BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10872
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2
Length = 1992
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 153/264 (57%), Gaps = 55/264 (20%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEH-KDCSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL +E + PL AL+ K+N C+SQ+E
Sbjct: 1171 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIERVEPVGNAPLLALVHKMNNCLSQME 1230
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G G+ + ALKFFNT
Sbjct: 1231 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNT--------------------------- 1263
Query: 117 PLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDS 176
HQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R +D
Sbjct: 1264 --------HQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR-EDD 1314
Query: 177 GESDEDNSEEDIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGEN 235
+SD+D S+E+ID++LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS E
Sbjct: 1315 EDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDER 1374
Query: 236 GGQGHGGCETESESEAPLGSASVW 259
E+ + PLG A +W
Sbjct: 1375 --------ESTDDESNPLGRAGIW 1390
>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1
SV=1
Length = 1992
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 152/264 (57%), Gaps = 55/264 (20%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLE-SNVIVEHKDCSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL I + PL AL+ K+N C+SQ+E
Sbjct: 1171 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGNAPLLALVHKMNNCLSQME 1230
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G G+ + ALKFFNT
Sbjct: 1231 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNT--------------------------- 1263
Query: 117 PLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDS 176
HQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R+ D
Sbjct: 1264 --------HQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDE 1315
Query: 177 GESDEDNSEEDIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGEN 235
+SD+D S+E+ID++LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS E
Sbjct: 1316 -DSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDER 1374
Query: 236 GGQGHGGCETESESEAPLGSASVW 259
E+ + PLG A +W
Sbjct: 1375 --------ESTDDESNPLGRAGIW 1390
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1
SV=1
Length = 2025
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 147/253 (58%), Gaps = 55/253 (21%)
Query: 18 RQCRLRKFLHVFAKCPLESNVIVEH-KDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPA 76
R+ RL++FLHVF PL V + PL AL+ K+N C+SQ+EQ PVKVHD P+
Sbjct: 1215 REIRLKRFLHVFFSSPLPGEEPVGRVEPVGHAPLLALVHKMNNCLSQMEQFPVKVHDFPS 1274
Query: 77 GTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQL 127
G G+ + ALKFFNT HQL
Sbjct: 1275 GNGAGGSFSLNRGSQALKFFNT-----------------------------------HQL 1299
Query: 128 KCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEED 187
KC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R +D +SD+D S+E+
Sbjct: 1300 KCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR-EDDEDSDDDGSDEE 1358
Query: 188 IDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETE 246
ID++LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS E E+
Sbjct: 1359 IDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDER--------EST 1410
Query: 247 SESEAPLGSASVW 259
+ PLG A +W
Sbjct: 1411 DDESNPLGRAGIW 1423
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12
PE=2 SV=1
Length = 2056
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 147/248 (59%), Gaps = 50/248 (20%)
Query: 18 RQCRLRKFLHVFAKCPLESNVIVEHKDCSAEP-LAALIAKLNGCVSQLEQLPVKVHDLPA 76
R RL++FLHVF PL + D + L AL+ K+N C+SQ+EQ PVKVHD P+
Sbjct: 1249 RDIRLKRFLHVFFGTPLPGEEPLAKLDPTENRHLLALVHKMNNCLSQMEQFPVKVHDFPS 1308
Query: 77 GTGS----TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQ 132
G G+ + ALKFFNT HQLKC LQ
Sbjct: 1309 GNGTGSRGSQALKFFNT-----------------------------------HQLKCQLQ 1333
Query: 133 RHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEEDIDDTL 192
RHP CT++KQWKGG VKIDPLALVQAIERYLVVRGY R+R +D +SD+D S+E+ID++L
Sbjct: 1334 RHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR-EDDEDSDDDGSDEEIDESL 1392
Query: 193 AAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETESESEA 251
AA + G RH+LQF IGDH LPYNMTVYQA+RQ+S E E+ +
Sbjct: 1393 AAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQYSIQTEEER--------ESTDDESN 1444
Query: 252 PLGSASVW 259
PLG A +W
Sbjct: 1445 PLGRAGIW 1452
>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1
Length = 2026
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 146/258 (56%), Gaps = 48/258 (18%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAE-PLAALIAKLNGCVSQLE 65
++S++ + R R+++FLHVF CP+ D + PL AL+ K+N C+SQ+E
Sbjct: 1210 LTSNSERDTISRDERIKRFLHVFFGCPIPGQEPPGRLDPTENGPLLALVHKMNNCLSQME 1269
Query: 66 QLPVKVHDLPAGTGS----TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARM 121
Q PVKVHD P+G G+ + ALKFFNT
Sbjct: 1270 QFPVKVHDFPSGNGNGSRGSQALKFFNT-------------------------------- 1297
Query: 122 CNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDE 181
HQLKC LQRHP CT++KQWKGG VKIDPLALVQAIERYLVVRGY RIR++D D+
Sbjct: 1298 ---HQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDEDSDDD 1354
Query: 182 DNSEEDIDDTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHG 241
+ +E + A + + RH+LQF IG+H LPYNMTVYQA+RQFS E
Sbjct: 1355 GSDDEIDESLAAQFLNSGSVRHRLQFYIGEHLLPYNMTVYQAVRQFSLQAEEER------ 1408
Query: 242 GCETESESEAPLGSASVW 259
E+ + PLG A +W
Sbjct: 1409 --ESTDDEANPLGRAGIW 1424
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12
PE=2 SV=1
Length = 2025
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 152/264 (57%), Gaps = 55/264 (20%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEH-KDCSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL V + PL AL+ K+N C+SQ+E
Sbjct: 1204 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPVGRVEPVGHAPLLALVHKMNNCLSQME 1263
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G GS + ALKFFNT
Sbjct: 1264 QFPVKVHDFPSGNGSGGSFSLNRGSQALKFFNT--------------------------- 1296
Query: 117 PLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDS 176
HQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R +D
Sbjct: 1297 --------HQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR-EDD 1347
Query: 177 GESDEDNSEEDIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGEN 235
+SD+D S+E+ID++LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS E
Sbjct: 1348 EDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDER 1407
Query: 236 GGQGHGGCETESESEAPLGSASVW 259
E+ + PLG A +W
Sbjct: 1408 --------ESTDDESNPLGRAGIW 1423
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1
SV=3
Length = 2610
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 41 EHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHP 100
E++D + P ALI KL + +E+LP+ ++D P GST L+ T +L+ L+R P
Sbjct: 952 ENEDDESRPAVALIRKLIAVLESIERLPLHLYDTP---GSTYNLQIL-TRRLRFRLERAP 1007
Query: 101 SCTSLKQWKGGTVKIDPLARMCNTHQ 126
T+L G +K++PLA + + Q
Sbjct: 1008 GETALIDRTGRMLKMEPLATVESLEQ 1033
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1
SV=2
Length = 2618
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 26 LHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALK 85
++VF ES E + + P ALI KL + +E+LP+ ++D P GST L+
Sbjct: 946 INVFKTAFSES----EDDESYSRPAVALIRKLIAVLESIERLPLHLYDTP---GSTYNLQ 998
Query: 86 FFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQ 126
T +L+ L+R P TSL G +K++PLA + + Q
Sbjct: 999 IL-TRRLRFRLERAPGETSLIDRTGRMLKMEPLATVESLEQ 1038
>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3
PE=1 SV=1
Length = 1888
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 18 RQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKV-HDLPA 76
RQ LR+F K LE + + + P+ LI KL +S LE+ PV + H +
Sbjct: 852 RQEGLRRF-----KAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLERFPVVLSHPSRS 906
Query: 77 GTGS---TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQL 127
+GS ++ L H LK L R +L+ + V IDPLA + +
Sbjct: 907 LSGSARLSSGLSAL-AHPLKLRLCRASGEKTLRDYSSNIVLIDPLASLAAVEEF 959
>sp|B4M357|UBA5_DROVI Ubiquitin-like modifier-activating enzyme 5 OS=Drosophila virilis
GN=GJ19153 PE=3 SV=1
Length = 400
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 126 QLKCHLQRHPSCTS-----LKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDK 174
+LK L+ +CT +++ V +P + + A++R +V+ Y RIRDK
Sbjct: 14 ELKSELEEQKTCTRNARERIERMSAEVVDSNPYSRLMALQRMNIVKDYERIRDK 67
>sp|Q92JC5|Y142_RICCN Uncharacterized protein RC0142 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC0142 PE=3 SV=1
Length = 993
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 114 KIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRD 173
K+D ++ +L+ H + T +KQ + D V+ LV RG R+R+
Sbjct: 896 KVDSTSKGTGVIDYSFNLKEHDNPTGVKQIRENAEIRDKRVKVEKAWNELVARGGGRVRE 955
Query: 174 KDSGESDED--NSEEDIDDTLAAVVIT 198
++ GE E N+E+ D+ + + V+T
Sbjct: 956 QEGGEISERRANAEKAWDELVKSGVVT 982
>sp|B4QHB1|ASPG1_DROSI Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase GD10667
OS=Drosophila simulans GN=GD10667 PE=3 SV=1
Length = 393
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 187 DIDDTLAAVVITHGARHKLQFLIGDHPLP 215
D+++ + A T+GARHK+ +GD P+P
Sbjct: 250 DVENNIHAGTSTNGARHKIPGRVGDSPIP 278
>sp|B3N6Y7|ASPG1_DROER Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase GG24090
OS=Drosophila erecta GN=GG24090 PE=3 SV=1
Length = 396
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 187 DIDDTLAAVVITHGARHKLQFLIGDHPLP 215
D++ + A T+GARHK+ +GD P+P
Sbjct: 253 DVESNIHAGTSTNGARHKIPGRVGDSPIP 281
>sp|B4NWI1|ASPG1_DROYA Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase GE19290
OS=Drosophila yakuba GN=GE19290 PE=3 SV=1
Length = 396
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 187 DIDDTLAAVVITHGARHKLQFLIGDHPLP 215
D++ + A T+GARHK+ +GD P+P
Sbjct: 253 DVESNIHAGTSTNGARHKIPGRVGDSPIP 281
>sp|Q8MR45|ASPG1_DROME Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase CG1827
OS=Drosophila melanogaster GN=CG1827 PE=2 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 187 DIDDTLAAVVITHGARHKLQFLIGDHPLP 215
D++ + A T+GARHK+ +GD P+P
Sbjct: 250 DVESNIHAGTSTNGARHKIPGRVGDSPIP 278
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,746,336
Number of Sequences: 539616
Number of extensions: 4416363
Number of successful extensions: 13385
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13341
Number of HSP's gapped (non-prelim): 28
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)