RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10876
(319 letters)
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 69.8 bits (170), Expect = 6e-14
Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 19/198 (9%)
Query: 53 IVILILTSSKNYIRRKN-IRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDIL 111
I I + T+ + R + + DTW+ I + ++F+ E + + +
Sbjct: 15 IFIAVKTTWAFHRSRLDLLLDTWVSRIRQQT--FIFTDSPDERLQERLGPHLVVTQCS-- 70
Query: 112 LLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKL 171
+ +LS K+ F ++ DDD +V ++ L+ F ++ +
Sbjct: 71 ----AEHSHPALSCKMAAEFDAFLVS-GLRWFCHVDDDNYVNPKALLQLLK-TFPQDRDV 124
Query: 172 YWGFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLVKFISE---NSHMLSS- 227
Y G R A + + K R+ G G+ ++ L + SH + +
Sbjct: 125 YVG-KPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTS 183
Query: 228 ---YISEDVSVGVWLSAL 242
+ +D +VG +
Sbjct: 184 ALIRLPDDCTVGYIIECK 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 2e-07
Identities = 36/298 (12%), Positives = 89/298 (29%), Gaps = 85/298 (28%)
Query: 12 WILFSFILGCTI--TLFYISKVDNISANQTG-------------------LSKFKN---- 46
+F L C I T + D +SA T L K+ +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 47 ------LKHSYFIVILILTSSKNYIRR------------KNIRDTWIKNIEKYQVKYLF- 87
L + + +I S ++ + I ++ + +E + + +F
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 88 --SIGNKENVVDVKLKE--------EIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEH 137
S+ + ++ + D ++++N++ SL +K
Sbjct: 377 RLSVFPP----SAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTISIPS 430
Query: 138 FDFQYLLKCDDDTFVRVPNII--HELENKFHYEKKL------YWGFFDGR--ARVRRAGK 187
+ +K +++ + +I+ + + F + + Y+ G + +
Sbjct: 431 IYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 188 WKE-KNWFLCDRYL-------PYALGGGYVLSHLLV------KFISENSHMLSSYISE 231
+ FL R+L A + + L +I +N ++
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-04
Identities = 61/346 (17%), Positives = 111/346 (32%), Gaps = 118/346 (34%)
Query: 37 NQTGLSKFKNLKHSYFIVILILTSSKNYIRR---KNIRDTWIKNIEKYQVKYLFSI---- 89
N T L K K L +Y +++ +R K + + + + L +I
Sbjct: 112 NDTTLVKTKELIKNYI-------TARIMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFGGQ 163
Query: 90 GNKENVVDVKLKEEIR----RYDDIL--LLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYL 143
GN ++ + E+R Y ++ L+ + S L + L + K + +
Sbjct: 164 GNTDDYFE-----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 144 LKC-----DDDTFVRVP---NIIHELENKFHYE---KKLYWGFFDGRARVR--------- 183
L+ D D + +P +I + HY K L + + R+ ++
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 184 -------RAGKWKEKNWFLC--DRYLPYALGGGY---------VLSHLLVKFISEN---- 221
W+ F + + G L +++ EN
Sbjct: 278 VTAVAIAETDSWES---FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 222 -SHMLSSYISEDVSVGVWLSALDITRYHDVRFDTEFQSRGCNNSYLIVHKQ------NMH 274
S MLS IS +++ ++ T NS+L KQ N
Sbjct: 335 PSPMLS--IS-NLTQEQVQDYVNKT-----------------NSHLPAGKQVEISLVNGA 374
Query: 275 Q----------LYN-NLML--------SNQARLCFHEYKERNSYEY 301
+ LY NL L +Q+R+ F E K + S +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Score = 38.1 bits (88), Expect = 0.004
Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 76/238 (31%)
Query: 46 NLKHSYFIVILILTSSKNYIRRKNIRDTWIKNI----EKYQ------------VKYL-FS 88
+L+H +L + ++ +++ + K + E + K+L +
Sbjct: 15 SLEHV------LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY- 67
Query: 89 IGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDD 148
V + ++ ++D +L L F+ YL +
Sbjct: 68 ------VSSLVEPSKVGQFDQVLNL--------------------CLTEFENCYL--EGN 99
Query: 149 D--TFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAGKWKEKNWFL----CDRYLPY 202
D ++ E + K+L + R +R K +
Sbjct: 100 DIHALAA--KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 203 ALGGG--------------YVLSHLLVK-FISENSHMLSSYISEDVSVGVWLS-ALDI 244
A+ GG Y H+LV I ++ LS I + + L+I
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Score = 33.9 bits (77), Expect = 0.071
Identities = 49/300 (16%), Positives = 92/300 (30%), Gaps = 125/300 (41%)
Query: 13 ILFSFILGCTITLF----YISKVDNISANQTGLSK---FKNLK----HSYFIVILILTSS 61
I S L I + Y+ ++A G + LK HS +V + +
Sbjct: 234 IPISCPL---IGVIQLAHYV-----VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 62 KNYIRRKNIRDTW---IKNIEKYQVKYLFSIG-------------------NKEN----- 94
D+W ++ K + LF IG + EN
Sbjct: 286 T---------DSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 95 -----VVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDD 149
+ ++ +E+++ Y + N + ++V I L
Sbjct: 336 SPMLSISNLT-QEQVQDY--VNKTNS----HLPAGKQV-----EIS--------LVNGAK 375
Query: 150 TFVRV---PNIIHELENKFHYEKKLYWGFFDG--RARVRRAGKWKEKNWFLCDRYLPYAL 204
V V P ++ L K G ++R+ + + K F +R+LP
Sbjct: 376 NLV-VSGPPQSLYGLNLTLRKAKAP-----SGLDQSRIPFS---ERKLKFS-NRFLP--- 422
Query: 205 GGGYVLSHLLVKFISE--NSHMLSS---YISEDV---SVGVWLSALDITRYH-----DVR 251
++ +SH+L I++D+ +V + I Y D+R
Sbjct: 423 -------------VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.081
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 22/48 (45%)
Query: 79 EKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQK 126
EK +K KL+ ++ Y D +L+ K
Sbjct: 18 EKQALK--------------KLQASLKLY--------ADDSAPALAIK 43
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction,
SAM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 27.6 bits (61), Expect = 1.7
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 219 SENSHMLSSYISEDVSVGVWLSALDITRYHD 249
S S +SS +V + +L ++++ +Y
Sbjct: 2 SSGSSGMSSVSEVNVDIKDFLMSINLEQYLL 32
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 29.4 bits (66), Expect = 1.9
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 68 KNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILL 112
K+I + K E + ++ GN V+ E RYD ++
Sbjct: 61 KSISKQFEKTAEDPRFRF---FGNVVVGEHVQPGELSERYDAVIY 102
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 27.2 bits (60), Expect = 3.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 212 HLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHD 249
H + SHM+S + + SVG WL ++ + +Y
Sbjct: 9 HHSSGLVPRGSHMISGLRTLEQSVGEWLESIGLQQYES 46
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 28.1 bits (63), Expect = 3.6
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 62 KNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDIL---LLNQVPD 118
+ + ++ +D + IEKY VD ++ +D L L+ + PD
Sbjct: 19 EEFFSLQDYKDRVFEAIEKYPNVRSI-------EVDY---LDLEMFDPDLADLLIEK-PD 67
Query: 119 EYSSLSQKVLHSFKYIYEHFDFQ 141
+ +Q+ + + + ++ D
Sbjct: 68 DVIRAAQQAIRNIDRLRKNVDLN 90
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 27.9 bits (63), Expect = 4.3
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 11/30 (36%)
Query: 169 KKLYWGFFD-----------GRARVRRAGK 187
K LY + +A V + G
Sbjct: 191 KILYRAAAEEVPIEPYNIPLSQAEVIQEGS 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.435
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,951,930
Number of extensions: 290955
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 23
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.2 bits)