BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10878
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1
Length = 204
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ LFKV+V+GD VGKTS VQRY Q++F K YK TVGVDFALK+++W D + ++LQLWDI
Sbjct: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDI 64
Query: 128 AGQ 130
AGQ
Sbjct: 65 AGQ 67
>sp|Q63481|RAB7L_RAT Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2
SV=1
Length = 204
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ LFKV+V+GD VGKTS VQRY Q++F K YK TVGVDFALK+++W D + ++LQLWDI
Sbjct: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDI 64
Query: 128 AGQ 130
AGQ
Sbjct: 65 AGQ 67
>sp|Q5R7A4|RAB7L_PONAB Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1
Length = 203
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ LFKV+V+GD VGKTS VQRY Q++F K YK TVGVDFALK+++W D + ++LQLWDI
Sbjct: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
Query: 128 AGQ 130
AGQ
Sbjct: 65 AGQ 67
>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1
Length = 203
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ LFKV+V+GD VGKTS VQRY Q++F K YK TVGVDFALK+++W D + ++LQLWDI
Sbjct: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
Query: 128 AGQ 130
AGQ
Sbjct: 65 AGQ 67
>sp|Q13637|RAB32_HUMAN Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3
Length = 225
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
E LFKV+VIG+ VGKTS ++RYV F + Y+ T+GVDFALK++ W + ++LQLWDI
Sbjct: 23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDI 82
Query: 128 AGQ 130
AGQ
Sbjct: 83 AGQ 85
>sp|Q06AU5|RAB32_PIG Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1
Length = 226
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
E LFKV+VIG+ VGKTS ++RYV F + Y+ T+GVDFALK++ W + ++LQLWDI
Sbjct: 25 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDI 84
Query: 128 AGQ 130
AGQ
Sbjct: 85 AGQ 87
>sp|Q9CZE3|RAB32_MOUSE Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3
Length = 223
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
E LFKV+VIG+ VGKTS ++RYV F + Y+ T+GVDFALK++ W + ++LQLWDI
Sbjct: 21 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDI 80
Query: 128 AGQ 130
AGQ
Sbjct: 81 AGQ 83
>sp|P57729|RAB38_HUMAN Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1
Length = 211
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
E L+K++VIGD VGKTS ++RYV F Y+ T+GVDFALK++ W + ++LQLWDI
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
Query: 128 AGQ 130
AGQ
Sbjct: 67 AGQ 69
>sp|Q8QZZ8|RAB38_MOUSE Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1
Length = 211
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
E L+K++VIGD VGKTS ++RYV F Y+ T+GVDFALK++ W + ++LQLWDI
Sbjct: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
Query: 128 AGQ 130
AGQ
Sbjct: 67 AGQ 69
>sp|Q54QR3|RB32A_DICDI Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A
PE=1 SV=1
Length = 219
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 48/63 (76%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
E L+K++V+GD GKTS ++R+V N F YK T+GVDFALK++ W + +++LQLWDI
Sbjct: 13 EYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDI 72
Query: 128 AGQ 130
AGQ
Sbjct: 73 AGQ 75
>sp|Q55E31|RB32B_DICDI Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B
PE=3 SV=1
Length = 260
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
L+KV++IGD VGK+S ++RY F +YK T+GVDF++K ++W + + LQLWDIA
Sbjct: 58 HLYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEKNKIVSLQLWDIA 117
Query: 129 GQ 130
G
Sbjct: 118 GH 119
>sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2
Length = 219
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 59 IRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ 118
IR + + + +FK+++IG+ +VGKTSF+ RY +TF + TVG+DF +K V +R ++
Sbjct: 11 IRDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV-YRHEK 69
Query: 119 KIKLQLWDIAGQ 130
++KLQ+WD AGQ
Sbjct: 70 RVKLQIWDTAGQ 81
>sp|Q9TVU5|RAB1_THEPA Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1
Length = 220
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFK+IVIGD GK+S + R+ NT+ + Y T+GVDF +K VK D IKLQ+WD AG
Sbjct: 7 LFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKI-DNTTIKLQIWDTAG 65
Query: 130 Q 130
Q
Sbjct: 66 Q 66
>sp|Q4UB16|RAB1_THEAN Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1
Length = 220
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFK+IVIGD GK+S + R+ NT+ + Y T+GVDF +K VK D IKLQ+WD AG
Sbjct: 7 LFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKI-DNTTIKLQIWDTAG 65
Query: 130 Q 130
Q
Sbjct: 66 Q 66
>sp|Q5KTJ7|RAB3B_MESAU Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2
SV=1
Length = 219
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY +TF + TVG+DF +K V +R ++++KLQ+WD AG
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV-YRHEKRVKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2
Length = 219
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY +TF + TVG+DF +K V +R ++++KLQ+WD AG
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV-YRHEKRVKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1
Length = 219
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY +TF + TVG+DF +K V +R ++++KLQ+WD AG
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV-YRHEKRVKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1
Length = 219
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY +TF + TVG+DF +K V +R ++++KLQ+WD AG
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV-YRHEKRVKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1
Length = 227
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V ++++++IKLQ+WD AG
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FKNEKRIKLQIWDTAG 88
Query: 130 Q 130
Q
Sbjct: 89 Q 89
>sp|P63012|RAB3A_RAT Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1
Length = 220
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K + +R+ ++IKLQ+WD AG
Sbjct: 22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|Q06AU3|RAB3A_PIG Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1
Length = 220
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K + +R+ ++IKLQ+WD AG
Sbjct: 22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1
Length = 220
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K + +R+ ++IKLQ+WD AG
Sbjct: 22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2
SV=1
Length = 220
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K + +R+ ++IKLQ+WD AG
Sbjct: 22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|P20336|RAB3A_HUMAN Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1
Length = 220
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K + +R+ ++IKLQ+WD AG
Sbjct: 22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|P11023|RAB3A_BOVIN Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3
Length = 220
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K + +R+ ++IKLQ+WD AG
Sbjct: 22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1
Length = 227
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V ++++++IKLQ+WD AG
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FKNEKRIKLQIWDTAG 88
Query: 130 Q 130
Q
Sbjct: 89 Q 89
>sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1
Length = 227
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V ++++++IKLQ+WD AG
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FKNEKRIKLQIWDTAG 88
Query: 130 Q 130
Q
Sbjct: 89 Q 89
>sp|P10949|RAB3C_BOVIN Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3
Length = 227
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V ++++++IKLQ+WD AG
Sbjct: 30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FKNEKRIKLQIWDTAG 88
Query: 130 Q 130
Q
Sbjct: 89 Q 89
>sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5
PE=3 SV=1
Length = 206
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
+L KVI++GD VGKTS + +YVQ F K+YK T+G DF K ++ D +K+ +Q+WD A
Sbjct: 7 RLLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEV-DDKKVTMQIWDTA 65
Query: 129 GQ 130
GQ
Sbjct: 66 GQ 67
>sp|P35276|RAB3D_MOUSE Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1
Length = 219
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V +R ++IKLQ+WD AG
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV-YRHDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|Q63942|RAB3D_RAT GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2
Length = 219
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V +R ++IKLQ+WD AG
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV-YRHDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|O95716|RAB3D_HUMAN Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1
Length = 219
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V +R ++IKLQ+WD AG
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV-YRHDKRIKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2
SV=1
Length = 219
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V +R +++KLQ+WD AG
Sbjct: 22 MFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTV-FRGDKRVKLQIWDTAG 80
Query: 130 Q 130
Q
Sbjct: 81 Q 81
>sp|Q5U316|RAB35_RAT Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1
Length = 201
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ LFK+++IGD VGK+S + R+ NTF Y T+GVDF ++ V+ + +K+KLQ+WD
Sbjct: 6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDT 64
Query: 128 AGQ 130
AGQ
Sbjct: 65 AGQ 67
>sp|Q6PHN9|RAB35_MOUSE Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1
Length = 201
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ LFK+++IGD VGK+S + R+ NTF Y T+GVDF ++ V+ + +K+KLQ+WD
Sbjct: 6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDT 64
Query: 128 AGQ 130
AGQ
Sbjct: 65 AGQ 67
>sp|Q15286|RAB35_HUMAN Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1
Length = 201
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ LFK+++IGD VGK+S + R+ NTF Y T+GVDF ++ V+ + +K+KLQ+WD
Sbjct: 6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDT 64
Query: 128 AGQ 130
AGQ
Sbjct: 65 AGQ 67
>sp|P25228|RAB3_DROME Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1
SV=1
Length = 220
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K V +R +++KLQ+WD AG
Sbjct: 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FRHDKRVKLQIWDTAG 79
Query: 130 Q 130
Q
Sbjct: 80 Q 80
>sp|P38555|YPT31_YEAST GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YPT31 PE=1 SV=3
Length = 223
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFK+++IGD VGK++ + R+ +N F D K T+GV+FA + ++ D ++IK Q+WD AG
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-DGKRIKAQIWDTAG 71
Query: 130 Q 130
Q
Sbjct: 72 Q 72
>sp|Q8MXQ2|RB32C_DICDI Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C
PE=3 SV=2
Length = 224
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
K++V+G GKTS +QRY N F+ YK T+GVDF K+++ QK+ LQLWDIAGQ
Sbjct: 29 LKILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVLEIMG-QKVLLQLWDIAGQ 87
>sp|P36864|YPTV5_VOLCA GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1
Length = 205
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
++ K+I++GD VGKTS + +YVQ F K+YK T+G DF K ++ D +K+ +Q+WD A
Sbjct: 7 RVLKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEV-DDKKVTMQIWDTA 65
Query: 129 GQ 130
GQ
Sbjct: 66 GQ 67
>sp|Q22908|RASEF_CAEEL Ras and EF-hand domain-containing protein homolog OS=Caenorhabditis
elegans GN=tag-312 PE=3 SV=2
Length = 656
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQ 123
N P E+ F++++ GD VGK+SFV R ++ F T+GVDF +K V D + + LQ
Sbjct: 455 NGPAERTFRIVMCGDAAVGKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVN-VDGRNVALQ 513
Query: 124 LWDIAGQ 130
LWD AGQ
Sbjct: 514 LWDTAGQ 520
>sp|Q619T5|RASEF_CAEBR Ras and EF-hand domain-containing protein homolog OS=Caenorhabditis
briggsae GN=tag-312 PE=3 SV=1
Length = 634
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQ 123
N P E+ F++++ GD VGK+SFV R ++ F T+GVDF +K V D + + LQ
Sbjct: 433 NGPAERTFRIVMCGDAAVGKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVN-VDGRNVALQ 491
Query: 124 LWDIAGQ 130
LWD AGQ
Sbjct: 492 LWDTAGQ 498
>sp|P34141|RABA_DICDI Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2
SV=2
Length = 201
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
E LFK I +GD VGK+S + R+ ++TF + Y T+GVDF +K V + + + IKLQ+WD
Sbjct: 6 EHLFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTV-YIEGKAIKLQIWDT 64
Query: 128 AGQ 130
AGQ
Sbjct: 65 AGQ 67
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ L K++VIGD VGK+ + R+ N F Y T+GVDF ++ ++ D +KIKLQ+WD
Sbjct: 31 DMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIEL-DGKKIKLQIWDT 89
Query: 128 AGQ 130
AGQ
Sbjct: 90 AGQ 92
>sp|P35283|RAB12_MOUSE Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3
Length = 243
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
P + +VI+IG VGKTS ++R+ +TF + K TVGVDF +K V+ R +KI+LQ+W
Sbjct: 37 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG-KKIRLQIW 95
Query: 126 DIAGQ 130
D AGQ
Sbjct: 96 DTAGQ 100
>sp|P51152|RAB12_CANFA Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12
PE=2 SV=1
Length = 208
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
P + +VI+IG VGKTS ++R+ +TF + K TVGVDF +K V+ R +KI+LQ+W
Sbjct: 2 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG-KKIRLQIW 60
Query: 126 DIAGQ 130
D AGQ
Sbjct: 61 DTAGQ 65
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 63 FNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKL 122
N+ + LFK+++IG+ VGK+ + R+ +T+ DY T+GVDF +K V+ D + +KL
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKL 59
Query: 123 QLWDIAGQ 130
Q+WD AGQ
Sbjct: 60 QIWDTAGQ 67
>sp|P35284|RAB12_RAT Ras-related protein Rab-12 OS=Rattus norvegicus GN=Rab12 PE=1 SV=2
Length = 243
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
P + +VI+IG VGKTS ++R+ +TF + K TVGVDF +K V+ R +KI+LQ+W
Sbjct: 37 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG-KKIRLQIW 95
Query: 126 DIAGQ 130
D AGQ
Sbjct: 96 DTAGQ 100
>sp|Q6IQ22|RAB12_HUMAN Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=1 SV=3
Length = 244
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
P + +VI+IG VGKTS ++R+ +TF + K TVGVDF +K V+ R +KI+LQ+W
Sbjct: 38 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG-KKIRLQIW 96
Query: 126 DIAGQ 130
D AGQ
Sbjct: 97 DTAGQ 101
>sp|P35288|RAB23_MOUSE Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2
Length = 237
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
E K++V+G+ VGK+S +QRY + F KDYK T+GVDF + ++ D+ ++L LWD
Sbjct: 7 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED-VRLMLWDT 65
Query: 128 AGQ 130
AGQ
Sbjct: 66 AGQ 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,474,205
Number of Sequences: 539616
Number of extensions: 2132618
Number of successful extensions: 8991
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 7669
Number of HSP's gapped (non-prelim): 1027
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)