RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1087
(454 letters)
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 186 bits (474), Expect = 2e-54
Identities = 89/421 (21%), Positives = 174/421 (41%), Gaps = 64/421 (15%)
Query: 58 YQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFL------------ 105
+ FLTT+R+F P E++ +I+R+ + A L
Sbjct: 58 FVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYI 117
Query: 106 ----VQVVSELTVY--------ELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYD 153
++V++ + E D L++ + +FI + K + + K
Sbjct: 118 QPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKI 177
Query: 154 CKNNESVKN----------EILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIP 203
++N N E S + + LL IA Q+TLL+SDL+ ++
Sbjct: 178 ARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPS 237
Query: 204 EVL--AWIEQQNEEKSPNLTR-----------ARTRILEQNEARDREKYVVKFIKIMKHL 250
E++ W ++ E SPNL + I+E +R V + I+I++
Sbjct: 238 ELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVF 297
Query: 251 RKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLKEYCALID-STSSFRAYRQALAET 307
+++NNFN L ++SA++S+P+ RL+ +++ + K + S ++ Y L
Sbjct: 298 QELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI 357
Query: 308 QPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFR 367
PPC+P+ G+ L ++ GNP +L + K +INFSKRR+ I +++++
Sbjct: 358 NPPCVPFFGIYLTNILKTEEGNPEVLKRHG-------KELINFSKRRKVAEITGEIQQYQ 410
Query: 368 SGVHKFPRHDRIIEFFSNF-------DDFLSEEAMARTRILEQNEARDREKYVVKFIKIM 420
+ + I FF N + ++ ++ +E + ++ K+ +
Sbjct: 411 NQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPL 470
Query: 421 K 421
K
Sbjct: 471 K 471
Score = 47.1 bits (111), Expect = 2e-06
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 389 FLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQ 446
+ I+E +R V + I+I++ +++NNFN L ++SA+ + +Y+
Sbjct: 263 TTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 320
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain
{Pig (Sus scrofa) [TaxId: 9823]}
Length = 430
Score = 28.4 bits (62), Expect = 1.9
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 203 PEVLAWIEQQNEEKSPNLTRARTRILEQNEAR---DREKYVVKFIK 245
+ A++E QN+ P L + R L + D KY F K
Sbjct: 37 EQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKK 82
>d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme,
C-terminal donain {Aeropyrum pernix [TaxId: 56636]}
Length = 260
Score = 27.5 bits (59), Expect = 3.1
Identities = 6/63 (9%), Positives = 13/63 (20%)
Query: 330 PHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDF 389
P L + K ++ H + ++ F
Sbjct: 194 PLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFF 253
Query: 390 LSE 392
L+
Sbjct: 254 LAT 256
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 26.9 bits (59), Expect = 5.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 339 PPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEF 382
V +KNV++ + R+ F I Q K FR+ + R+ EF
Sbjct: 192 GIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREF 235
>d2nw8a1 a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase
{Xanthomonas campestris pv. campestris [TaxId: 340]}
Length = 262
Score = 26.6 bits (58), Expect = 5.8
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 18/95 (18%)
Query: 193 DSDLFI----------KIEIPEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVK 242
D LFI K+ E+ A I ++ + R + + + +
Sbjct: 25 DEMLFIIQHQTSELWLKLLAHELRAAIVHLQRDEVWQCRKVLARS------KQVLRQLTE 78
Query: 243 FIKIMKHLRKM--NNFNSYLGLLSALDSAPIRRLE 275
+++ L F LG S S R +E
Sbjct: 79 QWSVLETLTPSEYMGFRDVLGPSSGFQSLQYRYIE 113
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 26.5 bits (57), Expect = 6.2
Identities = 20/194 (10%), Positives = 50/194 (25%), Gaps = 9/194 (4%)
Query: 232 EARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALI 291
A+ + + S+L L +L + + +
Sbjct: 52 TAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSD 111
Query: 292 DSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFS 351
+ + I F H + P V K + +
Sbjct: 112 RYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRA 171
Query: 352 KRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREK 411
+ ++ + +++ H + + + L EA+ +L + D +
Sbjct: 172 REEEKGIELAYLEQL---------HGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSE 222
Query: 412 YVVKFIKIMKHLRK 425
V K +M+ +
Sbjct: 223 EVTKQEDLMREVNT 236
>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 135
Score = 25.8 bits (57), Expect = 7.5
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 267 DSAPIRRLEWQKHITEGLK--EYCALIDSTSSFRAYRQALAETQPPCIPYIGLVL 319
D +R++ Q+ + + Y + +T A RQ + P +G+ L
Sbjct: 64 DQEALRKI-HQRSLERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMAL 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.392
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,654,638
Number of extensions: 79120
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 18
Length of query: 454
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,199,356
Effective search space: 438964296
Effective search space used: 438964296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.9 bits)