Query psy10872
Match_columns 259
No_of_seqs 48 out of 50
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 20:36:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10872.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10872hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j0wa_ b.55.1.2 (A:) Downstre 70.7 0.94 6.8E-05 33.6 2.0 14 63-76 1-14 (99)
2 d1ixsb1 a.4.5.11 (B:243-318) H 39.4 4.2 0.00031 29.1 0.8 30 141-170 16-54 (76)
3 d1in4a1 a.4.5.11 (A:255-329) H 36.8 3.7 0.00027 29.3 0.2 30 141-170 16-54 (75)
4 d1v97a2 d.15.4.2 (A:3-92) Xant 32.9 18 0.0013 25.7 3.4 30 203-232 2-37 (90)
5 d1nyta1 c.2.1.7 (A:102-271) Sh 28.0 9.7 0.00071 28.0 1.3 15 216-230 137-151 (170)
6 d2dmda3 g.37.1.1 (A:62-90) Zin 27.8 6.8 0.0005 23.6 0.3 10 90-99 2-11 (29)
7 d1n62a2 d.15.4.2 (A:3-81) Carb 27.3 28 0.0021 24.1 3.6 29 203-231 2-35 (79)
8 d1t3qa2 d.15.4.2 (A:7-87) Quin 26.6 27 0.002 24.2 3.4 29 203-231 4-37 (81)
9 d1nvta1 c.2.1.7 (A:111-287) Sh 25.7 11 0.00082 27.7 1.3 19 209-231 140-158 (177)
10 d1npya1 c.2.1.7 (A:103-269) Sh 24.8 12 0.00088 27.6 1.3 15 216-230 134-148 (167)
11 d1vi2a1 c.2.1.7 (A:107-288) Pu 24.3 12 0.00091 27.7 1.3 15 216-230 150-164 (182)
12 d1zud21 d.15.3.2 (2:2-66) Thia 21.0 24 0.0017 23.1 2.1 24 206-229 1-26 (65)
13 d2cqga1 d.58.7.1 (A:96-185) TA 20.4 22 0.0016 23.9 1.8 24 205-230 9-35 (90)
14 d1rm6c2 d.15.4.2 (C:1-81) 4-hy 20.1 40 0.0029 23.3 3.2 31 202-232 2-37 (81)
No 1
>d1j0wa_ b.55.1.2 (A:) Downstream of tyrosine kinase 5, Dok-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.65 E-value=0.94 Score=33.57 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=11.8
Q ss_pred hccccceeeecCCC
Q psy10872 63 QLEQLPVKVHDLPA 76 (259)
Q Consensus 63 ~lErFpV~~~d~~~ 76 (259)
|.|||+|.+..+++
T Consensus 1 ~~~~f~v~i~ps~~ 14 (99)
T d1j0wa_ 1 QSERFNVYLMPSPN 14 (99)
T ss_dssp CCSEEEEEECCCSS
T ss_pred CCceEEEEEccCCC
Confidence 57999999888775
No 2
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=39.36 E-value=4.2 Score=29.08 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=20.9
Q ss_pred ccccCCeeeeccch---------hhhhhhhHhhhhheee
Q psy10872 141 KQWKGGTVKIDPLA---------LVQAIERYLVVRGYAR 170 (259)
Q Consensus 141 k~wk~G~~k~~pia---------~vqAIe~yl~vrgY~~ 170 (259)
++++||+|+.+.|| +..-|||||+-.||..
T Consensus 16 ~~f~ggPVGl~tlA~~lgE~~~TiEdviEPyLiq~G~i~ 54 (76)
T d1ixsb1 16 LRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLK 54 (76)
T ss_dssp SSSCSSCCCSHHHHGGGSSCTTHHHHTSHHHHHHTTSEE
T ss_pred HHhCCCCccHHHHHHHHcCChhHHHHHhhHHHHHHhHHh
Confidence 44556666666555 3456899999999854
No 3
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=36.78 E-value=3.7 Score=29.31 Aligned_cols=30 Identities=33% Similarity=0.685 Sum_probs=21.4
Q ss_pred ccccCCeeeeccch---------hhhhhhhHhhhhheee
Q psy10872 141 KQWKGGTVKIDPLA---------LVQAIERYLVVRGYAR 170 (259)
Q Consensus 141 k~wk~G~~k~~pia---------~vqAIe~yl~vrgY~~ 170 (259)
+++.||+|+++.|| +..-|||||+-.||..
T Consensus 16 ~~f~ggPvGl~tlAa~l~e~~~TiEdviEPyLiq~G~i~ 54 (75)
T d1in4a1 16 EIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLA 54 (75)
T ss_dssp HHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEE
T ss_pred HHhCCCCCcHHHHHHHHcCChhHHHHHhhHHHHHhhHHh
Confidence 34567777777665 3456899999999853
No 4
>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.93 E-value=18 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=23.0
Q ss_pred eeeeEeeCCcc-----CCCchhHHHHHHh-hhcccC
Q psy10872 203 HKLQFLIGDHP-----LPYNMTVYQAIRQ-FSCVGH 232 (259)
Q Consensus 203 h~lqfli~d~~-----LPynmTvyQAirQ-f~~~~~ 232 (259)
.+|.|.+||+. .+.+||..+.+|. .+..+-
T Consensus 2 ~~i~F~lNG~~~~~~~~~p~~tLl~~LR~~~~ltGt 37 (90)
T d1v97a2 2 DELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGT 37 (90)
T ss_dssp CCEEEEETTEEEEETTCCTTCBHHHHHHHTSCCTTS
T ss_pred CeEEEEECCEEEEEccCCCCCCHHHHHHhhcCCCcc
Confidence 36899999953 4679999999995 465544
No 5
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
Probab=28.04 E-value=9.7 Score=27.98 Aligned_cols=15 Identities=33% Similarity=0.226 Sum_probs=12.8
Q ss_pred CchhHHHHHHhhhcc
Q psy10872 216 YNMTVYQAIRQFSCV 230 (259)
Q Consensus 216 ynmTvyQAirQf~~~ 230 (259)
..|-||||+.||.--
T Consensus 137 l~MLi~Qa~~~f~lw 151 (170)
T d1nyta1 137 LGMLVAQAAHAFLLW 151 (170)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 479999999999753
No 6
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.80 E-value=6.8 Score=23.64 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=8.2
Q ss_pred ccceeeeccC
Q psy10872 90 HQLKCHLQRH 99 (259)
Q Consensus 90 hq~K~~L~R~ 99 (259)
.||||+||--
T Consensus 2 rpfkcqlcsy 11 (29)
T d2dmda3 2 RPFKCQICPY 11 (29)
T ss_dssp CCEECSSSSC
T ss_pred Ccceeeeccc
Confidence 5899999963
No 7
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=27.28 E-value=28 Score=24.09 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=22.2
Q ss_pred eeeeEeeCCccC----CCchhHHHHHHh-hhccc
Q psy10872 203 HKLQFLIGDHPL----PYNMTVYQAIRQ-FSCVG 231 (259)
Q Consensus 203 h~lqfli~d~~L----PynmTvyQAirQ-f~~~~ 231 (259)
-.+.|.|||... +.+||+.+++|. ++..+
T Consensus 2 ~~i~~~lNG~~~~~~v~p~~~Ll~~LR~~~~ltg 35 (79)
T d1n62a2 2 AHIELTINGHPVEALVEPRTLLIHFIREQQNLTG 35 (79)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCCTT
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHhhhcCCcc
Confidence 367888888765 789999999995 45443
No 8
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Probab=26.56 E-value=27 Score=24.22 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=22.2
Q ss_pred eeeeEeeCCcc----CCCchhHHHHHHh-hhccc
Q psy10872 203 HKLQFLIGDHP----LPYNMTVYQAIRQ-FSCVG 231 (259)
Q Consensus 203 h~lqfli~d~~----LPynmTvyQAirQ-f~~~~ 231 (259)
-++.|-|||.. .+.++|+.+++|. ++..+
T Consensus 4 ~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~l~ltg 37 (81)
T d1t3qa2 4 MRISATINGKPRVFYVEPRMHLADALREVVGLTG 37 (81)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHTTCCTT
T ss_pred EEEEEEECCEEEEEecCCCCCHHHHHhhhhCCcc
Confidence 46788888875 4789999999994 56543
No 9
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=25.74 E-value=11 Score=27.69 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=14.9
Q ss_pred eCCccCCCchhHHHHHHhhhccc
Q psy10872 209 IGDHPLPYNMTVYQAIRQFSCVG 231 (259)
Q Consensus 209 i~d~~LPynmTvyQAirQf~~~~ 231 (259)
|+|. .|-||||+.||.--.
T Consensus 140 i~Gl----~MLv~Qa~~qf~lwt 158 (177)
T d1nvta1 140 INGL----GMLIYQGAVAFKIWT 158 (177)
T ss_dssp ECTH----HHHHHHHHHHHHHHH
T ss_pred cCCH----HHHHHHHHHHHHHHH
Confidence 5554 799999999998643
No 10
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}
Probab=24.81 E-value=12 Score=27.60 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=13.1
Q ss_pred CchhHHHHHHhhhcc
Q psy10872 216 YNMTVYQAIRQFSCV 230 (259)
Q Consensus 216 ynmTvyQAirQf~~~ 230 (259)
..|-||||+.||.--
T Consensus 134 l~Mli~Qa~~~f~lw 148 (167)
T d1npya1 134 AAVIVLQAVEQFELY 148 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999999864
No 11
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}
Probab=24.32 E-value=12 Score=27.66 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.6
Q ss_pred CchhHHHHHHhhhcc
Q psy10872 216 YNMTVYQAIRQFSCV 230 (259)
Q Consensus 216 ynmTvyQAirQf~~~ 230 (259)
..|-||||+.||---
T Consensus 150 l~Mli~Qa~~~f~iw 164 (182)
T d1vi2a1 150 YGMLLWQGAEQFTLW 164 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999999754
No 12
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}
Probab=21.02 E-value=24 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.6
Q ss_pred eEeeCCcc--CCCchhHHHHHHhhhc
Q psy10872 206 QFLIGDHP--LPYNMTVYQAIRQFSC 229 (259)
Q Consensus 206 qfli~d~~--LPynmTvyQAirQf~~ 229 (259)
++.|||+. +|-++||.+.+.+++-
T Consensus 1 ~I~vNg~~~~~~~~~tl~~ll~~l~~ 26 (65)
T d1zud21 1 QILFNDQAMQCAAGQTVHELLEQLDQ 26 (65)
T ss_dssp CEEETTEEECCCTTCBHHHHHHHHTC
T ss_pred CEEECCEEEEcCCCCcHHHHHHHcCC
Confidence 46788875 6778999999999885
No 13
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.36 E-value=22 Score=23.86 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=18.2
Q ss_pred eeEeeCCccCCCchh---HHHHHHhhhcc
Q psy10872 205 LQFLIGDHPLPYNMT---VYQAIRQFSCV 230 (259)
Q Consensus 205 lqfli~d~~LPynmT---vyQAirQf~~~ 230 (259)
-.++|++ |||++| |++...+||.+
T Consensus 9 ~~lfV~n--Lp~~~te~~l~~~F~~~G~i 35 (90)
T d2cqga1 9 SDLIVLG--LPWKTTEQDLKEYFSTFGEV 35 (90)
T ss_dssp CCEEEES--CCSSCCHHHHHHHHGGGSCE
T ss_pred CeEEEEC--CCCCCCHHHHHHHHHhhccc
Confidence 3578888 999997 66777777764
No 14
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=20.06 E-value=40 Score=23.34 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=23.2
Q ss_pred ceeeeEeeCCcc----CCCchhHHHHHHh-hhcccC
Q psy10872 202 RHKLQFLIGDHP----LPYNMTVYQAIRQ-FSCVGH 232 (259)
Q Consensus 202 ~h~lqfli~d~~----LPynmTvyQAirQ-f~~~~~ 232 (259)
+..+.|.|||.. .|.++|+..++|. ++..+-
T Consensus 2 ~~~i~~~lNG~~~~~~v~~~~~Ll~~LR~~lgltgt 37 (81)
T d1rm6c2 2 KNILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGT 37 (81)
T ss_dssp EEEEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTS
T ss_pred CceEEEEECCEEEEEecCCCCCHHHHHHHhhCCccc
Confidence 346888888865 4789999999995 565543
Done!