Query psy10876
Match_columns 319
No_of_seqs 189 out of 1443
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:41:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2287|consensus 100.0 2.9E-53 6.2E-58 404.3 24.7 243 45-291 89-347 (349)
2 PLN03133 beta-1,3-galactosyltr 100.0 4.2E-52 9E-57 414.7 25.8 237 48-289 382-632 (636)
3 PLN03193 beta-1,3-galactosyltr 100.0 1.6E-48 3.4E-53 369.5 21.5 212 46-262 134-362 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 5.5E-47 1.2E-51 334.0 16.2 184 65-250 1-195 (195)
5 KOG2288|consensus 100.0 4E-41 8.6E-46 297.6 11.8 250 48-312 8-271 (274)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 3.7E-33 8.1E-38 261.2 19.6 222 46-283 75-358 (382)
7 PF02434 Fringe: Fringe-like; 99.9 9.8E-23 2.1E-27 186.5 11.6 208 51-271 6-231 (252)
8 KOG2246|consensus 99.8 4.6E-20 9.9E-25 176.1 15.1 169 47-249 87-268 (364)
9 PLN03153 hypothetical protein; 99.6 1.3E-13 2.8E-18 134.6 17.5 180 50-254 121-317 (537)
10 KOG3708|consensus 98.6 4.6E-08 9.9E-13 94.9 6.6 157 50-246 25-189 (681)
11 PF13641 Glyco_tranf_2_3: Glyc 97.4 0.0069 1.5E-07 53.4 15.0 188 52-250 2-203 (228)
12 TIGR03472 HpnI hopanoid biosyn 97.3 0.02 4.3E-07 55.3 17.8 189 50-247 40-243 (373)
13 TIGR03469 HonB hopene-associat 97.2 0.028 6.1E-07 54.5 17.8 190 49-245 38-250 (384)
14 PRK11204 N-glycosyltransferase 97.1 0.063 1.4E-06 52.4 19.0 187 49-249 52-252 (420)
15 cd06439 CESA_like_1 CESA_like_ 96.8 0.028 6E-07 50.3 13.2 188 49-250 27-222 (251)
16 cd02520 Glucosylceramide_synth 96.8 0.062 1.3E-06 46.5 14.6 139 82-250 30-170 (196)
17 PRK14583 hmsR N-glycosyltransf 96.6 0.19 4E-06 49.8 18.3 186 50-250 74-274 (444)
18 cd02525 Succinoglycan_BP_ExoA 96.5 0.26 5.7E-06 43.5 17.1 191 53-252 2-203 (249)
19 cd04186 GT_2_like_c Subfamily 96.5 0.13 2.8E-06 42.2 13.7 89 136-251 71-159 (166)
20 cd04192 GT_2_like_e Subfamily 96.2 0.15 3.2E-06 44.5 13.6 156 83-244 29-195 (229)
21 PF01755 Glyco_transf_25: Glyc 96.2 0.1 2.3E-06 45.5 12.3 100 55-163 4-108 (200)
22 TIGR03111 glyc2_xrt_Gpos1 puta 96.2 0.18 3.8E-06 49.9 15.2 184 49-241 47-250 (439)
23 cd04196 GT_2_like_d Subfamily 95.9 0.4 8.7E-06 41.2 14.5 155 82-243 27-190 (214)
24 cd06421 CESA_CelA_like CESA_Ce 95.8 0.22 4.8E-06 43.7 12.8 114 131-247 76-201 (234)
25 cd02510 pp-GalNAc-T pp-GalNAc- 95.8 0.62 1.3E-05 43.2 16.1 188 56-249 3-217 (299)
26 PLN02726 dolichyl-phosphate be 95.7 1.1 2.4E-05 40.1 17.1 191 49-251 7-212 (243)
27 COG1215 Glycosyltransferases, 95.6 0.84 1.8E-05 44.4 17.0 194 50-252 53-260 (439)
28 cd06427 CESA_like_2 CESA_like_ 95.2 0.85 1.9E-05 40.7 14.4 119 129-250 74-205 (241)
29 cd04185 GT_2_like_b Subfamily 95.1 0.91 2E-05 39.0 14.0 137 83-246 27-163 (202)
30 PF13506 Glyco_transf_21: Glyc 95.0 0.069 1.5E-06 46.1 6.5 124 124-251 16-148 (175)
31 cd04184 GT2_RfbC_Mx_like Myxoc 95.0 1.8 3.9E-05 36.9 15.5 189 53-251 3-195 (202)
32 cd06532 Glyco_transf_25 Glycos 95.0 0.33 7.1E-06 39.5 10.1 112 55-224 2-119 (128)
33 PF04646 DUF604: Protein of un 94.9 0.038 8.1E-07 50.3 4.7 51 204-254 12-66 (255)
34 cd06420 GT2_Chondriotin_Pol_N 94.7 1.9 4.2E-05 36.0 14.6 100 130-246 70-169 (182)
35 PF00535 Glycos_transf_2: Glyc 94.6 0.49 1.1E-05 38.4 10.5 152 55-218 4-168 (169)
36 cd02526 GT2_RfbF_like RfbF is 94.6 1.6 3.5E-05 38.3 14.4 119 129-250 66-197 (237)
37 cd06433 GT_2_WfgS_like WfgS an 94.5 2.6 5.5E-05 35.5 16.2 120 129-250 65-187 (202)
38 cd06434 GT2_HAS Hyaluronan syn 94.2 1.6 3.4E-05 38.4 13.4 157 82-248 28-204 (235)
39 COG1216 Predicted glycosyltran 94.2 3.1 6.8E-05 38.8 16.0 188 51-247 3-210 (305)
40 TIGR03030 CelA cellulose synth 94.0 7.2 0.00016 41.2 19.9 123 122-249 212-350 (713)
41 cd06435 CESA_NdvC_like NdvC_li 93.9 1.7 3.7E-05 38.3 13.1 161 82-250 28-202 (236)
42 cd06442 DPM1_like DPM1_like re 93.9 3.5 7.6E-05 35.7 14.9 160 82-250 27-196 (224)
43 PTZ00260 dolichyl-phosphate be 93.8 6.5 0.00014 37.4 18.3 194 48-250 67-285 (333)
44 PRK14716 bacteriophage N4 adso 93.4 7.8 0.00017 39.3 18.2 191 49-249 64-281 (504)
45 cd06423 CESA_like CESA_like is 93.1 0.84 1.8E-05 36.9 9.1 146 68-219 10-170 (180)
46 PRK05454 glucosyltransferase M 92.9 6.5 0.00014 41.4 17.2 197 47-251 120-350 (691)
47 cd04195 GT2_AmsE_like GT2_AmsE 92.6 2.4 5.2E-05 36.2 11.6 115 130-249 71-193 (201)
48 PF13632 Glyco_trans_2_3: Glyc 91.9 0.63 1.4E-05 39.9 7.1 104 142-249 1-116 (193)
49 cd04187 DPM1_like_bac Bacteria 91.7 2.8 6.2E-05 35.2 11.0 133 81-221 28-165 (181)
50 cd04191 Glucan_BSP_ModH Glucan 90.6 6.5 0.00014 36.0 12.8 189 55-251 3-225 (254)
51 PF10111 Glyco_tranf_2_2: Glyc 89.8 13 0.00029 34.2 14.4 163 80-246 32-211 (281)
52 TIGR01556 rhamnosyltran L-rham 89.5 6.6 0.00014 35.8 12.0 117 129-247 64-191 (281)
53 PRK11498 bcsA cellulose syntha 89.0 26 0.00057 37.8 17.4 120 124-249 325-461 (852)
54 cd00761 Glyco_tranf_GTA_type G 88.2 10 0.00023 29.4 12.7 85 129-243 67-151 (156)
55 cd04179 DPM_DPG-synthase_like 87.7 4.9 0.00011 33.5 9.2 132 82-219 28-167 (185)
56 PRK10714 undecaprenyl phosphat 86.3 19 0.00041 34.1 13.3 131 81-220 37-174 (325)
57 PRK11234 nfrB bacteriophage N4 86.2 32 0.0007 36.5 15.9 192 47-247 59-276 (727)
58 cd04188 DPG_synthase DPG_synth 86.1 14 0.00029 31.9 11.4 161 81-250 29-201 (211)
59 cd06437 CESA_CaSu_A2 Cellulose 85.1 25 0.00055 30.7 14.3 111 130-247 78-203 (232)
60 cd02522 GT_2_like_a GT_2_like_ 84.5 25 0.00054 30.1 15.0 110 131-246 64-176 (221)
61 cd02514 GT13_GLCNAC-TI GT13_GL 81.1 37 0.00081 32.5 12.8 83 130-218 88-174 (334)
62 cd06913 beta3GnTL1_like Beta 1 80.1 24 0.00052 30.5 10.6 96 67-165 13-110 (219)
63 PRK10073 putative glycosyl tra 72.6 82 0.0018 29.8 12.6 105 51-164 6-110 (328)
64 COG2943 MdoH Membrane glycosyl 68.2 64 0.0014 33.0 10.8 113 48-165 141-266 (736)
65 MTH00260 ATP8 ATP synthase F0 62.8 11 0.00025 25.9 3.3 34 2-35 3-36 (53)
66 cd06438 EpsO_like EpsO protein 62.5 92 0.002 26.0 11.9 86 128-217 69-169 (183)
67 PRK10018 putative glycosyl tra 55.8 1.5E+02 0.0034 27.3 10.8 106 50-165 4-111 (279)
68 MTH00186 ATP8 ATP synthase F0 53.5 21 0.00045 24.2 3.4 32 2-33 3-34 (52)
69 cd04190 Chitin_synth_C C-termi 52.8 9.2 0.0002 34.3 2.0 106 139-247 73-210 (244)
70 PF13704 Glyco_tranf_2_4: Glyc 51.1 57 0.0012 24.4 6.0 69 83-156 19-88 (97)
71 MTH00147 ATP8 ATP synthase F0 48.3 24 0.00053 24.0 3.1 34 2-35 3-36 (51)
72 PRK15489 nfrB bacteriophage N4 48.0 3.7E+02 0.008 28.6 16.5 194 47-248 67-285 (703)
73 PHA01631 hypothetical protein 45.4 82 0.0018 27.1 6.4 93 106-221 38-133 (176)
74 PF03452 Anp1: Anp1; InterPro 45.4 1.9E+02 0.0041 26.9 9.4 95 79-176 53-176 (269)
75 PF03071 GNT-I: GNT-I family; 43.2 3.2E+02 0.0069 27.2 11.1 120 98-221 136-272 (434)
76 COG4092 Predicted glycosyltran 41.7 1.4E+02 0.003 28.0 7.6 176 63-242 18-217 (346)
77 PF12273 RCR: Chitin synthesis 41.3 20 0.00044 29.1 2.2 27 7-33 1-27 (130)
78 MTH00158 ATP8 ATP synthase F0 36.5 46 0.001 20.3 2.7 28 2-29 3-30 (32)
79 KOG2547|consensus 34.5 1.8E+02 0.0038 28.5 7.5 81 82-166 114-197 (431)
80 cd06436 GlcNAc-1-P_transferase 31.3 3.2E+02 0.0069 23.0 9.9 76 140-218 90-178 (191)
81 PF00895 ATP-synt_8: ATP synth 28.1 1.2E+02 0.0026 20.1 4.0 29 2-30 3-31 (54)
82 PF04666 Glyco_transf_54: N-Ac 27.1 5.1E+02 0.011 24.4 9.3 23 133-155 161-185 (297)
83 PRK13915 putative glucosyl-3-p 22.2 6.4E+02 0.014 23.5 11.2 120 49-175 29-153 (306)
84 PF09258 Glyco_transf_64: Glyc 21.9 1.3E+02 0.0028 27.3 4.2 106 139-248 75-189 (247)
85 cd02511 Beta4Glucosyltransfera 21.6 1.9E+02 0.004 25.3 5.1 37 129-165 61-97 (229)
86 PF00483 NTP_transferase: Nucl 21.5 3.2E+02 0.0069 23.9 6.6 94 126-220 85-192 (248)
87 PHA02688 ORF059 IMV protein VP 21.3 1.7E+02 0.0036 27.9 4.7 93 124-222 97-201 (323)
88 PF13712 Glyco_tranf_2_5: Glyc 20.7 1.2E+02 0.0027 26.8 3.7 35 128-162 43-77 (217)
89 PF09889 DUF2116: Uncharacteri 20.2 1.1E+02 0.0024 21.6 2.5 21 8-28 36-56 (59)
90 PLN02893 Cellulose synthase-li 20.0 4.2E+02 0.009 28.3 7.8 23 139-161 298-321 (734)
No 1
>KOG2287|consensus
Probab=100.00 E-value=2.9e-53 Score=404.30 Aligned_cols=243 Identities=28% Similarity=0.393 Sum_probs=217.4
Q ss_pred ccCCCCeeEEEEEECCCCCHHHHHHHHHHHhccc--cCCcEEEEEEecccCchh--hHHHHHHHHhcCCceeeCCccccC
Q psy10876 45 KNLKHSYFIVILILTSSKNYIRRKNIRDTWIKNI--EKYQVKYLFSIGNKENVV--DVKLKEEIRRYDDILLLNQVPDEY 120 (319)
Q Consensus 45 ~~~~~~~~lli~V~S~~~~~~~R~aIR~TW~~~~--~~~~v~~~FvlG~~~~~~--~~~l~~E~~~~~DIi~~~df~Dsy 120 (319)
.+....++++++|+|+++++++|++||+|||++. .+.+++++|++|.+.+.+ .+.+.+|++.|||||+ .||.|+|
T Consensus 89 ~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~-~df~Dty 167 (349)
T KOG2287|consen 89 CDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQ-VDFEDTY 167 (349)
T ss_pred hcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEE-Eecccch
Confidence 3444458999999999999999999999999996 478999999999998764 3899999999999996 5899999
Q ss_pred CchhHHHHHHHHHHHhcc-CeeEEEEecCCeEEehHHHHHHHhhc-CCCCcccEEEEecCCCceecc--Ccccccc-ccc
Q psy10876 121 SSLSQKVLHSFKYIYEHF-DFQYLLKCDDDTFVRVPNIIHELENK-FHYEKKLYWGFFDGRARVRRA--GKWKEKN-WFL 195 (319)
Q Consensus 121 ~nlt~K~~~~l~w~~~~~-~~~~vlk~DDD~fVn~~~L~~~L~~~-~~~~~~~y~G~~~~~~~~~r~--~k~~~~~-~~~ 195 (319)
.|+|+|++++++|+.++| +++|++|+|||+|||+++|+++|... ++ .+.+|+|++..+..|.|+ +|||+|+ .|+
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~-~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~ 246 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDP-SSDLYYGRVIQNAPPIRDKTSKWYVPESEYP 246 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCC-CcceEEEeecccCCCCCCCCCCCccCHHHCC
Confidence 999999999999999999 89999999999999999999999999 66 788999999988788775 8999995 799
Q ss_pred cCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhC-CCcEeecCCccccC-CCCCccc-ceEEEeHH-
Q psy10876 196 CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSAL-DITRYHDVRFDTEF-QSRGCNN-SYLIVHKQ- 271 (319)
Q Consensus 196 ~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~l-gI~~~~~~~f~~~~-~~~~C~~-~~i~~H~~- 271 (319)
.+.|||||+|+|||+|+++|++|++++.+.+.+++|||++|+|+++. ||.+.++++|.... ..+.|.+ ..+++|..
T Consensus 247 ~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 326 (349)
T KOG2287|consen 247 CSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCYRDLLAVHRLS 326 (349)
T ss_pred CCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcccceEEEecCC
Confidence 99999999999999999999999999999999999999999999987 99999999865433 2367776 48899987
Q ss_pred --HHHHHHHHhhc-CCCCCCCcc
Q psy10876 272 --NMHQLYNNLML-SNQARLCFH 291 (319)
Q Consensus 272 --~~~~~W~~~~~-~~~~~~C~~ 291 (319)
+|..+|+.++. . +..|..
T Consensus 327 p~e~~~~w~~~~~~~--~~~c~~ 347 (349)
T KOG2287|consen 327 PNEMIYLWKKLKDLA--NLKCKN 347 (349)
T ss_pred HHHHHHHHHHhhccc--cccccc
Confidence 99999999997 4 566654
No 2
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.2e-52 Score=414.66 Aligned_cols=237 Identities=27% Similarity=0.456 Sum_probs=204.7
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhccc--cCCcEEEEEEecccCchhh-HHHHHHHHhcCCceeeCCccccCCchh
Q psy10876 48 KHSYFIVILILTSSKNYIRRKNIRDTWIKNI--EKYQVKYLFSIGNKENVVD-VKLKEEIRRYDDILLLNQVPDEYSSLS 124 (319)
Q Consensus 48 ~~~~~lli~V~S~~~~~~~R~aIR~TW~~~~--~~~~v~~~FvlG~~~~~~~-~~l~~E~~~~~DIi~~~df~Dsy~nlt 124 (319)
.++++|+|+|+|+|+|+++|+|||+|||+.. .+..++++|++|.+.+... ..|++|+++|||||+ .||.|+|+|+|
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq-~dF~DsY~NLT 460 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQL-MPFVDYYSLIT 460 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEE-EeeechhhhhH
Confidence 4578999999999999999999999999864 3456899999999887655 889999999999996 58999999999
Q ss_pred HHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceecc--Cccccc-cccccCCCCC
Q psy10876 125 QKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRA--GKWKEK-NWFLCDRYLP 201 (319)
Q Consensus 125 ~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~--~k~~~~-~~~~~~~yP~ 201 (319)
+|+++++.|+...++++|+||+|||+|||+++|+++|+.... .+.+|+|++..+..|.|+ +|||++ ++|+.+.|||
T Consensus 461 lKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~-~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPp 539 (636)
T PLN03133 461 WKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNV-SHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPP 539 (636)
T ss_pred HHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCC-CCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCC
Confidence 999999999875449999999999999999999999987665 567999999988889886 899998 5899999999
Q ss_pred cccCCceeecHHHHHHHHHhc--CcCCCCCcChHHHHHHHHh---CCCcEeecCCccccCCCCCcccceEEEeHH---HH
Q psy10876 202 YALGGGYVLSHLLVKFISENS--HMLSSYISEDVSVGVWLSA---LDITRYHDVRFDTEFQSRGCNNSYLIVHKQ---NM 273 (319)
Q Consensus 202 y~~G~gYvlS~~~~~~L~~~~--~~~~~~~~EDv~vG~~l~~---lgI~~~~~~~f~~~~~~~~C~~~~i~~H~~---~~ 273 (319)
||+|+|||||+|+|+.|+.++ ..++.+++||||+|+|+++ +|+.+.+...+.. ..++|...++++|++ +|
T Consensus 540 YasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~--~~~~C~~~~i~~H~~sP~eM 617 (636)
T PLN03133 540 WAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRI--YNEGCKDGYVVAHYQSPREM 617 (636)
T ss_pred CCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcc--cCCcCCCCeEEEecCCHHHH
Confidence 999999999999999999875 4789999999999999864 5777655443221 246898779999988 99
Q ss_pred HHHHHHhhcCCCCCCC
Q psy10876 274 HQLYNNLMLSNQARLC 289 (319)
Q Consensus 274 ~~~W~~~~~~~~~~~C 289 (319)
.++|+.++++. +..|
T Consensus 618 ~~lW~~l~~~~-~~~C 632 (636)
T PLN03133 618 LCLWQKLQEGK-RATC 632 (636)
T ss_pred HHHHHHHhccC-CCCc
Confidence 99999998863 2444
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.6e-48 Score=369.48 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=183.4
Q ss_pred cCCCCeeEEEEEECCCCCHHHHHHHHHHHhccc-------cCCcEEEEEEecccCch--hh-HHHHHHHHhcCCceeeCC
Q psy10876 46 NLKHSYFIVILILTSSKNYIRRKNIRDTWIKNI-------EKYQVKYLFSIGNKENV--VD-VKLKEEIRRYDDILLLNQ 115 (319)
Q Consensus 46 ~~~~~~~lli~V~S~~~~~~~R~aIR~TW~~~~-------~~~~v~~~FvlG~~~~~--~~-~~l~~E~~~~~DIi~~~d 115 (319)
..+++++++|+|+|+++|++||++||+|||+.. ....++++|++|.+.+. .. .+|++|+++|||||++ |
T Consensus 134 ~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-D 212 (408)
T PLN03193 134 SGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-D 212 (408)
T ss_pred CCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-e
Confidence 345668999999999999999999999999863 13569999999998742 33 7899999999999965 7
Q ss_pred ccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceecc---Ccccccc
Q psy10876 116 VPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRA---GKWKEKN 192 (319)
Q Consensus 116 f~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~---~k~~~~~ 192 (319)
|.|+|.|||.||+++|+|+.++|+++|++|+|||+|||+++|+.+|..... ++++|+|++..+ |.|+ .||+.++
T Consensus 213 fvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~-~~rlYiG~m~~g--Pvr~~~~~ky~epe 289 (408)
T PLN03193 213 HVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRK-KPRVYIGCMKSG--PVLSQKGVRYHEPE 289 (408)
T ss_pred cccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCC-CCCEEEEecccC--ccccCCCCcCcCcc
Confidence 999999999999999999999999999999999999999999999987654 457999998754 4442 4567776
Q ss_pred cc----ccCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecCCccccCCCCCcc
Q psy10876 193 WF----LCDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVRFDTEFQSRGCN 262 (319)
Q Consensus 193 ~~----~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~~f~~~~~~~~C~ 262 (319)
+| +.+.|||||+|+|||||+|+++.|+.+...++.+++|||++|.|+..++|+.+|+++|-.. ....|.
T Consensus 290 ~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~-~~~~C~ 362 (408)
T PLN03193 290 YWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCG-TPPDCE 362 (408)
T ss_pred cccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhhhhHhccCCceeeecccccCC-CCcccc
Confidence 54 5689999999999999999999999888888999999999999999999999999999754 223454
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=5.5e-47 Score=333.99 Aligned_cols=184 Identities=33% Similarity=0.482 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhccc--cCCcEEEEEEecccC--chhh-HHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhcc-
Q psy10876 65 IRRKNIRDTWIKNI--EKYQVKYLFSIGNKE--NVVD-VKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHF- 138 (319)
Q Consensus 65 ~~R~aIR~TW~~~~--~~~~v~~~FvlG~~~--~~~~-~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~- 138 (319)
+||++||+|||+.. .+.+++++|++|.++ +... +.|++|+++|+|||+ .||.|+|.|+|+|++++++|+.++|
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~-~d~~D~y~nlt~K~~~~~~w~~~~c~ 79 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQ-GDFVDSYRNLTLKTLAGLKWASKHCP 79 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEe-eecccccchhhHHHHHHHHHHHhhCC
Confidence 58999999999986 568999999999998 3333 679999999999996 5899999999999999999999999
Q ss_pred CeeEEEEecCCeEEehHHHHHHHhhc--CCCCcccEEEEecCCCceecc--Cccccc-cccccCCCCCcccCCceeecHH
Q psy10876 139 DFQYLLKCDDDTFVRVPNIIHELENK--FHYEKKLYWGFFDGRARVRRA--GKWKEK-NWFLCDRYLPYALGGGYVLSHL 213 (319)
Q Consensus 139 ~~~~vlk~DDD~fVn~~~L~~~L~~~--~~~~~~~y~G~~~~~~~~~r~--~k~~~~-~~~~~~~yP~y~~G~gYvlS~~ 213 (319)
+++|++|+|||+|||+++|.++|... .+ .++.+.|....+.+|.|+ +||+++ +.|+.+.|||||+|+||+||++
T Consensus 80 ~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~-~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~ 158 (195)
T PF01762_consen 80 NAKYVLKVDDDVFVNPDRLVSFLKSLKQDP-SKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSD 158 (195)
T ss_pred chhheeecCcEEEEehHHhhhhhhhcccCc-cccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHH
Confidence 69999999999999999999999998 33 456777887766677765 899998 4799999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecC
Q psy10876 214 LVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 214 ~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
+|+.|+.++..++.+++|||++|+|+.++||+++|+|
T Consensus 159 ~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 159 VVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999875
No 5
>KOG2288|consensus
Probab=100.00 E-value=4e-41 Score=297.58 Aligned_cols=250 Identities=31% Similarity=0.539 Sum_probs=217.4
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhccc-------cCCcEEEEEEecccCchhh--HHHHHHHHhcCCceeeCCccc
Q psy10876 48 KHSYFIVILILTSSKNYIRRKNIRDTWIKNI-------EKYQVKYLFSIGNKENVVD--VKLKEEIRRYDDILLLNQVPD 118 (319)
Q Consensus 48 ~~~~~lli~V~S~~~~~~~R~aIR~TW~~~~-------~~~~v~~~FvlG~~~~~~~--~~l~~E~~~~~DIi~~~df~D 118 (319)
.++++++|+|.|++++.+||+++|+||.... ....+.++|++|....... .+|++|.++|+|.+.+.+.+|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 6789999999999999999999999999872 4678899999999544444 999999999999998866999
Q ss_pred cCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceec-cCccccccccccC
Q psy10876 119 EYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRR-AGKWKEKNWFLCD 197 (319)
Q Consensus 119 sy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r-~~k~~~~~~~~~~ 197 (319)
+|.+|+.||+.+|.++..+++++|++|+|||+|||++.|...|..... ++.+|+|++.+++.+.+ ++||++|+|..++
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~-~pr~YiGcmksg~v~~~~~~kw~EpeWkfg~ 166 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERS-HPRLYIGCMKSGPVLTQPGGKWYEPEWKFGD 166 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhcc-CCceEEEEecCCccccCCCCcccChhhhcCc
Confidence 999999999999999999999999999999999999999999998775 67899999988776665 6999999987776
Q ss_pred C--CCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecCCccccCCCCCcccceEEEeHH--HH
Q psy10876 198 R--YLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVRFDTEFQSRGCNNSYLIVHKQ--NM 273 (319)
Q Consensus 198 ~--yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~~f~~~~~~~~C~~~~i~~H~~--~~ 273 (319)
. |.+|+.|+||+||++++.-|..+...+..+..|||.+|.|+..++|+.+|++++ |+... |.. .+
T Consensus 167 ~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rl--------C~~~~---~~~~~~~ 235 (274)
T KOG2288|consen 167 NGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRL--------CCSTP---KALAGMV 235 (274)
T ss_pred ccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcc--------cccch---hhhccce
Confidence 6 999999999999999999999988888999999999999999999999998844 43323 222 33
Q ss_pred HHHHHHhhcCCCCCCCccccccCcceeeecccCCccccc
Q psy10876 274 HQLYNNLMLSNQARLCFHEYKERNSYEYNWKVAPSQCCI 312 (319)
Q Consensus 274 ~~~W~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
..+|..... +..|..+.+-..-|.|||.--|++||-
T Consensus 236 ~~~~~~~kc---sglC~~~~rm~~~h~~~~~~~~~~~~~ 271 (274)
T KOG2288|consen 236 CAASFDWKC---SGLCKSEDRMLEVHKYDWEGKPATCCS 271 (274)
T ss_pred eeeeecccc---cccCchHHHHhHHHHhhccCCCcccCc
Confidence 334444444 589999999999999999999999994
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=3.7e-33 Score=261.23 Aligned_cols=222 Identities=23% Similarity=0.294 Sum_probs=176.5
Q ss_pred cCCCCeeEEEEEECCCCC--HHHHHHHHHHHhccc--------cCCcEEEEEEecccCch--hh-HHHHHHHHhcCCcee
Q psy10876 46 NLKHSYFIVILILTSSKN--YIRRKNIRDTWIKNI--------EKYQVKYLFSIGNKENV--VD-VKLKEEIRRYDDILL 112 (319)
Q Consensus 46 ~~~~~~~lli~V~S~~~~--~~~R~aIR~TW~~~~--------~~~~v~~~FvlG~~~~~--~~-~~l~~E~~~~~DIi~ 112 (319)
-++++..++++|+|..++ +.||+++|+||.+-. -...+-++|++|.+++. +. +++++|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 457789999999999988 999999999999864 14567788999999887 33 999999999999996
Q ss_pred eCCc------------------cccCCchhHHHHHHHHHHHhcc-CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEE
Q psy10876 113 LNQV------------------PDEYSSLSQKVLHSFKYIYEHF-DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYW 173 (319)
Q Consensus 113 ~~df------------------~Dsy~nlt~K~~~~l~w~~~~~-~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~ 173 (319)
+ +| .|++.|+|+||+++++|+...| +++|++|+|||+|||++++++.|+..+ ++.+|+
T Consensus 155 l-pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~p--rr~LY~ 231 (382)
T PTZ00210 155 L-PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMP--RHGLYM 231 (382)
T ss_pred E-ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCC--CCceEE
Confidence 5 69 7777889999999999999999 999999999999999999999997765 466999
Q ss_pred EEecCCCceeccCccccccccccCCCCCcccCCceeecHHHHHHHHHhcCc--C---------------CCCCcChHHHH
Q psy10876 174 GFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLVKFISENSHM--L---------------SSYISEDVSVG 236 (319)
Q Consensus 174 G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~--~---------------~~~~~EDv~vG 236 (319)
|++.....|.|++ +||||+|+||+||+|+|+.|++.... + -.+..||+.+|
T Consensus 232 G~v~~~~~p~Rd~------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG 299 (382)
T PTZ00210 232 GRYNYYNRIWRRN------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVG 299 (382)
T ss_pred EeeCCCCccccCC------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHH
Confidence 9988766666642 59999999999999999999987431 1 13568999999
Q ss_pred HHHH-hCCCcEe-----ecCCccccCCCCCcc----cceEEEeHH---HHHHHHHHhhcC
Q psy10876 237 VWLS-ALDITRY-----HDVRFDTEFQSRGCN----NSYLIVHKQ---NMHQLYNNLMLS 283 (319)
Q Consensus 237 ~~l~-~lgI~~~-----~~~~f~~~~~~~~C~----~~~i~~H~~---~~~~~W~~~~~~ 283 (319)
.+++ +++.++. ..-+|+... ...|. .+.+++|+. +...+.+.+++.
T Consensus 300 ~vLr~~~k~~~l~~V~~~~c~Fhd~~-~~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~ 358 (382)
T PTZ00210 300 MILREKVVYRNLISVEMGRCHFHNAG-KFGVRKSVRNMSVVIHHIQEADYEMLMDYFPEG 358 (382)
T ss_pred HHHHHhcCcCceeeeccccccceecC-CCCCccccccceEEEEecCHHHHHHHHHHhcCC
Confidence 9995 5443321 224565432 23342 468899998 555566666653
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.88 E-value=9.8e-23 Score=186.45 Aligned_cols=208 Identities=22% Similarity=0.248 Sum_probs=107.8
Q ss_pred eeEEEEEECCCCCHHHHH-HHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHH
Q psy10876 51 YFIVILILTSSKNYIRRK-NIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLH 129 (319)
Q Consensus 51 ~~lli~V~S~~~~~~~R~-aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~ 129 (319)
-+|+|+|+|++++++.|. +|++||++.... ..|+....++ ..+..+ .-.+++ .++..+++...+++.++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~----~~~ifsd~~d---~~l~~~--~~~~l~-~~~~~~~~~~~~~~~~~ 75 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK----QTFIFSDAED---PSLPTV--TGVHLV-NPNCDAGHCRKTLSCKM 75 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG----GEEEEESS-----HHHHHH--HGGGEE-E-------------HHH
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC----ceEEecCccc---cccccc--cccccc-cCCCcchhhHHHHHHHH
Confidence 468999999999998888 999999999522 2343232222 223222 223444 45555655555666666
Q ss_pred HHHHHHhcc-CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccCCCCCcc-cCCc
Q psy10876 130 SFKYIYEHF-DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYLPYA-LGGG 207 (319)
Q Consensus 130 ~l~w~~~~~-~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~-~G~g 207 (319)
++.+-...- +++|++++|||+||++++|+++|...++ .+++|+|+...........+. ....-....| .|+ +|+|
T Consensus 76 ~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~-~~~~yiG~~~~~~~~~~~~~~-~~~~~~~~~~-~f~~GGaG 152 (252)
T PF02434_consen 76 AYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDP-SEPIYIGRPSGDRPIEIIHRF-NPNKSKDSGF-WFATGGAG 152 (252)
T ss_dssp HHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-T-TS--EEE-EE------------------------EE-GGG-
T ss_pred HHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCC-ccCEEeeeeccCccceeeccc-cccccCcCce-EeeCCCee
Confidence 655543333 7899999999999999999999999998 789999997643221110000 0000001112 254 7899
Q ss_pred eeecHHHHHHHHHhcC--cC-CC----CCcChHHHHHHHHh-CCCcEeecCCccccCCC--C-----CcccceEEEeHH
Q psy10876 208 YVLSHLLVKFISENSH--ML-SS----YISEDVSVGVWLSA-LDITRYHDVRFDTEFQS--R-----GCNNSYLIVHKQ 271 (319)
Q Consensus 208 YvlS~~~~~~L~~~~~--~~-~~----~~~EDv~vG~~l~~-lgI~~~~~~~f~~~~~~--~-----~C~~~~i~~H~~ 271 (319)
|+||+.++++|..... .+ .. -..||+.+|.|+.. +||+++|.+.||..... + -+....++.|..
T Consensus 153 ~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~q~~~s~~~~ 231 (252)
T PF02434_consen 153 YVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHRQVPISYHKF 231 (252)
T ss_dssp EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-GGG--TTTGGG-SEEE-EEE
T ss_pred HHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcccccCCHHHhccCCCeecCCC
Confidence 9999999999955322 22 22 24899999999998 89999999999876532 1 233335666654
No 8
>KOG2246|consensus
Probab=99.83 E-value=4.6e-20 Score=176.11 Aligned_cols=169 Identities=29% Similarity=0.498 Sum_probs=133.8
Q ss_pred CCCCeeEEEEEECCCCCHHHHH-HHHHHHhccccCCcEEEEEEe---cccCchhhHHHHHHHHhcCCceeeCCccccCCc
Q psy10876 47 LKHSYFIVILILTSSKNYIRRK-NIRDTWIKNIEKYQVKYLFSI---GNKENVVDVKLKEEIRRYDDILLLNQVPDEYSS 122 (319)
Q Consensus 47 ~~~~~~lli~V~S~~~~~~~R~-aIR~TW~~~~~~~~v~~~Fvl---G~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~n 122 (319)
...+.+++|.|+|++.+.+.|. ++-+||++. ++ +..|+. ++. ...++-|. . +..|+|++
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~r-c~---~~~f~s~~~s~~-----------~~~f~~v~-~-~~~~g~~~ 149 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKR-CD---KGIFFSPTLSKD-----------DSRFPTVY-Y-NLPDGYRS 149 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccc-cC---cceecCccCCCC-----------CCcCceee-c-cCCcchHH
Confidence 4567999999999999999888 999999998 44 344555 332 12344443 4 57999999
Q ss_pred hhHHHHHHHHHHHhcc--CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccCCCC
Q psy10876 123 LSQKVLHSFKYIYEHF--DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYL 200 (319)
Q Consensus 123 lt~K~~~~l~w~~~~~--~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP 200 (319)
+..|+..+++++.++. +++|++|+|||||+.++||..+|...++ ++++|+|+..... -. ..|
T Consensus 150 ~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp-~~p~YiG~~~~~~---~~-----------~~y- 213 (364)
T KOG2246|consen 150 LWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDP-EKPVYLGYRSKSY---FQ-----------NGY- 213 (364)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCC-CCcEEeccccccc---cc-----------ccc-
Confidence 9999999999999777 8999999999999999999999999999 8899999854321 10 001
Q ss_pred CcccCCceeecHHHHHHHHHhcC----cCCC-C--CcChHHHHHHHHhCCCcEeec
Q psy10876 201 PYALGGGYVLSHLLVKFISENSH----MLSS-Y--ISEDVSVGVWLSALDITRYHD 249 (319)
Q Consensus 201 ~y~~G~gYvlS~~~~~~L~~~~~----~~~~-~--~~EDv~vG~~l~~lgI~~~~~ 249 (319)
--+|+||++|+++++.+++... .++. . ..||..||.|++++||.+.+.
T Consensus 214 -~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 214 -SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred -ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 2489999999999998877632 2332 3 399999999999999998876
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.56 E-value=1.3e-13 Score=134.58 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=116.9
Q ss_pred CeeEEEEEECCCCCHHHH-HHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCcccc----CC---
Q psy10876 50 SYFIVILILTSSKNYIRR-KNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDE----YS--- 121 (319)
Q Consensus 50 ~~~lli~V~S~~~~~~~R-~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Ds----y~--- 121 (319)
--.|+++|.++.+..+.| ..|+.+|...... ..+|+.....+... ...-.-|. ++ .|+ |.
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~r---g~v~ld~~~~~~~~------~~~~P~i~-is--~d~s~f~y~~~~ 188 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQMR---GHVWLEEQVSPEEG------DDSLPPIM-VS--EDTSRFRYTNPT 188 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCcccce---eEEEecccCCCCCC------cCCCCCEE-eC--CCcccccccCCC
Confidence 356899999998888666 5999999975311 34565544332110 01111222 21 111 22
Q ss_pred chhHH--HH-HHHHHHHhcc-CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccC
Q psy10876 122 SLSQK--VL-HSFKYIYEHF-DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCD 197 (319)
Q Consensus 122 nlt~K--~~-~~l~w~~~~~-~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~ 197 (319)
+.... +. +..+-+.... +++|++++|||||+.++||++.|..+++ .++.|+|......... .. + .
T Consensus 189 Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDp-tkp~YIGs~Se~~~qn--~~------f-~- 257 (537)
T PLN03153 189 GHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDP-SEMVYVGGPSESHSAN--SY------F-S- 257 (537)
T ss_pred CcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCC-CCCEEecccccccccc--cc------c-c-
Confidence 22221 11 2222233333 8999999999999999999999999998 8899999865332100 00 0 0
Q ss_pred CCCCc-ccCCceeecHHHHHHHHHhcCcC----CCCCcChHHHHHHHHhCCCcEeecCCccc
Q psy10876 198 RYLPY-ALGGGYVLSHLLVKFISENSHML----SSYISEDVSVGVWLSALDITRYHDVRFDT 254 (319)
Q Consensus 198 ~yP~y-~~G~gYvlS~~~~~~L~~~~~~~----~~~~~EDv~vG~~l~~lgI~~~~~~~f~~ 254 (319)
| .| -||+||+||+.++++|.+....+ +....+|.-+|.|+.++||.+++.++||.
T Consensus 258 -~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ 317 (537)
T PLN03153 258 -H-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQ 317 (537)
T ss_pred -c-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccc
Confidence 1 13 48999999999999988763222 22356888999999999999999999985
No 10
>KOG3708|consensus
Probab=98.64 E-value=4.6e-08 Score=94.94 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=110.5
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhh-HHHHHHHHhcCCceeeCCccccCCchhHHHH
Q psy10876 50 SYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVD-VKLKEEIRRYDDILLLNQVPDEYSSLSQKVL 128 (319)
Q Consensus 50 ~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~-~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~ 128 (319)
+-+++++|+|. ..---+|.+|=|.+. + ++.|+.+.+..... +.+. ++ .+.|... .....
T Consensus 25 RErl~~aVmte---~tlA~a~NrT~ahhv-p---rv~~F~~~~~i~~~~a~~~--------~v---s~~d~r~--~~~~s 84 (681)
T KOG3708|consen 25 RERLMAAVMTE---STLALAINRTLAHHV-P---RVHLFADSSRIDNDLAQLT--------NV---SPYDLRG--QKTHS 84 (681)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhc-c---eeEEeeccccccccHhhcc--------cc---CccccCc--cccHH
Confidence 34567888882 255568999999883 2 66677877654332 2221 22 2455433 34456
Q ss_pred HHHHHHHhcc--CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccCCCCCcc-cC
Q psy10876 129 HSFKYIYEHF--DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYLPYA-LG 205 (319)
Q Consensus 129 ~~l~w~~~~~--~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~-~G 205 (319)
+.++++.++. +++||+.+-||||||...|++++...+. ..++|+|.-...+ ++ =| .|
T Consensus 85 ~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsi-n~dlymGEe~~~g---------------s~----rC~l~ 144 (681)
T KOG3708|consen 85 MVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSI-NEDLYMGEEAEDG---------------SG----RCRLD 144 (681)
T ss_pred HHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhccc-ccccccchhhhCc---------------cC----ccccc
Confidence 7788888887 8999999999999999999999999987 7899999532110 01 15 58
Q ss_pred CceeecHHHHHHHHHhcCcCCC---CCcChHHHHHHHHhC-CCcE
Q psy10876 206 GGYVLSHLLVKFISENSHMLSS---YISEDVSVGVWLSAL-DITR 246 (319)
Q Consensus 206 ~gYvlS~~~~~~L~~~~~~~~~---~~~EDv~vG~~l~~l-gI~~ 246 (319)
.||++|+.++.+|-.+-..+.- -.=+|+.+|.|+... ||..
T Consensus 145 ~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C 189 (681)
T KOG3708|consen 145 TGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGC 189 (681)
T ss_pred cceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCc
Confidence 9999999999999887543332 234689999999743 6653
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.42 E-value=0.0069 Score=53.41 Aligned_cols=188 Identities=12% Similarity=0.076 Sum_probs=92.1
Q ss_pred eEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCc--eeeCCccccCCchh--HHH
Q psy10876 52 FIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDI--LLLNQVPDEYSSLS--QKV 127 (319)
Q Consensus 52 ~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DI--i~~~df~Dsy~nlt--~K~ 127 (319)
.+.|+|.+.-+...-++.++.--... . ..++++++...+.++..+.+++-.+.+++. ..+. .+ .|.. .|.
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~-~-~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~---~~-~~~g~~~k~ 75 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD-Y-PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIR---RP-RNPGPGGKA 75 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH-H-HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE--------HHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC-C-CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEee---cC-CCCCcchHH
Confidence 46677776655555566666655443 2 346666655444333225566555666653 2121 11 2222 233
Q ss_pred HHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhc-CCCCcccEEEEecCCC-c-e-eccCccccccc----cc-cCC
Q psy10876 128 LHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENK-FHYEKKLYWGFFDGRA-R-V-RRAGKWKEKNW----FL-CDR 198 (319)
Q Consensus 128 ~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~-~~~~~~~y~G~~~~~~-~-~-~r~~k~~~~~~----~~-~~~ 198 (319)
.++.++.+..+.+|++.+|||+.+.++-|..++... .+ .-....|...... . . .+-..+....+ .. ...
T Consensus 76 -~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (228)
T PF13641_consen 76 -RALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADP-GVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRA 153 (228)
T ss_dssp -HHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBS-S--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B-
T ss_pred -HHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhC-CCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhcc
Confidence 355666667789999999999999999988888776 33 3334444432111 0 0 00011100000 00 111
Q ss_pred CC-CcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecC
Q psy10876 199 YL-PYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 199 yP-~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
+. .++.|++.++.+++++++..-.. ....||..++.-+.+.|.+....+
T Consensus 154 ~~~~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 154 LGVAFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIVYAP 203 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EEEEE
T ss_pred cceeeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEEEEC
Confidence 11 34679999999999999853222 455699999999988887765443
No 12
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.30 E-value=0.02 Score=55.32 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=105.0
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCC--ceeeCCccccCCchhHHH
Q psy10876 50 SYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDD--ILLLNQVPDEYSSLSQKV 127 (319)
Q Consensus 50 ~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~D--Ii~~~df~Dsy~nlt~K~ 127 (319)
.+.+-|+|++.-+...-.+.++. ..++ .....+++++.+.+.+.+.+.+++-.+.|++ |..+.+ +.-.....|.
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~S-l~~q-~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~--~~~~G~~~K~ 115 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLAS-FCRQ-DYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVID--ARRHGPNRKV 115 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHH-HHhc-CCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEEC--CCCCCCChHH
Confidence 44566667666554444555543 3333 2234788887766655433333333456776 322211 1112223566
Q ss_pred HHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccc------ccc-cccc----
Q psy10876 128 LHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWK------EKN-WFLC---- 196 (319)
Q Consensus 128 ~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~------~~~-~~~~---- 196 (319)
-...+ +.+..+.++++.+|+|+.+.++-|.+.+......+-.+..|..... +.. +-|. ... .++.
T Consensus 116 ~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~~~~~ 191 (373)
T TIGR03472 116 SNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGR--PVP-GFWSRLGAMGINHNFLPSVMVA 191 (373)
T ss_pred HHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCC--CCC-CHHHHHHHHHhhhhhhHHHHHH
Confidence 55444 4556689999999999999999998888776421222333321111 111 1010 000 1110
Q ss_pred --CCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEe
Q psy10876 197 --DRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRY 247 (319)
Q Consensus 197 --~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~ 247 (319)
..-+.++.|+++++.+++.+++---.. ....-.||..+|.-+.+.|.+..
T Consensus 192 ~~~~~~~~~~G~~~a~RR~~l~~iGGf~~-~~~~~~ED~~l~~~i~~~G~~v~ 243 (373)
T TIGR03472 192 RALGRARFCFGATMALRRATLEAIGGLAA-LAHHLADDYWLGELVRALGLRVV 243 (373)
T ss_pred HhccCCccccChhhheeHHHHHHcCChHH-hcccchHHHHHHHHHHHcCCeEE
Confidence 011345889999999999998753221 12233699999999998886654
No 13
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=97.21 E-value=0.028 Score=54.55 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=99.6
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcC---CceeeCCccccCCchhH
Q psy10876 49 HSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYD---DILLLNQVPDEYSSLSQ 125 (319)
Q Consensus 49 ~~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~---DIi~~~df~Dsy~nlt~ 125 (319)
..+.+-|+|.+.-+...-.+.++.--.+. .....+++++-+.+.|.+.+.+++-.+++. .+..+. ..+.-.+-.-
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~-yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~-~~~~~~g~~G 115 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQD-YPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVS-GQPLPPGWSG 115 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCC-CCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEec-CCCCCCCCcc
Confidence 44556666666544433344444433332 122467777777666554333332233443 344332 1221122233
Q ss_pred HH---HHHHHHHHhcc-CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccc---cc-------
Q psy10876 126 KV---LHSFKYIYEHF-DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWK---EK------- 191 (319)
Q Consensus 126 K~---~~~l~w~~~~~-~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~---~~------- 191 (319)
|. -.+++.+.+.. +.+|++.+|+|+.+.++.|.+.++........+..|...... .+-|. .+
T Consensus 116 k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~----~~~~~~~~~~~~~~~~~ 191 (384)
T TIGR03469 116 KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC----ESFWEKLLIPAFVFFFQ 191 (384)
T ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC----CCHHHHHHHHHHHHHHH
Confidence 42 33445444333 389999999999999988888887654312233333221100 01000 00
Q ss_pred -----cccc-cCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCc
Q psy10876 192 -----NWFL-CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDIT 245 (319)
Q Consensus 192 -----~~~~-~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~ 245 (319)
.+.. ......++.|++.++++++.+++---.. ......||+.++.-+++.|.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~-~~~~~~ED~~L~~r~~~~G~~ 250 (384)
T TIGR03469 192 KLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAA-IRGALIDDCTLAAAVKRSGGR 250 (384)
T ss_pred HhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHH-HhhCcccHHHHHHHHHHcCCc
Confidence 0000 0111234679999999999998732211 122347999999999888743
No 14
>PRK11204 N-glycosyltransferase; Provisional
Probab=97.08 E-value=0.063 Score=52.43 Aligned_cols=187 Identities=12% Similarity=0.053 Sum_probs=100.7
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHH
Q psy10876 49 HSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVL 128 (319)
Q Consensus 49 ~~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~ 128 (319)
+.+.+-|+|.+.-+...-++.++.--.+. ....+++.+-..+.+.+.+.+++..+++..+..+. ...|.. | -
T Consensus 52 ~~p~vsViIp~yne~~~i~~~l~sl~~q~--yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~----~~~n~G-k-a 123 (420)
T PRK11204 52 EYPGVSILVPCYNEGENVEETISHLLALR--YPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIH----LAENQG-K-A 123 (420)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHhCC--CCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEE----cCCCCC-H-H
Confidence 44567777777655433344343322221 22455554444443333355555556666665332 122322 3 3
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccc---cccc---------c
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEK---NWFL---------C 196 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~---~~~~---------~ 196 (319)
.+++...+.++.+|++..|+|+.+..+.|.+.++.... +++ .|-+.+.........+... ..|. .
T Consensus 124 ~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~-~~~--v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (420)
T PRK11204 124 NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLH-NPR--VGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQ 200 (420)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHh-CCC--eEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHH
Confidence 45666666778999999999999999988888877632 122 1222222111111100000 0000 0
Q ss_pred CCC--CCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeec
Q psy10876 197 DRY--LPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHD 249 (319)
Q Consensus 197 ~~y--P~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~ 249 (319)
..+ +...+|++.++.+++++++--- -+....||+.++.-+.+.|.+..-.
T Consensus 201 ~~~~~~~~~~G~~~~~rr~~l~~vgg~---~~~~~~ED~~l~~rl~~~G~~i~~~ 252 (420)
T PRK11204 201 RVYGRVFTVSGVITAFRKSALHEVGYW---STDMITEDIDISWKLQLRGWDIRYE 252 (420)
T ss_pred HHhCCceEecceeeeeeHHHHHHhCCC---CCCcccchHHHHHHHHHcCCeEEec
Confidence 111 1235789999999999886321 1233579999998888887665433
No 15
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=96.85 E-value=0.028 Score=50.35 Aligned_cols=188 Identities=9% Similarity=0.006 Sum_probs=97.4
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHH
Q psy10876 49 HSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVL 128 (319)
Q Consensus 49 ~~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~ 128 (319)
..+.+-|+|.+.-....-...++.-..+......++++++...+.+...+.+.+..+. .+..+. .+ .|. -| -
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~v~~i~--~~--~~~-g~-~ 98 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK--GVKLLR--FP--ERR-GK-A 98 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC--cEEEEE--cC--CCC-Ch-H
Confidence 3445667777765554445566665554422223677666655544332333322222 233222 11 121 12 2
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCce--eccC--cccccc---ccc-cCCCC
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARV--RRAG--KWKEKN---WFL-CDRYL 200 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~--~r~~--k~~~~~---~~~-~~~yP 200 (319)
.++....+..+.+|++.+|+|+.+..+-|.+.+.......-.+..|........ .+.. .|.... ... ....+
T Consensus 99 ~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (251)
T cd06439 99 AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGST 178 (251)
T ss_pred HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCe
Confidence 344555555667999999999999988788877776421334445544321110 0100 010000 000 01122
Q ss_pred CcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecC
Q psy10876 201 PYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 201 ~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
..+.|+++.+.+++.+ ..-.....||..++.-+...|.+....+
T Consensus 179 ~~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~ 222 (251)
T cd06439 179 VGANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEP 222 (251)
T ss_pred eeecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEecc
Confidence 3467777878887766 1122234799999988888886654443
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=96.80 E-value=0.062 Score=46.53 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=84.8
Q ss_pred cEEEEEEecccCchhhHHHHHHHHhcCC--ceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHH
Q psy10876 82 QVKYLFSIGNKENVVDVKLKEEIRRYDD--ILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIH 159 (319)
Q Consensus 82 ~v~~~FvlG~~~~~~~~~l~~E~~~~~D--Ii~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~ 159 (319)
.++++++...+.+.+.+.+++-.+.+.. +..+..-.+ .....|.- .+....+..+.+|++..|+|+.+.++-|..
T Consensus 30 ~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 30 KYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEK--VGINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred CeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCc--CCCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHHH
Confidence 3688888877765444555555556653 221211111 11223432 334455566889999999999998888888
Q ss_pred HHhhcCCCCcccEEEEecCCCceeccCccccccccccCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHH
Q psy10876 160 ELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWL 239 (319)
Q Consensus 160 ~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l 239 (319)
.+.......-....|. ++.|++.++.+++++++.--. .......||..++.-+
T Consensus 107 l~~~~~~~~~~~v~~~--------------------------~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~~l~~rl 159 (196)
T cd02520 107 MVAPLMDPGVGLVTCL--------------------------CAFGKSMALRREVLDAIGGFE-AFADYLAEDYFLGKLI 159 (196)
T ss_pred HHHHhhCCCCCeEEee--------------------------cccCceeeeEHHHHHhccChH-HHhHHHHHHHHHHHHH
Confidence 7776432012222221 467999999999999874321 1122346999999888
Q ss_pred HhCCCcEeecC
Q psy10876 240 SALDITRYHDV 250 (319)
Q Consensus 240 ~~lgI~~~~~~ 250 (319)
.+.|.+....+
T Consensus 160 ~~~G~~i~~~~ 170 (196)
T cd02520 160 WRLGYRVVLSP 170 (196)
T ss_pred HHcCCeEEEcc
Confidence 88886655443
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=96.63 E-value=0.19 Score=49.82 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=103.3
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHH
Q psy10876 50 SYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLH 129 (319)
Q Consensus 50 ~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~ 129 (319)
.+.+-|+|.+.-+...-++.|+.- .+. ...+.+++.+.+.+.+++.+.+++..+++..+..+. .. .|. -|. .
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sl-l~q-~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~-~~---~n~-Gka-~ 145 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAA-LAQ-TYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIH-LA---HNQ-GKA-I 145 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHH-HcC-CCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEE-eC---CCC-CHH-H
Confidence 456777777765554444444432 222 223467666655554443355555556676654332 11 122 232 4
Q ss_pred HHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCcee-cc---Cccccccccc---------c
Q psy10876 130 SFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVR-RA---GKWKEKNWFL---------C 196 (319)
Q Consensus 130 ~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~-r~---~k~~~~~~~~---------~ 196 (319)
+++...+..+.+|++..|.|+.+..+.|.+.++.... +++ .|.+.++..+. ++ ++....+ |. .
T Consensus 146 AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~-~~~--~g~v~g~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~ 221 (444)
T PRK14583 146 ALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIA-NPR--TGAVTGNPRIRTRSTLIGRVQVGE-FSSIIGLIKRTQ 221 (444)
T ss_pred HHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHh-CCC--eEEEEccceecCCCcchhhHHHHH-HHHHHHHHHHHH
Confidence 5666666678999999999999999998888776532 112 12222222111 11 1110000 10 0
Q ss_pred CCC-CC-cccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecC
Q psy10876 197 DRY-LP-YALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 197 ~~y-P~-y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
..| +. .++|++.++.+++++++---. +..-.||.-+|.-+...|.+....+
T Consensus 222 ~~~g~~~~~sG~~~~~rr~al~~vGg~~---~~~i~ED~dl~~rl~~~G~~i~~~p 274 (444)
T PRK14583 222 RVYGQVFTVSGVVAAFRRRALADVGYWS---PDMITEDIDISWKLQLKHWSVFFEP 274 (444)
T ss_pred HHhCCceEecCceeEEEHHHHHHcCCCC---CCcccccHHHHHHHHHcCCeEEEee
Confidence 111 22 357888999999988874222 2234799999998888776654333
No 18
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=96.52 E-value=0.26 Score=43.48 Aligned_cols=191 Identities=9% Similarity=-0.002 Sum_probs=97.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHH
Q psy10876 53 IVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFK 132 (319)
Q Consensus 53 lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~ 132 (319)
+-|+|.+.-....-.+.+..-=.+.......+++.+-+.+.++..+.+++..+++..+..+.+ .+ .+. -.++.
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~-~~--~~~----~~a~N 74 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDN-PK--RIQ----SAGLN 74 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeC-CC--CCc----hHHHH
Confidence 345555543332223333332222212245677777666655443444444444444443321 11 111 13455
Q ss_pred HHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCC-Cceec-c------Cccccc-ccccc--CCCCC
Q psy10876 133 YIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGR-ARVRR-A------GKWKEK-NWFLC--DRYLP 201 (319)
Q Consensus 133 w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~-~~~~r-~------~k~~~~-~~~~~--~~yP~ 201 (319)
...+..+.+|++.+|||..+.+.-|...++...........|..... ..+.. . ..+... ..+.. ...-.
T Consensus 75 ~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (249)
T cd02525 75 IGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGY 154 (249)
T ss_pred HHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcccccccccccc
Confidence 55555589999999999999988888877654321223344443211 11100 0 000000 00000 00011
Q ss_pred cccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecCCc
Q psy10876 202 YALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVRF 252 (319)
Q Consensus 202 y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~~f 252 (319)
++.|++.++++++.+++.--.. .....||..++.-+.+.|.+....+..
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~eD~~l~~r~~~~G~~~~~~~~~ 203 (249)
T cd02525 155 VDTVHHGAYRREVFEKVGGFDE--SLVRNEDAELNYRLRKAGYKIWLSPDI 203 (249)
T ss_pred ccccccceEEHHHHHHhCCCCc--ccCccchhHHHHHHHHcCcEEEEcCCe
Confidence 4578888999999888642211 233479999988777778776655443
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.46 E-value=0.13 Score=42.19 Aligned_cols=89 Identities=12% Similarity=0.010 Sum_probs=59.8
Q ss_pred hccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccCCCCCcccCCceeecHHHH
Q psy10876 136 EHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLV 215 (319)
Q Consensus 136 ~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~~G~gYvlS~~~~ 215 (319)
+..+.+|++..|||..+..+.+...+........-..+|.. +.|++.+++++++
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~ 124 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK--------------------------VSGAFLLVRREVF 124 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc--------------------------CceeeEeeeHHHH
Confidence 33478999999999999998888887754321111222221 4789999999999
Q ss_pred HHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecCC
Q psy10876 216 KFISENSHMLSSYISEDVSVGVWLSALDITRYHDVR 251 (319)
Q Consensus 216 ~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~~ 251 (319)
+.+..-..... ...||..+..-+...|.+....+.
T Consensus 125 ~~~~~~~~~~~-~~~eD~~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 125 EEVGGFDEDFF-LYYEDVDLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred HHcCCCChhhh-ccccHHHHHHHHHHcCCeEEEccc
Confidence 87642221111 267999998877777776655544
No 20
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.24 E-value=0.15 Score=44.46 Aligned_cols=156 Identities=10% Similarity=-0.101 Sum_probs=82.4
Q ss_pred EEEEEEecccCchhhHHHHHHHHhc--CCceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHH
Q psy10876 83 VKYLFSIGNKENVVDVKLKEEIRRY--DDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHE 160 (319)
Q Consensus 83 v~~~FvlG~~~~~~~~~l~~E~~~~--~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~ 160 (319)
++++.+-+.+.+...+.++ +...+ ..+..+. ... -.|. -|. .++.+..+.+..+|++.+|+|..+.++-|...
T Consensus 29 ~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~-~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l 103 (229)
T cd04192 29 FEVILVDDHSTDGTVQILE-FAAAKPNFQLKILN-NSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTF 103 (229)
T ss_pred eEEEEEcCCCCcChHHHHH-HHHhCCCcceEEee-ccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHH
Confidence 6776666655443334443 23333 3344332 222 2222 222 34566666678999999999999998888888
Q ss_pred HhhcCCCCcccEEEEecCCCceeccCcccccc---------ccccCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcC
Q psy10876 161 LENKFHYEKKLYWGFFDGRARVRRAGKWKEKN---------WFLCDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISE 231 (319)
Q Consensus 161 L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~---------~~~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~E 231 (319)
+..........+.|.................+ .......|..+.|+++++++++++++---. .......|
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~-~~~~~~~e 182 (229)
T cd04192 104 VAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFE-GNDHIASG 182 (229)
T ss_pred HHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCc-cccccccC
Confidence 87544313344555432210000000000000 011223455677999999999999874322 12234567
Q ss_pred hHHHHHHHHhCCC
Q psy10876 232 DVSVGVWLSALDI 244 (319)
Q Consensus 232 Dv~vG~~l~~lgI 244 (319)
|..++.-+...|.
T Consensus 183 D~~~~~~~~~~g~ 195 (229)
T cd04192 183 DDELLLAKVASKY 195 (229)
T ss_pred CHHHHHHHHHhCC
Confidence 7777655544444
No 21
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.21 E-value=0.1 Score=45.47 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=54.0
Q ss_pred EEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhH-HHHHHHHhcCCceeeC----CccccCCchhHHHHH
Q psy10876 55 ILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDV-KLKEEIRRYDDILLLN----QVPDEYSSLSQKVLH 129 (319)
Q Consensus 55 i~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~-~l~~E~~~~~DIi~~~----df~Dsy~nlt~K~~~ 129 (319)
|.|.|-+...+||+.+.+..... +. .+-|+-|........ ++. ..++.-.... ...-+.-.=++..+.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~--~~--~~e~~~Avdg~~l~~~~~~---~~~~~~~~~~~~~~~lt~gEiGC~lSH~~ 76 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL--GI--NFEFFDAVDGRDLSEDELF---RRYDPELFKKRYGRPLTPGEIGCALSHIK 76 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc--CC--ceEEEEeecccccchHHHH---HHhhhhhhhccccccCCcceEeehhhHHH
Confidence 56777888999999998877755 23 344555443322111 111 1111111000 011111222455666
Q ss_pred HHHHHHhccCeeEEEEecCCeEEehHHHHHHHhh
Q psy10876 130 SFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELEN 163 (319)
Q Consensus 130 ~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~ 163 (319)
.++-+.+. +.++.+-..||+.++.+ +.+.|..
T Consensus 77 ~w~~~v~~-~~~~~lIlEDDv~~~~~-f~~~l~~ 108 (200)
T PF01755_consen 77 AWQRIVDS-GLEYALILEDDVIFDPD-FKEFLEE 108 (200)
T ss_pred HHHHHHHc-CCCeEEEEecccccccc-HHHHHHH
Confidence 66666543 57899999999999865 4444433
No 22
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=96.18 E-value=0.18 Score=49.93 Aligned_cols=184 Identities=9% Similarity=0.003 Sum_probs=94.8
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHH
Q psy10876 49 HSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVL 128 (319)
Q Consensus 49 ~~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~ 128 (319)
..+.+-|+|++.-+...-++.|+.--.+.-....++++.+-+.+.|++.+.+++-.+.+..+... ..+.-. -| -
T Consensus 47 ~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~--~~~~~~---Gk-a 120 (439)
T TIGR03111 47 KLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLR--YMNSDQ---GK-A 120 (439)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEE--EeCCCC---CH-H
Confidence 34456666666544444455555543333222345555554444443323334334455554321 122112 23 3
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCC-CcccEEEEecCCCce-eccCcc---ccc--cc--c-----
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHY-EKKLYWGFFDGRARV-RRAGKW---KEK--NW--F----- 194 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~-~~~~y~G~~~~~~~~-~r~~k~---~~~--~~--~----- 194 (319)
.++.++.++.+.+|++..|+|..+..+.|.+.+...... +-....|.+...... .....+ ... ++ |
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 456666767788999999999999999998888775420 122233544321110 000000 000 00 0
Q ss_pred c-----c-CCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHh
Q psy10876 195 L-----C-DRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSA 241 (319)
Q Consensus 195 ~-----~-~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~ 241 (319)
. . ..-+..++|++.++.+++++++.--. ...-.||..++.=+..
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~ 250 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRE 250 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHH
Confidence 0 0 01122368999999999988753211 1223899999865543
No 23
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.88 E-value=0.4 Score=41.22 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=81.2
Q ss_pred cEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHH
Q psy10876 82 QVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHEL 161 (319)
Q Consensus 82 ~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L 161 (319)
.++++++-..+.+.+.+.+++-.++++..+.+- -.+.-.+.. ..+......++.+|++..|+|..+.++.|...+
T Consensus 27 ~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~-~~~~~~G~~----~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~ 101 (214)
T cd04196 27 NDELIISDDGSTDGTVEIIKEYIDKDPFIIILI-RNGKNLGVA----RNFESLLQAADGDYVFFCDQDDIWLPDKLERLL 101 (214)
T ss_pred CeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEE-eCCCCccHH----HHHHHHHHhCCCCEEEEECCCcccChhHHHHHH
Confidence 567777766655543344444444554322121 112212222 223333455689999999999999988888888
Q ss_pred hh-cCCCCcccEEEEec---CCCceeccCccccccc-----cccCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcCh
Q psy10876 162 EN-KFHYEKKLYWGFFD---GRARVRRAGKWKEKNW-----FLCDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISED 232 (319)
Q Consensus 162 ~~-~~~~~~~~y~G~~~---~~~~~~r~~k~~~~~~-----~~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~ED 232 (319)
+. .......++.|... ..........+..... +.......+..|+++++.+++++++..-.... ...||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~D 179 (214)
T cd04196 102 KAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFPDAD--VIMHD 179 (214)
T ss_pred HHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhccccccc--cccch
Confidence 76 22212333444321 1111111011100000 00111224567999999999999875432211 56889
Q ss_pred HHHHHHHHhCC
Q psy10876 233 VSVGVWLSALD 243 (319)
Q Consensus 233 v~vG~~l~~lg 243 (319)
.++...+...|
T Consensus 180 ~~~~~~~~~~~ 190 (214)
T cd04196 180 WWLALLASAFG 190 (214)
T ss_pred HHHHHHHHHcC
Confidence 98887776643
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=95.82 E-value=0.22 Score=43.67 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=66.1
Q ss_pred HHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCC-CcccEEEEec-CCCce----eccC----cccccc--ccccCC
Q psy10876 131 FKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHY-EKKLYWGFFD-GRARV----RRAG----KWKEKN--WFLCDR 198 (319)
Q Consensus 131 l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~-~~~~y~G~~~-~~~~~----~r~~----k~~~~~--~~~~~~ 198 (319)
+..+.+..+.+|++.+|+|+++.++.|..++...... +-....|... ..... .+.. ..+... .-....
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRW 155 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445578999999999999999888888776431 1122223211 01100 0000 000000 000011
Q ss_pred CCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEe
Q psy10876 199 YLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRY 247 (319)
Q Consensus 199 yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~ 247 (319)
...++.|++.++++++++++..-. .....||..++.-+.+.|.+..
T Consensus 156 ~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~ 201 (234)
T cd06421 156 GAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSV 201 (234)
T ss_pred CCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEE
Confidence 245678999999999999874321 2345799999988888776544
No 25
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=95.77 E-value=0.62 Score=43.20 Aligned_cols=188 Identities=11% Similarity=0.022 Sum_probs=94.0
Q ss_pred EEECCCCC-HHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHH--HHhcCCceeeCCccccCCchhHHHHHHHH
Q psy10876 56 LILTSSKN-YIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEE--IRRYDDILLLNQVPDEYSSLSQKVLHSFK 132 (319)
Q Consensus 56 ~V~S~~~~-~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E--~~~~~DIi~~~df~Dsy~nlt~K~~~~l~ 132 (319)
+|.+.-+. ....+.|..--.+.......+++.|-..+.+.+...+.++ .+.+..+-++. .+.-.+.. .+..
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~--~~~n~G~~----~a~N 76 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLR--LKKREGLI----RARI 76 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEE--cCCCCCHH----HHHH
Confidence 44444333 3334444444433311223466666655555444333332 22233343221 12222322 3344
Q ss_pred HHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecC--C-------Cce-ecc-Cccccc-ccc------
Q psy10876 133 YIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDG--R-------ARV-RRA-GKWKEK-NWF------ 194 (319)
Q Consensus 133 w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~--~-------~~~-~r~-~k~~~~-~~~------ 194 (319)
...+....+|++..|+|+.+...-|..+++........+..|.+.. . ..+ .+. -.|... .+.
T Consensus 77 ~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (299)
T cd02510 77 AGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEE 156 (299)
T ss_pred HHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHH
Confidence 4444557899999999999998888887776543112223332210 0 000 000 011100 011
Q ss_pred -----c-cCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeec
Q psy10876 195 -----L-CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHD 249 (319)
Q Consensus 195 -----~-~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~ 249 (319)
+ .....+++.|+++++++++.+++---.........||+-+..=+...|-+....
T Consensus 157 ~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~ 217 (299)
T cd02510 157 RRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIV 217 (299)
T ss_pred hhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEe
Confidence 0 112235678999999999999884332223334579999887777777654433
No 26
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=95.73 E-value=1.1 Score=40.10 Aligned_cols=191 Identities=10% Similarity=-0.047 Sum_probs=99.3
Q ss_pred CCeeEEEEEECCCCCHHHHH---HHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCC--ceeeCCccccCCch
Q psy10876 49 HSYFIVILILTSSKNYIRRK---NIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDD--ILLLNQVPDEYSSL 123 (319)
Q Consensus 49 ~~~~lli~V~S~~~~~~~R~---aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~D--Ii~~~df~Dsy~nl 123 (319)
..+.+-|+|++.-+...-.. .+++.-... ..++++++-+.+.+.+.+.+++-.++|++ +..+. .. .|.
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~---~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~--~~--~n~ 79 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDV---KDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRP--RP--GKL 79 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhccC---CCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEe--cC--CCC
Confidence 34556666666533222222 233322111 25677777776665444444444445653 22121 11 222
Q ss_pred hHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCC-c-e----ecc--Ccc--ccccc
Q psy10876 124 SQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRA-R-V----RRA--GKW--KEKNW 193 (319)
Q Consensus 124 t~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~-~-~----~r~--~k~--~~~~~ 193 (319)
.. -.++....+..+.+|++.+|+|..+.++.|.+++.........+..|...... . . .|. ++. .....
T Consensus 80 G~--~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~ 157 (243)
T PLN02726 80 GL--GTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQT 157 (243)
T ss_pred CH--HHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHH
Confidence 11 13444455555789999999999999988888887653223456677643211 0 0 010 000 00010
Q ss_pred cccCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecCC
Q psy10876 194 FLCDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVR 251 (319)
Q Consensus 194 ~~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~~ 251 (319)
...... +...|+..++++++++.+...... . ....|.-+..-+...|.+....|-
T Consensus 158 ~~~~~~-~d~~g~~~~~rr~~~~~i~~~~~~-~-~~~~~~el~~~~~~~g~~i~~vp~ 212 (243)
T PLN02726 158 LLWPGV-SDLTGSFRLYKRSALEDLVSSVVS-K-GYVFQMEIIVRASRKGYRIEEVPI 212 (243)
T ss_pred HhCCCC-CcCCCcccceeHHHHHHHHhhccC-C-CcEEehHHHHHHHHcCCcEEEeCc
Confidence 111111 235678889999999999753221 1 223466676666677877665553
No 27
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.59 E-value=0.84 Score=44.36 Aligned_cols=194 Identities=9% Similarity=-0.025 Sum_probs=112.4
Q ss_pred CeeEEEEEECCCCCH-HHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHH
Q psy10876 50 SYFIVILILTSSKNY-IRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVL 128 (319)
Q Consensus 50 ~~~lli~V~S~~~~~-~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~ 128 (319)
.+.+-++|++.-+.. ...+.++..=..+ -...+++.+.+.+.+...+.+++..+++++.+.+ ... .+-...-.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~d--yp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~-~~~---~~~~~gK~ 126 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQD--YPRYEVIVVDDGSTDETYEILEELGAEYGPNFRV-IYP---EKKNGGKA 126 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCC--CCCceEEEECCCCChhHHHHHHHHHhhcCcceEE-Eec---cccCccch
Confidence 366777777776665 3333444443333 2235777777655544446666666666533322 111 01122224
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCcccc-------c-----cccc-
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKE-------K-----NWFL- 195 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~-------~-----~~~~- 195 (319)
.++.+.....+.++++..|-|+.+..+.|.+.+..........+.|.......+...+.+.. . ....
T Consensus 127 ~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (439)
T COG1215 127 GALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAAS 206 (439)
T ss_pred HHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhh
Confidence 56677776768999999999999999999999988764112113343211000000000000 0 0000
Q ss_pred cCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecCCc
Q psy10876 196 CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVRF 252 (319)
Q Consensus 196 ~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~~f 252 (319)
......++.|++.++.+++++++.. ..+..-.||.-+|.-+...|.+....+.-
T Consensus 207 ~~g~~~~~~G~~~~~rr~aL~~~g~---~~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 207 KGGLISFLSGSSSAFRRSALEEVGG---WLEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred hcCCeEEEcceeeeEEHHHHHHhCC---CCCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 1234678999999999999999862 23444579999999999877665544433
No 28
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=95.17 E-value=0.85 Score=40.68 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=69.8
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCccc-EEE-EecC-CCceeccCcccccc---cc----c---
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKL-YWG-FFDG-RARVRRAGKWKEKN---WF----L--- 195 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~-y~G-~~~~-~~~~~r~~k~~~~~---~~----~--- 195 (319)
.++....++.+.+|++.+|+|+.+.++.|.+.+.........+ +.| .+.. +.....-.+....+ ++ +
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666789999999999999999988887764211232 222 2111 10000000100000 00 0
Q ss_pred cCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecC
Q psy10876 196 CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 196 ~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
....+..++|++.++++++++.+..-. +....||..++.=+...|.+....+
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~eD~~l~~rl~~~G~r~~~~~ 205 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWD---PFNVTEDADLGLRLARAGYRTGVLN 205 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCC---cccchhhHHHHHHHHHCCceEEEec
Confidence 112233467899999999999874322 2234799999988877776655443
No 29
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.14 E-value=0.91 Score=38.96 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=75.7
Q ss_pred EEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHh
Q psy10876 83 VKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELE 162 (319)
Q Consensus 83 v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~ 162 (319)
.+++.+-+.+.+.+.+.+++..+.++ +..+. .+.......-.-.+++++. ..+.+|++..|||..+..+-|...+.
T Consensus 27 ~eiiivD~~s~d~t~~~~~~~~~~~~-i~~~~--~~~n~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~ 102 (202)
T cd04185 27 DHIIVIDNASTDGTAEWLTSLGDLDN-IVYLR--LPENLGGAGGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLA 102 (202)
T ss_pred ceEEEEECCCCcchHHHHHHhcCCCc-eEEEE--CccccchhhHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHH
Confidence 35555555444433344444333333 22221 1222222333345566665 44789999999999999887777776
Q ss_pred hcCCCCcccEEEEecCCCceeccCccccccccccCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhC
Q psy10876 163 NKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSAL 242 (319)
Q Consensus 163 ~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~l 242 (319)
......-.++.|..... ++ .++|.++.+++++++--.... -....||+.++.-+...
T Consensus 103 ~~~~~~~~~~~~~~~~~-----~~-----------------~~~~~~~~~~~~~~~g~~~~~-~~~~~eD~~~~~r~~~~ 159 (202)
T cd04185 103 YADKDNPQFLAPLVLDP-----DG-----------------SFVGVLISRRVVEKIGLPDKE-FFIWGDDTEYTLRASKA 159 (202)
T ss_pred HHhcCCceEecceeEcC-----CC-----------------ceEEEEEeHHHHHHhCCCChh-hhccchHHHHHHHHHHc
Confidence 65421222333322111 00 346789999999877321111 12456999999888888
Q ss_pred CCcE
Q psy10876 243 DITR 246 (319)
Q Consensus 243 gI~~ 246 (319)
|...
T Consensus 160 G~~i 163 (202)
T cd04185 160 GPGI 163 (202)
T ss_pred CCcE
Confidence 7655
No 30
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=95.02 E-value=0.069 Score=46.13 Aligned_cols=124 Identities=20% Similarity=0.206 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccc--c-------cccc
Q psy10876 124 SQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWK--E-------KNWF 194 (319)
Q Consensus 124 t~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~--~-------~~~~ 194 (319)
..|+-.....+....++++++..|+|+.|+++-|.+.+......+-.+..|-... .+.+ +-|. . +..+
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~--~~~~-~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRG--VPAR-GFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccc--cCCc-CHHHHHHHHHHhHHHHHH
Confidence 4777776666554368999999999999999999998887653122333232111 1111 1111 0 0000
Q ss_pred ccCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecCC
Q psy10876 195 LCDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVR 251 (319)
Q Consensus 195 ~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~~ 251 (319)
..-.-.+++.|+.+++.+++++++--- ......-.||..+|..+.+.|.+..-.+.
T Consensus 93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~~~~~ 148 (175)
T PF13506_consen 93 QALGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVVLSPY 148 (175)
T ss_pred HHhcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEEEcch
Confidence 011235688999999999999886211 12234558999999999999987765553
No 31
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.02 E-value=1.8 Score=36.91 Aligned_cols=189 Identities=12% Similarity=0.028 Sum_probs=92.8
Q ss_pred EEEEEECCCCC-HHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHH-HHhcCCceeeCCccccCCchhHHHHHH
Q psy10876 53 IVILILTSSKN-YIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEE-IRRYDDILLLNQVPDEYSSLSQKVLHS 130 (319)
Q Consensus 53 lli~V~S~~~~-~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E-~~~~~DIi~~~df~Dsy~nlt~K~~~~ 130 (319)
+-|+|.+.-.. ..-.+.++.-=.+. ...++++.+-+.+.+...+.+.++ .+.+.-+.++. .+.-.+. -.+
T Consensus 3 vsiii~~~n~~~~~l~~~l~sl~~q~--~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~--~~~~~g~----~~a 74 (202)
T cd04184 3 ISIVMPVYNTPEKYLREAIESVRAQT--YPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVF--REENGGI----SAA 74 (202)
T ss_pred EEEEEecccCcHHHHHHHHHHHHhCc--CCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEE--cccCCCH----HHH
Confidence 44555555444 33333444432222 234566666555554433333333 33333333221 2221222 233
Q ss_pred HHHHHhccCeeEEEEecCCeEEehHHHHHHHhhc-CCCCcccEEEEecCCC-ceeccCccccccccccCCCCCcccCCce
Q psy10876 131 FKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENK-FHYEKKLYWGFFDGRA-RVRRAGKWKEKNWFLCDRYLPYALGGGY 208 (319)
Q Consensus 131 l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~-~~~~~~~y~G~~~~~~-~~~r~~k~~~~~~~~~~~yP~y~~G~gY 208 (319)
+....+..+.+|++..|+|..+..+.|...++.. ...+..+..|...... .......+..+.+-....+..-+.|++-
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLL 154 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceE
Confidence 4444445578999999999999998888888765 2212334433321100 0000011111111000001111235566
Q ss_pred eecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecCC
Q psy10876 209 VLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVR 251 (319)
Q Consensus 209 vlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~~ 251 (319)
++++++++++.--.. .....||.-++.-+.+.|.+..+.+.
T Consensus 155 ~~~r~~~~~iggf~~--~~~~~eD~~l~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 155 VYRRSLVRQVGGFRE--GFEGAQDYDLVLRVSEHTDRIAHIPR 195 (202)
T ss_pred eEEHHHHHHhCCCCc--CcccchhHHHHHHHHhccceEEEccH
Confidence 889988887642111 23357999998877777877666553
No 32
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=94.99 E-value=0.33 Score=39.55 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=69.0
Q ss_pred EEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhh-HHHHHHHH-----hcCCceeeCCccccCCchhHHHH
Q psy10876 55 ILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVD-VKLKEEIR-----RYDDILLLNQVPDEYSSLSQKVL 128 (319)
Q Consensus 55 i~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~-~~l~~E~~-----~~~DIi~~~df~Dsy~nlt~K~~ 128 (319)
+.|.+-+...+||+.+++..... + +.+-|+-|-...... ..+..... .++--+ ..+.-.-.+..+
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~--~--~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l-----~~gEiGC~lSH~ 72 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL--G--LDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPL-----TPGEIGCFLSHY 72 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc--C--CCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCC-----ChhhHHHHHHHH
Confidence 45678888999999999866554 2 334455555433222 22222111 111111 122223345555
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccCCCCCcccCCce
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGY 208 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~~G~gY 208 (319)
.+++-+.+. +.++.+-.+||+.+..+ +..||
T Consensus 73 ~~w~~~~~~-~~~~alIlEDDv~~~~~------------------------------------------------~~~~Y 103 (128)
T cd06532 73 KLWQKIVES-NLEYALILEDDAILDPD------------------------------------------------GTAGY 103 (128)
T ss_pred HHHHHHHHc-CCCeEEEEccCcEECCC------------------------------------------------CceEE
Confidence 666665532 56899999999999876 44789
Q ss_pred eecHHHHHHHHHhcCc
Q psy10876 209 VLSHLLVKFISENSHM 224 (319)
Q Consensus 209 vlS~~~~~~L~~~~~~ 224 (319)
++|+++|++|++....
T Consensus 104 ~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 104 LVSRKGAKKLLAALEP 119 (128)
T ss_pred EeCHHHHHHHHHhCCC
Confidence 9999999999997643
No 33
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=94.93 E-value=0.038 Score=50.32 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=43.3
Q ss_pred cCCceeecHHHHHHHHHhcC-c---CCCCCcChHHHHHHHHhCCCcEeecCCccc
Q psy10876 204 LGGGYVLSHLLVKFISENSH-M---LSSYISEDVSVGVWLSALDITRYHDVRFDT 254 (319)
Q Consensus 204 ~G~gYvlS~~~~~~L~~~~~-~---~~~~~~EDv~vG~~l~~lgI~~~~~~~f~~ 254 (319)
+|+|+.+|..+|++|.+.-. + .+.+..-|--+..|+.++|++.+..++||.
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 89999999999999998632 2 345566899999999999999999999985
No 34
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=94.70 E-value=1.9 Score=36.05 Aligned_cols=100 Identities=12% Similarity=-0.080 Sum_probs=61.5
Q ss_pred HHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccCCCCCcccCCcee
Q psy10876 130 SFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGYV 209 (319)
Q Consensus 130 ~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~~G~gYv 209 (319)
++....+.++.+|++..|+|..+..+-|...++...+ .....|.......... .....|+++.
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~--~~~v~g~~~~~~~~~~---------------~~~~~~~~~~ 132 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP--GVFLSGSRVLLNEKLT---------------ERGIRGCNMS 132 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC--CcEEecceeecccccc---------------eeEeccceEE
Confidence 3444555567899999999999988888887776643 3333343221110000 0234678888
Q ss_pred ecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcE
Q psy10876 210 LSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITR 246 (319)
Q Consensus 210 lS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~ 246 (319)
+.++.+.++..-.........||+.++.=+.+.|+..
T Consensus 133 ~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~ 169 (182)
T cd06420 133 FWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKF 169 (182)
T ss_pred EEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcE
Confidence 8888877543322222233479999998888887443
No 35
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.64 E-value=0.49 Score=38.37 Aligned_cols=152 Identities=12% Similarity=0.031 Sum_probs=73.7
Q ss_pred EEEECCCCCHHHHH-HHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHh-cCCceeeCCccccCCchhHHHHHHHH
Q psy10876 55 ILILTSSKNYIRRK-NIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRR-YDDILLLNQVPDEYSSLSQKVLHSFK 132 (319)
Q Consensus 55 i~V~S~~~~~~~R~-aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~-~~DIi~~~df~Dsy~nlt~K~~~~l~ 132 (319)
|.+.-.++...+-- .+++. . ....+++++-..+. +....+.+|... ...+..+ ..-.|. -.-.++.
T Consensus 4 ip~~n~~~~l~~~l~sl~~q--~---~~~~eiivvdd~s~-d~~~~~~~~~~~~~~~i~~i----~~~~n~--g~~~~~n 71 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQ--T---DPDFEIIVVDDGST-DETEEILEEYAESDPNIRYI----RNPENL--GFSAARN 71 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHH--S---GCEEEEEEEECS-S-SSHHHHHHHHHCCSTTEEEE----EHCCCS--HHHHHHH
T ss_pred EEeeCCHHHHHHHHHHHhhc--c---CCCEEEEEeccccc-cccccccccccccccccccc----cccccc--ccccccc
Confidence 33333444444332 56666 1 23456666655553 333333344333 3333322 222232 2234444
Q ss_pred HHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCC----ceeccC---ccccc---c-ccccCCCCC
Q psy10876 133 YIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRA----RVRRAG---KWKEK---N-WFLCDRYLP 201 (319)
Q Consensus 133 w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~----~~~r~~---k~~~~---~-~~~~~~yP~ 201 (319)
...++.+.+|++.+|||.++....|..+++..........+|...... ...+.. .+... . ......-.+
T Consensus 72 ~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (169)
T PF00535_consen 72 RGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKIS 151 (169)
T ss_dssp HHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSS
T ss_pred ccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcc
Confidence 555556677999999999999987777666654323345556543111 111110 00110 0 011122334
Q ss_pred cccCCceeecHHHHHHH
Q psy10876 202 YALGGGYVLSHLLVKFI 218 (319)
Q Consensus 202 y~~G~gYvlS~~~~~~L 218 (319)
++.|++.++++++++++
T Consensus 152 ~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 152 FFIGSCALFRRSVFEEI 168 (169)
T ss_dssp EESSSCEEEEEHHHHHC
T ss_pred cccccEEEEEHHHHHhh
Confidence 77899999999999875
No 36
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=94.58 E-value=1.6 Score=38.29 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=63.9
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHH---hhcCCCCccc-EEEEe-cCCCceeccCccccccc------cccC
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHEL---ENKFHYEKKL-YWGFF-DGRARVRRAGKWKEKNW------FLCD 197 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L---~~~~~~~~~~-y~G~~-~~~~~~~r~~k~~~~~~------~~~~ 197 (319)
.+++.+... +++|++..|||+.+.++.|..++ ..... ...+ .+|.. ...........+....+ ....
T Consensus 66 ~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (237)
T cd02526 66 IGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDK-NSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEE 143 (237)
T ss_pred HHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhcc-CCCeEEEeeeEEcCCCCeeccceeccCccceecccccC
Confidence 444444322 57999999999999988888875 22221 1222 22322 11111000000100000 0001
Q ss_pred --CCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecC
Q psy10876 198 --RYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 198 --~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
.-..++.|+|.++++++++.+---.... ....||+.++.-+.+.|.+....+
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEc
Confidence 1123456888999999998874322111 245789999988888887655544
No 37
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.47 E-value=2.6 Score=35.46 Aligned_cols=120 Identities=8% Similarity=-0.191 Sum_probs=69.5
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCC-CCcccEEEEecC--CCceeccCccccccccccCCCCCcccC
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFH-YEKKLYWGFFDG--RARVRRAGKWKEKNWFLCDRYLPYALG 205 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~-~~~~~y~G~~~~--~~~~~r~~k~~~~~~~~~~~yP~y~~G 205 (319)
.++..+.+.++.+|++..|+|..+..+.+...+..... ....+..|.... ........+..............+..|
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICH 144 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccC
Confidence 45566666778899999999999999999888743321 134455665321 111000000000000111122345678
Q ss_pred CceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecC
Q psy10876 206 GGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 206 ~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
++.++++++.+.+..-. -.....||..+..-+...|......+
T Consensus 145 ~~~~~~~~~~~~~~~f~--~~~~~~~D~~~~~r~~~~g~~~~~~~ 187 (202)
T cd06433 145 QATFFRRSLFEKYGGFD--ESYRIAADYDLLLRLLLAGKIFKYLP 187 (202)
T ss_pred cceEEEHHHHHHhCCCc--hhhCchhhHHHHHHHHHcCCceEecc
Confidence 88999999998874311 11234689888877777776654443
No 38
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=94.20 E-value=1.6 Score=38.36 Aligned_cols=157 Identities=10% Similarity=-0.026 Sum_probs=82.8
Q ss_pred cEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHH
Q psy10876 82 QVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHEL 161 (319)
Q Consensus 82 ~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L 161 (319)
..+++++...+.+...+.+ ++...+..+.++. .+ ..+ |. .++....+..+.+|++.+|+|+.+..+.|.+.+
T Consensus 28 ~~eiivvdd~s~d~~~~~l-~~~~~~~~~~v~~--~~-~~g---~~-~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 28 PLEIIVVTDGDDEPYLSIL-SQTVKYGGIFVIT--VP-HPG---KR-RALAEGIRHVTTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCEEEEEeCCCChHHHHHH-HhhccCCcEEEEe--cC-CCC---hH-HHHHHHHHHhCCCEEEEECCCceeChhHHHHHH
Confidence 4466666665554332333 3455666665331 21 122 22 233333334489999999999999999998888
Q ss_pred hhcCCCCcccEEEEecCCCceeccCcccc------cc----ccc-cCCC-C-CcccCCceeecHHHHHHHHHhcC-----
Q psy10876 162 ENKFHYEKKLYWGFFDGRARVRRAGKWKE------KN----WFL-CDRY-L-PYALGGGYVLSHLLVKFISENSH----- 223 (319)
Q Consensus 162 ~~~~~~~~~~y~G~~~~~~~~~r~~k~~~------~~----~~~-~~~y-P-~y~~G~gYvlS~~~~~~L~~~~~----- 223 (319)
.......-....|....... . .+.|.. .. .+. .... . +.++|++.++.+++++.+.-...
T Consensus 100 ~~~~~~~v~~v~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~ 177 (235)
T cd06434 100 KPFEDPKVGGVGTNQRILRP-R-DSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNET 177 (235)
T ss_pred HhccCCCEeEEcCceEeecC-c-ccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhh
Confidence 77742122222222111000 0 011100 00 000 0011 1 23578888899998887543211
Q ss_pred --cCCCCCcChHHHHHHHHhCCCcEee
Q psy10876 224 --MLSSYISEDVSVGVWLSALDITRYH 248 (319)
Q Consensus 224 --~~~~~~~EDv~vG~~l~~lgI~~~~ 248 (319)
..+....||..++.-+.+.|.+..-
T Consensus 178 ~~~~~~~~~eD~~l~~~~~~~g~~~~~ 204 (235)
T cd06434 178 FMGRRLNAGDDRFLTRYVLSHGYKTVY 204 (235)
T ss_pred hcCCCCCcCchHHHHHHHHHCCCeEEE
Confidence 1234567999999888887765443
No 39
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=94.16 E-value=3.1 Score=38.81 Aligned_cols=188 Identities=13% Similarity=0.075 Sum_probs=100.1
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhh-HHHHHHHHhcCCceeeCCccccCCchhHHHHH
Q psy10876 51 YFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVD-VKLKEEIRRYDDILLLNQVPDEYSSLSQKVLH 129 (319)
Q Consensus 51 ~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~-~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~ 129 (319)
+.+-++|.|.-.-....+.+...=.+.. ....++ ++.+.+.+.. +.+.+.. ++++..+. ..++.- ...=.-.
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~--~~~~iv-~vDn~s~d~~~~~~~~~~--~~~v~~i~-~~~NlG-~agg~n~ 75 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTY--PDDVIV-VVDNGSTDGSLEALKARF--FPNVRLIE-NGENLG-FAGGFNR 75 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCC--CCcEEE-EccCCCCCCCHHHHHhhc--CCcEEEEE-cCCCcc-chhhhhH
Confidence 3445556665555555555655544442 112222 4443333332 3333222 67777543 122211 0111114
Q ss_pred HHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCC----ceecc--------Cccc-cccc-cc
Q psy10876 130 SFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRA----RVRRA--------GKWK-EKNW-FL 195 (319)
Q Consensus 130 ~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~----~~~r~--------~k~~-~~~~-~~ 195 (319)
+++.+...- .+|++..++|+.+..+-|.++++..+........|...... .+.+. ..|. .... ..
T Consensus 76 g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (305)
T COG1216 76 GIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIA 154 (305)
T ss_pred HHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceeccccccc
Confidence 566665432 22999999999999999999998876523344444432210 11110 1111 1110 00
Q ss_pred -----cCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEe
Q psy10876 196 -----CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRY 247 (319)
Q Consensus 196 -----~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~ 247 (319)
....-+++.|++.++++++++++-- ...--++..||+-++.=++++|.+..
T Consensus 155 ~~~~~~~~~~~~~~G~~~li~~~~~~~vG~-~de~~F~y~eD~D~~~R~~~~G~~i~ 210 (305)
T COG1216 155 PDLSSYLEVVASLSGACLLIRREAFEKVGG-FDERFFIYYEDVDLCLRARKAGYKIY 210 (305)
T ss_pred ccccchhhhhhhcceeeeEEcHHHHHHhCC-CCcccceeehHHHHHHHHHHcCCeEE
Confidence 0111225789999999999999865 22223568999999998888886543
No 40
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=93.98 E-value=7.2 Score=41.18 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=70.5
Q ss_pred chhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCccc-EEEEe--cCCCcee-cc-Cccc-cc---c
Q psy10876 122 SLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKL-YWGFF--DGRARVR-RA-GKWK-EK---N 192 (319)
Q Consensus 122 nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~-y~G~~--~~~~~~~-r~-~k~~-~~---~ 192 (319)
|...|.- .+..+.++.+.+|++..|.|+.+..+-|.+.+..... ++++ .++.. ..+..+. ++ +... .+ +
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~ 289 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENE 289 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHH
Confidence 3334533 4566666778899999999999999888887766532 1222 12111 1111111 11 0000 00 0
Q ss_pred -cc----cc-C-CCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeec
Q psy10876 193 -WF----LC-D-RYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHD 249 (319)
Q Consensus 193 -~~----~~-~-~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~ 249 (319)
+| .+ + .-.+++.|++.++.+++++++---. ...-.||..+|.-+.+.|.+....
T Consensus 290 ~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~ 350 (713)
T TIGR03030 290 LFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYL 350 (713)
T ss_pred HHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEe
Confidence 01 00 1 1124667999999999998874211 123479999999998888775433
No 41
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=93.90 E-value=1.7 Score=38.27 Aligned_cols=161 Identities=11% Similarity=0.022 Sum_probs=84.5
Q ss_pred cEEEEEEecccCchhh-HHHHHHHHhcC-CceeeCCccccCCchhHHHHHHHHHHHhcc--CeeEEEEecCCeEEehHHH
Q psy10876 82 QVKYLFSIGNKENVVD-VKLKEEIRRYD-DILLLNQVPDEYSSLSQKVLHSFKYIYEHF--DFQYLLKCDDDTFVRVPNI 157 (319)
Q Consensus 82 ~v~~~FvlG~~~~~~~-~~l~~E~~~~~-DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~--~~~~vlk~DDD~fVn~~~L 157 (319)
.++++++-+.+.+.+. +.+++=.++++ ++.++. .. .|...| ..++.+..+.. +++|++..|+|+.+.++.|
T Consensus 28 ~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~-~~---~~~G~~-~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l 102 (236)
T cd06435 28 NFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFH-VE---PLPGAK-AGALNYALERTAPDAEIIAVIDADYQVEPDWL 102 (236)
T ss_pred CcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEE-cC---CCCCCc-hHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHH
Confidence 4677776666655443 22322122232 343221 11 122222 23566666665 4799999999999999999
Q ss_pred HHHHhhcCCCCcccEEEEec-CC--Cceec-cCccccccccc----c-CC-CCCcccCCceeecHHHHHHHHHhcCcCCC
Q psy10876 158 IHELENKFHYEKKLYWGFFD-GR--ARVRR-AGKWKEKNWFL----C-DR-YLPYALGGGYVLSHLLVKFISENSHMLSS 227 (319)
Q Consensus 158 ~~~L~~~~~~~~~~y~G~~~-~~--~~~~r-~~k~~~~~~~~----~-~~-yP~y~~G~gYvlS~~~~~~L~~~~~~~~~ 227 (319)
..++.......-.+..|... .. ..+.. ...|....++. . .. --.++.|++.++++++++++---. +.
T Consensus 103 ~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~---~~ 179 (236)
T cd06435 103 KRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWD---EW 179 (236)
T ss_pred HHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCC---Cc
Confidence 88887754211122222110 00 00000 00010000110 0 00 012467888999999999874321 22
Q ss_pred CCcChHHHHHHHHhCCCcEeecC
Q psy10876 228 YISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 228 ~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
+..||+-++.=+.+.|.+....+
T Consensus 180 ~~~eD~dl~~r~~~~G~~~~~~~ 202 (236)
T cd06435 180 CITEDSELGLRMHEAGYIGVYVA 202 (236)
T ss_pred cccchHHHHHHHHHCCcEEEEcc
Confidence 35899999988888887655443
No 42
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=93.87 E-value=3.5 Score=35.73 Aligned_cols=160 Identities=12% Similarity=-0.006 Sum_probs=77.2
Q ss_pred cEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHH
Q psy10876 82 QVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHEL 161 (319)
Q Consensus 82 ~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L 161 (319)
.++++.|-..+.+...+.+++-.+.++-+..+. .+.-.+.. .++....+....+|++.+|+|..+.++.|..++
T Consensus 27 ~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~--~~~n~G~~----~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~ 100 (224)
T cd06442 27 DYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIV--RPGKRGLG----SAYIEGFKAARGDVIVVMDADLSHPPEYIPELL 100 (224)
T ss_pred CeEEEEEeCCCCCChHHHHHHHHHhCCceEEEe--cCCCCChH----HHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 456666654444333233333334444332221 22222322 233333334456999999999999998888888
Q ss_pred hh-cCCCCcccEEEEecCCCceeccCccc---c---ccccc---cCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcC
Q psy10876 162 EN-KFHYEKKLYWGFFDGRARVRRAGKWK---E---KNWFL---CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISE 231 (319)
Q Consensus 162 ~~-~~~~~~~~y~G~~~~~~~~~r~~k~~---~---~~~~~---~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~E 231 (319)
+. ..+ ...+..|..........+-.+. . ...+. ...-.+.+.|++.++++++++++... .......+
T Consensus 101 ~~~~~~-~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ig~~--~~~~~~~~ 177 (224)
T cd06442 101 EAQLEG-GADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFRAYRREVLEKLIDS--LVSKGYKF 177 (224)
T ss_pred HHHhcC-CCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCccchhhHHHHHHHhhh--ccCCCcEE
Confidence 86 333 4455666532211110000000 0 00000 01112346788889999999998721 11111122
Q ss_pred hHHHHHHHHhCCCcEeecC
Q psy10876 232 DVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 232 Dv~vG~~l~~lgI~~~~~~ 250 (319)
|.-+..-+.+.|.+....+
T Consensus 178 ~~~l~~~~~~~g~~i~~~p 196 (224)
T cd06442 178 QLELLVRARRLGYRIVEVP 196 (224)
T ss_pred eHHHHHHHHHcCCeEEEeC
Confidence 3334444455665544433
No 43
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=93.75 E-value=6.5 Score=37.44 Aligned_cols=194 Identities=13% Similarity=0.055 Sum_probs=97.9
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhccc------cCCcEEEEEEecccCchhhHHHHHHHHhc--C--CceeeCCcc
Q psy10876 48 KHSYFIVILILTSSKNYIRRKNIRDTWIKNI------EKYQVKYLFSIGNKENVVDVKLKEEIRRY--D--DILLLNQVP 117 (319)
Q Consensus 48 ~~~~~lli~V~S~~~~~~~R~aIR~TW~~~~------~~~~v~~~FvlG~~~~~~~~~l~~E~~~~--~--DIi~~~df~ 117 (319)
.+.+.+-|+|+..-+...-.+.++++..... .....++++|-..+.+.+.+.+++-.+.+ . ++..+
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi---- 142 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLL---- 142 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEE----
Confidence 3556677777766554444456666665321 12357777777666554433333333333 1 23322
Q ss_pred ccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcC---CCCcccEEEEecCCCc--eeccCccc---
Q psy10876 118 DEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKF---HYEKKLYWGFFDGRAR--VRRAGKWK--- 189 (319)
Q Consensus 118 Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~---~~~~~~y~G~~~~~~~--~~r~~k~~--- 189 (319)
..-.|.- | -.+++...+....+|++.+|.|....++.+..+++... ....++.+|....... ......|+
T Consensus 143 ~~~~N~G-~-~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~ 220 (333)
T PTZ00260 143 SLLRNKG-K-GGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNI 220 (333)
T ss_pred EcCCCCC-h-HHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHH
Confidence 1112221 1 12333333344689999999999999887666655432 1134577887532110 00011111
Q ss_pred cc-------cccccCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeecC
Q psy10876 190 EK-------NWFLCDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 190 ~~-------~~~~~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
.. ....+...+.. ..+.-++++++++.++... +...+. -|+.+-..+.+.|.+....|
T Consensus 221 ~~~~~~~l~~~~~~~~i~D~-~~Gfk~~~r~~~~~i~~~~-~~~~~~-fd~Ell~~a~~~g~~I~EvP 285 (333)
T PTZ00260 221 LMYGFHFIVNTICGTNLKDT-QCGFKLFTRETARIIFPSL-HLERWA-FDIEIVMIAQKLNLPIAEVP 285 (333)
T ss_pred HHHHHHHHHHHHcCCCcccC-CCCeEEEeHHHHHHHhhhc-cccCcc-chHHHHHHHHHcCCCEEEEc
Confidence 00 11112222222 2333589999999986542 222222 36666666777776554443
No 44
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=93.44 E-value=7.8 Score=39.25 Aligned_cols=191 Identities=12% Similarity=0.105 Sum_probs=98.5
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhh-HHHHHHHHhcCCceeeCCccccCCchhHHH
Q psy10876 49 HSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVD-VKLKEEIRRYDDILLLNQVPDEYSSLSQKV 127 (319)
Q Consensus 49 ~~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~-~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~ 127 (319)
+.+.+-|+|...-+..--.+.|+..=.+. ...+.+++++.. .+++.. +.+++=.++|..+..+- . ...+.+-|.
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~l-dY~~~eIiVv~d-~ndd~T~~~v~~l~~~~p~v~~vv--~-~~~gp~~Ka 138 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLATL-DYENYRIFVGTY-PNDPATLREVDRLAARYPRVHLVI--V-PHDGPTSKA 138 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHcC-CCCCeEEEEEEC-CCChhHHHHHHHHHHHCCCeEEEE--e-CCCCCCCHH
Confidence 35566677766544444444555432222 123445544443 333333 33433345677653221 1 112223455
Q ss_pred HHHHHHHHh------cc---CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCcc----cccccc
Q psy10876 128 LHSFKYIYE------HF---DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKW----KEKNWF 194 (319)
Q Consensus 128 ~~~l~w~~~------~~---~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~----~~~~~~ 194 (319)
- ++.|+.+ .+ ++++++..|-|..+.++.|..+-.. .+ +..+.-..+..... ..+.| +..++.
T Consensus 139 ~-aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~-~~-~~~~VQ~pv~~~~~--~~~~~~ag~y~~ef~ 213 (504)
T PRK14716 139 D-CLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYL-LP-RHDFVQLPVFSLPR--DWGEWVAGTYMDEFA 213 (504)
T ss_pred H-HHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhh-cC-CCCEEecceeccCC--chhHHHHHHHHHHHH
Confidence 4 4444432 22 4699999999999999998765332 22 22221111111000 01111 111100
Q ss_pred -------c-cCC--CCCcccCCceeecHHHHHHHHHhcC---cCCCCCcChHHHHHHHHhCCCcEeec
Q psy10876 195 -------L-CDR--YLPYALGGGYVLSHLLVKFISENSH---MLSSYISEDVSVGVWLSALDITRYHD 249 (319)
Q Consensus 195 -------~-~~~--yP~y~~G~gYvlS~~~~~~L~~~~~---~~~~~~~EDv~vG~~l~~lgI~~~~~ 249 (319)
+ .+. -+..++|.|+++++++++++..... .-...--||.-+|.-+...|.+..-.
T Consensus 214 ~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~ 281 (504)
T PRK14716 214 ESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFV 281 (504)
T ss_pred HHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 0 011 1234679999999999999865432 22345589999999999888776543
No 45
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=93.08 E-value=0.84 Score=36.94 Aligned_cols=146 Identities=10% Similarity=-0.042 Sum_probs=72.8
Q ss_pred HHHHHHHhccc--cCCcEEEEEEecccCchhhHHHHHHHHhcCC-ceeeCCccccCCchhHHHHHHHHHHHhccCeeEEE
Q psy10876 68 KNIRDTWIKNI--EKYQVKYLFSIGNKENVVDVKLKEEIRRYDD-ILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLL 144 (319)
Q Consensus 68 ~aIR~TW~~~~--~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~D-Ii~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vl 144 (319)
+.|+++-.+-. ....++++.+-..+.+...+.+.++...+.- ++.+. .+.-.. ...+..++.+.++.+|++
T Consensus 10 ~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~--~~~~~g----~~~~~n~~~~~~~~~~i~ 83 (180)
T cd06423 10 AVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVR--DKENGG----KAGALNAGLRHAKGDIVV 83 (180)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEE--ecccCC----chHHHHHHHHhcCCCEEE
Confidence 34555444332 1135566666555544333444444443322 22121 111111 234556666666899999
Q ss_pred EecCCeEEehHHHHHHHhhcCCC-CcccEEEEecCCCc---eecc---Ccccccc-----ccccCCCCCcccCCceeecH
Q psy10876 145 KCDDDTFVRVPNIIHELENKFHY-EKKLYWGFFDGRAR---VRRA---GKWKEKN-----WFLCDRYLPYALGGGYVLSH 212 (319)
Q Consensus 145 k~DDD~fVn~~~L~~~L~~~~~~-~~~~y~G~~~~~~~---~~r~---~k~~~~~-----~~~~~~yP~y~~G~gYvlS~ 212 (319)
.+|+|..+....|..++...... .-..+.|....... .... ..+.... ........+.+.|.++++++
T Consensus 84 ~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 163 (180)
T cd06423 84 VLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRR 163 (180)
T ss_pred EECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecCchHHHHHH
Confidence 99999999887777774544321 22233343321110 0100 0000000 00012334567899999999
Q ss_pred HHHHHHH
Q psy10876 213 LLVKFIS 219 (319)
Q Consensus 213 ~~~~~L~ 219 (319)
++++++-
T Consensus 164 ~~~~~~g 170 (180)
T cd06423 164 EALREVG 170 (180)
T ss_pred HHHHHhC
Confidence 9998864
No 46
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=92.94 E-value=6.5 Score=41.41 Aligned_cols=197 Identities=9% Similarity=0.032 Sum_probs=107.7
Q ss_pred CCCCeeEEEEEECCCCCHHH-HHHHHHHHhccc---cCCcEEEEEEecccCchhhHH-----HHHHHHhcC---CceeeC
Q psy10876 47 LKHSYFIVILILTSSKNYIR-RKNIRDTWIKNI---EKYQVKYLFSIGNKENVVDVK-----LKEEIRRYD---DILLLN 114 (319)
Q Consensus 47 ~~~~~~lli~V~S~~~~~~~-R~aIR~TW~~~~---~~~~v~~~FvlG~~~~~~~~~-----l~~E~~~~~---DIi~~~ 114 (319)
.+..+++.|+|++.-+..++ ++.++.+..+-. ...+.++ |++....++.... +.+-.++++ .|..
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y-- 196 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY-- 196 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE--
Confidence 34567788888887766543 346666665321 2234555 8888776654311 122223343 3432
Q ss_pred CccccCCchhHHHHHHHHHHHhcc-CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceec-cCcccccc
Q psy10876 115 QVPDEYSSLSQKVLHSFKYIYEHF-DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRR-AGKWKEKN 192 (319)
Q Consensus 115 df~Dsy~nlt~K~~~~l~w~~~~~-~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r-~~k~~~~~ 192 (319)
..--.|.-.|.-..-.+....- +++|++-.|-|+.+..+-|.+.+..... +++ +|-+.....+.. ++-+..-.
T Consensus 197 --r~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~--vGlVQt~~~~~n~~slfaR~q 271 (691)
T PRK05454 197 --RRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPR--AGLIQTLPVAVGADTLFARLQ 271 (691)
T ss_pred --EECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcC--EEEEeCCccCcCCCCHHHHHH
Confidence 2222455567776666664333 7899999999999999999999977642 222 354443222211 11010000
Q ss_pred ccccCCCC--------------CcccCCceeecHHHHHHHHHhc--CcC----CCCCcChHHHHHHHHhCCCcEeecCC
Q psy10876 193 WFLCDRYL--------------PYALGGGYVLSHLLVKFISENS--HML----SSYISEDVSVGVWLSALDITRYHDVR 251 (319)
Q Consensus 193 ~~~~~~yP--------------~y~~G~gYvlS~~~~~~L~~~~--~~~----~~~~~EDv~vG~~l~~lgI~~~~~~~ 251 (319)
.+....|- ....|...++.+++......-. ... ...-.||...|..+...|-+..-.+.
T Consensus 272 qf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd 350 (691)
T PRK05454 272 QFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPD 350 (691)
T ss_pred HHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc
Confidence 01111110 0123666788888776643110 001 12347899999999998876554444
No 47
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.57 E-value=2.4 Score=36.17 Aligned_cols=115 Identities=10% Similarity=-0.046 Sum_probs=63.0
Q ss_pred HHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCC-CcccEEEEecC---CCceeccCccccc----cccccCCCCC
Q psy10876 130 SFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHY-EKKLYWGFFDG---RARVRRAGKWKEK----NWFLCDRYLP 201 (319)
Q Consensus 130 ~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~-~~~~y~G~~~~---~~~~~r~~k~~~~----~~~~~~~yP~ 201 (319)
++....+.++.+|++..|+|.++.++.|...+...... .-.++.|.... ...... ... .+ ........-.
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 148 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIG-KRR-LPTSHDDILKFARRRS 148 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeec-ccc-CCCCHHHHHHHhccCC
Confidence 44555556688999999999999998888888765321 22344443221 111111 000 01 0000000001
Q ss_pred cccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeec
Q psy10876 202 YALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHD 249 (319)
Q Consensus 202 y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~ 249 (319)
...|++.++.+++++++..- -.....||..+..-+...|.+....
T Consensus 149 ~~~~~~~~~rr~~~~~~g~~---~~~~~~eD~~~~~r~~~~g~~~~~~ 193 (201)
T cd04195 149 PFNHPTVMFRKSKVLAVGGY---QDLPLVEDYALWARMLANGARFANL 193 (201)
T ss_pred CCCChHHhhhHHHHHHcCCc---CCCCCchHHHHHHHHHHcCCceecc
Confidence 12456678888777665321 1236789999998887767554443
No 48
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=91.88 E-value=0.63 Score=39.87 Aligned_cols=104 Identities=14% Similarity=0.043 Sum_probs=63.6
Q ss_pred EEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceecc--Cccccccc-------c---ccCCCCCcccCCcee
Q psy10876 142 YLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRA--GKWKEKNW-------F---LCDRYLPYALGGGYV 209 (319)
Q Consensus 142 ~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~--~k~~~~~~-------~---~~~~yP~y~~G~gYv 209 (319)
|++.+|+|+.+..+-|.+.+......+-...-|..... +..+ .++...++ . ..-..+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 68999999999998888887766520222333332211 1000 11111110 0 112346678999999
Q ss_pred ecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeec
Q psy10876 210 LSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHD 249 (319)
Q Consensus 210 lS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~ 249 (319)
+++++++++.--. -.....||..+|.-+.+.|.+....
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~ 116 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYV 116 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEe
Confidence 9999999875322 2345579999998888888665443
No 49
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=91.74 E-value=2.8 Score=35.20 Aligned_cols=133 Identities=13% Similarity=0.059 Sum_probs=73.2
Q ss_pred CcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHH
Q psy10876 81 YQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHE 160 (319)
Q Consensus 81 ~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~ 160 (319)
..++++.+-+.+.+...+.+++..+++..+..+. .. .|.- + -.+++...+....+|++.+|+|.....+.|...
T Consensus 28 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~-~~---~n~G-~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l 101 (181)
T cd04187 28 YDYEIIFVDDGSTDRTLEILRELAARDPRVKVIR-LS---RNFG-Q-QAALLAGLDHARGDAVITMDADLQDPPELIPEM 101 (181)
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEE-ec---CCCC-c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHH
Confidence 3567767666655543344444445555554332 22 2211 1 244455555566799999999999988877777
Q ss_pred HhhcCCCCcccEEEEecCCCcee-cc--Cccc--cccccccCCCCCcccCCceeecHHHHHHHHHh
Q psy10876 161 LENKFHYEKKLYWGFFDGRARVR-RA--GKWK--EKNWFLCDRYLPYALGGGYVLSHLLVKFISEN 221 (319)
Q Consensus 161 L~~~~~~~~~~y~G~~~~~~~~~-r~--~k~~--~~~~~~~~~yP~y~~G~gYvlS~~~~~~L~~~ 221 (319)
++.... ...+..|.......+. +. ++.. ..... ....-+...|+..++++++++.+..-
T Consensus 102 ~~~~~~-~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 102 LAKWEE-GYDVVYGVRKNRKESWLKRLTSKLFYRLINKL-SGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHHhC-CCcEEEEEecCCcchHHHHHHHHHHHHHHHHH-cCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 776543 4456667643221110 00 0000 00100 11222356788899999999998653
No 50
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=90.59 E-value=6.5 Score=35.95 Aligned_cols=189 Identities=8% Similarity=0.034 Sum_probs=101.0
Q ss_pred EEEECCCCCHH-HHHHHHHHHhcc---ccCCcEEEEEEecccCchhhHH--------HHHHHHhcCCceeeCCccccCCc
Q psy10876 55 ILILTSSKNYI-RRKNIRDTWIKN---IEKYQVKYLFSIGNKENVVDVK--------LKEEIRRYDDILLLNQVPDEYSS 122 (319)
Q Consensus 55 i~V~S~~~~~~-~R~aIR~TW~~~---~~~~~v~~~FvlG~~~~~~~~~--------l~~E~~~~~DIi~~~df~Dsy~n 122 (319)
|+|++.-...+ -.+.++...... .....+++ |++..+.++.... +.+|....-.+.+ ...-.|
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~----~~r~~~ 77 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYY----RRRREN 77 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEE----EEcCCC
Confidence 67777776666 566777766421 01134666 8887766543311 2222222222332 222234
Q ss_pred hhHHHHHHHHHHHhc-cCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceec-cCcccc----c-cccc
Q psy10876 123 LSQKVLHSFKYIYEH-FDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRR-AGKWKE----K-NWFL 195 (319)
Q Consensus 123 lt~K~~~~l~w~~~~-~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r-~~k~~~----~-~~~~ 195 (319)
.-.|+-..-...... .+++|++-.|-|+.+.++-|.+.+..... .+. +|-+........ ++-+.. . ..|.
T Consensus 78 ~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~-~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 78 TGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEA-NPR--AGIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-CCC--EEEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 445655544444322 37899999999999999999999887632 122 233322111111 111100 0 0000
Q ss_pred -----c-C---CCCCcccCCceeecHHHHHHHHHhc-----CcC-CCCCcChHHHHHHHHhCCCcEeecCC
Q psy10876 196 -----C-D---RYLPYALGGGYVLSHLLVKFISENS-----HML-SSYISEDVSVGVWLSALDITRYHDVR 251 (319)
Q Consensus 196 -----~-~---~yP~y~~G~gYvlS~~~~~~L~~~~-----~~~-~~~~~EDv~vG~~l~~lgI~~~~~~~ 251 (319)
. . .--.+|.|.+.++.+++++.+..-. ... ...-.||..+|..+...|-+..-.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 155 PVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred HHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 0 0 0112566999999999988753221 111 22347999999999988866554443
No 51
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=89.84 E-value=13 Score=34.16 Aligned_cols=163 Identities=12% Similarity=-0.018 Sum_probs=90.6
Q ss_pred CCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCc-cccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHH
Q psy10876 80 KYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQV-PDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNII 158 (319)
Q Consensus 80 ~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df-~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~ 158 (319)
...++++++-+.+.....+.|.+..+.++-+..+... .+..-+. -.+..-..+.++.++++..|.|+++.++.+.
T Consensus 32 ~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~----a~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSR----AKARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCH----HHHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 4567777766665543325666666666666212211 1112232 2344455556689999999999999999999
Q ss_pred HHHh---hcCCCCcccEEEEecCCCcee----cc-C--cccc--ccccc---cCCCC-CcccCCceeecHHHHHHHHHhc
Q psy10876 159 HELE---NKFHYEKKLYWGFFDGRARVR----RA-G--KWKE--KNWFL---CDRYL-PYALGGGYVLSHLLVKFISENS 222 (319)
Q Consensus 159 ~~L~---~~~~~~~~~y~G~~~~~~~~~----r~-~--k~~~--~~~~~---~~~yP-~y~~G~gYvlS~~~~~~L~~~~ 222 (319)
+.+. ........++++-+....... .+ . .|.. .+... .+.+. ....|++.+++++.-.++.--.
T Consensus 108 ~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfD 187 (281)
T PF10111_consen 108 KLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFD 187 (281)
T ss_pred HHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCC
Confidence 9988 433212233333321111110 00 0 0110 00010 11111 1235699999999988886544
Q ss_pred CcCCCCCcChHHHHHHHHhCCCcE
Q psy10876 223 HMLSSYISEDVSVGVWLSALDITR 246 (319)
Q Consensus 223 ~~~~~~~~EDv~vG~~l~~lgI~~ 246 (319)
........||.-++.=|.+.|...
T Consensus 188 E~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 188 ERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred ccccCCCcchHHHHHHHHHcCCcE
Confidence 444556799999987777776543
No 52
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=89.46 E-value=6.6 Score=35.81 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=61.9
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCC-cccEEEE-ecCCCcee-----ccCcccccccccc----C
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYE-KKLYWGF-FDGRARVR-----RAGKWKEKNWFLC----D 197 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~-~~~y~G~-~~~~~~~~-----r~~k~~~~~~~~~----~ 197 (319)
.+++++.+ .+++|++..|||+.+..+.|...++...... .-.++|- +....... +...+........ .
T Consensus 64 ~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (281)
T TIGR01556 64 QGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTP 142 (281)
T ss_pred HHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCc
Confidence 45666643 2689999999999999888777776544211 1222332 11111000 0000000111000 0
Q ss_pred CCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEe
Q psy10876 198 RYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRY 247 (319)
Q Consensus 198 ~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~ 247 (319)
.-..++.++|.++++++++++---... -++..||+-+..=+.+.|.+..
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~-~fi~~~D~e~~~R~~~~G~~i~ 191 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEE-LFIDHVDTEWSLRAQNYGIPLY 191 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHh-hcccchHHHHHHHHHHCCCEEE
Confidence 112345567778999999987431111 1345689988766667675443
No 53
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=88.97 E-value=26 Score=37.82 Aligned_cols=120 Identities=11% Similarity=0.005 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhc--CCCCcccEEEEec--CCCce-ecc-Ccc--ccc--c-
Q psy10876 124 SQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENK--FHYEKKLYWGFFD--GRARV-RRA-GKW--KEK--N- 192 (319)
Q Consensus 124 t~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~--~~~~~~~y~G~~~--~~~~~-~r~-~k~--~~~--~- 192 (319)
..|.- .+..+.++.+.+|++..|.|+.+..+-|...+... ++ +-. .++... -+..| .++ +.. ... +
T Consensus 325 ~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP-~Vg-lVQtp~~f~n~dp~~rnl~~~~~~~~e~~~ 401 (852)
T PRK11498 325 HAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDK-KLA-MMQTPHHFFSPDPFERNLGRFRKTPNEGTL 401 (852)
T ss_pred cchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCC-CeE-EEEcceeccCCchHHHhhHHHhhcccchhH
Confidence 34543 56666667789999999999999988888766543 22 111 122110 01111 111 000 000 0
Q ss_pred ccc----c-C-CCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEeec
Q psy10876 193 WFL----C-D-RYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHD 249 (319)
Q Consensus 193 ~~~----~-~-~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~~~ 249 (319)
.|. . + .--.++.|++.++.+++++++---.. ....||..++.-+.+.|-+....
T Consensus 402 fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~---~titED~dlslRL~~~Gyrv~yl 461 (852)
T PRK11498 402 FYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAV---ETVTEDAHTSLRLHRRGYTSAYM 461 (852)
T ss_pred HHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCC---CccCccHHHHHHHHHcCCEEEEE
Confidence 010 0 0 01245789999999999999843221 23479999999999888765543
No 54
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=88.25 E-value=10 Score=29.43 Aligned_cols=85 Identities=14% Similarity=-0.026 Sum_probs=51.2
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccCCCCCcccCCce
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGY 208 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~yP~y~~G~gY 208 (319)
.++..+.+..+.+|++.+|+|..+.++.+...+............+.. +++
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------------~~~ 117 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP-----------------------------GNL 117 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc-----------------------------chh
Confidence 344444445579999999999999988888764433220111111110 778
Q ss_pred eecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCC
Q psy10876 209 VLSHLLVKFISENSHMLSSYISEDVSVGVWLSALD 243 (319)
Q Consensus 209 vlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lg 243 (319)
++++++.+.+....... ....||..++.-+...|
T Consensus 118 ~~~~~~~~~~~~~~~~~-~~~~ed~~~~~~~~~~g 151 (156)
T cd00761 118 LFRRELLEEIGGFDEAL-LSGEEDDDFLLRLLRGG 151 (156)
T ss_pred eeeHHHHHHhCCcchHh-cCCcchHHHHHHHHhhc
Confidence 89999888775432211 11267877776655543
No 55
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=87.70 E-value=4.9 Score=33.54 Aligned_cols=132 Identities=8% Similarity=-0.009 Sum_probs=69.8
Q ss_pred cEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHHH
Q psy10876 82 QVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHEL 161 (319)
Q Consensus 82 ~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L 161 (319)
..+++.+-..+.+...+.+++..+++..+..+. ..... +. -.++....+....+|++..|+|..+.++.|.+++
T Consensus 28 ~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~-~~~n~-G~----~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~ 101 (185)
T cd04179 28 DYEIIVVDDGSTDGTAEIARELAARVPRVRVIR-LSRNF-GK----GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLL 101 (185)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEE-ccCCC-Cc----cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 346655555544433345555455565543221 22222 11 2444444555556999999999999998888888
Q ss_pred hhcCCCCcccEEEEecCCCcee-cc--Cccc---cccc--cccCCCCCcccCCceeecHHHHHHHH
Q psy10876 162 ENKFHYEKKLYWGFFDGRARVR-RA--GKWK---EKNW--FLCDRYLPYALGGGYVLSHLLVKFIS 219 (319)
Q Consensus 162 ~~~~~~~~~~y~G~~~~~~~~~-r~--~k~~---~~~~--~~~~~yP~y~~G~gYvlS~~~~~~L~ 219 (319)
.........+..|......... .. .++. .... .....-.....|+.+++++++++.+.
T Consensus 102 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 102 EKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8632224566777643211100 00 0000 0000 00111122356777899999999985
No 56
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=86.32 E-value=19 Score=34.08 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=70.5
Q ss_pred CcEEEEEEecccCchhhHHHHHHHHhcCC-ceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHH
Q psy10876 81 YQVKYLFSIGNKENVVDVKLKEEIRRYDD-ILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIH 159 (319)
Q Consensus 81 ~~v~~~FvlG~~~~~~~~~l~~E~~~~~D-Ii~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~ 159 (319)
...+++++-+.+.|.+.+.+++..+.+++ ++.+ ....++ ... .+++-..++++.+|++.+|.|.-.+++.+.+
T Consensus 37 ~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i-~~~~n~-G~~----~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~ 110 (325)
T PRK10714 37 KEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAI-LLNRNY-GQH----SAIMAGFSHVTGDLIITLDADLQNPPEEIPR 110 (325)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEE-EeCCCC-CHH----HHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Confidence 35788888877766554444433344444 3322 112221 111 2333444455789999999999999999999
Q ss_pred HHhhcCCCCcccEEEEecCC-Cceecc--Ccccc--ccccccCCCCCcccCCce-eecHHHHHHHHH
Q psy10876 160 ELENKFHYEKKLYWGFFDGR-ARVRRA--GKWKE--KNWFLCDRYLPYALGGGY-VLSHLLVKFISE 220 (319)
Q Consensus 160 ~L~~~~~~~~~~y~G~~~~~-~~~~r~--~k~~~--~~~~~~~~yP~y~~G~gY-vlS~~~~~~L~~ 220 (319)
+++.... ..++..|..... ..+.|. ++.+. -....+..++.. ++|| ++++++++.+..
T Consensus 111 l~~~~~~-~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~--~~gfr~~~r~~~~~l~~ 174 (325)
T PRK10714 111 LVAKADE-GYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDY--GCMLRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHh-hCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCC--CcCeEEEcHHHHHHHHH
Confidence 8887653 334555543221 111111 11100 011112334333 3344 899999999864
No 57
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=86.18 E-value=32 Score=36.52 Aligned_cols=192 Identities=8% Similarity=0.026 Sum_probs=104.7
Q ss_pred CCCCeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhh-HHHHHHHHhcCCceeeCCccccCCchhH
Q psy10876 47 LKHSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVD-VKLKEEIRRYDDILLLNQVPDEYSSLSQ 125 (319)
Q Consensus 47 ~~~~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~-~~l~~E~~~~~DIi~~~df~Dsy~nlt~ 125 (319)
.++.+.+-|+|+..-+...-.+.|...=.+. .-.+.+++++.. ++++.+ +.+++-.++|+++..+.. .. .+.+-
T Consensus 59 ~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~l-dYP~~eI~vi~~-~nD~~T~~~~~~l~~~~p~~~~v~~-~~--~g~~g 133 (727)
T PRK11234 59 KPDEKPLAIMVPAWNETGVIGNMAELAATTL-DYENYHIFVGTY-PNDPATQADVDAVCARFPNVHKVVC-AR--PGPTS 133 (727)
T ss_pred cCCCCCEEEEEecCcchhhHHHHHHHHHHhC-CCCCeEEEEEec-CCChhHHHHHHHHHHHCCCcEEEEe-CC--CCCCC
Confidence 4455677788877655555455555432121 122356666554 333333 555555667887532211 11 12234
Q ss_pred HHHHHHHHHHhcc---------CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceecc---Cccccccc
Q psy10876 126 KVLHSFKYIYEHF---------DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRA---GKWKEKNW 193 (319)
Q Consensus 126 K~~~~l~w~~~~~---------~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~---~k~~~~~~ 193 (319)
|. .+++|+...+ +++.++..|-|+.|.++.|. .+..... .....-+-.. ...+.++ ++-+..++
T Consensus 134 Ka-~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~-~~~~VQ~p~~-p~~~~~~~~~~~~~~~EF 209 (727)
T PRK11234 134 KA-DCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVE-RKDLIQIPVY-PFEREWTHFTSGTYIDEF 209 (727)
T ss_pred HH-HHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcC-CCCeEeeccc-CCCccHHHHHHHHHHHHH
Confidence 54 3556655543 34567779999999999997 4444332 2222222111 1011111 11111111
Q ss_pred c----c----cCC--CCCcccCCceeecHHHHHHHHHhc---CcCCCCCcChHHHHHHHHhCCCcEe
Q psy10876 194 F----L----CDR--YLPYALGGGYVLSHLLVKFISENS---HMLSSYISEDVSVGVWLSALDITRY 247 (319)
Q Consensus 194 ~----~----~~~--yP~y~~G~gYvlS~~~~~~L~~~~---~~~~~~~~EDv~vG~~l~~lgI~~~ 247 (319)
. . ... -+-.++|.|+.+||.+++.+.+.. ......--||.-+|.-+...|.+..
T Consensus 210 a~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~ 276 (727)
T PRK11234 210 AELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREI 276 (727)
T ss_pred HHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEE
Confidence 0 0 011 234578999999999887777764 3345566899999999999887754
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=86.05 E-value=14 Score=31.93 Aligned_cols=161 Identities=12% Similarity=0.025 Sum_probs=88.1
Q ss_pred CcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHHHH
Q psy10876 81 YQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHE 160 (319)
Q Consensus 81 ~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~ 160 (319)
...+++.+-+.+.+.+.+.+++..++++..+.+-....+ .... .++....+.+..+|++.+|+|....++.+.++
T Consensus 29 ~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n-~G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 29 FSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKN-RGKG----GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccC-CCcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 356777776666655445555556667664211011111 1221 33444444556799999999999999999988
Q ss_pred HhhcCCCCcccEEEEecCCCc---eeccCccc---ccc----ccccCCCCCc--ccCCceeecHHHHHHHHHhcCcCCCC
Q psy10876 161 LENKFHYEKKLYWGFFDGRAR---VRRAGKWK---EKN----WFLCDRYLPY--ALGGGYVLSHLLVKFISENSHMLSSY 228 (319)
Q Consensus 161 L~~~~~~~~~~y~G~~~~~~~---~~r~~k~~---~~~----~~~~~~yP~y--~~G~gYvlS~~~~~~L~~~~~~~~~~ 228 (319)
++........+.+|....... ..+. |. .+. +...-.-+++ ...+..++++++++.+..... ...
T Consensus 104 ~~~~~~~~~~~v~g~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~r~~~~~~~~~~~-~~~- 179 (211)
T cd04188 104 EEALKTSGYDIAIGSRAHLASAAVVKRS--WLRNLLGRGFNFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLH-LER- 179 (211)
T ss_pred HHHHhccCCcEEEEEeeccCCccccccc--HHHHHHHHHHHHHHHHHcCCCCcccccCceeEcHHHHHHHHhhhh-ccc-
Confidence 887322145667776432111 1111 10 000 0000011112 234568999999999874321 222
Q ss_pred CcChHHHHHHHHhCCCcEeecC
Q psy10876 229 ISEDVSVGVWLSALDITRYHDV 250 (319)
Q Consensus 229 ~~EDv~vG~~l~~lgI~~~~~~ 250 (319)
..+|.-+..-+.+.|.+....|
T Consensus 180 ~~~d~el~~r~~~~g~~~~~vp 201 (211)
T cd04188 180 WAFDVELLVLARRLGYPIEEVP 201 (211)
T ss_pred eEeeHHHHHHHHHcCCeEEEcC
Confidence 2468877777777787665555
No 59
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=85.07 E-value=25 Score=30.69 Aligned_cols=111 Identities=7% Similarity=-0.085 Sum_probs=60.7
Q ss_pred HHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCcccc-----c-c-ccc-------
Q psy10876 130 SFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKE-----K-N-WFL------- 195 (319)
Q Consensus 130 ~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~-----~-~-~~~------- 195 (319)
++....+..+.+|++.+|.|+.+.++.|...........-....|.... ...+..|.. . . .+.
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGH---INANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceee---EcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 4555666668999999999999999988885544332011122232210 000111110 0 0 000
Q ss_pred -cCCCCCcccCCceeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcEe
Q psy10876 196 -CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITRY 247 (319)
Q Consensus 196 -~~~yP~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~~ 247 (319)
...+ ..+.|++-++.+++++++---. .....||+.++.-+...|.+..
T Consensus 155 ~~~~~-~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G~~~~ 203 (232)
T cd06437 155 STGLF-FNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKGWKFV 203 (232)
T ss_pred hcCCe-EEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCCCeEE
Confidence 0111 1235666678888888763211 1235799999988877775544
No 60
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.48 E-value=25 Score=30.14 Aligned_cols=110 Identities=15% Similarity=-0.060 Sum_probs=60.3
Q ss_pred HHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCC-CceeccCcccccccc-ccC-CCCCcccCCc
Q psy10876 131 FKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGR-ARVRRAGKWKEKNWF-LCD-RYLPYALGGG 207 (319)
Q Consensus 131 l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~-~~~~r~~k~~~~~~~-~~~-~yP~y~~G~g 207 (319)
+....+.++.+|++.+|+|..+....+.+.+..... .....|..... ........+....+. ... ...+ .++.|
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 140 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRA--DGAVAGAFRLRFDDPGPRLRLLELGANLRSRLFGLP-YGDQG 140 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhc--CCcEEEEEEeeecCCccchhhhhhcccceecccCCC-cCCce
Confidence 334444557899999999999998888877665543 23333432110 000000000000000 000 1111 24668
Q ss_pred eeecHHHHHHHHHhcCcCCCCCcChHHHHHHHHhCCCcE
Q psy10876 208 YVLSHLLVKFISENSHMLSSYISEDVSVGVWLSALDITR 246 (319)
Q Consensus 208 YvlS~~~~~~L~~~~~~~~~~~~EDv~vG~~l~~lgI~~ 246 (319)
.++++++.+++..-. ..+..||.-++.=+.+.|...
T Consensus 141 ~~~r~~~~~~~G~fd---~~~~~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 141 LFIRRELFEELGGFP---ELPLMEDVELVRRLRRRGRPA 176 (221)
T ss_pred EEEEHHHHHHhCCCC---ccccccHHHHHHHHHhCCCEE
Confidence 899999888774322 223789999987777777543
No 61
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=81.05 E-value=37 Score=32.49 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=47.8
Q ss_pred HHHHHHhccCeeEEEEecCCeEEehH---HHHHHHhhcCCCCcccEEEEecCCCceeccCccccccccccCC-CCCcccC
Q psy10876 130 SFKYIYEHFDFQYLLKCDDDTFVRVP---NIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLCDR-YLPYALG 205 (319)
Q Consensus 130 ~l~w~~~~~~~~~vlk~DDD~fVn~~---~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~~~~~~~~~~-yP~y~~G 205 (319)
++.|+.+..++++++.+|||..+.++ -+.+.|..+.. ++.++ ++.+... +++......-+... .-.|+.|
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~-D~~v~--~ISa~Nd---nG~~~~~~~~~~~lyrs~ff~g 161 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEE-DPSLW--CISAWND---NGKEHFVDDTPSLLYRTDFFPG 161 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhc-CCCEE--EEEeecc---CCcccccCCCcceEEEecCCCc
Confidence 66666655579999999999999988 44455544443 33433 2221100 11111000001111 1247789
Q ss_pred CceeecHHHHHHH
Q psy10876 206 GGYVLSHLLVKFI 218 (319)
Q Consensus 206 ~gYvlS~~~~~~L 218 (319)
.|.++.+++-+.+
T Consensus 162 lGWml~r~~W~e~ 174 (334)
T cd02514 162 LGWMLTRKLWKEL 174 (334)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999888
No 62
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=80.11 E-value=24 Score=30.52 Aligned_cols=96 Identities=10% Similarity=0.047 Sum_probs=49.0
Q ss_pred HHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCC--ceeeCCccccCCchhHHHHHHHHHHHhccCeeEEE
Q psy10876 67 RKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDD--ILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLL 144 (319)
Q Consensus 67 R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~D--Ii~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vl 144 (319)
++.+..--.+. ....++++.+-..+.+.+.+.+++-.+++.+ +..+-.....-.|.. .-.+.....+..+.+|++
T Consensus 13 ~~~l~sl~~q~-~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~a~N~g~~~a~gd~i~ 89 (219)
T cd06913 13 DECLESVLQQD-FEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKG--VGYAKNQAIAQSSGRYLC 89 (219)
T ss_pred HHHHHHHHhCC-CCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCcc--HHHHHHHHHHhcCCCEEE
Confidence 44444444332 1224677776555544333334433444444 221100011111111 112334444555789999
Q ss_pred EecCCeEEehHHHHHHHhhcC
Q psy10876 145 KCDDDTFVRVPNIIHELENKF 165 (319)
Q Consensus 145 k~DDD~fVn~~~L~~~L~~~~ 165 (319)
.+|+|..+.++.+...+....
T Consensus 90 ~lD~D~~~~~~~l~~~~~~~~ 110 (219)
T cd06913 90 FLDSDDVMMPQRIRLQYEAAL 110 (219)
T ss_pred EECCCccCChhHHHHHHHHHH
Confidence 999999999988877665553
No 63
>PRK10073 putative glycosyl transferase; Provisional
Probab=72.57 E-value=82 Score=29.75 Aligned_cols=105 Identities=11% Similarity=-0.037 Sum_probs=57.3
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHH
Q psy10876 51 YFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHS 130 (319)
Q Consensus 51 ~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~ 130 (319)
+.+-|+|++.-....-++.+..-=.+. ..+++++.+-..+.+.+.+.+++-.++++.|.++. .+ |.. .-.+
T Consensus 6 p~vSVIIP~yN~~~~L~~~l~Sl~~Qt--~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~--~~---n~G--~~~a 76 (328)
T PRK10073 6 PKLSIIIPLYNAGKDFRAFMESLIAQT--WTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLH--QA---NAG--VSVA 76 (328)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEE--CC---CCC--hHHH
Confidence 345566665433333344443332222 23567777665555433333333344555554331 11 211 1233
Q ss_pred HHHHHhccCeeEEEEecCCeEEehHHHHHHHhhc
Q psy10876 131 FKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENK 164 (319)
Q Consensus 131 l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~ 164 (319)
.....+.++.+|++.+|+|-++.++.+...++..
T Consensus 77 rN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~ 110 (328)
T PRK10073 77 RNTGLAVATGKYVAFPDADDVVYPTMYETLMTMA 110 (328)
T ss_pred HHHHHHhCCCCEEEEECCCCccChhHHHHHHHHH
Confidence 4445556688999999999999998877777654
No 64
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.16 E-value=64 Score=33.01 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=79.7
Q ss_pred CCCeeEEEEEECCCCCHHHHH-HHHHHHhccc---cCCcEEEEEEecccCchhh--------HHHHHHHHhcCCceeeCC
Q psy10876 48 KHSYFIVILILTSSKNYIRRK-NIRDTWIKNI---EKYQVKYLFSIGNKENVVD--------VKLKEEIRRYDDILLLNQ 115 (319)
Q Consensus 48 ~~~~~lli~V~S~~~~~~~R~-aIR~TW~~~~---~~~~v~~~FvlG~~~~~~~--------~~l~~E~~~~~DIi~~~d 115 (319)
+...+--|++++.-+...|-- .+|.||.+-. ...... +||+..+.+++. .++.+|..-++.|..
T Consensus 141 p~~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD-~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifY--- 216 (736)
T COG2943 141 PDLHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFD-FFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFY--- 216 (736)
T ss_pred CcccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccce-EEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceee---
Confidence 344446677777777776654 6888888765 222233 488888877543 456677777777662
Q ss_pred ccccCCchhHHHHHHHHHHHhcc-CeeEEEEecCCeEEehHHHHHHHhhcC
Q psy10876 116 VPDEYSSLSQKVLHSFKYIYEHF-DFQYLLKCDDDTFVRVPNIIHELENKF 165 (319)
Q Consensus 116 f~Dsy~nlt~K~~~~l~w~~~~~-~~~~vlk~DDD~fVn~~~L~~~L~~~~ 165 (319)
.--.+|.-+|.=..-.|...-- .++|.+-.|-|.....+.+++..+..+
T Consensus 217 -RrRr~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME 266 (736)
T COG2943 217 -RRRRRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLME 266 (736)
T ss_pred -ehHhhhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHh
Confidence 2344677888888888876443 899999999999999998888776654
No 65
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=62.82 E-value=11 Score=25.91 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=27.7
Q ss_pred cceeechhhHHHHHHHHHHHHHHhhhcccccccc
Q psy10876 2 KLRLIKYKFLWILFSFILGCTITLFYISKVDNIS 35 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (319)
|+.|+-|.+..++|.+++.+++...|....++.+
T Consensus 3 QmsPm~W~~l~~~f~~~~~~~~~~~~~~~~~~~~ 36 (53)
T MTH00260 3 HLSPMSWLTAMIIFWFILLIFASSMWWSQSPKFP 36 (53)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 7889999999999999988888888877655443
No 66
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=62.46 E-value=92 Score=26.01 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=51.1
Q ss_pred HHHHHHHHh-ccCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccc---------cccccc--
Q psy10876 128 LHSFKYIYE-HFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWK---------EKNWFL-- 195 (319)
Q Consensus 128 ~~~l~w~~~-~~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~---------~~~~~~-- 195 (319)
-.+++++.+ ..+.+|++.+|.|+.+.++.|..++..... ...+..|...... +. ..|. ...+..
T Consensus 69 n~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~v~g~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~ 144 (183)
T cd06438 69 DFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA-GARVVQAYYNSKN-PD--DSWITRLYAFAFLVFNRLRPL 144 (183)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCeeEEEEeeeC-Cc--cCHHHHHHHHHHHHHHHHHHH
Confidence 344555432 126899999999999999888888877654 3445566543211 11 1111 000000
Q ss_pred -c--CCCCCcccCCceeecHHHHHH
Q psy10876 196 -C--DRYLPYALGGGYVLSHLLVKF 217 (319)
Q Consensus 196 -~--~~yP~y~~G~gYvlS~~~~~~ 217 (319)
. -.-+.++.|++++++++++++
T Consensus 145 ~~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 145 GRSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHHcCCCeeecCchhhhHHHHHHh
Confidence 0 122336789999999999988
No 67
>PRK10018 putative glycosyl transferase; Provisional
Probab=55.79 E-value=1.5e+02 Score=27.28 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=57.6
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCC--ceeeCCccccCCchhHHH
Q psy10876 50 SYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDD--ILLLNQVPDEYSSLSQKV 127 (319)
Q Consensus 50 ~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~D--Ii~~~df~Dsy~nlt~K~ 127 (319)
.+.+-|+|.+.-......++|+.-..+. ...++++.+-+.+.+ .+.+++-.+.++| |..+ ..-.|.- .
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt--~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i----~~~~n~G--~ 73 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQD--YSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYI----HNDINSG--A 73 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCC--CCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEE----ECCCCCC--H
Confidence 3455566666543333344555544443 234677766655442 1223333344454 3222 1112211 1
Q ss_pred HHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcC
Q psy10876 128 LHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKF 165 (319)
Q Consensus 128 ~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~ 165 (319)
-.+.....+.++.+|++..|+|..+.++.|...+....
T Consensus 74 ~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~ 111 (279)
T PRK10018 74 CAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQ 111 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHH
Confidence 22344445556899999999999999998887776543
No 68
>MTH00186 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=53.51 E-value=21 Score=24.22 Aligned_cols=32 Identities=9% Similarity=0.272 Sum_probs=24.9
Q ss_pred cceeechhhHHHHHHHHHHHHHHhhhcccccc
Q psy10876 2 KLRLIKYKFLWILFSFILGCTITLFYISKVDN 33 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (319)
|+.|+.|.+..+++.+++++++...+....++
T Consensus 3 Qm~P~~W~~l~~~~~~~~~~~~~~~~~~~~~~ 34 (52)
T MTH00186 3 QLSPLFWALLFIMIWLLIFLAMSMTWWLQNPK 34 (52)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 78999999998888888887777776655433
No 69
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=52.84 E-value=9.2 Score=34.25 Aligned_cols=106 Identities=13% Similarity=0.038 Sum_probs=61.4
Q ss_pred CeeEEEEecCCeEEehHHHHHHHhhcCCCCcc--cEEEEecCCCceeccCccc--------ccc-----ccccCCCCCcc
Q psy10876 139 DFQYLLKCDDDTFVRVPNIIHELENKFHYEKK--LYWGFFDGRARVRRAGKWK--------EKN-----WFLCDRYLPYA 203 (319)
Q Consensus 139 ~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~--~y~G~~~~~~~~~r~~k~~--------~~~-----~~~~~~yP~y~ 203 (319)
+.+|++.+|.|+.+..+.|...+..... .+. ...|....... ..+.+. ... +...-.+...+
T Consensus 73 ~~e~i~~~DaD~~~~~~~l~~l~~~~~~-~p~vg~v~g~~~~~~~--~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~ 149 (244)
T cd04190 73 DPEFILLVDADTKFDPDSIVQLYKAMDK-DPEIGGVCGEIHPMGK--KQGPLVMYQVFEYAISHWLDKAFESVFGFVTCL 149 (244)
T ss_pred CCCEEEEECCCCcCCHhHHHHHHHHHHh-CCCEEEEEeeeEEcCC--cchhHHHhHheehhhhhhhcccHHHcCCceEEC
Confidence 8999999999999999998888876532 122 23344321100 001000 000 00011334567
Q ss_pred cCCceeecHHHHHHHHHhcCc----------C-------CCCCcChHHHHHHHHhCCCcEe
Q psy10876 204 LGGGYVLSHLLVKFISENSHM----------L-------SSYISEDVSVGVWLSALDITRY 247 (319)
Q Consensus 204 ~G~gYvlS~~~~~~L~~~~~~----------~-------~~~~~EDv~vG~~l~~lgI~~~ 247 (319)
.|++.++.+++++.+...... + ...-.||..++..+...|.+..
T Consensus 150 ~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~ 210 (244)
T cd04190 150 PGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRK 210 (244)
T ss_pred CCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccE
Confidence 899999999998876322110 0 1124689999888877675543
No 70
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=51.12 E-value=57 Score=24.36 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=37.3
Q ss_pred EEEEEEecccCchhhHHHHHHHHhcCCceeeCCccccCCchhHHHHHHHHHHHhc-cCeeEEEEecCCeEEehHH
Q psy10876 83 VKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEH-FDFQYLLKCDDDTFVRVPN 156 (319)
Q Consensus 83 v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~-~~~~~vlk~DDD~fVn~~~ 156 (319)
+.-++++-..++....++.++ +.++-.. ...+.+..-... ....+.+.+. .+++|++.+|-|-|+.++.
T Consensus 19 ~d~i~i~d~~s~D~t~~~l~~---~~~v~i~-~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 19 VDHIYIYDDGSTDGTREILRA---LPGVGII-RWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCEEEEEECCCCccHHHHHHh---CCCcEEE-EeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 444455544333333333333 3444322 345555443333 3344444444 3899999999999998765
No 71
>MTH00147 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=48.30 E-value=24 Score=24.00 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=27.2
Q ss_pred cceeechhhHHHHHHHHHHHHHHhhhcccccccc
Q psy10876 2 KLRLIKYKFLWILFSFILGCTITLFYISKVDNIS 35 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (319)
|+.|+.|.+..+++.+++.++....|.+..++-.
T Consensus 3 QmsPm~W~~l~~~~~~~~~~~~~~~~~~~~~~~~ 36 (51)
T MTH00147 3 QLSPLNWIFLFILFWSAVIIVSVIIWWSTKNLYT 36 (51)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 7899999999999998888888887776655433
No 72
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=48.02 E-value=3.7e+02 Score=28.60 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=102.4
Q ss_pred CCCCeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhh-HHHHHHHHhcCCceeeCCccccCCchhH
Q psy10876 47 LKHSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVD-VKLKEEIRRYDDILLLNQVPDEYSSLSQ 125 (319)
Q Consensus 47 ~~~~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~-~~l~~E~~~~~DIi~~~df~Dsy~nlt~ 125 (319)
..+...+-|+|+-.-+..--.+.|+..=.+.. -.+. .+|++...++..+ +.+++-...|..+..+. ..+. ..+-
T Consensus 67 ~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~ld-Yp~~-~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~-~~~~--gp~g 141 (703)
T PRK15489 67 ERDEQPLAIMVPAWKEYDVIAKMIENMLATLD-YRRY-VIFVGTYPNDAETITEVERMRRRYKRLVRVE-VPHD--GPTC 141 (703)
T ss_pred ccCCCceEEEEeCCCcHHHHHHHHHHHHhcCC-CCCe-EEEEEecCCCccHHHHHHHHhccCCcEEEEE-cCCC--CCCC
Confidence 34455667777766555555556665432221 1122 3555443444444 55555555565433221 1221 2233
Q ss_pred HHHHHHHHHHhcc---------CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceecc--Ccccccc--
Q psy10876 126 KVLHSFKYIYEHF---------DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRA--GKWKEKN-- 192 (319)
Q Consensus 126 K~~~~l~w~~~~~---------~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~--~k~~~~~-- 192 (319)
|. .+++|+...+ .++.++-.|-|-.+.++.|..+ ....+ +.++.-|-+.+...+..+ ++.+..+
T Consensus 142 Ka-~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~-~~~~iQ~pV~~~~~~~~~~l~~~~~~Efa 218 (703)
T PRK15489 142 KA-DCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLP-RKDLVQLPVLSLERKWYEWVAGTYMDEFA 218 (703)
T ss_pred HH-HHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcC-CcceeeeeeccCCCccccHHHHHHHHHHH
Confidence 43 3455654432 2345899999999999999654 44443 334433323321111111 1222111
Q ss_pred -ccc------cCC-CCCcccCCceeecHHHHHHHHHhcCcCC---CCCcChHHHHHHHHhCCCcEee
Q psy10876 193 -WFL------CDR-YLPYALGGGYVLSHLLVKFISENSHMLS---SYISEDVSVGVWLSALDITRYH 248 (319)
Q Consensus 193 -~~~------~~~-yP~y~~G~gYvlS~~~~~~L~~~~~~~~---~~~~EDv~vG~~l~~lgI~~~~ 248 (319)
++- ... -|--.+|.|..+++++++.+.+.....+ ..--||.=+|.=+...|++..-
T Consensus 219 ~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f 285 (703)
T PRK15489 219 EWHQKDLVVRESLTGTVPSAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIF 285 (703)
T ss_pred HHhhhHHHHHHHcCCceeccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEE
Confidence 110 011 1223689999999999999877643222 2237999999989888877543
No 73
>PHA01631 hypothetical protein
Probab=45.45 E-value=82 Score=27.07 Aligned_cols=93 Identities=11% Similarity=0.234 Sum_probs=52.1
Q ss_pred hcCCceeeCCccccCCchhHHHHHHHHHHHhc---cCeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCce
Q psy10876 106 RYDDILLLNQVPDEYSSLSQKVLHSFKYIYEH---FDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARV 182 (319)
Q Consensus 106 ~~~DIi~~~df~Dsy~nlt~K~~~~l~w~~~~---~~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~ 182 (319)
-+.+|+... .... ...+..--++..+.++ -+-+.++.+|.|++|+.-. .. .+ +..++.=+. |
T Consensus 38 ~~~~Ii~~~-t~~e--~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~-~~~v~t~Ci-----P 102 (176)
T PHA01631 38 YQEKIIWIM-TNTE--IRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IP-NERVFTPCY-----W 102 (176)
T ss_pred cCCceEEec-ccch--hHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----cc-CCCccceee-----e
Confidence 366677532 1222 2233444455556554 3778889999999997543 11 11 112221111 1
Q ss_pred eccCccccccccccCCCCCcccCCceeecHHHHHHHHHh
Q psy10876 183 RRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLVKFISEN 221 (319)
Q Consensus 183 ~r~~k~~~~~~~~~~~yP~y~~G~gYvlS~~~~~~L~~~ 221 (319)
-+ .|| .+..-+||.|.-+++.++.+..|...
T Consensus 103 A~-~kp-------~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 103 LY-YDW-------ANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred ee-ecC-------CCcEEEEEccccEEeeHHHhHHHHHH
Confidence 11 111 23344799999999999999888765
No 74
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=45.43 E-value=1.9e+02 Score=26.86 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=55.8
Q ss_pred cCCcEEEEEEecccC--chhhHHHHHHH----------HhcCCceee-CCccccC------------CchhHHHHHHH-H
Q psy10876 79 EKYQVKYLFSIGNKE--NVVDVKLKEEI----------RRYDDILLL-NQVPDEY------------SSLSQKVLHSF-K 132 (319)
Q Consensus 79 ~~~~v~~~FvlG~~~--~~~~~~l~~E~----------~~~~DIi~~-~df~Dsy------------~nlt~K~~~~l-~ 132 (319)
....+.+-|+++.+. +...+.++++. ..|+.|.++ .||.+.- ...-++.++-. .
T Consensus 53 P~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 53 PHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred CchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 456789999999988 43334444333 235555432 4554421 01112222111 2
Q ss_pred HHHhcc---CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEe
Q psy10876 133 YIYEHF---DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFF 176 (319)
Q Consensus 133 w~~~~~---~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~ 176 (319)
|+..+. ..+|++-.|-|+.-.++.|++.|...+ ++++.=++
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~---kdIivPn~ 176 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD---KDIIVPNC 176 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC---CCEEccce
Confidence 333222 689999999999999999999887765 34444433
No 75
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=43.22 E-value=3.2e+02 Score=27.24 Aligned_cols=120 Identities=11% Similarity=0.076 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCce---eeCCccccCC---c----hhHHHHHHHHHHHhcc----CeeEEEEecCCeEEehHHHHHHHhh
Q psy10876 98 VKLKEEIRRYDDIL---LLNQVPDEYS---S----LSQKVLHSFKYIYEHF----DFQYLLKCDDDTFVRVPNIIHELEN 163 (319)
Q Consensus 98 ~~l~~E~~~~~DIi---~~~df~Dsy~---n----lt~K~~~~l~w~~~~~----~~~~vlk~DDD~fVn~~~L~~~L~~ 163 (319)
+...++.+.|+|-+ +.+++.+.-. + --+|.-.-++|+.++. +++.++.++||.-+-++=+.-+-..
T Consensus 136 ~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~ 215 (434)
T PF03071_consen 136 EEVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSAT 215 (434)
T ss_dssp HHHHHHHHGGGGGSEEEE-S--S-----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHH
T ss_pred HHHHHHHHHhhhhheeeecCCcCCceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHH
Confidence 34566777887643 2233322110 0 1134555666766554 6889999999999987655443333
Q ss_pred cC--CCCcccEEEEec-CCCceeccCccccccccccCCCCCcccCCceeecHHHHHHHHHh
Q psy10876 164 KF--HYEKKLYWGFFD-GRARVRRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLVKFISEN 221 (319)
Q Consensus 164 ~~--~~~~~~y~G~~~-~~~~~~r~~k~~~~~~~~~~~yP~y~~G~gYvlS~~~~~~L~~~ 221 (319)
.. ..++.+++=.-. .++...--..-.....|-. .|..|-|.+|++++-..|...
T Consensus 216 ~~ll~~D~sl~ciSawNdnG~~~~~~~~~~~~lyRs----dffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 216 LPLLENDPSLWCISAWNDNGKEHFVDDSRPSLLYRS----DFFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp HHHHHH-TTEEEEES--TT-BGGGS-TT-TT-EEEE----SS---SSEEEEHHHHHHHGGG
T ss_pred HHHHhcCCCeEEEEccccCCccccccCCCccceEec----ccCCchHHHhhHHHHHhhccc
Confidence 21 113345442211 1111100000000011212 256899999999999876543
No 76
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=41.70 E-value=1.4e+02 Score=27.97 Aligned_cols=176 Identities=14% Similarity=0.085 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHhccc-cCCcEEEEEEecccCchhhHHHHHHHHhcCCceeeCCc--cccCCchhHHHHHHHHHHHhccC
Q psy10876 63 NYIRRKNIRDTWIKNI-EKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQV--PDEYSSLSQKVLHSFKYIYEHFD 139 (319)
Q Consensus 63 ~~~~R~aIR~TW~~~~-~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~~~df--~Dsy~nlt~K~~~~l~w~~~~~~ 139 (319)
.-+.|+.-|..-...- ....+.++|+-|.+ .....|..=.....-++.+ ++ .+.+..-+.--..+..|..+.|+
T Consensus 18 ~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~--~~d~~i~~~i~~~~~~~yl-~~~s~~~F~s~~~c~n~ga~Ysh~~~~ 94 (346)
T COG4092 18 LTDSRQFSRTSAVKVFTSSDITMVICLRAHE--VMDRLIRSYIDPMPRVLYL-DFGSPEPFASETICANNGADYSHEKCE 94 (346)
T ss_pred hhHHHHHhhHhhhhhccccccEEEEEEecch--hHHHHHHHHhccccceEEE-ecCCCccccchhhhhhccchhhhcccc
Confidence 3455665554433322 33455555655442 1113333333333443434 33 34555556777788999999999
Q ss_pred eeEEEEecCCeEEehHHHHHHHhhcCC------CCcccEEEEecCCC---cee---ccCccccc--c-cc----ccCCC-
Q psy10876 140 FQYLLKCDDDTFVRVPNIIHELENKFH------YEKKLYWGFFDGRA---RVR---RAGKWKEK--N-WF----LCDRY- 199 (319)
Q Consensus 140 ~~~vlk~DDD~fVn~~~L~~~L~~~~~------~~~~~y~G~~~~~~---~~~---r~~k~~~~--~-~~----~~~~y- 199 (319)
..+++..|-|+|...++..+.|.-... ....+.+--..-+. .+. .+-+|..- + .+ .++.|
T Consensus 95 Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~~~~~ff 174 (346)
T COG4092 95 SNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFRKEDNFF 174 (346)
T ss_pred ccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhCcccccc
Confidence 999999999999999999998843211 01122221111010 000 01122210 0 00 01222
Q ss_pred CCcccCCceeecHHHHHHHHHhcCcCCCCCcChHH-HHHHHHhC
Q psy10876 200 LPYALGGGYVLSHLLVKFISENSHMLSSYISEDVS-VGVWLSAL 242 (319)
Q Consensus 200 P~y~~G~gYvlS~~~~~~L~~~~~~~~~~~~EDv~-vG~~l~~l 242 (319)
-|. ..+-+++.++.-.+..-........+-||.- +.++...+
T Consensus 175 ~~~-~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~~ 217 (346)
T COG4092 175 IAP-YTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLYI 217 (346)
T ss_pred ccc-ccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHHH
Confidence 222 2345788888877766655556677788884 46555444
No 77
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.32 E-value=20 Score=29.14 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhcccccc
Q psy10876 7 KYKFLWILFSFILGCTITLFYISKVDN 33 (319)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (319)
||.|..++.+++|++++..+.++..++
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555443
No 78
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=36.53 E-value=46 Score=20.25 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=21.0
Q ss_pred cceeechhhHHHHHHHHHHHHHHhhhcc
Q psy10876 2 KLRLIKYKFLWILFSFILGCTITLFYIS 29 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (319)
|+.|+.|.+....|.+++.......|.+
T Consensus 3 QmsPm~W~~l~~~f~~~~~~~~~~~~f~ 30 (32)
T MTH00158 3 QMSPMNWLILFILFLITFILFNILNYFI 30 (32)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6788888888888887777776665544
No 79
>KOG2547|consensus
Probab=34.48 E-value=1.8e+02 Score=28.51 Aligned_cols=81 Identities=15% Similarity=0.324 Sum_probs=54.1
Q ss_pred cEEEEEEecccCchhhHHHHHHHHhcCCc---eeeCCccccCCchhHHHHHHHHHHHhccCeeEEEEecCCeEEehHHHH
Q psy10876 82 QVKYLFSIGNKENVVDVKLKEEIRRYDDI---LLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNII 158 (319)
Q Consensus 82 ~v~~~FvlG~~~~~~~~~l~~E~~~~~DI---i~~~df~Dsy~nlt~K~~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~ 158 (319)
..+++|.+..++|+..+.++.-.++|..+ ++++. ++. .+..|.-.++-= ++..++++++..|||+++.++.+.
T Consensus 114 ~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG-~~v--g~npKInN~mpg-y~~a~ydlvlisDsgI~m~pdtil 189 (431)
T KOG2547|consen 114 KYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGG-EKV--GLNPKINNMMPG-YRAAKYDLVLISDSGIFMKPDTIL 189 (431)
T ss_pred ceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcc-ccc--ccChhhhccCHH-HHHhcCCEEEEecCCeeecCchHH
Confidence 56889999888776656666667778754 22332 222 333555443331 223367899999999999999999
Q ss_pred HHHhhcCC
Q psy10876 159 HELENKFH 166 (319)
Q Consensus 159 ~~L~~~~~ 166 (319)
+.......
T Consensus 190 dm~t~M~s 197 (431)
T KOG2547|consen 190 DMATTMMS 197 (431)
T ss_pred HHHHhhhc
Confidence 98887653
No 80
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=31.35 E-value=3.2e+02 Score=22.98 Aligned_cols=76 Identities=8% Similarity=-0.134 Sum_probs=42.2
Q ss_pred eeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCceeccCccc----cccccc---------cCCCCCcccCC
Q psy10876 140 FQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWK----EKNWFL---------CDRYLPYALGG 206 (319)
Q Consensus 140 ~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~r~~k~~----~~~~~~---------~~~yP~y~~G~ 206 (319)
.+|++.+|.|..+.++.|..........+-....|.+.. ..++.+|. .-++.. ...-.-+++|.
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~ 166 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRM---YNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGN 166 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEE---ecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCe
Confidence 479999999999999998885554432011222222210 01122221 111110 00111235899
Q ss_pred ceeecHHHHHHH
Q psy10876 207 GYVLSHLLVKFI 218 (319)
Q Consensus 207 gYvlS~~~~~~L 218 (319)
|.++++++++.+
T Consensus 167 ~~~~r~~~l~~v 178 (191)
T cd06436 167 GQFMRLSALDGL 178 (191)
T ss_pred eEEEeHHHHHHh
Confidence 999999999988
No 81
>PF00895 ATP-synt_8: ATP synthase protein 8; InterPro: IPR001421 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from Metazoa. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit may have an analogous function in Metazoa. Subunit 8 differs in sequence between Metazoa, plants (IPR003319 from INTERPRO) and fungi (IPR009230 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=28.08 E-value=1.2e+02 Score=20.06 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=21.5
Q ss_pred cceeechhhHHHHHHHHHHHHHHhhhccc
Q psy10876 2 KLRLIKYKFLWILFSFILGCTITLFYISK 30 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (319)
|+.|+.|-+..+++.+++++++...+...
T Consensus 3 QL~P~~W~~~f~~~~~~l~~~~~~~~~~~ 31 (54)
T PF00895_consen 3 QLNPMPWFFLFLFFWLILLIIMILIYFFK 31 (54)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhce
Confidence 78888888888888877777766655443
No 82
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=27.13 E-value=5.1e+02 Score=24.37 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.6
Q ss_pred HHHhcc--CeeEEEEecCCeEEehH
Q psy10876 133 YIYEHF--DFQYLLKCDDDTFVRVP 155 (319)
Q Consensus 133 w~~~~~--~~~~vlk~DDD~fVn~~ 155 (319)
++.++| .++|++-.+||+.....
T Consensus 161 ~Lm~y~~~~~~YyL~LEDDVia~~~ 185 (297)
T PF04666_consen 161 FLMNYCQNLGDYYLQLEDDVIAAPG 185 (297)
T ss_pred HHHHHHHhcCCeEEEecCCeEechh
Confidence 344566 68899999999877664
No 83
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=22.19 E-value=6.4e+02 Score=23.46 Aligned_cols=120 Identities=8% Similarity=-0.049 Sum_probs=58.3
Q ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhccccCCcEEEEEEecccCchhhHHHHHHHHhcCCcee-eCC-ccccCCchhHH
Q psy10876 49 HSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILL-LNQ-VPDEYSSLSQK 126 (319)
Q Consensus 49 ~~~~lli~V~S~~~~~~~R~aIR~TW~~~~~~~~v~~~FvlG~~~~~~~~~l~~E~~~~~DIi~-~~d-f~Dsy~nlt~K 126 (319)
..+.+-|+|++.-+...-.+.|+.--.........+++++-..+.+.+. ++.++ ++..+. ... ....-.| .-|
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~-~ia~~---~~~~v~~~~~~~~~~~~n-~Gk 103 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATA-ERAAA---AGARVVSREEILPELPPR-PGK 103 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHH-HHHHH---hcchhhcchhhhhccccC-CCH
Confidence 5567777777765544444444433322100223466666555554332 22222 222110 000 0011112 123
Q ss_pred HHHHHHHHHhccCeeEEEEecCCeE-EehHHHHHHHhhc--CCCCcccEEEE
Q psy10876 127 VLHSFKYIYEHFDFQYLLKCDDDTF-VRVPNIIHELENK--FHYEKKLYWGF 175 (319)
Q Consensus 127 ~~~~l~w~~~~~~~~~vlk~DDD~f-Vn~~~L~~~L~~~--~~~~~~~y~G~ 175 (319)
.- ++.......+.+|++.+|.|.. ..++.+.+++... ++ .-.+..|.
T Consensus 104 g~-A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~-~~~~V~g~ 153 (306)
T PRK13915 104 GE-ALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDP-GVHLVKAF 153 (306)
T ss_pred HH-HHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCC-CceEEEEE
Confidence 22 2233334457899999999996 8888777777654 22 33455564
No 84
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=21.87 E-value=1.3e+02 Score=27.34 Aligned_cols=106 Identities=16% Similarity=0.302 Sum_probs=54.5
Q ss_pred CeeEEEEecCCeEEehHHHHHHHhhcCCCCcccEEEEecCCCcee-ccCccc-cccccccCCCCCcccCCceeecHHHHH
Q psy10876 139 DFQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVR-RAGKWK-EKNWFLCDRYLPYALGGGYVLSHLLVK 216 (319)
Q Consensus 139 ~~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~~~y~G~~~~~~~~~-r~~k~~-~~~~~~~~~yP~y~~G~gYvlS~~~~~ 216 (319)
..+-|+-+|||+.++.+.|...++.-.. .++-++|...+..... .+++|. .+++ ...| ...-.++-++.++-+.
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~-~pdrlVGf~~R~h~~~~~~~~~~Y~~~~--~~~y-SmvLt~aaf~h~~yl~ 150 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWRE-FPDRLVGFPPRSHSWDPSSGRWKYTSEW--SNEY-SMVLTGAAFYHRYYLE 150 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCC-STTSEEES-EEEEEEE-ETTEEEEE-SS--S--B-SEE-TTEEEEETHHHH
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHh-ChhheeCCccceeecCCCccccccccCC--CCcc-hhhhhhhHhhcchHHH
Confidence 7889999999999999999877766543 3445678642211111 123342 2111 1111 1234555666776655
Q ss_pred HHHHhcC-----cC-CCCCcChHHHHHHHHhC-CCcEee
Q psy10876 217 FISENSH-----ML-SSYISEDVSVGVWLSAL-DITRYH 248 (319)
Q Consensus 217 ~L~~~~~-----~~-~~~~~EDv~vG~~l~~l-gI~~~~ 248 (319)
.-..... .+ ....=||+.+-.++..+ |-.|+.
T Consensus 151 ~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs~~T~~pPi~ 189 (247)
T PF09258_consen 151 LYTHWLPASIREYVDEHFNCEDIAMNFLVSNLTGKPPIK 189 (247)
T ss_dssp HHHT-S-HHHHHHHHHHTS-HHHHHHHHHHHHHSS-SE-
T ss_pred HHhcCcHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCc
Confidence 3332111 01 24578999998877754 655543
No 85
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=21.58 E-value=1.9e+02 Score=25.32 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=29.0
Q ss_pred HHHHHHHhccCeeEEEEecCCeEEehHHHHHHHhhcC
Q psy10876 129 HSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKF 165 (319)
Q Consensus 129 ~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~~~~ 165 (319)
.+..++.+.+..+|++.+|+|..+..+.+...++...
T Consensus 61 ~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 61 AQRNFALELATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 4567777777788999999999998887776666544
No 86
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=21.47 E-value=3.2e+02 Score=23.88 Aligned_cols=94 Identities=10% Similarity=-0.006 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhccC----eeEEEEecCCeEEehHHHHHHHhhcCCCCc--ccEEEEecCCC-----ceeccCccccccc-
Q psy10876 126 KVLHSFKYIYEHFD----FQYLLKCDDDTFVRVPNIIHELENKFHYEK--KLYWGFFDGRA-----RVRRAGKWKEKNW- 193 (319)
Q Consensus 126 K~~~~l~w~~~~~~----~~~vlk~DDD~fVn~~~L~~~L~~~~~~~~--~~y~G~~~~~~-----~~~r~~k~~~~~~- 193 (319)
-+-.++.-+..+.. .+.++-+.+|++.+. .+.++|+....... .+.++...... .+..++.-.+.+.
T Consensus 85 Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~ 163 (248)
T PF00483_consen 85 GTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIV 163 (248)
T ss_dssp CHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEE
T ss_pred chhHHHHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEe
Confidence 34455555554442 346889999998887 66666665432111 23333322111 1111111111111
Q ss_pred -cccCCC-CCcccCCceeecHHHHHHHHH
Q psy10876 194 -FLCDRY-LPYALGGGYVLSHLLVKFISE 220 (319)
Q Consensus 194 -~~~~~y-P~y~~G~gYvlS~~~~~~L~~ 220 (319)
-|.... ..++.++.|+++.+++..+.+
T Consensus 164 EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 164 EKPDNPNASNLINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp ESCSSHSHSSEEEEEEEEEETHHHHHHHH
T ss_pred ccCcccccceeccCceEEEcchHHHHHhh
Confidence 111112 347788889999999998865
No 87
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=21.30 E-value=1.7e+02 Score=27.88 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=45.7
Q ss_pred hHHHHHHHH--HHHhcc--CeeEEEEecCCeEEehHH-HHHHHhhcCCCCcccEEEEe---cCC--CceeccCccccccc
Q psy10876 124 SQKVLHSFK--YIYEHF--DFQYLLKCDDDTFVRVPN-IIHELENKFHYEKKLYWGFF---DGR--ARVRRAGKWKEKNW 193 (319)
Q Consensus 124 t~K~~~~l~--w~~~~~--~~~~vlk~DDD~fVn~~~-L~~~L~~~~~~~~~~y~G~~---~~~--~~~~r~~k~~~~~~ 193 (319)
..+.+.-++ ...+.- ..+|++-++||+.++-.+ +...+..... .++.+=+. ..+ .+..-..- ..+..
T Consensus 97 ia~HlsLWes~~~~~~k~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~--n~idilQLre~~~~~~~~~~~~~~-~~~~~ 173 (323)
T PHA02688 97 IARHLSLWESYANADIKDKEDEYIVVVEDDNTLRDITTLHPIIKAMKE--KNIDILQLRETLHNNNVRTLLNQE-GNPAL 173 (323)
T ss_pred HHHHHHHHHhhccCCccccCCCeEEEEcCCCcccccHHHHHHHHHHHh--cCeEEEEeehhhhCCcccccccCC-CCcce
Confidence 455556666 322222 589999999999988532 2223333221 22222211 111 11100000 00110
Q ss_pred cccCCCCC-c-ccCCceeecHHHHHHHHHhc
Q psy10876 194 FLCDRYLP-Y-ALGGGYVLSHLLVKFISENS 222 (319)
Q Consensus 194 ~~~~~yP~-y-~~G~gYvlS~~~~~~L~~~~ 222 (319)
..||+ | .+=++|++....|.+|+...
T Consensus 174 ---~~Y~ggydvSLsAYIIr~~~a~kl~~~~ 201 (323)
T PHA02688 174 ---YSYTGGYDVSLSAYIIRVSTAKKLYDEI 201 (323)
T ss_pred ---EEecCCcceeeEEEEEeHHHHHHHHHHH
Confidence 12221 2 34488999999999999874
No 88
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=20.74 E-value=1.2e+02 Score=26.82 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHHHHHHHhccCeeEEEEecCCeEEehHHHHHHHh
Q psy10876 128 LHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELE 162 (319)
Q Consensus 128 ~~~l~w~~~~~~~~~vlk~DDD~fVn~~~L~~~L~ 162 (319)
-.++.-+.+..+++|++.+.||+++.-+++...+.
T Consensus 43 ~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il 77 (217)
T PF13712_consen 43 AAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDIL 77 (217)
T ss_dssp TTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHH
Confidence 45777777778999999999999997665444333
No 89
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=20.16 E-value=1.1e+02 Score=21.58 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhc
Q psy10876 8 YKFLWILFSFILGCTITLFYI 28 (319)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (319)
++..+++|++++++++.+.++
T Consensus 36 ~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 36 RKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788888887766666554
No 90
>PLN02893 Cellulose synthase-like protein
Probab=20.04 E-value=4.2e+02 Score=28.35 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.4
Q ss_pred CeeEEEEecCCeEEe-hHHHHHHH
Q psy10876 139 DFQYLLKCDDDTFVR-VPNIIHEL 161 (319)
Q Consensus 139 ~~~~vlk~DDD~fVn-~~~L~~~L 161 (319)
+++|++-.|=|+|+| ++.|.+.+
T Consensus 298 ngpfIl~lDcD~y~n~p~~l~~am 321 (734)
T PLN02893 298 NAPIILTLDCDMYSNDPQTPLRAL 321 (734)
T ss_pred CCCEEEEecCCcCCCchhHHHHHH
Confidence 899999999999986 45555544
Done!