RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10876
(319 letters)
>gnl|CDD|216686 pfam01762, Galactosyl_T, Galactosyltransferase. This family
includes the galactosyltransferases
UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-
galactosyltransferase and UDP-Gal:beta-GlcNAc beta
1,3-galactosyltranferase. Specific
galactosyltransferases transfer galactose to GlcNAc
terminal chains in the synthesis of the lacto-series
oligosaccharides types 1 and 2.
Length = 196
Score = 102 bits (257), Expect = 3e-26
Identities = 56/200 (28%), Positives = 84/200 (42%), Gaps = 22/200 (11%)
Query: 66 RRKNIRDTW--IKNIEKYQVKYLFSIGNKENVVDVKLK----EEIRRYDDILLLNQVPDE 119
RR IR TW N E ++K LF +G + D K+K EE + Y DI++++ D
Sbjct: 2 RRNAIRKTWMNKGNSEGGRIKSLFLVGLSADT-DGKVKDLVMEEAKLYGDIVVVDFE-DT 59
Query: 120 YSSLSQKVLHSFKYIYEHFD-FQYLLKCDDDTFVRVPNIIHELENKF--HYEKKLYWGFF 176
Y +L+ K L Y +Y+ K DDD + ++ L+ E Y
Sbjct: 60 YENLTFKTLTGLLYAVSKAPSAKYIGKIDDDVYFFPDKLLSLLDRGNINPSESSFYGYVM 119
Query: 177 DGRARVRRAGKWKEKNWFL------CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYIS 230
+R K+ W++ C RY PYA G Y+LS + + + S
Sbjct: 120 KEGPVIRN----KKSKWYVPPSDYPCSRYPPYASGPFYLLSRDAAELLLKASKHRRFLQI 175
Query: 231 EDVSV-GVWLSALDITRYHD 249
EDV V G+ L I+R
Sbjct: 176 EDVYVTGILADDLGISRVDL 195
>gnl|CDD|215596 PLN03133, PLN03133, beta-1,3-galactosyltransferase; Provisional.
Length = 636
Score = 84.9 bits (210), Expect = 3e-18
Identities = 70/262 (26%), Positives = 123/262 (46%), Gaps = 28/262 (10%)
Query: 47 LKHSYFIVILILTSSKNYIRRKNIRDTWIK--NIEKYQVKYLFSIG-NKENVVDVKLKEE 103
K + I + +++ N+ RR +R TW++ + V F +G +K +V+ +L E
Sbjct: 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNE 440
Query: 104 IRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELEN 163
R Y DI L+ V D YS ++ K L + E +Y++K DDD FVRV ++ L
Sbjct: 441 ARTYGDIQLMPFV-DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASL-K 498
Query: 164 KFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLC------DRYLPYALGGGYVLSHLLVKF 217
+ + L +G + ++ R + W++ + Y P+A G GYV+S + K
Sbjct: 499 RTNVSHGLLYGLINSDSQPHRN---PDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKE 555
Query: 218 ISENSHM--LSSYISEDVSVGVWLS-----ALDITRYHDVRFDTEFQSRGCNNSYLIVHK 270
+ + L + EDV++G+W++ L++ +D R E GC + Y++ H
Sbjct: 556 VYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE----GCKDGYVVAHY 611
Query: 271 Q---NMHQLYNNLMLSNQARLC 289
Q M L+ L +A C
Sbjct: 612 QSPREMLCLWQKLQEGKRATCC 633
>gnl|CDD|178735 PLN03193, PLN03193, beta-1,3-galactosyltransferase; Provisional.
Length = 408
Score = 74.6 bits (183), Expect = 6e-15
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 25/237 (10%)
Query: 48 KHSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQ-------VKYLFSIGNKEN---VVD 97
K Y +V+ I T+ + RR ++R TW+ EK + + F IG+ ++D
Sbjct: 136 KRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILD 195
Query: 98 VKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNI 157
++ E R++ D L L+ V + Y LS K F +D + +K DDD V + +
Sbjct: 196 RAIEAEDRKHGDFLRLDHV-EGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATL 254
Query: 158 IHELENKFHYEK-KLYWGFF-DGRARVRRAGKWKEKNWF----LCDRYLPYALGGGYVLS 211
L H +K ++Y G G ++ ++ E ++ ++Y +A G Y +S
Sbjct: 255 GETLVR--HRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAIS 312
Query: 212 HLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVRF------DTEFQSRGCN 262
L +IS N H+L Y +EDVS+G W LD+ D R D E++++ N
Sbjct: 313 KDLASYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGN 369
>gnl|CDD|188948 cd09549, SAM_EPH-A10, SAM domain of EPH-A10 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A10 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-A10 receptors and appears to mediate cell-cell
initiated signal transduction. It was found
preferentially expressed in the testis. EphA10 may be
involved in the pathogenesis and development of prostate
carcinoma and lymphocytic leukemia. It is a potential
molecular marker and/or therapy target for these types
of cancers.
Length = 70
Score = 29.8 bits (67), Expect = 0.27
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 234 SVGVWLSALDITRYHD 249
SVG WL ALD+ RY D
Sbjct: 9 SVGEWLEALDLCRYKD 24
>gnl|CDD|140237 PTZ00210, PTZ00210, UDP-GlcNAc-dependent glycosyltransferase;
Provisional.
Length = 382
Score = 32.6 bits (74), Expect = 0.30
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 100 LKEEIRRYDDILLLNQVPDEYSSLSQK--------------VLHSFKYIYEHF------D 139
LKEE R DI+ L ++ S ++K + Y++ F +
Sbjct: 142 LKEEAARTHDIITLPT--NDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPN 199
Query: 140 FQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAG 186
Y++K DDD F+RVP + +L + LY G ++ R+ R
Sbjct: 200 VSYIVKGDDDIFIRVPKYLADL--RVMPRHGLYMGRYNYYNRIWRRN 244
>gnl|CDD|227832 COG5545, COG5545, Predicted P-loop ATPase and inactivated
derivatives [General function prediction only].
Length = 517
Score = 28.8 bits (64), Expect = 4.6
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 68 KNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKV 127
KNI T I+N E+ +K LF + + N V++ ++ DE+ L
Sbjct: 61 KNII-TAIENDER--LKGLFWLNDSSNQVEMARPAKLH--------GSTRDEFVDLDSSE 109
Query: 128 LHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFH 166
L EH +Y +KC DD ++V + N++H
Sbjct: 110 L---AAWLEHDPERYGMKCSDDNVLKVVIAV-ARRNRYH 144
>gnl|CDD|233331 TIGR01255, pyr_form_ly_1, formate acetyltransferase 1. Alternate
names: pyruvate formate-lyase; formate
C-acetyltransferase This enzyme converts formate +
acetyl-CoA into pyruvate + CoA. This model describes
formate acetyltransferase 1. More distantly related
putative formate acetyltransferases have also been
identified, including formate acetyltransferase 2 from
E. coli, which is excluded from this model [Energy
metabolism, Fermentation].
Length = 744
Score = 28.0 bits (62), Expect = 7.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 107 YDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFH 166
D+ VPD + +VL + + E+FD L DT+V NIIH + +K++
Sbjct: 435 VDEKHKDYVVPD-IEPIRDEVL-DYDTVMENFD--KSLDWLADTYVDAMNIIHYMHDKYN 490
Query: 167 YE 168
YE
Sbjct: 491 YE 492
>gnl|CDD|134000 PHA02142, PHA02142, putative RNA ligase.
Length = 366
Score = 28.0 bits (62), Expect = 8.1
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 20 GCTITLFYISKVDNISANQTGLSKFKNLKHSYFIVILILTSSKNYIRRKNIRDTWIKNIE 79
G +IT+ +++ D T + + H Y I+ +S+N + R N W K +E
Sbjct: 179 GSSITMAWVTDPDLFLDLGT---EDEPYAHDYDDAQFIV-ASRNQVLRYNADSKWWKGVE 234
Query: 80 KYQV 83
YQ+
Sbjct: 235 NYQI 238
>gnl|CDD|119380 cd06418, GH25_BacA-like, BacA is a bacterial lysin from
Enterococcus faecalis that degrades bacterial cell
walls by catalyzing the hydrolysis of 1,4-beta-linkages
between N-acetylmuramic acid and N-acetyl-D-glucosamine
residues. BacA is homologous to the YbfG and YkuG
lysins of Bacillus subtilis. BacA has a C-terminal
catalytic glycosyl hydrolase family 25 (GH25) domain
and an N-terminal peptidoglycan-binding domain
comprised of three alpha helices which is similar to a
domain found in matrixins.
Length = 212
Score = 27.3 bits (61), Expect = 8.5
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 26 FYISKVDNISANQTGLSKFKNLK-HSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVK 84
D +A Q ++ + LK Y IV LT S KN+ T ++ I +K
Sbjct: 10 RTGWACD--TATQPTDARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLK 67
Query: 85 YLFSI 89
+F I
Sbjct: 68 -VFPI 71
>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts. Translational
elongation factor Ts (EF-Ts) catalyzes the exchange of
GTP for the GDP of the EF-Tu.GDP complex as part of the
cycle of translation elongation. This protein is found
in Bacteria, mitochondria, and chloroplasts [Protein
synthesis, Translation factors].
Length = 291
Score = 27.4 bits (61), Expect = 9.6
Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 57 ILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRY-DDILLLNQ 115
+ + +I + ++ W+K + G + +++ ++ ++++ +I LL Q
Sbjct: 183 VAANKPQFIDQDDVSQEWVKKERQIITDQAELSGKPKEILEKMVEGRMKKFLAEISLLGQ 242
Query: 116 --VPDEYSSLSQ 125
V D ++ Q
Sbjct: 243 KFVMDPSKTVGQ 254
>gnl|CDD|165197 PHA02862, PHA02862, 5L protein; Provisional.
Length = 156
Score = 26.8 bits (59), Expect = 9.7
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 260 GCNNSYLIVHKQNMHQLYNNLMLSNQARLCFHEYKERNSYEY--NWK 304
GCN Y +VH + M QL+ N + LC +Y + +Y W
Sbjct: 20 GCNEEYKVVHIKCM-QLWINYSKKKECNLCKTKYNIKKTYVSFKKWN 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.435
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,540,760
Number of extensions: 1626759
Number of successful extensions: 1997
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1977
Number of HSP's successfully gapped: 59
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)