Query psy10872
Match_columns 259
No_of_seqs 48 out of 50
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 20:35:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0168|consensus 99.9 1.9E-24 4E-29 219.0 6.6 153 6-196 891-1048(1051)
2 KOG0168|consensus 99.4 1.1E-13 2.4E-18 141.6 0.1 181 3-193 804-1041(1051)
3 PF11816 DUF3337: Domain of un 81.7 1.2 2.5E-05 41.4 2.7 27 201-228 289-315 (331)
4 PRK07440 hypothetical protein; 36.3 34 0.00073 25.3 2.4 27 203-229 3-31 (70)
5 PF13510 Fer2_4: 2Fe-2S iron-s 35.3 27 0.00059 26.3 1.8 26 204-229 3-30 (82)
6 PRK05659 sulfur carrier protei 34.6 35 0.00075 24.0 2.2 24 206-229 2-27 (66)
7 PF05491 RuvB_C: Holliday junc 32.7 18 0.00038 28.4 0.5 29 142-170 20-57 (76)
8 PF06426 SATase_N: Serine acet 31.8 4.2 9.1E-05 32.4 -3.2 56 81-139 34-89 (105)
9 PRK05863 sulfur carrier protei 29.1 39 0.00084 24.4 1.7 24 206-229 2-27 (65)
10 PHA03325 nuclear-egress-membra 28.3 48 0.001 33.2 2.7 41 54-103 76-116 (418)
11 PRK06944 sulfur carrier protei 27.5 55 0.0012 22.8 2.2 24 206-229 2-27 (65)
12 cd07451 CRD_SMO Cysteine-rich 27.2 21 0.00046 30.1 0.1 11 211-221 15-25 (132)
13 PRK08053 sulfur carrier protei 24.5 52 0.0011 23.6 1.7 24 206-229 2-27 (66)
14 cd00565 ThiS ThiaminS ubiquiti 22.8 58 0.0013 23.1 1.6 23 207-229 2-26 (65)
15 PF10531 SLBB: SLBB domain; I 20.8 43 0.00094 23.5 0.6 19 213-231 15-33 (59)
16 PTZ00305 NADH:ubiquinone oxido 20.8 88 0.0019 30.1 2.8 30 200-229 64-96 (297)
17 PF11044 TMEMspv1-c74-12: Plec 20.2 60 0.0013 24.0 1.2 13 217-229 22-34 (49)
No 1
>KOG0168|consensus
Probab=99.90 E-value=1.9e-24 Score=218.98 Aligned_cols=153 Identities=49% Similarity=0.724 Sum_probs=126.1
Q ss_pred cccccCCCCchHHHHHHHHHHHHHhCCCCCCccc--ccccCCCcchHHHHHHHHHhhhhhccccceeeecCCCCCCc---
Q psy10872 6 KISSSATDGSEERQCRLRKFLHVFAKCPLESNVI--VEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGS--- 80 (259)
Q Consensus 6 ~~ss~~~~~~~~r~~rlr~Fl~vF~~~p~~~~~~--~~~~~~~~~pl~~LV~KL~~~ls~lErFpV~~~d~~~~~g~--- 80 (259)
+|||- ......|..|+|+|||||+..|++.... +...+....|..+++.|.++||.|+|+||||+||.|.++||
T Consensus 891 ~lsSg-~t~~s~~~i~~~~fl~~f~~~ple~~~~~~~~v~~l~~~~~~a~~~~~~~cl~~m~~~~~k~~d~p~~~~~r~~ 969 (1051)
T KOG0168|consen 891 YLSSG-ETILSVPCIRLRTFLHVFLRLPLEPMLQPNVQVPPLTSSPAEADVEKENNCLDQMEQVPVKVHDFPAGTGGRGS 969 (1051)
T ss_pred hcccC-cchhhhHHHHHHHHHHHHhcCCchhhccccccCCCccccchhhhhhcccCCcchhhcCCCccccccCcCCcccc
Confidence 45554 3445689999999999999999976542 35667788999999999999999999999999999997543
Q ss_pred hhhhhhhhcccceeeeccCCCccccccccCCceeecchhhhhccccchhccccCCcccccccccCCeeeeccchhhhhhh
Q psy10872 81 TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIE 160 (259)
Q Consensus 81 ssgL~f~~thq~K~~L~R~p~~~~Lkdyssg~vlidpla~l~a~eqL~~rlqR~P~c~~~k~wk~G~~k~~pia~vqAIe 160 (259)
..+++||++|++||.++|||.|+ ++|+||||.++++|.+.+|+|+
T Consensus 970 ~~s~~~~n~~dlk~~~~~h~~~~-----------------------------------~~kq~kG~~~~iep~~~~~g~q 1014 (1051)
T KOG0168|consen 970 QFSTSFFNTHDLKCLLQRHPTCK-----------------------------------NCKQLKGGNVKIEPAAEVQGIQ 1014 (1051)
T ss_pred hhhhheeecccccCccccCcccc-----------------------------------chhhhcCCCcccChhhhchhhH
Confidence 55788888888877777777666 9999999999999999999999
Q ss_pred hHhhhhheeeeccCCCCCCCCCCCCccchhhhHHHH
Q psy10872 161 RYLVVRGYARIRDKDSGESDEDNSEEDIDDTLAAVV 196 (259)
Q Consensus 161 ~yl~vrgY~~~R~~~~~~~dd~~sDeD~dd~~~~~~ 196 (259)
||.++|+|+.+|.. -.+++|+ +|+|.|+..++.+
T Consensus 1015 ~~~~~~~~~~~~~D-t~~s~d~-s~~d~d~s~~ak~ 1048 (1051)
T KOG0168|consen 1015 RRSVVRKRGFARVD-TGSSDDD-SDEDFDHSCAAKF 1048 (1051)
T ss_pred HHHHHhhccccccc-cccCccc-chhhhhhhhhhhc
Confidence 99999999999984 3344444 8888888887544
No 2
>KOG0168|consensus
Probab=99.35 E-value=1.1e-13 Score=141.56 Aligned_cols=181 Identities=23% Similarity=0.233 Sum_probs=123.5
Q ss_pred ccccccccCCCCchHHHHHHHHHHHHHhCCCCCCc-------ccccccCCCcchHHHHHHHHHhhhhhccccceeeecCC
Q psy10872 3 LDDKISSSATDGSEERQCRLRKFLHVFAKCPLESN-------VIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLP 75 (259)
Q Consensus 3 ~~~~~ss~~~~~~~~r~~rlr~Fl~vF~~~p~~~~-------~~~~~~~~~~~pl~~LV~KL~~~ls~lErFpV~~~d~~ 75 (259)
+-+-|++.-..+.+.|..=-+-|+++|-.+.+..- .+..+...+..+++.+++||+++|+++|+||++++|++
T Consensus 804 ~~~sisnr~s~~~~sre~~~k~~~~~~e~e~~r~l~vl~~v~t~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~ 883 (1051)
T KOG0168|consen 804 VADSISNRESSGTWSREQAAKLVLRYFEQEILRFLNVLQEVLTRLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSG 883 (1051)
T ss_pred HHHHHHhhhhcchhhHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCch
Confidence 44566677777777775544444444443332210 01135566788899999999999999999999999988
Q ss_pred CC-CCc---hhhhhhhhcccceeeeccCCCcc--ccccccCCcee-----------------------------------
Q psy10872 76 AG-TGS---TTALKFFNTHQLKCHLQRHPSCT--SLKQWKGGTVK----------------------------------- 114 (259)
Q Consensus 76 ~~-~g~---ssgL~f~~thq~K~~L~R~p~~~--~Lkdyssg~vl----------------------------------- 114 (259)
.. .++ |||++ .+++|.+..+|+.-... .|.+|.-..|.
T Consensus 884 ~~kn~~~~lsSg~t-~~s~~~i~~~~fl~~f~~~ple~~~~~~~~v~~l~~~~~~a~~~~~~~cl~~m~~~~~k~~d~p~ 962 (1051)
T KOG0168|consen 884 SKKNILAYLSSGET-ILSVPCIRLRTFLHVFLRLPLEPMLQPNVQVPPLTSSPAEADVEKENNCLDQMEQVPVKVHDFPA 962 (1051)
T ss_pred hhhhhhhhcccCcc-hhhhHHHHHHHHHHHHhcCCchhhccccccCCCccccchhhhhhcccCCcchhhcCCCccccccC
Confidence 72 111 44433 33344333332211111 11222222222
Q ss_pred -----ecc-hhhhhccccchhccccCCcccccccccCCeeeeccchhhhhhhhHhhhh---heeeeccCCCCCCCCCCCC
Q psy10872 115 -----IDP-LARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVR---GYARIRDKDSGESDEDNSE 185 (259)
Q Consensus 115 -----idp-la~l~a~eqL~~rlqR~P~c~~~k~wk~G~~k~~pia~vqAIe~yl~vr---gY~~~R~~~~~~~dd~~sD 185 (259)
... ..+|+++|||+|.+|||| +|++-| +||+++.+ |||...++ +|..+|+++..+.|+.++|
T Consensus 963 ~~~~r~~~~s~~~~n~~dlk~~~~~h~---~~~~~k--q~kG~~~~----iep~~~~~g~q~~~~~~~~~~~~~Dt~~s~ 1033 (1051)
T KOG0168|consen 963 GTGGRGSQFSTSFFNTHDLKCLLQRHP---TCKNCK--QLKGGNVK----IEPAAEVQGIQRRSVVRKRGFARVDTGSSD 1033 (1051)
T ss_pred cCCcccchhhhheeecccccCccccCc---cccchh--hhcCCCcc----cChhhhchhhHHHHHHhhccccccccccCc
Confidence 333 678999999999999999 999999 99999999 99999985 5888999999999999999
Q ss_pred ccchhhhH
Q psy10872 186 EDIDDTLA 193 (259)
Q Consensus 186 eD~dd~~~ 193 (259)
||.|.+..
T Consensus 1034 d~s~~d~d 1041 (1051)
T KOG0168|consen 1034 DDSDEDFD 1041 (1051)
T ss_pred ccchhhhh
Confidence 99766654
No 3
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=81.67 E-value=1.2 Score=41.40 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.8
Q ss_pred cceeeeEeeCCccCCCchhHHHHHHhhh
Q psy10872 201 ARHKLQFLIGDHPLPYNMTVYQAIRQFS 228 (259)
Q Consensus 201 ~~h~lqfli~d~~LPynmTvyQAirQf~ 228 (259)
....||||-+|++||++||. ++||+|=
T Consensus 289 p~e~lEl~C~gqvL~~~mtL-aTVr~~~ 315 (331)
T PF11816_consen 289 PEEWLELLCNGQVLPPDMTL-ATVRTFI 315 (331)
T ss_pred CCceEEEEeCCeEcCCcCCH-HHHHHhh
Confidence 46699999999999999995 7899983
No 4
>PRK07440 hypothetical protein; Provisional
Probab=36.26 E-value=34 Score=25.34 Aligned_cols=27 Identities=4% Similarity=0.165 Sum_probs=22.5
Q ss_pred eeeeEeeCCcc--CCCchhHHHHHHhhhc
Q psy10872 203 HKLQFLIGDHP--LPYNMTVYQAIRQFSC 229 (259)
Q Consensus 203 h~lqfli~d~~--LPynmTvyQAirQf~~ 229 (259)
+++.+.|||+. +|-++||.+.+++++-
T Consensus 3 ~~m~i~vNG~~~~~~~~~tl~~lL~~l~~ 31 (70)
T PRK07440 3 NPITLQVNGETRTCSSGTSLPDLLQQLGF 31 (70)
T ss_pred CceEEEECCEEEEcCCCCCHHHHHHHcCC
Confidence 46889999985 4558999999999875
No 5
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=35.26 E-value=27 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.8
Q ss_pred eeeEeeCCccC--CCchhHHHHHHhhhc
Q psy10872 204 KLQFLIGDHPL--PYNMTVYQAIRQFSC 229 (259)
Q Consensus 204 ~lqfli~d~~L--PynmTvyQAirQf~~ 229 (259)
.+.|.|||+.+ +-+.||.+|++.-|.
T Consensus 3 ~v~i~idG~~v~~~~G~til~al~~~gi 30 (82)
T PF13510_consen 3 MVTITIDGKPVEVPPGETILEALLAAGI 30 (82)
T ss_dssp EEEEEETTEEEEEEET-BHHHHHHHTT-
T ss_pred EEEEEECCEEEEEcCCCHHHHHHHHCCC
Confidence 68999999998 779999999998875
No 6
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=34.63 E-value=35 Score=24.00 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=19.9
Q ss_pred eEeeCCccC--CCchhHHHHHHhhhc
Q psy10872 206 QFLIGDHPL--PYNMTVYQAIRQFSC 229 (259)
Q Consensus 206 qfli~d~~L--PynmTvyQAirQf~~ 229 (259)
+|.|||+.. |-++||.+++.+++-
T Consensus 2 ~i~vNG~~~~~~~~~tl~~lL~~l~~ 27 (66)
T PRK05659 2 NIQLNGEPRELPDGESVAALLAREGL 27 (66)
T ss_pred EEEECCeEEEcCCCCCHHHHHHhcCC
Confidence 688999865 557999999999874
No 7
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=32.68 E-value=18 Score=28.42 Aligned_cols=29 Identities=41% Similarity=0.794 Sum_probs=19.0
Q ss_pred cccCCeeeeccch---------hhhhhhhHhhhhheee
Q psy10872 142 QWKGGTVKIDPLA---------LVQAIERYLVVRGYAR 170 (259)
Q Consensus 142 ~wk~G~~k~~pia---------~vqAIe~yl~vrgY~~ 170 (259)
+++||+|+.+-|| +..-|||||+-.||..
T Consensus 20 ~f~ggPvGl~tlA~~l~ed~~Tie~v~EPyLiq~G~I~ 57 (76)
T PF05491_consen 20 NFKGGPVGLDTLAAALGEDKETIEDVIEPYLIQIGFIQ 57 (76)
T ss_dssp CSTTS-B-HHHHHHHTTS-HHHHHHTTHHHHHHTTSEE
T ss_pred HcCCCCeeHHHHHHHHCCCHhHHHHHhhHHHHHhhhHh
Confidence 4566777666665 3457899999999854
No 8
>PF06426 SATase_N: Serine acetyltransferase, N-terminal ; InterPro: IPR010493 The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants [] and bacteria [].; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm; PDB: 1T3D_C 3MC4_B 3P47_A 3P1B_A 3Q1X_A 1SSM_A 1S80_C 1SSQ_D 1SST_A 3GVD_L ....
Probab=31.84 E-value=4.2 Score=32.37 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=38.6
Q ss_pred hhhhhhhhcccceeeeccCCCccccccccCCceeecchhhhhccccchhccccCCcccc
Q psy10872 81 TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTS 139 (259)
Q Consensus 81 ssgL~f~~thq~K~~L~R~p~~~~Lkdyssg~vlidpla~l~a~eqL~~rlqR~P~c~~ 139 (259)
.++|.|.+++.+... .-....|+++-..++.-+|-..-++..+|..-..|.|+|.+
T Consensus 34 ~~ALa~~La~kL~~~---~~~~~~l~~~~~~~~~~~p~i~~~~~~Dl~Av~~RDPA~~~ 89 (105)
T PF06426_consen 34 EDALAFRLANKLADP---TLSADQLRDLFRDALEADPEIVEAARADLQAVYERDPACPS 89 (105)
T ss_dssp HHHHHHHHHHHH-BT---TS-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSTT--S
T ss_pred HHHHHHHHHHhcCcc---ccCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCccccc
Confidence 367887777766443 11345677777777777887777778889999999998854
No 9
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=29.14 E-value=39 Score=24.35 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=20.1
Q ss_pred eEeeCCccCCC--chhHHHHHHhhhc
Q psy10872 206 QFLIGDHPLPY--NMTVYQAIRQFSC 229 (259)
Q Consensus 206 qfli~d~~LPy--nmTvyQAirQf~~ 229 (259)
++.|||...++ ++||.+.+.+++-
T Consensus 2 ~i~vNG~~~~~~~~~tl~~ll~~l~~ 27 (65)
T PRK05863 2 IVVVNEEQVEVDEQTTVAALLDSLGF 27 (65)
T ss_pred EEEECCEEEEcCCCCcHHHHHHHcCC
Confidence 67889988755 7999999999874
No 10
>PHA03325 nuclear-egress-membrane-like protein; Provisional
Probab=28.30 E-value=48 Score=33.21 Aligned_cols=41 Identities=24% Similarity=0.514 Sum_probs=32.1
Q ss_pred HHHHHhhhhhccccceeeecCCCCCCchhhhhhhhcccceeeeccCCCcc
Q psy10872 54 IAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCT 103 (259)
Q Consensus 54 V~KL~~~ls~lErFpV~~~d~~~~~g~ssgL~f~~thq~K~~L~R~p~~~ 103 (259)
-+|++.-+.||-|=|..| ..+.|. .-+|.+||||++||..-
T Consensus 76 ~~~~~~gI~qlkR~~~~v--------d~s~i~-~v~~~i~CRlr~~~~~p 116 (418)
T PHA03325 76 YRKFEQGIAQLKRQPDIV--------DPSRID-QVTQSIRCRLRKHPRSP 116 (418)
T ss_pred HHHHHHHHHHhccCcccC--------CHHHHH-HHHhcceeeecCCCCCC
Confidence 478999999999855432 356788 78899999999999554
No 11
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=27.50 E-value=55 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEeeCCccC--CCchhHHHHHHhhhc
Q psy10872 206 QFLIGDHPL--PYNMTVYQAIRQFSC 229 (259)
Q Consensus 206 qfli~d~~L--PynmTvyQAirQf~~ 229 (259)
++.|||..+ |-++||.+++.+++.
T Consensus 2 ~i~vNg~~~~~~~~~tl~~ll~~l~~ 27 (65)
T PRK06944 2 DIQLNQQTLSLPDGATVADALAAYGA 27 (65)
T ss_pred EEEECCEEEECCCCCcHHHHHHhhCC
Confidence 578999885 557999999998864
No 12
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein. The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo.
Probab=27.23 E-value=21 Score=30.14 Aligned_cols=11 Identities=36% Similarity=0.621 Sum_probs=9.4
Q ss_pred CccCCCchhHH
Q psy10872 211 DHPLPYNMTVY 221 (259)
Q Consensus 211 d~~LPynmTvy 221 (259)
|..||||||.+
T Consensus 15 g~~lpYn~T~~ 25 (132)
T cd07451 15 GSKLPYTYTSL 25 (132)
T ss_pred CCCCCccceec
Confidence 67899999985
No 13
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=24.47 E-value=52 Score=23.61 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=19.5
Q ss_pred eEeeCCccCCC--chhHHHHHHhhhc
Q psy10872 206 QFLIGDHPLPY--NMTVYQAIRQFSC 229 (259)
Q Consensus 206 qfli~d~~LPy--nmTvyQAirQf~~ 229 (259)
++.|||+..+. ++||.+.+++.+.
T Consensus 2 ~i~vNg~~~~~~~~~tl~~ll~~l~~ 27 (66)
T PRK08053 2 QILFNDQPMQCAAGQTVHELLEQLNQ 27 (66)
T ss_pred EEEECCeEEEcCCCCCHHHHHHHcCC
Confidence 57899987754 7899999998764
No 14
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=22.82 E-value=58 Score=23.10 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=19.2
Q ss_pred EeeCCccCCC--chhHHHHHHhhhc
Q psy10872 207 FLIGDHPLPY--NMTVYQAIRQFSC 229 (259)
Q Consensus 207 fli~d~~LPy--nmTvyQAirQf~~ 229 (259)
+.|||+.+++ ++||.+.+.+.+-
T Consensus 2 i~iNg~~~~~~~~~tv~~ll~~l~~ 26 (65)
T cd00565 2 ITVNGEPREVEEGATLAELLEELGL 26 (65)
T ss_pred EEECCeEEEcCCCCCHHHHHHHcCC
Confidence 6788888766 8999999999873
No 15
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=20.81 E-value=43 Score=23.45 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=14.5
Q ss_pred cCCCchhHHHHHHhhhccc
Q psy10872 213 PLPYNMTVYQAIRQFSCVG 231 (259)
Q Consensus 213 ~LPynmTvyQAirQf~~~~ 231 (259)
.++.+|||.|||.+.|-..
T Consensus 15 ~~~~g~tl~~~i~~AGG~~ 33 (59)
T PF10531_consen 15 ELPPGTTLSDAIAQAGGLT 33 (59)
T ss_dssp EEETT-BHHHHHHCTTSBB
T ss_pred EECCCCcHHHHHHHhCCCC
Confidence 3567999999999988654
No 16
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=20.76 E-value=88 Score=30.06 Aligned_cols=30 Identities=7% Similarity=0.293 Sum_probs=25.3
Q ss_pred CcceeeeEeeCCccC---CCchhHHHHHHhhhc
Q psy10872 200 GARHKLQFLIGDHPL---PYNMTVYQAIRQFSC 229 (259)
Q Consensus 200 ~~~h~lqfli~d~~L---PynmTvyQAirQf~~ 229 (259)
-.+-|..+.|+|+.+ |-++||+||.|+-|-
T Consensus 64 ~~~~~~~I~IDGk~VeV~~~G~TILeAAr~~GI 96 (297)
T PTZ00305 64 EHKPRAIMFVNKRPVEIIPQEENLLEVLEREGI 96 (297)
T ss_pred ccCCceEEEECCEEEEecCCCChHHHHHHHcCC
Confidence 346689999999985 779999999999875
No 17
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.16 E-value=60 Score=23.98 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=11.1
Q ss_pred chhHHHHHHhhhc
Q psy10872 217 NMTVYQAIRQFSC 229 (259)
Q Consensus 217 nmTvyQAirQf~~ 229 (259)
.|+|||-|||-..
T Consensus 22 Gl~IyQkikqIrg 34 (49)
T PF11044_consen 22 GLSIYQKIKQIRG 34 (49)
T ss_pred HHHHHHHHHHHHh
Confidence 5899999999864
Done!