Your job contains 1 sequence.
>psy10872
MGLDDKISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGC
VSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLAR
MCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESD
EDNSEEDIDDTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGH
GGCETESESEAPLGSASVW
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10872
(259 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|B4F6W9 - symbol:trip12 "E3 ubiquitin-protein li... 359 6.5e-33 3
FB|FBgn0260794 - symbol:ctrip "circadian trip" species:72... 376 8.3e-33 1
ZFIN|ZDB-GENE-041111-262 - symbol:trip12 "thyroid hormone... 357 5.3e-31 1
UNIPROTKB|E1B7Q7 - symbol:TRIP12 "E3 ubiquitin-protein li... 353 1.3e-30 1
UNIPROTKB|Q14669 - symbol:TRIP12 "E3 ubiquitin-protein li... 353 1.3e-30 1
UNIPROTKB|E2R657 - symbol:TRIP12 "Uncharacterized protein... 353 1.3e-30 1
UNIPROTKB|I3LK74 - symbol:TRIP12 "Uncharacterized protein... 353 1.3e-30 1
UNIPROTKB|J9NRQ4 - symbol:TRIP12 "Uncharacterized protein... 353 1.3e-30 1
RGD|1306607 - symbol:Trip12 "thyroid hormone receptor int... 353 1.3e-30 1
MGI|MGI:1309481 - symbol:Trip12 "thyroid hormone receptor... 353 1.3e-30 1
UNIPROTKB|E1BZV7 - symbol:TRIP12 "Uncharacterized protein... 344 1.2e-29 1
UNIPROTKB|F6X7F9 - symbol:TRIP12 "Uncharacterized protein... 312 3.0e-26 1
>UNIPROTKB|B4F6W9 [details] [associations]
symbol:trip12 "E3 ubiquitin-protein ligase TRIP12"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:1901315 "negative regulation of histone H2A K63-linked
ubiquitination" evidence=ISS] [GO:2000780 "negative regulation of
double-strand break repair" evidence=ISS] Pfam:PF00632
InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 GO:GO:0005654 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006281 GO:GO:0006974 GO:GO:0009790
GO:GO:0004842 GO:GO:0042787 InterPro:IPR004170 Pfam:PF02825
PROSITE:PS50918 SUPFAM:SSF56204 GO:GO:2000780 GO:GO:1901315
KO:K10590 CTD:9320 HOVERGEN:HBG062085 EMBL:AAMC01022090
EMBL:AAMC01022091 EMBL:AAMC01022092 EMBL:AAMC01022093
EMBL:AAMC01022094 EMBL:AAMC01022095 EMBL:AAMC01022096 EMBL:BC168042
EMBL:BC166201 RefSeq:NP_001136384.1 UniGene:Str.66021
ProteinModelPortal:B4F6W9 STRING:B4F6W9 GeneID:100158539
KEGG:xtr:100158539 Xenbase:XB-GENE-6071044 Uniprot:B4F6W9
Length = 2056
Score = 359 (131.4 bits), Expect = 6.5e-33, Sum P(3) = 6.5e-33
Identities = 77/138 (55%), Positives = 87/138 (63%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP CT++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1324 NTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1383
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IGDH LPYNMTVYQA+RQ+S
Sbjct: 1384 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQYSIQTEEERES---- 1438
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1439 ---TDDESN-PLGRAGIW 1452
Score = 315 (115.9 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 65/118 (55%), Positives = 80/118 (67%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEP-LAALIAKLNGCVSQLE 65
++S + R RL++FLHVF PL + D + L AL+ K+N C+SQ+E
Sbjct: 1238 LTSKSDKDIVSRDIRLKRFLHVFFGTPLPGEEPLAKLDPTENRHLLALVHKMNNCLSQME 1297
Query: 66 QLPVKVHDLPAG--TGS--TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLA 119
Q PVKVHD P+G TGS + ALKFFNTHQLKC LQRHP CT++KQWKGG VKIDPLA
Sbjct: 1298 QFPVKVHDFPSGNGTGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLA 1355
Score = 37 (18.1 bits), Expect = 6.5e-33, Sum P(3) = 6.5e-33
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 62 SQLEQLPVKVHDLP 75
S LEQ K H LP
Sbjct: 34 SNLEQAENKTHSLP 47
Score = 36 (17.7 bits), Expect = 6.5e-33, Sum P(3) = 6.5e-33
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 100 PSCTSLKQWKGGTVKIDPLARMCNTHQLKC 129
PS + KGG+ PL + T C
Sbjct: 164 PSTSKAHSRKGGSQGTSPLPKRKRTELSPC 193
>FB|FBgn0260794 [details] [associations]
symbol:ctrip "circadian trip" species:7227 "Drosophila
melanogaster" [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=ISS] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0006464 "cellular protein modification
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0042752 "regulation
of circadian rhythm" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024
InterPro:IPR018123 PROSITE:PS50237 SMART:SM00119 SMART:SM00678
EMBL:AE014297 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0022008 GO:GO:0008270 GO:GO:0042752 GO:GO:0016567
GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170 Pfam:PF02825
PROSITE:PS50918 SUPFAM:SSF56204 GeneTree:ENSGT00530000063470
RefSeq:NP_001189170.1 RefSeq:NP_649496.3 STRING:Q9VN58
EnsemblMetazoa:FBtr0301437 EnsemblMetazoa:FBtr0303911 GeneID:40596
KEGG:dme:Dmel_CG42574 UCSC:CG17735-RB FlyBase:FBgn0260794
InParanoid:Q9VN58 OMA:SAGANEN OrthoDB:EOG47H44W PhylomeDB:Q9VN58
GenomeRNAi:40596 NextBio:819575 ArrayExpress:Q9VN58 Bgee:Q9VN58
Uniprot:Q9VN58
Length = 3140
Score = 376 (137.4 bits), Expect = 8.3e-33, P = 8.3e-33
Identities = 80/141 (56%), Positives = 95/141 (67%)
Query: 120 RMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXX 179
R NTHQLKC+LQRHP C +L+QWKGGTVKIDPLA+VQAIERYLVVRGY IR
Sbjct: 2237 RFFNTHQLKCNLQRHPQCNNLRQWKGGTVKIDPLAMVQAIERYLVVRGYGGIRADSDDDS 2296
Query: 180 XXXXXXXXXXXTLAAVVITHGA-RHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXX 238
+AAVV++ + RHKLQF IGDH LPYNMTVYQA++QFS +
Sbjct: 2297 EEDMDD-----NVAAVVLSQASFRHKLQFTIGDHVLPYNMTVYQAVKQFSPLVSEQP--- 2348
Query: 239 XXXXCETESESEAPLGSASVW 259
ET++ESE LG+AS+W
Sbjct: 2349 -----ETDNESETLLGNASIW 2364
Score = 349 (127.9 bits), Expect = 6.1e-30, P = 6.1e-30
Identities = 70/111 (63%), Positives = 83/111 (74%)
Query: 14 GSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLA--ALIAKLNGCVSQLEQLPVKV 71
G ER RLR F+HVFA PLE + + + EP+A A +AKLNGCV+QLEQ PVKV
Sbjct: 2161 GLVERDARLRSFMHVFAGLPLEPLLQNVGQMPTIEPIAFGAFVAKLNGCVTQLEQFPVKV 2220
Query: 72 HDLPAGTG---STTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLA 119
HD PAG G + +AL+FFNTHQLKC+LQRHP C +L+QWKGGTVKIDPLA
Sbjct: 2221 HDFPAGPGGRSNQSALRFFNTHQLKCNLQRHPQCNNLRQWKGGTVKIDPLA 2271
>ZFIN|ZDB-GENE-041111-262 [details] [associations]
symbol:trip12 "thyroid hormone receptor interactor
12" species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006464 "cellular protein modification process"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:1901315 "negative regulation of histone H2A
K63-linked ubiquitination" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:2000780 "negative regulation of double-strand
break repair" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 ZFIN:ZDB-GENE-041111-262 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0016567 GO:GO:0005622
GO:GO:0004842 InterPro:IPR004170 Pfam:PF02825 PROSITE:PS50918
SUPFAM:SSF56204 GeneTree:ENSGT00530000063470 EMBL:BX255887
EMBL:CU928079 IPI:IPI00866688 Ensembl:ENSDART00000087566
ArrayExpress:F1Q529 Bgee:F1Q529 Uniprot:F1Q529
Length = 2095
Score = 357 (130.7 bits), Expect = 5.3e-31, P = 5.3e-31
Identities = 77/138 (55%), Positives = 88/138 (63%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP CT++KQWKGG VKIDPLALVQAIERYLVVRGY RIR
Sbjct: 1365 NTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDEDSDDDG 1424
Query: 183 XXXXXXXXTLAAVVITHGA-RHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G+ RH+LQF IG+H LPYNMTVYQA+RQFS
Sbjct: 1425 SDDEIDE-SLAAQFLNSGSVRHRLQFYIGEHLLPYNMTVYQAVRQFSLQAEEERES---- 1479
Query: 242 XCETESESEAPLGSASVW 259
T+ E+ PLG A +W
Sbjct: 1480 ---TDDEAN-PLGRAGIW 1493
Score = 325 (119.5 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 63/118 (53%), Positives = 82/118 (69%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAE-PLAALIAKLNGCVSQLE 65
++S++ + R R+++FLHVF CP+ D + PL AL+ K+N C+SQ+E
Sbjct: 1279 LTSNSERDTISRDERIKRFLHVFFGCPIPGQEPPGRLDPTENGPLLALVHKMNNCLSQME 1338
Query: 66 QLPVKVHDLPAGTGS----TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLA 119
Q PVKVHD P+G G+ + ALKFFNTHQLKC LQRHP CT++KQWKGG VKIDPLA
Sbjct: 1339 QFPVKVHDFPSGNGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLA 1396
>UNIPROTKB|E1B7Q7 [details] [associations]
symbol:TRIP12 "E3 ubiquitin-protein ligase TRIP12"
species:9913 "Bos taurus" [GO:0009790 "embryo development"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS] [GO:2000780
"negative regulation of double-strand break repair" evidence=ISS]
[GO:1901315 "negative regulation of histone H2A K63-linked
ubiquitination" evidence=ISS] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=ISS] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 GO:GO:0005654 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006281 GO:GO:0006974 GO:GO:0009790
GO:GO:0004842 GO:GO:0042787 InterPro:IPR004170 PROSITE:PS50918
SUPFAM:SSF56204 GeneTree:ENSGT00530000063470 GO:GO:2000780
GO:GO:1901315 KO:K10590 EMBL:DAAA02006173 EMBL:DAAA02006174
EMBL:DAAA02006175 EMBL:BC119851 IPI:IPI00825667
RefSeq:NP_001178132.1 UniGene:Bt.6328 Ensembl:ENSBTAT00000038151
GeneID:514387 KEGG:bta:514387 CTD:9320 OMA:LNMNGCS NextBio:20871310
Uniprot:E1B7Q7
Length = 1992
Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 76/138 (55%), Positives = 86/138 (62%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1262 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1321
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS
Sbjct: 1322 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1376
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1377 ---TDDESN-PLGRAGIW 1390
Score = 319 (117.4 bits), Expect = 5.4e-27, P = 5.4e-27
Identities = 63/123 (51%), Positives = 81/123 (65%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL +E + PL AL+ K+N C+SQ+E
Sbjct: 1171 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIERVEPVGNAPLLALVHKMNNCLSQME 1230
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G G+ + ALKFFNTHQLKC LQRHP C ++KQWKGG VKID
Sbjct: 1231 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKID 1290
Query: 117 PLA 119
PLA
Sbjct: 1291 PLA 1293
>UNIPROTKB|Q14669 [details] [associations]
symbol:TRIP12 "E3 ubiquitin-protein ligase TRIP12"
species:9606 "Homo sapiens" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=NAS] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA;IMP;NAS;IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process"
evidence=IDA;IMP;IBA] [GO:0046966 "thyroid hormone receptor
binding" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:1901315 "negative regulation of histone H2A
K63-linked ubiquitination" evidence=IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:2000780 "negative regulation
of double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009790 "embryo development" evidence=ISS]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 UniPathway:UPA00143 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0005654 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006281 GO:GO:0006974 GO:GO:0009790 GO:GO:0004842
GO:GO:0046966 GO:GO:0042787 InterPro:IPR004170 PROSITE:PS50918
EMBL:AC093384 SUPFAM:SSF56204 eggNOG:COG5021 GO:GO:2000780
GO:GO:1901315 KO:K10590 CTD:9320 OMA:LNMNGCS EMBL:EU489742
EMBL:D28476 EMBL:AC009973 EMBL:AC105380 EMBL:BC114556 EMBL:BC113891
EMBL:L40383 IPI:IPI00032342 IPI:IPI00783250 IPI:IPI00871861
RefSeq:NP_004229.1 UniGene:Hs.591633 ProteinModelPortal:Q14669
SMR:Q14669 DIP:DIP-58584N IntAct:Q14669 MINT:MINT-1192877
STRING:Q14669 PhosphoSite:Q14669 DMDM:2499839 PaxDb:Q14669
PRIDE:Q14669 Ensembl:ENST00000283943 Ensembl:ENST00000389044
Ensembl:ENST00000389045 GeneID:9320 KEGG:hsa:9320 UCSC:uc002vpw.1
GeneCards:GC02M230595 HGNC:HGNC:12306 MIM:604506 neXtProt:NX_Q14669
PharmGKB:PA36985 HOGENOM:HOG000007873 HOVERGEN:HBG062085
OrthoDB:EOG4MCWZF ChiTaRS:TRIP12 GenomeRNAi:9320 NextBio:34913
ArrayExpress:Q14669 Bgee:Q14669 CleanEx:HS_TRIP12
Genevestigator:Q14669 GermOnline:ENSG00000153827 Uniprot:Q14669
Length = 1992
Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 76/138 (55%), Positives = 86/138 (62%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1262 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1321
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS
Sbjct: 1322 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1376
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1377 ---TDDESN-PLGRAGIW 1390
Score = 312 (114.9 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 62/123 (50%), Positives = 80/123 (65%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL + + PL AL+ K+N C+SQ+E
Sbjct: 1171 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGNAPLLALVHKMNNCLSQME 1230
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G G+ + ALKFFNTHQLKC LQRHP C ++KQWKGG VKID
Sbjct: 1231 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKID 1290
Query: 117 PLA 119
PLA
Sbjct: 1291 PLA 1293
>UNIPROTKB|E2R657 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
PROSITE:PS50918 SUPFAM:SSF56204 Ensembl:ENSCAFT00000016899
Uniprot:E2R657
Length = 1993
Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 76/138 (55%), Positives = 86/138 (62%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1263 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1322
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS
Sbjct: 1323 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1377
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1378 ---TDDESN-PLGRAGIW 1391
Score = 312 (114.9 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 62/123 (50%), Positives = 80/123 (65%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL + + PL AL+ K+N C+SQ+E
Sbjct: 1172 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGNAPLLALVHKMNNCLSQME 1231
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G G+ + ALKFFNTHQLKC LQRHP C ++KQWKGG VKID
Sbjct: 1232 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKID 1291
Query: 117 PLA 119
PLA
Sbjct: 1292 PLA 1294
>UNIPROTKB|I3LK74 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000780 "negative regulation of double-strand break
repair" evidence=IEA] [GO:1901315 "negative regulation of histone
H2A K63-linked ubiquitination" evidence=IEA] [GO:0046966 "thyroid
hormone receptor binding" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
Pfam:PF02825 PROSITE:PS50918 SUPFAM:SSF56204
GeneTree:ENSGT00530000063470 OMA:LNMNGCS Ensembl:ENSSSCT00000029290
Uniprot:I3LK74
Length = 2002
Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 76/138 (55%), Positives = 86/138 (62%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1299 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1358
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS
Sbjct: 1359 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1413
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1414 ---TDDESN-PLGRAGIW 1427
Score = 315 (115.9 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 62/123 (50%), Positives = 81/123 (65%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL + + + PL AL+ K+N C+SQ+E
Sbjct: 1208 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGSAPLLALVHKMNNCLSQME 1267
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G G+ + ALKFFNTHQLKC LQRHP C ++KQWKGG VKID
Sbjct: 1268 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKID 1327
Query: 117 PLA 119
PLA
Sbjct: 1328 PLA 1330
>UNIPROTKB|J9NRQ4 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
PROSITE:PS50918 SUPFAM:SSF56204 GeneTree:ENSGT00530000063470
EMBL:AAEX03014420 Ensembl:ENSCAFT00000045557 OMA:GNGTGGX
Uniprot:J9NRQ4
Length = 2011
Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 76/138 (55%), Positives = 86/138 (62%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1281 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1340
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS
Sbjct: 1341 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1395
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1396 ---TDDESN-PLGRAGIW 1409
Score = 312 (114.9 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 62/123 (50%), Positives = 80/123 (65%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL + + PL AL+ K+N C+SQ+E
Sbjct: 1190 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGNAPLLALVHKMNNCLSQME 1249
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G G+ + ALKFFNTHQLKC LQRHP C ++KQWKGG VKID
Sbjct: 1250 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKID 1309
Query: 117 PLA 119
PLA
Sbjct: 1310 PLA 1312
>RGD|1306607 [details] [associations]
symbol:Trip12 "thyroid hormone receptor interactor 12"
species:10116 "Rattus norvegicus" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO;ISS;IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005654 "nucleoplasm" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=IBA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO;ISS] [GO:0009790 "embryo development"
evidence=ISO;ISS] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process"
evidence=ISO;ISS;IBA] [GO:0046966 "thyroid hormone receptor
binding" evidence=ISO] [GO:1901315 "negative regulation of histone
H2A K63-linked ubiquitination" evidence=ISO;ISS] [GO:2000780
"negative regulation of double-strand break repair"
evidence=ISO;ISS] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR016024 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 RGD:1306607 GO:GO:0005737 GO:GO:0005654
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006281
GO:GO:0006974 GO:GO:0009790 GO:GO:0004842 GO:GO:0042787
InterPro:IPR004170 Pfam:PF02825 PROSITE:PS50918 SUPFAM:SSF56204
GO:GO:2000780 GO:GO:1901315 KO:K10590 CTD:9320 EMBL:BC088304
EMBL:BC100624 IPI:IPI00362998 RefSeq:NP_001026829.1 UniGene:Rn.8277
PRIDE:F1LP64 Ensembl:ENSRNOT00000022873 GeneID:316575
KEGG:rno:316575 NextBio:671026 ArrayExpress:F1LP64 Uniprot:F1LP64
Length = 2025
Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 76/138 (55%), Positives = 86/138 (62%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1295 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1354
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS
Sbjct: 1355 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDERES---- 1409
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1410 ---TDDESN-PLGRAGIW 1423
Score = 316 (116.3 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL V + PL AL+ K+N C+SQ+E
Sbjct: 1204 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPVGRVEPVGHAPLLALVHKMNNCLSQME 1263
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G GS + ALKFFNTHQLKC LQRHP C ++KQWKGG VKID
Sbjct: 1264 QFPVKVHDFPSGNGSGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKID 1323
Query: 117 PLA 119
PLA
Sbjct: 1324 PLA 1326
>MGI|MGI:1309481 [details] [associations]
symbol:Trip12 "thyroid hormone receptor interactor 12"
species:10090 "Mus musculus" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISO;IBA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006464 "cellular
protein modification process" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0009790 "embryo
development" evidence=IMP] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISO;IBA]
[GO:0046966 "thyroid hormone receptor binding" evidence=ISO]
[GO:1901315 "negative regulation of histone H2A K63-linked
ubiquitination" evidence=ISO] [GO:2000780 "negative regulation of
double-strand break repair" evidence=ISO] Pfam:PF00632
InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 MGI:MGI:1309481 GO:GO:0005737 GO:GO:0005654
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006281
GO:GO:0006974 GO:GO:0009790 GO:GO:0004842 GO:GO:0042787
InterPro:IPR004170 Pfam:PF02825 PROSITE:PS50918 SUPFAM:SSF56204
GeneTree:ENSGT00530000063470 GO:GO:2000780 GO:GO:1901315 KO:K10590
CTD:9320 OMA:LNMNGCS ChiTaRS:TRIP12 EMBL:AC123882 EMBL:CH466629
EMBL:AK034814 EMBL:AK134397 EMBL:AK158807 EMBL:BC034113
RefSeq:NP_598736.4 UniGene:Mm.209265 IntAct:G5E870 PRIDE:G5E870
Ensembl:ENSMUST00000027421 GeneID:14897 KEGG:mmu:14897
NextBio:287187 Bgee:G5E870 Uniprot:G5E870
Length = 2025
Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 76/138 (55%), Positives = 86/138 (62%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1295 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1354
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IG+H LPYNMTVYQA+RQFS
Sbjct: 1355 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDERES---- 1409
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1410 ---TDDESN-PLGRAGIW 1423
Score = 309 (113.8 bits), Expect = 6.4e-26, P = 6.4e-26
Identities = 62/112 (55%), Positives = 75/112 (66%)
Query: 18 RQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLEQLPVKVHDLPA 76
R+ RL++FLHVF PL V + PL AL+ K+N C+SQ+EQ PVKVHD P+
Sbjct: 1215 REIRLKRFLHVFFSSPLPGEEPVGRVEPVGHAPLLALVHKMNNCLSQMEQFPVKVHDFPS 1274
Query: 77 GTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLA 119
G G+ + ALKFFNTHQLKC LQRHP C ++KQWKGG VKIDPLA
Sbjct: 1275 GNGAGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLA 1326
>UNIPROTKB|E1BZV7 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0046966 "thyroid hormone receptor
binding" evidence=IEA] [GO:1901315 "negative regulation of histone
H2A K63-linked ubiquitination" evidence=IEA] [GO:2000780 "negative
regulation of double-strand break repair" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
PROSITE:PS50918 SUPFAM:SSF56204 GeneTree:ENSGT00530000063470
OMA:LNMNGCS EMBL:AC147645 IPI:IPI00588987
Ensembl:ENSGALT00000004623 Uniprot:E1BZV7
Length = 2035
Score = 344 (126.2 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 74/138 (53%), Positives = 85/138 (61%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1305 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1364
Query: 183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
+LAA + G RH+LQF IGDH LPYNMTVYQA++ +S
Sbjct: 1365 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVKLYSLQAEEERES---- 1419
Query: 242 XCETESESEAPLGSASVW 259
T+ ES PLG A +W
Sbjct: 1420 ---TDDESN-PLGRAGIW 1433
Score = 317 (116.6 bits), Expect = 9.1e-27, P = 9.1e-27
Identities = 64/119 (53%), Positives = 80/119 (67%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLE 65
++S + + R RL++FLHVF PL + + PL AL+ K+N C+SQ+E
Sbjct: 1218 LTSKSEKDAVSRDIRLKRFLHVFFSSPLPGEEPLGRLEPLENAPLLALVHKMNNCLSQME 1277
Query: 66 QLPVKVHDLPAG--TGSTT---ALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLA 119
Q PVKVHD P+G TGS+ ALKFFNTHQLKC LQRHP C ++KQWKGG VKIDPLA
Sbjct: 1278 QFPVKVHDFPSGNGTGSSRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLA 1336
>UNIPROTKB|F6X7F9 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
Pfam:PF02825 PROSITE:PS50918 SUPFAM:SSF56204
GeneTree:ENSGT00530000063470 Ensembl:ENSCAFT00000016899
EMBL:AAEX03014420 Uniprot:F6X7F9
Length = 1980
Score = 312 (114.9 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 62/123 (50%), Positives = 80/123 (65%)
Query: 7 ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKD-CSAEPLAALIAKLNGCVSQLE 65
++S + + R+ RL++FLHVF PL + + PL AL+ K+N C+SQ+E
Sbjct: 1208 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGNAPLLALVHKMNNCLSQME 1267
Query: 66 QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
Q PVKVHD P+G G+ + ALKFFNTHQLKC LQRHP C ++KQWKGG VKID
Sbjct: 1268 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKID 1327
Query: 117 PLA 119
PLA
Sbjct: 1328 PLA 1330
Score = 234 (87.4 bits), Expect = 5.9e-18, P = 5.9e-18
Identities = 42/50 (84%), Positives = 45/50 (90%)
Query: 123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIR 172
NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R
Sbjct: 1299 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR 1348
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.134 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 259 229 0.00082 113 3 11 22 0.37 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 610 (65 KB)
Total size of DFA: 190 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.55u 0.09s 17.64t Elapsed: 00:00:04
Total cpu time: 17.55u 0.09s 17.64t Elapsed: 00:00:04
Start: Thu Aug 15 12:20:49 2013 End: Thu Aug 15 12:20:53 2013