RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10872
         (259 letters)



>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon
           Thermococcus gorgonarius [TaxId: 71997]}
          Length = 426

 Score = 27.2 bits (59), Expect = 2.3
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 60  CVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLA 119
               LE +     ++   T +           ++  ++        ++     V  + L 
Sbjct: 257 TTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVKEV--TEKLSKYEVPPEKLV 314

Query: 120 RMCN-THQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGE 178
                T  LK +    P     K+     +KI P  ++     Y+V++G  RI D+    
Sbjct: 315 IYEQITRDLKDYKATGPHVAVAKRLAARGIKIRPGTVI----SYIVLKGSGRIGDRAIPF 370

Query: 179 SDEDNSEEDID 189
            + D ++   D
Sbjct: 371 DEFDPAKHKYD 381


>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 467

 Score = 26.1 bits (57), Expect = 5.0
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 155 LVQAIERYLVVR-GYARIRDKDSGESDEDNSEE 186
            V+A+E +  V  GY+ +RD        D+ ++
Sbjct: 396 AVEALESHCRVNGGYSGLRDVYIARESYDDVQQ 428


>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId:
           562]}
          Length = 279

 Score = 25.4 bits (55), Expect = 6.5
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 144 KGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEEDIDDTLAAVVITHGARH 203
            G   K +  A+    E+ +      +   ++  +  +  +  + D   AA+ +  G   
Sbjct: 94  SGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGG--- 150

Query: 204 KLQFLIGDHPLPYNMTVYQAIRQF 227
                     LP +  V  A++  
Sbjct: 151 ----HGALIGLPESQDVAAALQWA 170


>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
           domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 246

 Score = 25.6 bits (55), Expect = 7.1
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 11/109 (10%)

Query: 142 QWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEEDIDDTLAAVVITHGA 201
            W   ++ ++    +Q +   L  RG  +   +      +  S E++    A V+I    
Sbjct: 131 GWFNTSLILEGRKYLQWLTERLTERG-VKFFLR------KVESFEEVARGGADVIINCTG 183

Query: 202 RHKLQFLIGDHPLPYNMTVYQAIRQFSCV----GHGENGGQGHGGCETE 246
                       +       +     + V    GHG  G   H GC  E
Sbjct: 184 VWAGVLQPDPLQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALE 232


>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC
           {Escherichia coli [TaxId: 562]}
          Length = 117

 Score = 24.8 bits (53), Expect = 7.5
 Identities = 9/106 (8%), Positives = 27/106 (25%), Gaps = 10/106 (9%)

Query: 108 WKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRG 167
                  +   +R+C+    K      P   +  + +           V  +        
Sbjct: 22  MGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRP------NTVNVVPGKTTFTI 75

Query: 168 YARIRDKDSGESDEDNSEEDIDDTLAAVVITHGARHKLQFLIGDHP 213
             R  D         +  + +++ + A+         +   + + P
Sbjct: 76  DCRHTDAA----VLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEP 117


>d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 107

 Score = 24.3 bits (53), Expect = 8.3
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 183 NSEEDIDDTLAAVVITHGARHKL 205
           N ++++DD  A  +I+H    + 
Sbjct: 78  NEQDEMDDVFAKFLISHREEDRE 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 975,391
Number of extensions: 45414
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 8
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)