKDVKYRMD 222
Query: 276 WQKHITE--GLKEYCALIDSTSSFRAYRQALAE 306
W + T+ G++ C ID ++ E
Sbjct: 223 WARRCTDLFGIQH-CHNIDVKRLLDLFKVMFQE 254
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase,
protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Length = 695
Score = 30.2 bits (69), Expect = 1.4
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 30/88 (34%)
Query: 203 PEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGL 262
PEV W+ QN R L + R+ + +++ +S
Sbjct: 33 PEVQTWMTAQNA-----HARE---ALAKFPGRE---------ALAARFKELFYTDSV--- 72
Query: 263 LSALDSAPIRRLEW---QKHITEGLKEY 287
S P RR + T KE
Sbjct: 73 -----STPSRRNGRFFYVR--THKDKEK 93
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study,
celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Length = 741
Score = 30.2 bits (69), Expect = 1.6
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 203 PEVLAWIEQQNEEKSPNLTRARTRILEQNEARDR 236
+V AW++ Q+ T A L+Q R
Sbjct: 72 AKVAAWVQAQSA-----YTAAY---LKQLPERAA 97
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB:
3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A*
3mun_A*
Length = 693
Score = 29.8 bits (68), Expect = 2.0
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 30/88 (34%)
Query: 203 PEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGL 262
PE AW++ QN +T+ L Q R I + L N+
Sbjct: 42 PETEAWVKAQNA-----VTQD---YLAQIPYRA---------AIKEKLAASWNYAKE--- 81
Query: 263 LSALDSAPIRRLEW---QKHITEGLKEY 287
AP R + K +GL+
Sbjct: 82 -----GAPFREGRYHYFFK--NDGLQNQ 102
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding,
mitochondrion NADP, nucleotide-binding, transferase,
transit peptide; HET: NAI; 2.00A {Saccharomyces
cerevisiae}
Length = 388
Score = 29.4 bits (66), Expect = 2.4
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 2/102 (1%)
Query: 331 HLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFL 390
+ P N L V + + Q ++ + K P E F L
Sbjct: 9 KIKPVNNLRSSSSADFVSPPNSKLQSLIWQNPLQNV--YITKKPWTPSTREAMVEFITHL 66
Query: 391 SEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSY 432
E I++ + A + + ++ + +
Sbjct: 67 HESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPE 108
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia,
beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus
scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A*
3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A
1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A
3ddu_A*
Length = 710
Score = 29.5 bits (67), Expect = 2.7
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 13/47 (27%)
Query: 203 PEVLAWIEQQNEEKSPNLTRA-------RTRILEQNEAR-DREKYVV 241
+ A++E QN+ +T R E+ D KY
Sbjct: 37 EQTKAFVEAQNK-----ITVPFLEQCPIRGLYKERMTELYDYPKYSC 78
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 29.2 bits (65), Expect = 2.9
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 264 SALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAE 306
L + L +K +T L E+ + + S++ ++Q
Sbjct: 218 VKLHQHTKKPLLIRKQVT--LVEFADYVRTWSAYHQWKQDPKN 258
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 3.3
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 203 PEVLA-WIEQQN---EEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMN 254
PE + W E+Q +E E+ +D E++ + + ++ + N
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREK-AKKDLEEWNQRQSEQVEKNKINN 138
Score = 28.6 bits (63), Expect = 3.5
Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 204 EVLAWIEQQNEEKSPNLTRARTRILEQNEARDRE 237
++ W ++Q+E+ N + RI ++ + +
Sbjct: 119 DLEEWNQRQSEQVEKN--KINNRIADKAFYQQPD 150
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 27.8 bits (63), Expect = 6.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 104 FLVQVVSELTVYELDDNLVKYLTD 127
+L+ L + E+D +LV +L
Sbjct: 46 YLLTECDNLALVEIDRDLVAFLQK 69
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.1 bits (62), Expect = 7.5
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 32 NNDEVNEELAKECVAQVEQADKEKHLYQDAF 62
N +++ E ++++ +Y + F
Sbjct: 383 QNKAARLQISMCQKKAKEHNERDRRIYANMF 413
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 27.9 bits (62), Expect = 8.6
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 363 MKRFRSGVHKF---PRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREK 411
++ F P+ + EFF + +F + A ++ E ++ +
Sbjct: 343 ETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMR 394
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.392
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,758,827
Number of extensions: 403792
Number of successful extensions: 1002
Number of sequences better than 10.0: 1
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 53
Length of query: 454
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 357
Effective length of database: 3,993,456
Effective search space: 1425663792
Effective search space used: 1425663792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.4 bits)