Query psy10872
Match_columns 259
No_of_seqs 48 out of 50
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 20:36:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j0w_A Downstream of tyrosine 45.6 8.8 0.0003 29.9 1.7 15 62-76 2-16 (103)
2 1ug7_A 2610208M17RIK protein; 27.6 29 0.00099 28.7 2.1 33 46-78 94-126 (128)
3 2cs3_A Protein C14ORF4, MY039 23.7 20 0.00069 28.2 0.5 24 78-101 2-25 (93)
4 1ffv_A CUTS, iron-sulfur prote 19.1 99 0.0034 25.4 3.7 27 203-229 4-35 (163)
5 1ayz_A UBC2, ubiquitin-conjuga 18.3 19 0.00065 29.3 -0.7 7 110-116 84-90 (169)
6 1n62_A Carbon monoxide dehydro 17.9 1.1E+02 0.0037 25.2 3.7 27 203-229 4-35 (166)
7 2cob_A LCOR protein; MLR2, KIA 16.3 49 0.0017 24.7 1.1 13 217-229 30-42 (70)
8 1t3q_A Quinoline 2-oxidoreduct 15.7 93 0.0032 25.1 2.8 30 201-230 8-42 (168)
9 3hrd_D Nicotinate dehydrogenas 14.9 1.4E+02 0.0048 24.6 3.6 27 203-229 4-35 (160)
10 2inc_C TOUB protein; DIIRON, 4 14.8 80 0.0027 24.3 2.0 37 186-222 22-68 (83)
No 1
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=45.64 E-value=8.8 Score=29.90 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=11.0
Q ss_pred hhccccceeeecCCC
Q psy10872 62 SQLEQLPVKVHDLPA 76 (259)
Q Consensus 62 s~lErFpV~~~d~~~ 76 (259)
.+.|+|||.|...+.
T Consensus 2 ~~~~~F~V~v~ps~~ 16 (103)
T 1j0w_A 2 EQSERFNVYLMPSPN 16 (103)
T ss_dssp -CCSEEEEEECCCSS
T ss_pred CcCceeEEEEEeCCC
Confidence 467999999966654
No 2
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=27.62 E-value=29 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=28.3
Q ss_pred CcchHHHHHHHHHhhhhhccccceeeecCCCCC
Q psy10872 46 SAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGT 78 (259)
Q Consensus 46 ~~~pl~~LV~KL~~~ls~lErFpV~~~d~~~~~ 78 (259)
.-+-|..|+.-|.+.+...+-||+.|...++.+
T Consensus 94 ~led~K~l~~~lk~ll~~~~eFP~dV~p~~~~~ 126 (128)
T 1ug7_A 94 KLEDLKKLEPILKNILTYNKEFPFDVQPISGPS 126 (128)
T ss_dssp CSHHHHTHHHHHHTTTTCCSCCSSCCCCSSCCC
T ss_pred CHHHHHHHHHHHHHhcccCCCCCCccCcCCCCC
Confidence 455678889999999999999999999998854
No 3
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=23.71 E-value=20 Score=28.17 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=16.1
Q ss_pred CCchhhhhhhhcccceeeeccCCC
Q psy10872 78 TGSTTALKFFNTHQLKCHLQRHPS 101 (259)
Q Consensus 78 ~g~ssgL~f~~thq~K~~L~R~p~ 101 (259)
+||+++-....+-+|+|.||+.-=
T Consensus 2 s~gss~~~~~~~a~l~CtlC~erL 25 (93)
T 2cs3_A 2 SSGSSGSPMANSGPLCCTICHERL 25 (93)
T ss_dssp CCSSSSCSSCSCCSCCCSSSCSCC
T ss_pred CCCCCCCCCCCCCeeEeecchhhh
Confidence 344444444578999999998543
No 4
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=19.15 E-value=99 Score=25.35 Aligned_cols=27 Identities=4% Similarity=0.085 Sum_probs=21.8
Q ss_pred eeeeEeeCCccC----CCchhHHHHHHh-hhc
Q psy10872 203 HKLQFLIGDHPL----PYNMTVYQAIRQ-FSC 229 (259)
Q Consensus 203 h~lqfli~d~~L----PynmTvyQAirQ-f~~ 229 (259)
..+.|.|||+.. +.+||+..++|+ .+.
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgl 35 (163)
T 1ffv_A 4 KIITVNVNGKAQEKAVEPRTLLIHFLREELNL 35 (163)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCC
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHhcCCC
Confidence 468899999875 579999999998 443
No 5
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=18.32 E-value=19 Score=29.31 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=3.2
Q ss_pred CCceeec
Q psy10872 110 GGTVKID 116 (259)
Q Consensus 110 sg~vlid 116 (259)
+|.|-++
T Consensus 84 ~G~ICl~ 90 (169)
T 1ayz_A 84 NGEICLD 90 (169)
T ss_dssp TSBBCCG
T ss_pred CCeEeeh
Confidence 4444443
No 6
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=17.91 E-value=1.1e+02 Score=25.16 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=21.8
Q ss_pred eeeeEeeCCccC----CCchhHHHHHHh-hhc
Q psy10872 203 HKLQFLIGDHPL----PYNMTVYQAIRQ-FSC 229 (259)
Q Consensus 203 h~lqfli~d~~L----PynmTvyQAirQ-f~~ 229 (259)
..+.|.|||+.. +.+||+.+++|+ .+.
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgl 35 (166)
T 1n62_A 4 AHIELTINGHPVEALVEPRTLLIHFIREQQNL 35 (166)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCC
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHHcCCC
Confidence 468899999875 578999999998 343
No 7
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=16.32 E-value=49 Score=24.67 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=11.8
Q ss_pred chhHHHHHHhhhc
Q psy10872 217 NMTVYQAIRQFSC 229 (259)
Q Consensus 217 nmTvyQAirQf~~ 229 (259)
+|+|++|-++||-
T Consensus 30 ~mS~~~Aak~yGV 42 (70)
T 2cob_A 30 KMSVSKAQSIYGI 42 (70)
T ss_dssp SSCHHHHHHHHTC
T ss_pred CccHHHHHHHhCC
Confidence 4999999999995
No 8
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=15.66 E-value=93 Score=25.10 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=23.5
Q ss_pred cceeeeEeeCCccC----CCchhHHHHHHhh-hcc
Q psy10872 201 ARHKLQFLIGDHPL----PYNMTVYQAIRQF-SCV 230 (259)
Q Consensus 201 ~~h~lqfli~d~~L----PynmTvyQAirQf-~~~ 230 (259)
.+..+.|.|||+.. +.++||.+|+|.- |..
T Consensus 8 ~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~~~gl~ 42 (168)
T 1t3q_A 8 QLMRISATINGKPRVFYVEPRMHLADALREVVGLT 42 (168)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHTTCCT
T ss_pred CcceEEEEECCEEEEEecCCCCcHHHHHHhcCCCC
Confidence 34578999999865 6799999999984 543
No 9
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=14.87 E-value=1.4e+02 Score=24.55 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=21.9
Q ss_pred eeeeEeeCCcc----CCCchhHHHHHHhh-hc
Q psy10872 203 HKLQFLIGDHP----LPYNMTVYQAIRQF-SC 229 (259)
Q Consensus 203 h~lqfli~d~~----LPynmTvyQAirQf-~~ 229 (259)
.++.|.|||+. .+.+||+..++|.- +.
T Consensus 4 ~~i~~~vNG~~~~v~v~p~~tLLd~LR~~lgl 35 (160)
T 3hrd_D 4 ITINLNLNGEARSIVTEPNKRLLDLLREDFGL 35 (160)
T ss_dssp EEEEEEETTEEEEEEECSSSBHHHHHHTTSCC
T ss_pred ceEEEEECCEEEEEecCCCCCHHHHHHHhcCC
Confidence 47899999975 47899999999973 54
No 10
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=14.84 E-value=80 Score=24.32 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=23.6
Q ss_pred ccchhhhHHHHhcC--Cc------ceeeeEeeCC--ccCCCchhHHH
Q psy10872 186 EDIDDTLAAVVITH--GA------RHKLQFLIGD--HPLPYNMTVYQ 222 (259)
Q Consensus 186 eD~dd~~~~~~~~~--~~------~h~lqfli~d--~~LPynmTvyQ 222 (259)
+|-.|..|+.+.-+ |- -+-+..+-+| +.+|-+|||-+
T Consensus 22 ~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae 68 (83)
T 2inc_C 22 EDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSD 68 (83)
T ss_dssp TCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGG
T ss_pred CCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeec
Confidence 45556666555431 11 2247788888 99999999644
Done!