Query psy10878
Match_columns 131
No_of_seqs 232 out of 1969
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 20:43:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 99.9 2.3E-23 5E-28 156.3 6.1 123 1-130 107-236 (444)
2 KOG0084|consensus 99.9 3.8E-22 8.2E-27 135.1 7.6 65 66-131 5-69 (205)
3 KOG0094|consensus 99.9 1.1E-21 2.3E-26 132.9 6.9 65 66-131 18-82 (221)
4 PRK03003 GTP-binding protein D 99.8 9.7E-21 2.1E-25 146.0 7.3 122 2-130 142-269 (472)
5 TIGR03594 GTPase_EngA ribosome 99.8 1.3E-19 2.9E-24 138.0 7.6 122 2-130 103-230 (429)
6 KOG0394|consensus 99.8 6.8E-20 1.5E-24 123.1 4.5 64 67-131 6-69 (210)
7 KOG0078|consensus 99.8 4.9E-19 1.1E-23 121.3 8.1 65 66-131 8-72 (207)
8 KOG0098|consensus 99.8 5.5E-19 1.2E-23 119.0 7.2 64 67-131 3-66 (216)
9 KOG0080|consensus 99.8 9E-19 2E-23 115.6 7.9 65 66-131 7-71 (209)
10 KOG0092|consensus 99.8 8.2E-19 1.8E-23 118.6 7.8 63 68-131 3-65 (200)
11 PRK09518 bifunctional cytidyla 99.8 3.3E-19 7.2E-24 143.2 6.9 123 2-130 379-508 (712)
12 KOG0079|consensus 99.8 2.4E-19 5.3E-24 116.9 3.4 63 68-131 6-68 (198)
13 KOG0087|consensus 99.8 2.6E-18 5.6E-23 117.7 7.4 67 64-131 8-74 (222)
14 KOG0095|consensus 99.8 3.6E-18 7.7E-23 111.7 7.3 63 68-131 5-67 (213)
15 PRK00093 GTP-binding protein D 99.7 5.8E-18 1.3E-22 129.3 7.6 121 2-130 105-231 (435)
16 KOG0086|consensus 99.7 3.9E-18 8.3E-23 111.9 5.1 64 67-131 6-69 (214)
17 cd01859 MJ1464 MJ1464. This f 99.7 4.1E-18 9E-23 113.6 4.6 110 4-129 39-155 (156)
18 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 3.1E-17 6.6E-22 112.3 8.2 63 67-131 2-64 (182)
19 cd04128 Spg1 Spg1p. Spg1p (se 99.7 6.5E-17 1.4E-21 110.6 8.0 60 71-131 1-60 (182)
20 cd01856 YlqF YlqF. Proteins o 99.7 1.3E-17 2.8E-22 113.0 4.3 118 5-130 45-170 (171)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1E-16 2.2E-21 113.5 8.9 63 67-131 10-72 (232)
22 cd01858 NGP_1 NGP-1. Autoanti 99.7 2.1E-17 4.6E-22 110.4 5.1 110 6-129 39-156 (157)
23 cd04131 Rnd Rnd subfamily. Th 99.7 8.2E-17 1.8E-21 109.7 8.1 59 71-131 2-60 (178)
24 KOG0091|consensus 99.7 6.9E-18 1.5E-22 111.7 2.1 66 66-131 4-69 (213)
25 cd04120 Rab12 Rab12 subfamily. 99.7 9.8E-17 2.1E-21 111.5 8.0 59 72-131 2-60 (202)
26 cd01875 RhoG RhoG subfamily. 99.7 1.2E-16 2.6E-21 109.9 8.2 60 70-131 3-62 (191)
27 cd04133 Rop_like Rop subfamily 99.7 1.2E-16 2.6E-21 108.8 8.1 59 71-131 2-60 (176)
28 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.1E-16 2.4E-21 108.2 7.8 59 72-131 2-60 (170)
29 TIGR03596 GTPase_YlqF ribosome 99.7 3.7E-17 8E-22 118.5 5.2 119 6-130 48-173 (276)
30 cd04121 Rab40 Rab40 subfamily. 99.7 2.3E-16 5.1E-21 108.6 8.8 63 68-131 4-66 (189)
31 cd01857 HSR1_MMR1 HSR1/MMR1. 99.7 6.7E-17 1.4E-21 106.3 5.7 91 5-130 41-138 (141)
32 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.3E-16 5E-21 107.1 8.1 59 71-131 2-60 (175)
33 cd04119 RJL RJL (RabJ-Like) su 99.7 2E-16 4.4E-21 105.4 7.8 60 71-131 1-60 (168)
34 KOG0093|consensus 99.7 2.3E-16 4.9E-21 102.9 7.2 64 67-131 18-81 (193)
35 cd01855 YqeH YqeH. YqeH is an 99.7 7.4E-17 1.6E-21 110.8 5.2 105 5-129 60-189 (190)
36 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.9E-16 4.2E-21 111.4 7.4 59 71-131 2-60 (222)
37 cd04122 Rab14 Rab14 subfamily. 99.7 3.1E-16 6.7E-21 105.1 7.9 61 70-131 2-62 (166)
38 PRK09563 rbgA GTPase YlqF; Rev 99.7 6.9E-17 1.5E-21 117.7 4.9 119 6-130 51-176 (287)
39 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 3.5E-16 7.6E-21 108.2 8.0 60 71-131 1-61 (201)
40 cd01867 Rab8_Rab10_Rab13_like 99.7 3.5E-16 7.6E-21 105.0 7.8 62 69-131 2-63 (167)
41 cd04116 Rab9 Rab9 subfamily. 99.7 5.2E-16 1.1E-20 104.3 8.3 63 68-131 3-65 (170)
42 cd01865 Rab3 Rab3 subfamily. 99.7 5.9E-16 1.3E-20 103.7 7.9 60 71-131 2-61 (165)
43 cd01849 YlqF_related_GTPase Yl 99.7 8E-17 1.7E-21 107.5 3.6 120 3-129 26-154 (155)
44 cd04136 Rap_like Rap-like subf 99.7 4.8E-16 1E-20 103.4 7.4 59 71-131 2-60 (163)
45 cd01892 Miro2 Miro2 subfamily. 99.6 7.9E-16 1.7E-20 103.9 8.1 63 68-131 2-65 (169)
46 cd04117 Rab15 Rab15 subfamily. 99.6 7.4E-16 1.6E-20 103.1 7.8 60 71-131 1-60 (161)
47 cd04102 RabL3 RabL3 (Rab-like3 99.6 6.3E-16 1.4E-20 107.4 7.7 61 71-131 1-65 (202)
48 KOG0393|consensus 99.6 2.6E-16 5.6E-21 108.0 5.4 62 69-131 3-64 (198)
49 PLN03071 GTP-binding nuclear p 99.6 8.3E-16 1.8E-20 108.0 8.2 63 68-131 11-73 (219)
50 cd04110 Rab35 Rab35 subfamily. 99.6 9.7E-16 2.1E-20 106.0 8.3 62 69-131 5-66 (199)
51 cd04109 Rab28 Rab28 subfamily. 99.6 7.8E-16 1.7E-20 107.7 7.9 61 71-131 1-61 (215)
52 KOG0097|consensus 99.6 3.3E-16 7.2E-21 101.8 5.5 64 67-131 8-71 (215)
53 cd04127 Rab27A Rab27a subfamil 99.6 9.8E-16 2.1E-20 103.8 7.9 63 69-131 3-74 (180)
54 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1E-15 2.2E-20 101.4 7.8 59 71-131 2-60 (162)
55 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.2E-15 2.7E-20 102.1 8.1 61 70-131 2-62 (166)
56 PTZ00369 Ras-like protein; Pro 99.6 1.2E-15 2.6E-20 104.7 7.9 61 69-131 4-64 (189)
57 PLN03110 Rab GTPase; Provision 99.6 1.9E-15 4E-20 105.9 9.0 64 67-131 9-72 (216)
58 cd04111 Rab39 Rab39 subfamily. 99.6 1.1E-15 2.3E-20 106.8 7.8 62 70-131 2-63 (211)
59 cd04175 Rap1 Rap1 subgroup. T 99.6 1.1E-15 2.5E-20 102.0 7.5 60 70-131 1-60 (164)
60 cd04124 RabL2 RabL2 subfamily. 99.6 1.6E-15 3.4E-20 101.4 8.1 60 71-131 1-60 (161)
61 cd01864 Rab19 Rab19 subfamily. 99.6 1.4E-15 3E-20 101.8 7.8 62 69-131 2-63 (165)
62 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.3E-15 2.7E-20 103.2 7.6 60 70-131 2-61 (172)
63 PLN00023 GTP-binding protein; 99.6 1.8E-15 3.9E-20 111.1 8.8 68 64-131 15-94 (334)
64 cd01868 Rab11_like Rab11-like. 99.6 1.7E-15 3.6E-20 101.3 7.9 62 69-131 2-63 (165)
65 cd04118 Rab24 Rab24 subfamily. 99.6 1.6E-15 3.6E-20 104.0 8.1 60 71-131 1-61 (193)
66 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.7E-15 3.7E-20 102.0 7.9 61 70-131 2-62 (170)
67 cd01871 Rac1_like Rac1-like su 99.6 1.7E-15 3.7E-20 102.8 7.9 59 71-131 2-60 (174)
68 cd04106 Rab23_lke Rab23-like s 99.6 1.5E-15 3.2E-20 101.0 7.5 60 71-131 1-62 (162)
69 cd00877 Ran Ran (Ras-related n 99.6 2E-15 4.4E-20 101.5 8.1 60 71-131 1-60 (166)
70 PF00071 Ras: Ras family; Int 99.6 1.7E-15 3.7E-20 100.8 7.5 59 72-131 1-59 (162)
71 cd04176 Rap2 Rap2 subgroup. T 99.6 1.8E-15 3.9E-20 100.9 7.5 60 70-131 1-60 (163)
72 cd04125 RabA_like RabA-like su 99.6 2.2E-15 4.8E-20 103.0 7.9 60 71-131 1-60 (188)
73 cd04113 Rab4 Rab4 subfamily. 99.6 3E-15 6.5E-20 99.6 7.6 60 71-131 1-60 (161)
74 cd01866 Rab2 Rab2 subfamily. 99.6 3.9E-15 8.4E-20 100.1 8.2 62 69-131 3-64 (168)
75 cd04142 RRP22 RRP22 subfamily. 99.6 2.4E-15 5.2E-20 104.2 7.0 59 71-130 1-59 (198)
76 PRK12289 GTPase RsgA; Reviewed 99.6 1.1E-15 2.3E-20 114.0 5.3 71 5-94 119-196 (352)
77 cd01861 Rab6 Rab6 subfamily. 99.6 4.3E-15 9.4E-20 98.7 7.8 60 71-131 1-60 (161)
78 cd01860 Rab5_related Rab5-rela 99.6 5.1E-15 1.1E-19 98.5 7.7 61 70-131 1-61 (163)
79 cd04134 Rho3 Rho3 subfamily. 99.6 5.1E-15 1.1E-19 101.6 7.8 58 72-131 2-59 (189)
80 cd04143 Rhes_like Rhes_like su 99.6 3.5E-15 7.6E-20 106.6 7.0 59 71-131 1-59 (247)
81 cd04101 RabL4 RabL4 (Rab-like4 99.6 5.3E-15 1.2E-19 98.6 7.4 61 71-131 1-63 (164)
82 KOG0081|consensus 99.6 1.3E-16 2.8E-21 105.4 -0.4 65 67-131 6-78 (219)
83 cd04132 Rho4_like Rho4-like su 99.6 5.1E-15 1.1E-19 101.0 7.4 60 71-131 1-60 (187)
84 cd04112 Rab26 Rab26 subfamily. 99.6 5.1E-15 1.1E-19 101.7 7.3 60 71-131 1-61 (191)
85 PLN03108 Rab family protein; P 99.6 8.2E-15 1.8E-19 102.2 8.2 62 69-131 5-66 (210)
86 cd04140 ARHI_like ARHI subfami 99.6 9E-15 2E-19 98.0 7.8 59 71-131 2-60 (165)
87 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.1E-14 2.4E-19 96.9 8.0 60 70-131 2-61 (164)
88 smart00173 RAS Ras subfamily o 99.6 7.6E-15 1.6E-19 97.9 7.2 59 71-131 1-59 (164)
89 cd04144 Ras2 Ras2 subfamily. 99.6 5.3E-15 1.1E-19 101.5 6.4 58 72-131 1-58 (190)
90 cd04178 Nucleostemin_like Nucl 99.6 3.8E-15 8.2E-20 101.2 5.5 56 68-129 115-171 (172)
91 TIGR00157 ribosome small subun 99.6 2E-15 4.4E-20 107.7 4.2 72 4-94 65-144 (245)
92 PLN03118 Rab family protein; P 99.6 2.2E-14 4.8E-19 99.9 9.2 63 67-131 11-73 (211)
93 cd01870 RhoA_like RhoA-like su 99.6 1.1E-14 2.4E-19 98.1 7.4 59 71-131 2-60 (175)
94 cd01862 Rab7 Rab7 subfamily. 99.6 1.3E-14 2.8E-19 97.3 7.5 60 71-131 1-60 (172)
95 cd04103 Centaurin_gamma Centau 99.6 1.5E-14 3.3E-19 96.8 7.5 58 71-131 1-58 (158)
96 KOG0083|consensus 99.6 1.2E-15 2.6E-20 98.3 1.9 57 74-131 1-58 (192)
97 cd04177 RSR1 RSR1 subgroup. R 99.6 1.6E-14 3.5E-19 97.0 7.6 59 71-131 2-60 (168)
98 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.9E-14 4.1E-19 97.2 7.9 59 71-131 1-59 (173)
99 cd04148 RGK RGK subfamily. Th 99.5 1.6E-14 3.4E-19 101.6 7.3 60 71-131 1-61 (221)
100 smart00175 RAB Rab subfamily o 99.5 2.3E-14 5E-19 95.3 7.7 60 71-131 1-60 (164)
101 cd01863 Rab18 Rab18 subfamily. 99.5 2.3E-14 4.9E-19 95.3 7.6 60 71-131 1-60 (161)
102 PTZ00132 GTP-binding nuclear p 99.5 3E-14 6.4E-19 99.5 8.4 64 67-131 6-69 (215)
103 smart00174 RHO Rho (Ras homolo 99.5 2.1E-14 4.5E-19 96.7 7.3 57 73-131 1-57 (174)
104 cd04135 Tc10 TC10 subfamily. 99.5 2.8E-14 6E-19 96.1 7.9 59 71-131 1-59 (174)
105 COG1161 Predicted GTPases [Gen 99.5 6.5E-15 1.4E-19 108.8 4.0 118 5-129 60-186 (322)
106 cd01873 RhoBTB RhoBTB subfamil 99.5 2.7E-14 5.9E-19 98.7 6.8 61 70-131 2-77 (195)
107 PRK12288 GTPase RsgA; Reviewed 99.5 6.6E-15 1.4E-19 109.7 3.7 72 4-94 148-229 (347)
108 KOG0088|consensus 99.5 4.5E-15 9.8E-20 98.1 2.4 66 65-131 8-73 (218)
109 smart00176 RAN Ran (Ras-relate 99.5 3.1E-14 6.7E-19 98.8 6.7 55 76-131 1-55 (200)
110 cd04146 RERG_RasL11_like RERG/ 99.5 2.9E-14 6.2E-19 95.4 6.0 58 72-131 1-58 (165)
111 PRK13796 GTPase YqeH; Provisio 99.5 1.8E-14 3.8E-19 108.2 5.4 105 5-130 95-220 (365)
112 COG1100 GTPase SAR1 and relate 99.5 4.4E-14 9.6E-19 98.5 6.8 61 70-131 5-65 (219)
113 TIGR03597 GTPase_YqeH ribosome 99.5 4E-14 8.8E-19 106.1 6.4 104 6-130 90-214 (360)
114 cd04123 Rab21 Rab21 subfamily. 99.5 1E-13 2.2E-18 91.8 7.6 60 71-131 1-60 (162)
115 cd04114 Rab30 Rab30 subfamily. 99.5 1.6E-13 3.4E-18 91.9 8.4 62 69-131 6-67 (169)
116 cd00157 Rho Rho (Ras homology) 99.5 1.4E-13 3E-18 92.2 8.0 59 71-131 1-59 (171)
117 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 7.4E-14 1.6E-18 95.3 6.7 61 70-131 3-63 (183)
118 cd00154 Rab Rab family. Rab G 99.5 1.4E-13 3E-18 90.3 7.5 60 71-131 1-60 (159)
119 cd04139 RalA_RalB RalA/RalB su 99.5 1.4E-13 3E-18 91.4 6.9 59 71-131 1-59 (164)
120 PRK00098 GTPase RsgA; Reviewed 99.5 1.6E-14 3.5E-19 105.8 2.0 72 4-94 109-188 (298)
121 TIGR00231 small_GTP small GTP- 99.5 4.6E-13 9.9E-18 87.4 8.2 60 71-131 2-61 (161)
122 cd04126 Rab20 Rab20 subfamily. 99.5 2.5E-13 5.5E-18 95.6 7.1 55 71-131 1-55 (220)
123 cd01854 YjeQ_engC YjeQ/EngC. 99.4 2E-14 4.4E-19 104.8 1.2 73 4-95 107-186 (287)
124 cd04137 RheB Rheb (Ras Homolog 99.4 3.7E-13 8.1E-18 91.2 6.8 59 71-131 2-60 (180)
125 cd04150 Arf1_5_like Arf1-Arf5- 99.4 3.1E-13 6.6E-18 90.3 5.8 55 71-131 1-55 (159)
126 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 2.5E-13 5.4E-18 91.2 5.2 54 73-131 2-55 (164)
127 KOG0395|consensus 99.4 3.8E-13 8.2E-18 93.1 6.2 61 69-131 2-62 (196)
128 cd01893 Miro1 Miro1 subfamily. 99.4 6.1E-13 1.3E-17 89.2 6.6 58 71-131 1-58 (166)
129 cd04149 Arf6 Arf6 subfamily. 99.4 4.5E-13 9.8E-18 90.3 5.8 57 69-131 8-64 (168)
130 cd04147 Ras_dva Ras-dva subfam 99.4 6.5E-13 1.4E-17 91.7 6.4 58 72-131 1-58 (198)
131 smart00177 ARF ARF-like small 99.4 6.4E-13 1.4E-17 90.1 6.2 57 69-131 12-68 (175)
132 cd00876 Ras Ras family. The R 99.4 7.9E-13 1.7E-17 87.3 6.4 58 72-131 1-58 (160)
133 PTZ00133 ADP-ribosylation fact 99.4 6.9E-13 1.5E-17 90.6 6.0 56 70-131 17-72 (182)
134 PLN00223 ADP-ribosylation fact 99.4 8.8E-13 1.9E-17 90.0 6.2 57 69-131 16-72 (181)
135 cd04129 Rho2 Rho2 subfamily. 99.4 1.9E-12 4.2E-17 88.6 7.8 59 71-131 2-60 (187)
136 KOG4252|consensus 99.4 1.2E-14 2.6E-19 97.8 -4.0 65 66-131 16-80 (246)
137 cd04154 Arl2 Arl2 subfamily. 99.4 1.6E-12 3.4E-17 87.8 6.1 58 68-131 12-69 (173)
138 cd04158 ARD1 ARD1 subfamily. 99.3 2.1E-12 4.6E-17 86.9 6.0 54 72-131 1-54 (169)
139 cd04157 Arl6 Arl6 subfamily. 99.3 2.6E-12 5.6E-17 85.2 5.2 55 72-131 1-56 (162)
140 cd04171 SelB SelB subfamily. 99.3 3.3E-12 7.2E-17 84.7 5.7 58 72-131 2-62 (164)
141 COG1162 Predicted GTPases [Gen 99.3 3E-12 6.5E-17 92.9 5.3 70 4-92 108-186 (301)
142 cd04159 Arl10_like Arl10-like 99.3 7.3E-12 1.6E-16 82.2 6.2 54 73-131 2-55 (159)
143 cd04161 Arl2l1_Arl13_like Arl2 99.3 7.3E-12 1.6E-16 84.3 5.6 54 72-131 1-54 (167)
144 cd01897 NOG NOG1 is a nucleola 99.3 1.1E-11 2.4E-16 82.9 6.4 56 72-130 2-57 (168)
145 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 8.9E-12 1.9E-16 84.3 5.9 56 70-131 15-70 (174)
146 PF08477 Miro: Miro-like prote 99.3 1.3E-11 2.8E-16 78.3 5.9 59 72-131 1-61 (119)
147 cd04151 Arl1 Arl1 subfamily. 99.3 8.6E-12 1.9E-16 82.9 5.3 54 72-131 1-54 (158)
148 cd04156 ARLTS1 ARLTS1 subfamil 99.3 1.1E-11 2.3E-16 82.3 5.7 55 72-131 1-55 (160)
149 cd01850 CDC_Septin CDC/Septin. 99.3 3.8E-11 8.3E-16 87.1 8.6 60 69-129 3-72 (276)
150 cd04160 Arfrp1 Arfrp1 subfamil 99.2 1.8E-11 3.8E-16 81.7 5.5 55 72-131 1-61 (167)
151 KOG0096|consensus 99.2 3.3E-11 7E-16 81.8 6.6 63 68-131 8-70 (216)
152 cd01891 TypA_BipA TypA (tyrosi 99.2 1.1E-11 2.4E-16 85.3 4.5 59 72-131 4-76 (194)
153 cd00878 Arf_Arl Arf (ADP-ribos 99.2 1.8E-11 4E-16 81.0 5.4 54 72-131 1-54 (158)
154 smart00178 SAR Sar1p-like memb 99.2 2.9E-11 6.2E-16 82.7 6.0 58 68-131 15-72 (184)
155 PRK04213 GTP-binding protein; 99.2 4.3E-11 9.4E-16 82.5 6.2 55 68-129 7-61 (201)
156 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 4.1E-11 8.9E-16 79.9 5.9 59 72-131 2-61 (168)
157 PRK01889 GTPase RsgA; Reviewed 99.2 8.6E-12 1.9E-16 93.4 2.6 73 3-93 139-218 (356)
158 cd01879 FeoB Ferrous iron tran 99.2 2.6E-11 5.7E-16 80.0 4.7 54 75-131 1-54 (158)
159 cd00879 Sar1 Sar1 subfamily. 99.2 5.4E-11 1.2E-15 81.3 6.4 57 69-131 18-74 (190)
160 KOG1673|consensus 99.2 3.1E-11 6.8E-16 79.7 4.8 65 66-131 16-80 (205)
161 TIGR03598 GTPase_YsxC ribosome 99.2 7.5E-11 1.6E-15 80.1 6.8 60 67-130 15-74 (179)
162 PRK00454 engB GTP-binding prot 99.2 6.4E-11 1.4E-15 81.1 6.3 60 67-130 21-80 (196)
163 TIGR00450 mnmE_trmE_thdF tRNA 99.1 1.5E-10 3.2E-15 89.0 7.6 59 68-130 201-261 (442)
164 KOG0073|consensus 99.1 1.6E-10 3.4E-15 76.9 6.2 58 67-130 13-70 (185)
165 cd01890 LepA LepA subfamily. 99.1 1.2E-10 2.6E-15 78.6 5.6 60 72-131 2-78 (179)
166 KOG0070|consensus 99.1 1E-10 2.2E-15 79.0 5.2 59 67-131 14-72 (181)
167 PRK15494 era GTPase Era; Provi 99.1 1E-10 2.2E-15 87.2 5.0 60 68-130 50-110 (339)
168 PF02421 FeoB_N: Ferrous iron 99.1 1.7E-10 3.7E-15 77.1 5.6 57 71-130 1-57 (156)
169 cd04155 Arl3 Arl3 subfamily. 99.1 2.7E-10 5.8E-15 76.5 6.6 56 70-131 14-69 (173)
170 cd01878 HflX HflX subfamily. 99.1 1.7E-10 3.7E-15 79.8 5.6 61 68-130 39-99 (204)
171 TIGR03156 GTP_HflX GTP-binding 99.1 2.3E-10 4.9E-15 85.7 6.2 60 69-130 188-247 (351)
172 cd04105 SR_beta Signal recogni 99.1 2.6E-10 5.7E-15 79.3 5.9 58 72-131 2-59 (203)
173 KOG1424|consensus 99.1 1.5E-10 3.3E-15 88.7 4.7 55 70-129 314-368 (562)
174 TIGR02528 EutP ethanolamine ut 99.1 1.1E-10 2.4E-15 76.1 3.6 44 72-130 2-45 (142)
175 cd01898 Obg Obg subfamily. Th 99.1 3E-10 6.5E-15 75.9 5.2 57 72-130 2-58 (170)
176 PRK00093 GTP-binding protein D 99.1 4.1E-10 9E-15 86.2 6.5 58 71-131 2-60 (435)
177 cd04164 trmE TrmE (MnmE, ThdF, 99.1 5.8E-10 1.3E-14 73.2 6.4 57 71-130 2-59 (157)
178 cd01889 SelB_euk SelB subfamil 99.1 2.3E-10 5.1E-15 78.5 4.6 60 71-130 1-78 (192)
179 PRK03003 GTP-binding protein D 99.0 5.8E-10 1.3E-14 86.4 7.2 58 71-131 39-97 (472)
180 PRK05291 trmE tRNA modificatio 99.0 5.3E-10 1.1E-14 86.2 6.4 60 69-131 214-274 (449)
181 PF00025 Arf: ADP-ribosylation 99.0 2.6E-10 5.6E-15 77.5 4.0 58 68-131 12-69 (175)
182 KOG2484|consensus 99.0 2.3E-10 5E-15 85.4 3.9 115 5-129 176-306 (435)
183 cd01895 EngA2 EngA2 subfamily. 99.0 1.4E-09 3.1E-14 72.3 6.1 58 70-130 2-60 (174)
184 KOG4423|consensus 99.0 1.6E-12 3.5E-17 88.0 -8.7 65 67-131 22-86 (229)
185 KOG0071|consensus 99.0 2.2E-09 4.8E-14 69.9 5.9 58 68-131 15-72 (180)
186 PF01926 MMR_HSR1: 50S ribosom 99.0 2.5E-09 5.5E-14 67.7 6.2 55 72-130 1-57 (116)
187 cd00882 Ras_like_GTPase Ras-li 98.9 1.4E-09 3.1E-14 69.9 5.0 55 75-131 1-56 (157)
188 TIGR00436 era GTP-binding prot 98.9 1.8E-09 3.9E-14 78.1 6.0 55 72-130 2-58 (270)
189 cd01876 YihA_EngB The YihA (En 98.9 1.5E-09 3.3E-14 71.7 5.2 53 73-129 2-54 (170)
190 cd04163 Era Era subfamily. Er 98.9 2.3E-09 5.1E-14 70.6 6.0 58 70-130 3-61 (168)
191 COG0486 ThdF Predicted GTPase 98.9 2.3E-09 5E-14 81.6 6.5 61 67-130 214-275 (454)
192 TIGR03594 GTPase_EngA ribosome 98.9 2.4E-09 5.3E-14 81.8 6.1 56 72-130 1-57 (429)
193 cd01896 DRG The developmentall 98.9 3.1E-09 6.7E-14 75.4 6.2 55 72-130 2-57 (233)
194 KOG2485|consensus 98.9 9.2E-10 2E-14 80.0 3.0 117 6-130 73-206 (335)
195 cd01894 EngA1 EngA1 subfamily. 98.9 3E-09 6.5E-14 69.9 5.2 54 74-131 1-56 (157)
196 TIGR00487 IF-2 translation ini 98.9 4.6E-09 9.9E-14 83.3 7.0 62 68-131 85-146 (587)
197 PRK11058 GTPase HflX; Provisio 98.9 2.8E-09 6.1E-14 81.7 5.5 58 71-130 198-255 (426)
198 cd04104 p47_IIGP_like p47 (47- 98.9 2.1E-09 4.5E-14 74.3 4.3 60 71-130 2-62 (197)
199 PRK09518 bifunctional cytidyla 98.9 6.3E-09 1.4E-13 84.3 7.4 62 67-131 272-334 (712)
200 cd01881 Obg_like The Obg-like 98.9 2E-09 4.3E-14 72.2 3.5 52 75-130 1-54 (176)
201 cd01853 Toc34_like Toc34-like 98.8 7.9E-09 1.7E-13 74.1 6.2 60 67-130 28-89 (249)
202 PRK09554 feoB ferrous iron tra 98.8 1.1E-08 2.4E-13 83.3 7.4 59 70-131 3-61 (772)
203 cd00881 GTP_translation_factor 98.8 6.5E-09 1.4E-13 70.3 4.9 57 72-131 1-73 (189)
204 TIGR00991 3a0901s02IAP34 GTP-b 98.8 1.1E-08 2.5E-13 75.0 6.4 60 67-130 35-96 (313)
205 TIGR00437 feoB ferrous iron tr 98.8 1.1E-08 2.4E-13 81.3 6.3 52 77-131 1-52 (591)
206 PRK00089 era GTPase Era; Revie 98.8 1.8E-08 4E-13 73.4 6.8 59 69-130 4-63 (292)
207 PF00735 Septin: Septin; Inte 98.8 2.9E-08 6.3E-13 72.3 7.7 60 69-129 3-72 (281)
208 KOG2423|consensus 98.8 1.1E-09 2.5E-14 82.0 0.0 110 5-129 243-361 (572)
209 PF03193 DUF258: Protein of un 98.8 4.1E-09 8.8E-14 70.7 2.6 46 29-93 13-58 (161)
210 TIGR00475 selB selenocysteine- 98.8 1.5E-08 3.3E-13 80.4 6.2 58 71-131 1-61 (581)
211 TIGR01393 lepA GTP-binding pro 98.8 1.9E-08 4.2E-13 79.9 6.4 61 71-131 4-81 (595)
212 cd01899 Ygr210 Ygr210 subfamil 98.7 2.2E-08 4.7E-13 74.1 5.9 57 73-130 1-79 (318)
213 KOG0074|consensus 98.7 4.1E-08 8.8E-13 64.2 6.3 59 68-131 15-73 (185)
214 PRK05306 infB translation init 98.7 4.1E-08 8.9E-13 80.0 7.2 62 67-131 287-348 (787)
215 TIGR02729 Obg_CgtA Obg family 98.7 3.7E-08 8E-13 73.2 6.4 57 71-130 158-215 (329)
216 COG1160 Predicted GTPases [Gen 98.7 2.4E-08 5.3E-13 75.9 4.9 57 72-131 5-62 (444)
217 cd04167 Snu114p Snu114p subfam 98.7 4.6E-08 9.9E-13 68.3 5.8 60 72-131 2-82 (213)
218 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 2.8E-08 6.1E-13 68.5 4.6 56 72-130 2-59 (196)
219 PRK12296 obgE GTPase CgtA; Rev 98.7 4.3E-08 9.3E-13 76.3 6.0 57 71-130 160-216 (500)
220 PRK09602 translation-associate 98.7 6.6E-08 1.4E-12 73.5 6.7 26 71-96 2-27 (396)
221 KOG1423|consensus 98.7 1E-07 2.3E-12 69.5 7.2 63 63-129 65-129 (379)
222 CHL00189 infB translation init 98.7 3.8E-08 8.1E-13 79.7 5.5 63 68-131 242-306 (742)
223 COG3596 Predicted GTPase [Gene 98.7 1.5E-08 3.2E-13 72.9 2.7 62 67-131 36-98 (296)
224 KOG1191|consensus 98.6 3.9E-08 8.4E-13 75.4 4.9 59 69-130 267-326 (531)
225 cd00880 Era_like Era (E. coli 98.6 5.3E-08 1.1E-12 63.3 4.7 55 75-131 1-56 (163)
226 COG0218 Predicted GTPase [Gene 98.6 8.3E-08 1.8E-12 66.1 5.8 57 69-129 23-79 (200)
227 PRK12299 obgE GTPase CgtA; Rev 98.6 8.4E-08 1.8E-12 71.5 6.2 56 72-130 160-216 (335)
228 KOG0075|consensus 98.6 3.4E-08 7.4E-13 64.9 3.4 60 67-131 17-76 (186)
229 COG1159 Era GTPase [General fu 98.6 9.5E-08 2.1E-12 69.3 5.6 59 69-130 5-64 (298)
230 PTZ00258 GTP-binding protein; 98.6 9.8E-08 2.1E-12 72.3 5.6 62 68-129 19-94 (390)
231 PRK12297 obgE GTPase CgtA; Rev 98.6 1.4E-07 3E-12 72.3 6.3 56 72-130 160-216 (424)
232 PRK10218 GTP-binding protein; 98.6 2.1E-07 4.5E-12 74.2 7.6 61 70-131 5-79 (607)
233 cd04169 RF3 RF3 subfamily. Pe 98.6 1.5E-07 3.3E-12 68.1 5.9 21 72-92 4-24 (267)
234 PRK15467 ethanolamine utilizat 98.6 7.2E-08 1.6E-12 64.5 4.0 21 72-92 3-23 (158)
235 TIGR00491 aIF-2 translation in 98.6 1E-07 2.3E-12 75.7 5.3 60 72-131 6-80 (590)
236 COG1084 Predicted GTPase [Gene 98.5 2.2E-07 4.7E-12 68.3 6.0 61 67-130 165-225 (346)
237 cd04168 TetM_like Tet(M)-like 98.5 2E-07 4.4E-12 66.3 5.6 21 72-92 1-21 (237)
238 PRK12317 elongation factor 1-a 98.5 2.5E-07 5.4E-12 70.9 6.1 62 67-131 3-95 (425)
239 PRK12298 obgE GTPase CgtA; Rev 98.5 2.7E-07 5.9E-12 70.1 5.9 57 72-130 161-217 (390)
240 PF04548 AIG1: AIG1 family; I 98.5 1.3E-07 2.9E-12 66.1 4.0 54 71-129 1-58 (212)
241 COG5019 CDC3 Septin family pro 98.5 2E-07 4.4E-12 69.3 5.0 63 66-129 19-91 (373)
242 KOG3883|consensus 98.5 3.4E-07 7.3E-12 60.7 5.2 61 69-130 8-70 (198)
243 KOG2655|consensus 98.5 1.7E-07 3.8E-12 69.9 4.4 72 57-129 8-88 (366)
244 cd04166 CysN_ATPS CysN_ATPS su 98.5 1.4E-07 3.1E-12 65.7 3.7 21 72-92 1-21 (208)
245 PRK09601 GTP-binding protein Y 98.5 4E-07 8.6E-12 68.4 6.1 59 71-129 3-75 (364)
246 cd01900 YchF YchF subfamily. 98.5 2.1E-07 4.5E-12 67.6 4.3 57 73-129 1-71 (274)
247 PRK04004 translation initiatio 98.4 4.3E-07 9.3E-12 72.3 6.1 25 71-95 7-31 (586)
248 COG0370 FeoB Fe2+ transport sy 98.4 5.8E-07 1.3E-11 71.4 6.7 58 70-130 3-60 (653)
249 TIGR00483 EF-1_alpha translati 98.4 4.2E-07 9E-12 69.8 5.8 62 67-131 4-96 (426)
250 PF04670 Gtr1_RagA: Gtr1/RagA 98.4 2E-07 4.3E-12 66.2 3.4 56 72-131 1-59 (232)
251 cd04170 EF-G_bact Elongation f 98.4 4.4E-07 9.6E-12 65.5 4.2 21 72-92 1-21 (268)
252 KOG1547|consensus 98.3 1.5E-06 3.3E-11 61.7 6.2 61 68-129 44-113 (336)
253 PF05049 IIGP: Interferon-indu 98.3 1.2E-07 2.6E-12 71.3 0.6 25 68-92 33-57 (376)
254 PRK05433 GTP-binding protein L 98.3 9.3E-07 2E-11 70.6 5.6 62 70-131 7-85 (600)
255 TIGR00993 3a0901s04IAP86 chlor 98.3 3.2E-06 6.9E-11 67.7 7.4 59 68-130 116-176 (763)
256 TIGR00490 aEF-2 translation el 98.3 1.6E-06 3.5E-11 70.6 5.3 62 69-131 18-97 (720)
257 PRK10512 selenocysteinyl-tRNA- 98.2 2.5E-06 5.4E-11 68.3 6.2 58 72-131 2-62 (614)
258 cd01885 EF2 EF2 (for archaea a 98.2 2.1E-06 4.6E-11 60.6 4.7 21 72-92 2-22 (222)
259 cd01886 EF-G Elongation factor 98.2 3.7E-06 8E-11 61.0 5.9 56 72-130 1-74 (270)
260 TIGR00503 prfC peptide chain r 98.2 3.9E-06 8.4E-11 66.1 6.0 62 69-131 10-91 (527)
261 TIGR01394 TypA_BipA GTP-bindin 98.2 2.4E-06 5.1E-11 68.2 4.8 57 72-131 3-75 (594)
262 TIGR00485 EF-Tu translation el 98.2 3.7E-06 8.1E-11 64.0 5.5 62 67-131 9-86 (394)
263 COG1163 DRG Predicted GTPase [ 98.2 3.7E-06 8E-11 61.9 4.9 60 66-129 59-119 (365)
264 PRK13351 elongation factor G; 98.1 3.7E-06 8.1E-11 68.1 5.0 58 69-131 7-84 (687)
265 smart00010 small_GTPase Small 98.1 1.7E-06 3.6E-11 54.6 2.5 34 71-104 1-35 (124)
266 PRK00741 prfC peptide chain re 98.1 3.4E-06 7.3E-11 66.4 4.5 22 70-91 10-31 (526)
267 PF10662 PduV-EutP: Ethanolami 98.1 5E-06 1.1E-10 54.8 4.4 24 72-95 3-26 (143)
268 KOG0072|consensus 98.1 2E-06 4.4E-11 56.5 2.2 56 69-130 17-72 (182)
269 cd01851 GBP Guanylate-binding 98.1 8.8E-06 1.9E-10 57.5 5.6 59 70-130 7-70 (224)
270 PRK12735 elongation factor Tu; 98.1 9E-06 2E-10 62.0 5.7 25 68-92 10-34 (396)
271 PLN03126 Elongation factor Tu; 98.0 9.6E-06 2.1E-10 63.2 5.7 62 67-131 78-155 (478)
272 cd01888 eIF2_gamma eIF2-gamma 98.0 7.1E-06 1.5E-10 56.9 4.5 22 71-92 1-22 (203)
273 COG2229 Predicted GTPase [Gene 98.0 1.3E-05 2.8E-10 54.5 5.2 61 67-131 7-79 (187)
274 TIGR00484 EF-G translation elo 98.0 1.8E-05 3.9E-10 64.3 6.9 60 69-131 9-86 (689)
275 cd01883 EF1_alpha Eukaryotic e 98.0 1.1E-05 2.3E-10 56.7 4.7 20 72-91 1-20 (219)
276 cd01884 EF_Tu EF-Tu subfamily. 98.0 1.4E-05 3.1E-10 55.3 5.3 23 70-92 2-24 (195)
277 PF09439 SRPRB: Signal recogni 98.0 1.9E-06 4.1E-11 58.9 0.6 56 72-131 5-60 (181)
278 CHL00071 tufA elongation facto 97.9 2.4E-05 5.3E-10 59.9 6.1 26 67-92 9-34 (409)
279 PF00009 GTP_EFTU: Elongation 97.9 6.8E-06 1.5E-10 56.2 2.5 23 70-92 3-25 (188)
280 PRK04000 translation initiatio 97.9 1.1E-05 2.5E-10 61.7 3.9 26 67-92 6-31 (411)
281 TIGR03680 eif2g_arch translati 97.9 1.2E-05 2.7E-10 61.4 4.0 24 69-92 3-26 (406)
282 PRK12736 elongation factor Tu; 97.9 2.6E-05 5.7E-10 59.4 5.3 61 68-131 10-86 (394)
283 TIGR02034 CysN sulfate adenyly 97.8 2.3E-05 5.1E-10 59.9 4.4 21 71-91 1-21 (406)
284 KOG3859|consensus 97.8 3.6E-05 7.9E-10 56.0 4.9 62 67-129 39-104 (406)
285 PRK05506 bifunctional sulfate 97.8 3.5E-05 7.6E-10 62.0 4.9 24 69-92 23-46 (632)
286 PRK12739 elongation factor G; 97.8 5E-05 1.1E-09 61.8 5.8 59 69-130 7-83 (691)
287 cd04165 GTPBP1_like GTPBP1-lik 97.8 2E-05 4.2E-10 55.7 3.0 25 72-96 1-25 (224)
288 KOG1491|consensus 97.8 6.5E-05 1.4E-09 55.8 5.8 62 68-129 18-93 (391)
289 PRK05124 cysN sulfate adenylyl 97.8 5.5E-05 1.2E-09 59.0 5.5 25 68-92 25-49 (474)
290 KOG3886|consensus 97.8 1E-05 2.2E-10 57.2 1.3 59 71-131 5-64 (295)
291 KOG0076|consensus 97.7 1.9E-05 4.1E-10 53.4 2.4 58 69-131 16-80 (197)
292 TIGR00436 era GTP-binding prot 97.7 7.3E-06 1.6E-10 59.3 0.1 58 3-63 104-170 (270)
293 PLN03127 Elongation factor Tu; 97.7 9.4E-05 2E-09 57.3 6.2 62 67-131 58-135 (447)
294 COG1159 Era GTPase [General fu 97.7 9.7E-06 2.1E-10 59.0 0.6 59 3-64 111-179 (298)
295 TIGR00092 GTP-binding protein 97.7 7.7E-05 1.7E-09 56.3 5.2 25 71-95 3-27 (368)
296 COG1618 Predicted nucleotide k 97.7 0.00014 3E-09 48.9 5.5 56 69-128 4-59 (179)
297 KOG1490|consensus 97.6 4.3E-05 9.3E-10 59.3 3.0 59 69-130 167-225 (620)
298 PRK00049 elongation factor Tu; 97.6 0.00014 3.1E-09 55.5 5.8 25 68-92 10-34 (396)
299 COG0012 Predicted GTPase, prob 97.6 9.8E-05 2.1E-09 55.4 4.7 26 70-95 2-27 (372)
300 PTZ00141 elongation factor 1- 97.6 0.00016 3.6E-09 56.0 6.0 25 68-92 5-29 (446)
301 TIGR02836 spore_IV_A stage IV 97.6 0.00015 3.4E-09 55.5 5.4 25 69-93 16-40 (492)
302 KOG1707|consensus 97.6 9.1E-05 2E-09 58.3 4.0 34 67-100 6-39 (625)
303 PRK00007 elongation factor G; 97.5 0.00029 6.4E-09 57.4 6.9 59 69-130 9-85 (693)
304 PF03266 NTPase_1: NTPase; In 97.5 0.00016 3.5E-09 48.9 4.4 52 72-127 1-52 (168)
305 cd01894 EngA1 EngA1 subfamily. 97.5 1.7E-05 3.6E-10 51.9 -0.6 50 3-53 102-156 (157)
306 PF00350 Dynamin_N: Dynamin fa 97.5 0.0002 4.3E-09 47.7 4.2 32 73-104 1-33 (168)
307 KOG1486|consensus 97.3 0.00067 1.5E-08 48.9 5.4 60 67-130 59-119 (364)
308 cd04138 H_N_K_Ras_like H-Ras/N 97.3 7.5E-05 1.6E-09 48.9 0.6 48 5-53 105-160 (162)
309 cd01882 BMS1 Bms1. Bms1 is an 97.3 0.00049 1.1E-08 48.6 4.7 56 69-130 38-93 (225)
310 PRK12740 elongation factor G; 97.3 0.00029 6.2E-09 57.1 3.9 52 76-130 1-70 (668)
311 COG2262 HflX GTPases [General 97.3 0.00054 1.2E-08 52.1 4.9 61 67-129 189-249 (411)
312 PLN00043 elongation factor 1-a 97.2 0.00074 1.6E-08 52.4 5.6 24 68-91 5-28 (447)
313 cd04143 Rhes_like Rhes_like su 97.2 0.0002 4.3E-09 51.3 2.0 75 5-85 112-197 (247)
314 PRK00089 era GTPase Era; Revie 97.2 0.00016 3.5E-09 52.7 1.4 50 4-54 111-170 (292)
315 cd04145 M_R_Ras_like M-Ras/R-R 97.2 0.00015 3.2E-09 47.8 1.1 49 5-54 106-163 (164)
316 PF13207 AAA_17: AAA domain; P 97.1 0.00032 6.8E-09 44.3 2.3 21 72-92 1-21 (121)
317 cd04139 RalA_RalB RalA/RalB su 97.1 0.00013 2.9E-09 47.9 0.4 49 5-54 104-161 (164)
318 cd01879 FeoB Ferrous iron tran 97.1 0.0001 2.3E-09 48.2 -0.1 49 4-53 99-155 (158)
319 cd01898 Obg Obg subfamily. Th 97.1 0.00013 2.7E-09 48.5 0.3 48 5-53 113-169 (170)
320 cd04140 ARHI_like ARHI subfami 97.1 0.00017 3.7E-09 47.9 0.8 48 5-53 107-163 (165)
321 cd01897 NOG NOG1 is a nucleola 97.1 0.00014 3.1E-09 48.2 0.4 47 6-53 113-166 (168)
322 cd04136 Rap_like Rap-like subf 97.1 0.00016 3.4E-09 47.7 0.6 48 5-53 105-161 (163)
323 PF00009 GTP_EFTU: Elongation 97.1 7.1E-05 1.5E-09 51.2 -1.2 51 3-54 119-186 (188)
324 cd01878 HflX HflX subfamily. 97.1 0.00019 4.1E-09 49.5 0.9 47 5-52 152-202 (204)
325 PRK04213 GTP-binding protein; 97.1 9E-05 1.9E-09 50.9 -0.8 49 4-54 128-191 (201)
326 cd01890 LepA LepA subfamily. 97.1 0.00023 4.9E-09 47.8 1.1 49 5-54 118-176 (179)
327 cd04151 Arl1 Arl1 subfamily. 97.1 0.00017 3.7E-09 47.5 0.5 46 5-51 99-156 (158)
328 KOG0077|consensus 97.1 0.00045 9.7E-09 46.6 2.4 56 69-130 19-74 (193)
329 smart00173 RAS Ras subfamily o 97.0 0.00017 3.7E-09 47.6 0.3 49 5-54 104-161 (164)
330 COG0563 Adk Adenylate kinase a 97.0 0.00044 9.6E-09 47.3 2.4 23 71-93 1-23 (178)
331 PRK07261 topology modulation p 97.0 0.00045 9.8E-09 46.8 2.3 21 72-92 2-22 (171)
332 PRK08118 topology modulation p 97.0 0.0005 1.1E-08 46.4 2.5 21 72-92 3-23 (167)
333 PLN00116 translation elongatio 97.0 0.0013 2.9E-08 54.8 5.1 24 69-92 18-41 (843)
334 PF13671 AAA_33: AAA domain; P 97.0 0.00047 1E-08 44.7 2.0 19 73-91 2-20 (143)
335 PRK12299 obgE GTPase CgtA; Rev 97.0 0.0002 4.2E-09 53.6 0.1 49 5-54 270-327 (335)
336 cd01892 Miro2 Miro2 subfamily. 96.9 0.00031 6.8E-09 47.1 1.0 49 5-54 107-165 (169)
337 cd01864 Rab19 Rab19 subfamily. 96.9 0.0003 6.6E-09 46.6 0.9 47 5-52 107-163 (165)
338 PRK12297 obgE GTPase CgtA; Rev 96.9 0.0002 4.3E-09 55.2 -0.0 49 5-54 273-326 (424)
339 PTZ00416 elongation factor 2; 96.9 0.0016 3.5E-08 54.2 5.1 23 70-92 19-41 (836)
340 KOG1489|consensus 96.9 0.0013 2.7E-08 48.8 4.0 55 72-129 198-253 (366)
341 PRK09866 hypothetical protein; 96.9 0.0003 6.5E-09 56.6 0.8 51 7-58 290-356 (741)
342 cd01881 Obg_like The Obg-like 96.9 0.00013 2.8E-09 48.6 -1.1 47 5-52 119-174 (176)
343 PRK15494 era GTPase Era; Provi 96.9 0.00024 5.1E-09 53.2 0.2 57 4-63 158-222 (339)
344 cd04176 Rap2 Rap2 subgroup. T 96.9 0.0003 6.4E-09 46.5 0.6 48 5-53 105-161 (163)
345 cd04164 trmE TrmE (MnmE, ThdF, 96.9 0.00037 7.9E-09 45.3 1.0 48 5-53 106-155 (157)
346 KOG0090|consensus 96.9 0.0012 2.6E-08 46.3 3.5 54 72-131 40-93 (238)
347 cd01863 Rab18 Rab18 subfamily. 96.9 0.00036 7.8E-09 45.9 0.9 48 5-53 105-160 (161)
348 KOG1707|consensus 96.9 0.0034 7.5E-08 49.7 6.2 62 65-127 420-481 (625)
349 PRK12298 obgE GTPase CgtA; Rev 96.9 0.00032 7E-09 53.5 0.6 49 5-54 274-332 (390)
350 TIGR02528 EutP ethanolamine ut 96.9 0.00037 8E-09 45.1 0.8 44 6-50 88-140 (142)
351 PF13521 AAA_28: AAA domain; P 96.9 0.00046 9.9E-09 46.1 1.3 22 72-93 1-22 (163)
352 COG4917 EutP Ethanolamine util 96.9 0.00087 1.9E-08 43.3 2.4 23 72-94 3-25 (148)
353 cd01888 eIF2_gamma eIF2-gamma 96.8 0.00028 6.1E-09 48.9 0.1 47 7-54 138-198 (203)
354 cd00877 Ran Ran (Ras-related n 96.8 0.00029 6.2E-09 47.1 0.1 48 6-54 104-158 (166)
355 cd04175 Rap1 Rap1 subgroup. T 96.8 0.00031 6.8E-09 46.5 0.3 49 5-54 105-162 (164)
356 PF02421 FeoB_N: Ferrous iron 96.8 8.7E-05 1.9E-09 49.7 -2.5 45 4-49 103-155 (156)
357 cd04114 Rab30 Rab30 subfamily. 96.8 0.00039 8.4E-09 46.1 0.6 48 5-53 111-167 (169)
358 smart00174 RHO Rho (Ras homolo 96.8 0.00028 6E-09 47.1 -0.1 49 5-54 101-171 (174)
359 COG1116 TauB ABC-type nitrate/ 96.8 0.00076 1.6E-08 48.2 2.1 22 72-93 31-52 (248)
360 cd04157 Arl6 Arl6 subfamily. 96.8 0.00052 1.1E-08 45.1 1.1 46 5-51 103-160 (162)
361 COG5257 GCD11 Translation init 96.8 0.00063 1.4E-08 50.5 1.5 51 6-57 140-204 (415)
362 COG0481 LepA Membrane GTPase L 96.8 0.00081 1.7E-08 52.3 2.1 53 5-58 127-189 (603)
363 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.8 0.00033 7.3E-09 47.1 0.0 49 5-54 106-163 (172)
364 cd04152 Arl4_Arl7 Arl4/Arl7 su 96.8 0.00024 5.3E-09 48.3 -0.7 49 5-54 108-169 (183)
365 cd04119 RJL RJL (RabJ-Like) su 96.8 0.00038 8.2E-09 45.8 0.2 48 5-53 109-165 (168)
366 cd04150 Arf1_5_like Arf1-Arf5- 96.8 0.00039 8.4E-09 46.1 0.2 45 6-51 101-157 (159)
367 TIGR02729 Obg_CgtA Obg family 96.8 0.00035 7.5E-09 52.2 -0.0 49 5-54 272-328 (329)
368 cd01865 Rab3 Rab3 subfamily. 96.8 0.00042 9E-09 46.1 0.3 49 5-54 105-162 (165)
369 cd01868 Rab11_like Rab11-like. 96.7 0.00041 8.9E-09 45.9 0.3 47 6-53 108-163 (165)
370 cd04116 Rab9 Rab9 subfamily. 96.7 0.00056 1.2E-08 45.5 1.0 47 5-52 113-168 (170)
371 cd04156 ARLTS1 ARLTS1 subfamil 96.7 0.00087 1.9E-08 44.0 1.9 46 5-51 100-158 (160)
372 cd04142 RRP22 RRP22 subfamily. 96.7 0.00056 1.2E-08 47.3 0.9 49 5-54 115-173 (198)
373 PF10662 PduV-EutP: Ethanolami 96.7 0.00062 1.3E-08 44.9 1.0 47 3-50 86-141 (143)
374 cd04112 Rab26 Rab26 subfamily. 96.7 0.00063 1.4E-08 46.5 1.1 49 5-54 105-162 (191)
375 cd04149 Arf6 Arf6 subfamily. 96.7 0.0004 8.7E-09 46.6 0.1 46 5-51 109-166 (168)
376 PRK06217 hypothetical protein; 96.7 0.0013 2.8E-08 44.9 2.5 22 71-92 2-23 (183)
377 cd04144 Ras2 Ras2 subfamily. 96.7 0.00053 1.1E-08 46.8 0.5 49 5-54 105-162 (190)
378 PF07728 AAA_5: AAA domain (dy 96.7 0.0011 2.4E-08 42.9 2.0 20 73-92 2-21 (139)
379 cd04107 Rab32_Rab38 Rab38/Rab3 96.7 0.00057 1.2E-08 47.1 0.7 49 5-54 109-167 (201)
380 PF00004 AAA: ATPase family as 96.7 0.0012 2.7E-08 41.8 2.2 20 73-92 1-20 (132)
381 cd01862 Rab7 Rab7 subfamily. 96.7 0.00054 1.2E-08 45.5 0.4 48 6-54 109-166 (172)
382 smart00382 AAA ATPases associa 96.7 0.0015 3.2E-08 41.1 2.4 24 72-95 4-27 (148)
383 KOG1489|consensus 96.7 0.00046 1E-08 51.0 0.1 47 5-52 311-364 (366)
384 PTZ00099 rab6; Provisional 96.6 0.00067 1.4E-08 46.1 0.8 49 5-54 84-141 (176)
385 cd02019 NK Nucleoside/nucleoti 96.6 0.0016 3.4E-08 37.4 2.2 21 73-93 2-22 (69)
386 PRK12296 obgE GTPase CgtA; Rev 96.6 0.00039 8.4E-09 54.6 -0.5 49 5-54 283-339 (500)
387 smart00177 ARF ARF-like small 96.6 0.00047 1E-08 46.5 -0.1 48 6-54 114-173 (175)
388 PRK03839 putative kinase; Prov 96.6 0.0015 3.4E-08 44.2 2.3 21 72-92 2-22 (180)
389 cd04148 RGK RGK subfamily. Th 96.6 0.00058 1.3E-08 48.0 0.2 51 5-56 105-164 (221)
390 KOG0705|consensus 96.6 0.002 4.4E-08 50.9 3.1 58 69-129 29-86 (749)
391 PF05783 DLIC: Dynein light in 96.6 0.0048 1.1E-07 48.2 5.2 56 71-129 26-82 (472)
392 PF13191 AAA_16: AAA ATPase do 96.6 0.0013 2.9E-08 44.2 1.9 22 71-92 25-46 (185)
393 TIGR02322 phosphon_PhnN phosph 96.6 0.0016 3.5E-08 44.0 2.2 21 72-92 3-23 (179)
394 TIGR03156 GTP_HflX GTP-binding 96.6 0.00068 1.5E-08 51.0 0.4 47 5-52 300-349 (351)
395 cd01889 SelB_euk SelB subfamil 96.6 0.00066 1.4E-08 46.4 0.3 51 5-56 119-187 (192)
396 cd04137 RheB Rheb (Ras Homolog 96.5 0.00065 1.4E-08 45.7 0.2 49 5-54 105-162 (180)
397 PF13238 AAA_18: AAA domain; P 96.5 0.0016 3.6E-08 41.1 2.0 21 73-93 1-21 (129)
398 cd00881 GTP_translation_factor 96.5 0.0012 2.6E-08 44.3 1.4 49 5-54 113-186 (189)
399 PF13401 AAA_22: AAA domain; P 96.5 0.0016 3.5E-08 41.4 1.9 22 72-93 6-27 (131)
400 PF00005 ABC_tran: ABC transpo 96.5 0.0017 3.8E-08 41.7 2.1 22 72-93 13-34 (137)
401 PRK07560 elongation factor EF- 96.5 0.0057 1.2E-07 50.3 5.5 23 70-92 20-42 (731)
402 cd00071 GMPK Guanosine monopho 96.5 0.0019 4.1E-08 42.2 2.2 20 73-92 2-21 (137)
403 cd04101 RabL4 RabL4 (Rab-like4 96.5 0.00093 2E-08 44.1 0.7 48 5-53 106-162 (164)
404 cd04106 Rab23_lke Rab23-like s 96.5 0.00087 1.9E-08 44.1 0.5 46 5-51 105-159 (162)
405 COG5256 TEF1 Translation elong 96.5 0.0094 2E-07 45.6 6.0 25 68-92 5-29 (428)
406 PF05729 NACHT: NACHT domain 96.5 0.0021 4.5E-08 42.3 2.3 20 73-92 3-22 (166)
407 cd04109 Rab28 Rab28 subfamily. 96.5 0.00084 1.8E-08 46.8 0.4 48 6-54 109-165 (215)
408 PRK10078 ribose 1,5-bisphospho 96.5 0.0021 4.6E-08 43.9 2.3 22 72-93 4-25 (186)
409 COG0536 Obg Predicted GTPase [ 96.5 0.0044 9.6E-08 46.3 4.1 21 73-93 162-182 (369)
410 PRK14738 gmk guanylate kinase; 96.5 0.0026 5.6E-08 44.3 2.8 24 69-92 12-35 (206)
411 cd00878 Arf_Arl Arf (ADP-ribos 96.5 0.00096 2.1E-08 43.8 0.6 47 5-52 99-157 (158)
412 cd04154 Arl2 Arl2 subfamily. 96.5 0.001 2.2E-08 44.6 0.7 46 5-51 114-171 (173)
413 cd04171 SelB SelB subfamily. 96.5 0.00066 1.4E-08 44.5 -0.2 44 7-51 105-162 (164)
414 COG1136 SalX ABC-type antimicr 96.4 0.0026 5.6E-08 45.1 2.7 21 72-92 33-53 (226)
415 cd04160 Arfrp1 Arfrp1 subfamil 96.4 0.00089 1.9E-08 44.3 0.3 45 5-50 106-164 (167)
416 PRK15467 ethanolamine utilizat 96.4 0.00084 1.8E-08 44.7 0.2 49 5-54 90-146 (158)
417 PRK13695 putative NTPase; Prov 96.4 0.0024 5.1E-08 43.1 2.4 22 71-92 1-22 (174)
418 cd00009 AAA The AAA+ (ATPases 96.4 0.0024 5.2E-08 40.6 2.3 22 72-93 21-42 (151)
419 cd04124 RabL2 RabL2 subfamily. 96.4 0.00058 1.3E-08 45.3 -0.7 48 6-54 104-157 (161)
420 PRK14532 adenylate kinase; Pro 96.4 0.0024 5.2E-08 43.5 2.3 21 72-92 2-22 (188)
421 cd01861 Rab6 Rab6 subfamily. 96.4 0.001 2.3E-08 43.6 0.5 46 6-52 105-159 (161)
422 PRK14530 adenylate kinase; Pro 96.4 0.0025 5.5E-08 44.5 2.4 20 72-91 5-24 (215)
423 cd04163 Era Era subfamily. Er 96.4 0.001 2.2E-08 43.4 0.3 47 5-52 110-166 (168)
424 TIGR03263 guanyl_kin guanylate 96.4 0.0024 5.2E-08 43.1 2.1 21 72-92 3-23 (180)
425 KOG2486|consensus 96.4 0.0069 1.5E-07 44.2 4.5 58 68-129 134-192 (320)
426 cd04127 Rab27A Rab27a subfamil 96.4 0.001 2.2E-08 44.6 0.3 48 5-53 119-175 (180)
427 PRK05291 trmE tRNA modificatio 96.4 0.001 2.2E-08 51.7 0.3 49 5-54 320-369 (449)
428 PTZ00327 eukaryotic translatio 96.4 0.0013 2.8E-08 51.3 0.8 48 7-55 172-233 (460)
429 COG4525 TauB ABC-type taurine 96.4 0.0024 5.2E-08 44.6 2.0 21 72-92 33-53 (259)
430 TIGR00101 ureG urease accessor 96.3 0.003 6.5E-08 43.8 2.6 22 71-92 2-23 (199)
431 cd04159 Arl10_like Arl10-like 96.3 0.0011 2.5E-08 42.9 0.4 47 5-52 100-158 (159)
432 cd04123 Rab21 Rab21 subfamily. 96.3 0.0011 2.4E-08 43.3 0.4 47 6-53 105-160 (162)
433 COG3839 MalK ABC-type sugar tr 96.3 0.003 6.5E-08 47.3 2.7 22 73-94 32-53 (338)
434 cd04113 Rab4 Rab4 subfamily. 96.3 0.0012 2.6E-08 43.4 0.5 47 5-52 104-159 (161)
435 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.3 0.0011 2.4E-08 44.5 0.4 45 6-51 116-172 (174)
436 KOG0410|consensus 96.3 0.0036 7.8E-08 46.7 2.9 21 72-92 180-200 (410)
437 cd01870 RhoA_like RhoA-like su 96.3 0.0011 2.3E-08 44.3 0.2 47 5-52 104-172 (175)
438 COG1936 Predicted nucleotide k 96.3 0.0028 6.1E-08 43.0 2.2 21 71-91 1-21 (180)
439 cd00157 Rho Rho (Ras homology) 96.3 0.00094 2E-08 44.2 -0.1 47 5-52 103-170 (171)
440 cd01860 Rab5_related Rab5-rela 96.3 0.0012 2.6E-08 43.4 0.4 49 5-54 105-162 (163)
441 cd04122 Rab14 Rab14 subfamily. 96.3 0.0011 2.3E-08 44.1 0.1 47 5-52 106-161 (166)
442 PF13555 AAA_29: P-loop contai 96.3 0.0033 7.2E-08 35.5 2.1 21 72-92 25-45 (62)
443 cd04118 Rab24 Rab24 subfamily. 96.3 0.0015 3.2E-08 44.5 0.8 48 6-54 105-165 (193)
444 TIGR00235 udk uridine kinase. 96.3 0.0041 9E-08 43.2 3.1 24 69-92 5-28 (207)
445 cd01895 EngA2 EngA2 subfamily. 96.3 0.0014 2.9E-08 43.2 0.6 46 5-51 112-171 (174)
446 cd04120 Rab12 Rab12 subfamily. 96.3 0.0013 2.8E-08 45.8 0.5 49 5-54 104-162 (202)
447 cd00876 Ras Ras family. The R 96.3 0.0017 3.7E-08 42.3 1.1 47 5-52 103-158 (160)
448 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0029 6.2E-08 42.8 2.2 20 72-91 5-24 (188)
449 PHA00729 NTP-binding motif con 96.3 0.0036 7.7E-08 44.4 2.7 22 71-92 18-39 (226)
450 cd01887 IF2_eIF5B IF2/eIF5B (i 96.3 0.00064 1.4E-08 44.9 -1.1 51 3-54 99-165 (168)
451 cd04177 RSR1 RSR1 subgroup. R 96.3 0.0014 3E-08 43.6 0.5 49 5-54 105-163 (168)
452 cd01867 Rab8_Rab10_Rab13_like 96.3 0.0013 2.7E-08 43.8 0.3 49 5-54 107-164 (167)
453 cd00880 Era_like Era (E. coli 96.3 0.001 2.2E-08 42.7 -0.1 48 4-52 102-161 (163)
454 PTZ00369 Ras-like protein; Pro 96.3 0.0012 2.5E-08 45.1 0.1 49 5-54 109-166 (189)
455 COG2262 HflX GTPases [General 96.3 0.0018 3.8E-08 49.3 1.1 49 5-54 303-355 (411)
456 cd04158 ARD1 ARD1 subfamily. 96.3 0.0015 3.2E-08 43.7 0.6 48 6-54 100-160 (169)
457 cd04117 Rab15 Rab15 subfamily. 96.2 0.0016 3.5E-08 43.2 0.7 47 5-52 104-159 (161)
458 PRK00625 shikimate kinase; Pro 96.2 0.0035 7.6E-08 42.6 2.3 21 72-92 2-22 (173)
459 PRK05433 GTP-binding protein L 96.2 0.0027 5.8E-08 51.1 2.1 82 5-90 125-216 (600)
460 cd01896 DRG The developmentall 96.2 0.0012 2.5E-08 47.0 -0.1 48 5-54 175-225 (233)
461 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0035 7.6E-08 39.3 2.1 20 72-91 17-36 (107)
462 smart00175 RAB Rab subfamily o 96.2 0.0013 2.8E-08 43.2 0.1 49 5-54 104-161 (164)
463 PRK02496 adk adenylate kinase; 96.2 0.0043 9.3E-08 42.2 2.6 22 71-92 2-23 (184)
464 TIGR00231 small_GTP small GTP- 96.2 0.0016 3.4E-08 41.9 0.4 44 6-50 108-159 (161)
465 PF03205 MobB: Molybdopterin g 96.2 0.0034 7.5E-08 41.2 2.0 21 72-92 2-22 (140)
466 PRK05480 uridine/cytidine kina 96.2 0.0049 1.1E-07 42.8 2.9 24 69-92 5-28 (209)
467 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.2 0.0014 2.9E-08 43.5 0.1 49 5-54 106-163 (166)
468 PRK09602 translation-associate 96.2 0.0016 3.4E-08 49.9 0.4 51 3-54 214-270 (396)
469 PRK13949 shikimate kinase; Pro 96.2 0.0042 9.1E-08 42.0 2.5 21 72-92 3-23 (169)
470 PRK00300 gmk guanylate kinase; 96.2 0.0037 8E-08 43.1 2.2 22 72-93 7-28 (205)
471 cd04135 Tc10 TC10 subfamily. 96.1 0.0013 2.9E-08 43.8 -0.1 47 5-52 103-171 (174)
472 PLN03071 GTP-binding nuclear p 96.1 0.0013 2.8E-08 46.1 -0.1 49 5-54 116-171 (219)
473 PRK14737 gmk guanylate kinase; 96.1 0.0038 8.2E-08 42.9 2.2 22 72-93 6-27 (186)
474 cd02023 UMPK Uridine monophosp 96.1 0.0039 8.4E-08 42.9 2.2 20 73-92 2-21 (198)
475 cd04147 Ras_dva Ras-dva subfam 96.1 0.0024 5.1E-08 43.9 1.1 49 5-54 103-162 (198)
476 cd04132 Rho4_like Rho4-like su 96.1 0.0018 3.9E-08 43.8 0.5 49 5-54 104-166 (187)
477 PTZ00088 adenylate kinase 1; P 96.1 0.0042 9.2E-08 44.1 2.4 22 71-92 7-28 (229)
478 PLN00223 ADP-ribosylation fact 96.1 0.0021 4.6E-08 43.7 0.9 49 5-54 117-177 (181)
479 PF13173 AAA_14: AAA domain 96.1 0.0041 9E-08 39.9 2.2 22 72-93 4-25 (128)
480 KOG3347|consensus 96.1 0.0038 8.3E-08 41.6 2.0 24 69-92 6-29 (176)
481 PRK08233 hypothetical protein; 96.1 0.0048 1E-07 41.5 2.6 22 71-92 4-25 (182)
482 smart00176 RAN Ran (Ras-relate 96.1 0.0016 3.5E-08 45.2 0.2 49 5-54 98-153 (200)
483 cd01899 Ygr210 Ygr210 subfamil 96.1 0.0013 2.7E-08 49.0 -0.4 50 4-54 212-268 (318)
484 smart00053 DYNc Dynamin, GTPas 96.1 0.0047 1E-07 44.2 2.5 23 72-94 28-50 (240)
485 cd01874 Cdc42 Cdc42 subfamily. 96.1 0.0013 2.8E-08 44.4 -0.4 47 5-52 104-172 (175)
486 smart00178 SAR Sar1p-like memb 96.1 0.002 4.3E-08 43.8 0.5 47 5-52 117-182 (184)
487 PF04665 Pox_A32: Poxvirus A32 96.1 0.0047 1E-07 44.2 2.3 25 68-92 11-35 (241)
488 cd00879 Sar1 Sar1 subfamily. 96.0 0.002 4.4E-08 43.7 0.4 48 5-53 119-189 (190)
489 cd01428 ADK Adenylate kinase ( 96.0 0.0042 9E-08 42.3 2.0 21 72-92 1-21 (194)
490 TIGR01313 therm_gnt_kin carboh 96.0 0.0038 8.2E-08 41.5 1.7 20 73-92 1-20 (163)
491 PRK14531 adenylate kinase; Pro 96.0 0.0052 1.1E-07 41.9 2.4 22 71-92 3-24 (183)
492 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.0049 1.1E-07 41.7 2.2 20 73-92 2-21 (183)
493 COG1126 GlnQ ABC-type polar am 96.0 0.0064 1.4E-07 42.9 2.7 21 72-92 30-50 (240)
494 cd00882 Ras_like_GTPase Ras-li 96.0 0.0033 7.1E-08 39.8 1.2 46 4-50 100-155 (157)
495 cd03238 ABC_UvrA The excision 96.0 0.0056 1.2E-07 41.7 2.4 20 72-91 23-42 (176)
496 TIGR00150 HI0065_YjeE ATPase, 96.0 0.018 3.8E-07 37.6 4.6 22 72-93 24-45 (133)
497 cd04146 RERG_RasL11_like RERG/ 96.0 0.0018 4E-08 42.8 -0.1 48 5-53 105-162 (165)
498 cd04155 Arl3 Arl3 subfamily. 96.0 0.0023 5E-08 42.6 0.4 46 5-51 114-171 (173)
499 cd04134 Rho3 Rho3 subfamily. 96.0 0.0022 4.9E-08 43.7 0.4 49 5-54 103-173 (189)
500 TIGR00073 hypB hydrogenase acc 95.9 0.0062 1.3E-07 42.3 2.6 24 69-92 21-44 (207)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2.3e-23 Score=156.29 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=96.3
Q ss_pred CCccCCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCC-ceeeEEE
Q psy10878 1 MSYKAKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPP-EKLFKVI 74 (131)
Q Consensus 1 ~~~~~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ki~ 74 (131)
+||+.+||++||+||+|....+...++| ++++++||.||.| +.+|+|.++..+ | ......... ...+|++
T Consensus 107 ~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~G-i~dLld~v~~~l--~-~~e~~~~~~~~~~ikia 182 (444)
T COG1160 107 ILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRG-IGDLLDAVLELL--P-PDEEEEEEEETDPIKIA 182 (444)
T ss_pred HHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccC-HHHHHHHHHhhc--C-CcccccccccCCceEEE
Confidence 4677889999999999987655555555 9999999999999 999999999988 3 222112112 3679999
Q ss_pred EEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 75 VIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 75 vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
++|.||||||||+|++++++. ..+..+.+..+.....+++ +++. +.+.||||-
T Consensus 183 iiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~~--~~liDTAGi 236 (444)
T COG1160 183 IIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGRK--YVLIDTAGI 236 (444)
T ss_pred EEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE-CCeE--EEEEECCCC
Confidence 999999999999999996544 4455566666777788887 6664 579999994
No 2
>KOG0084|consensus
Probab=99.87 E-value=3.8e-22 Score=135.13 Aligned_cols=65 Identities=48% Similarity=0.871 Sum_probs=62.5
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+.+|++++|++|||||+|+.||.++.|.+.|..|+|++|..+++.+ +|+.++|+||||||||
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQE 69 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQE 69 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccH
Confidence 4678899999999999999999999999999999999999999999999 9999999999999997
No 3
>KOG0094|consensus
Probab=99.86 E-value=1.1e-21 Score=132.87 Aligned_cols=65 Identities=40% Similarity=0.849 Sum_probs=61.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+.+.+|++++|+.+|||||||+||+.+.|...|.+|+|.+|..+++.+ .++.++|++|||||||
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQE 82 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQE 82 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccHH
Confidence 3556699999999999999999999999999999999999999999998 8899999999999998
No 4
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=9.7e-21 Score=145.98 Aligned_cols=122 Identities=20% Similarity=0.349 Sum_probs=88.9
Q ss_pred CccCCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEE
Q psy10878 2 SYKAKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVI 76 (131)
Q Consensus 2 ~~~~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vv 76 (131)
+++.++|+++|+||+|+........++ +.++++||.++.| +.++++.+.+.+ +..... .......+|++++
T Consensus 142 l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~g-i~eL~~~i~~~l--~~~~~~-~~~~~~~~kI~ii 217 (472)
T PRK03003 142 LRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRG-VGDLLDAVLAAL--PEVPRV-GSASGGPRRVALV 217 (472)
T ss_pred HHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCC-cHHHHHHHHhhc--cccccc-ccccccceEEEEE
Confidence 345689999999999986432222222 6789999999999 999999888776 221111 1112346899999
Q ss_pred cCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 77 GDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
|.+|||||||+|++++..+ ..+..++++.++....+.+ ++.. +.||||||+
T Consensus 218 G~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~--~~l~DTaG~ 269 (472)
T PRK03003 218 GKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKT--WRFVDTAGL 269 (472)
T ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEE--EEEEECCCc
Confidence 9999999999999998764 2344566666666667777 6655 579999995
No 5
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=1.3e-19 Score=137.99 Aligned_cols=122 Identities=24% Similarity=0.304 Sum_probs=88.1
Q ss_pred CccCCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEE
Q psy10878 2 SYKAKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVI 76 (131)
Q Consensus 2 ~~~~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vv 76 (131)
+++.++|+++|+||+|+........++ ++++++|+.++.| +.++++.+.+.+. .... ........++++++
T Consensus 103 l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~g-v~~ll~~i~~~l~--~~~~-~~~~~~~~~~v~iv 178 (429)
T TIGR03594 103 LRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRG-IGDLLDAILELLP--EEEE-EEEEEDGPIKIAII 178 (429)
T ss_pred HHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCC-hHHHHHHHHHhcC--cccc-cccccCCceEEEEE
Confidence 456789999999999987654333333 6899999999999 9999999888772 2211 11123456899999
Q ss_pred cCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 77 GDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
|.+|+|||||++++++.... ....+++..+.....+.+ ++. .+.+|||||+
T Consensus 179 G~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~--~~~liDT~G~ 230 (429)
T TIGR03594 179 GRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGK--KYLLIDTAGI 230 (429)
T ss_pred CCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCc--EEEEEECCCc
Confidence 99999999999999976532 233344444444555555 554 5789999996
No 6
>KOG0394|consensus
Probab=99.79 E-value=6.8e-20 Score=123.10 Aligned_cols=64 Identities=47% Similarity=0.862 Sum_probs=60.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...+|++++|++|||||||+|+|.+.+|...|..|+|.+|.++.+.+ +++.+.++||||||||
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQE 69 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQE 69 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEEEecccHH
Confidence 345689999999999999999999999999999999999999999998 8999999999999997
No 7
>KOG0078|consensus
Probab=99.79 E-value=4.9e-19 Score=121.27 Aligned_cols=65 Identities=43% Similarity=0.855 Sum_probs=62.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+.+|++++|+++||||+++.||..+.|...+..|+|++|..+++.+ +|..+.+++|||+|||
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQe 72 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQE 72 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccch
Confidence 4678999999999999999999999999999999999999999999998 9999999999999997
No 8
>KOG0098|consensus
Probab=99.78 E-value=5.5e-19 Score=119.00 Aligned_cols=64 Identities=42% Similarity=0.741 Sum_probs=60.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+.+|++++|+.|||||+|+.||.+++|...+..|+|++|..+.+.+ ++++++|+||||+|||
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe 66 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQE 66 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcH
Confidence 346789999999999999999999999999999999999999999998 9999999999999997
No 9
>KOG0080|consensus
Probab=99.78 E-value=9e-19 Score=115.61 Aligned_cols=65 Identities=42% Similarity=0.785 Sum_probs=60.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+|++++|++|||||||+-||..+.|......|+|.+|..+.+.+ +|+.+++.||||||||
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqE 71 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQE 71 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchH
Confidence 3556799999999999999999999999998877778999999999998 9999999999999997
No 10
>KOG0092|consensus
Probab=99.78 E-value=8.2e-19 Score=118.58 Aligned_cols=63 Identities=41% Similarity=0.795 Sum_probs=59.2
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+|++++|+.+||||||+.||..+.|.+...||+|..|.++++.+ ++..++++||||||||
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQE 65 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQE 65 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe-CCcEEEEEEEEcCCcc
Confidence 35789999999999999999999999999877899999999999998 7889999999999998
No 11
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=3.3e-19 Score=143.17 Aligned_cols=123 Identities=24% Similarity=0.372 Sum_probs=87.5
Q ss_pred CccCCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccccCCCcccCCC-CCCceeeEEEE
Q psy10878 2 SYKAKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFN-APPEKLFKVIV 75 (131)
Q Consensus 2 ~~~~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ki~v 75 (131)
+++.++|+++|+||+|+........++ ..++++||.++.| +.++++.+.+.+ +....... ..+....|+++
T Consensus 379 Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~G-I~eLl~~i~~~l--~~~~~~~~a~~~~~~~kI~i 455 (712)
T PRK09518 379 LRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRG-VGDLLDEALDSL--KVAEKTSGFLTPSGLRRVAL 455 (712)
T ss_pred HHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCC-chHHHHHHHHhc--ccccccccccCCCCCcEEEE
Confidence 456789999999999986543333332 6789999999999 999999988776 22111100 01234579999
Q ss_pred EcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 76 IGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+|.+|||||||+|++++..+. ....++++.+.....+.+ ++.. +.+|||||+
T Consensus 456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~~--~~liDTaG~ 508 (712)
T PRK09518 456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGED--WLFIDTAGI 508 (712)
T ss_pred ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCCE--EEEEECCCc
Confidence 999999999999999977642 233344445555566666 6654 569999995
No 12
>KOG0079|consensus
Probab=99.77 E-value=2.4e-19 Score=116.88 Aligned_cols=63 Identities=44% Similarity=0.904 Sum_probs=59.5
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+|.+++|++|||||+|+.+|..+.|..+|..|+|.+|..+++.+ +|..++|+||||||||
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqE 68 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQE 68 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeec-CCcEEEEEEeecccHH
Confidence 34578899999999999999999999999999999999999999998 8999999999999997
No 13
>KOG0087|consensus
Probab=99.76 E-value=2.6e-18 Score=117.65 Aligned_cols=67 Identities=40% Similarity=0.782 Sum_probs=63.1
Q ss_pred CCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 64 ~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...++.+|++++|+++||||-|+.||..++|..+..+|+|++|.+..+.+ +++.++.+||||||||
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQE 74 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQE 74 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchh
Confidence 445788999999999999999999999999998888899999999999998 9999999999999997
No 14
>KOG0095|consensus
Probab=99.75 E-value=3.6e-18 Score=111.72 Aligned_cols=63 Identities=46% Similarity=0.829 Sum_probs=59.7
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|..|||||+|+.||..+-|+.....|+|++|..+++++ +|..++|+||||||||
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagqe 67 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQE 67 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccchH
Confidence 45789999999999999999999999999888899999999999998 9999999999999997
No 15
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=5.8e-18 Score=129.30 Aligned_cols=121 Identities=25% Similarity=0.332 Sum_probs=84.7
Q ss_pred CccCCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEE
Q psy10878 2 SYKAKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVI 76 (131)
Q Consensus 2 ~~~~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vv 76 (131)
+++.++|+++|+||+|+.+.+....++ .+++++|+.++.| +.++++.+........ . .......++++++
T Consensus 105 l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~g-v~~l~~~I~~~~~~~~--~--~~~~~~~~~v~iv 179 (435)
T PRK00093 105 LRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRG-IGDLLDAILEELPEEE--E--EDEEDEPIKIAII 179 (435)
T ss_pred HHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCC-HHHHHHHHHhhCCccc--c--ccccccceEEEEE
Confidence 455689999999999986533233332 5789999999999 9999998877442211 1 1113357999999
Q ss_pred cCCCCCchhhhhhhhhCc-CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 77 GDPTVGKTSFVQRYVQNT-FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
|.+|+|||||++++++.. ......+++..+.....+.+ ++. .+.+|||||.
T Consensus 180 G~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~--~~~lvDT~G~ 231 (435)
T PRK00093 180 GRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DGQ--KYTLIDTAGI 231 (435)
T ss_pred CCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CCe--eEEEEECCCC
Confidence 999999999999999654 33344455554554455555 554 4679999995
No 16
>KOG0086|consensus
Probab=99.73 E-value=3.9e-18 Score=111.93 Aligned_cols=64 Identities=41% Similarity=0.789 Sum_probs=60.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++.+|++++|.+|.|||+|+++|+.+.|......|+|++|..+.+.+ +++.++|+||||||||
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQE 69 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQE 69 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHH
Confidence 456789999999999999999999999999999999999999999988 9999999999999997
No 17
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.72 E-value=4.1e-18 Score=113.60 Aligned_cols=110 Identities=22% Similarity=0.174 Sum_probs=78.3
Q ss_pred cCCCcEEeeccCCCccccccccc--cc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEE
Q psy10878 4 KAKKPILLPSASEDPSIDNWDKA--SW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVI 76 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~~--~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vv 76 (131)
..++|+++|+||+|+.+...... .+ ..++++|+.++.| +.++++.+.+.+ +. .....+++++
T Consensus 39 ~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~g-i~~L~~~l~~~~--~~--------~~~~~~~~~i 107 (156)
T cd01859 39 ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLG-TKILRRTIKELA--KI--------DGKEGKVGVV 107 (156)
T ss_pred hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccccc-HHHHHHHHHHHH--hh--------cCCCcEEEEE
Confidence 35799999999999864321111 11 3568999999999 999998887776 21 2234678999
Q ss_pred cCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 77 GDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
|.+++||||++|++.+.. ...+.++.+.......+.. ++ .+.+|||||
T Consensus 108 g~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~-~~---~~~~~DtpG 155 (156)
T cd01859 108 GYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKI-TS---KIYLLDTPG 155 (156)
T ss_pred CCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEc-CC---CEEEEECcC
Confidence 999999999999998644 3345567665543333333 32 488999999
No 18
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.72 E-value=3.1e-17 Score=112.30 Aligned_cols=63 Identities=30% Similarity=0.602 Sum_probs=56.6
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...+|++++|+++||||||+++|+.+.|...|.||++..+ .+.+.+ ++..+.++||||+|||
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~-~~~~~~l~iwDtaG~e 64 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSP 64 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEE-CCEEEEEEEEECCCch
Confidence 34578999999999999999999999999999999999877 466777 8899999999999996
No 19
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.70 E-value=6.5e-17 Score=110.58 Aligned_cols=60 Identities=37% Similarity=0.769 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|+++||||||++||+++.|...|.||++.++..+.+.+ ++..+.++||||+||+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQR 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCch
Confidence 48999999999999999999999999889999999998788887 8889999999999986
No 20
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.70 E-value=1.3e-17 Score=113.02 Aligned_cols=118 Identities=20% Similarity=0.333 Sum_probs=79.6
Q ss_pred CCCcEEeeccCCCccccccccc--cc-----CCCCccccccCCcccccccccccccccCCCc-ccCCCCCCceeeEEEEE
Q psy10878 5 AKKPILLPSASEDPSIDNWDKA--SW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSI-RKSFNAPPEKLFKVIVI 76 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~--~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ki~vv 76 (131)
.++|+++|+||+|+.+...... ++ ..++++|+.++.| +.++++.+...+ +.. +..........++++++
T Consensus 45 ~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g-i~~L~~~l~~~l--~~~~~~~~~~~~~~~~~~~~~ 121 (171)
T cd01856 45 GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKG-VKKLLKAAKKLL--KDIEKLKAKGLLPRGIRAMVV 121 (171)
T ss_pred cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCccc-HHHHHHHHHHHH--HHHhhhhhcccCCCCeEEEEE
Confidence 3689999999999964422111 11 3578999999999 999888777654 210 11111223455799999
Q ss_pred cCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 77 GDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
|.+|||||||+|++.+..+. ...+..+..+....+.+ + ..+.+|||||-
T Consensus 122 G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~-~---~~~~~iDtpG~ 170 (171)
T cd01856 122 GIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKI-S---PGIYLLDTPGI 170 (171)
T ss_pred CCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEe-c---CCEEEEECCCC
Confidence 99999999999999987664 22344444454455554 3 34789999993
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=1e-16 Score=113.53 Aligned_cols=63 Identities=25% Similarity=0.497 Sum_probs=56.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|+++||||||+++|+.+.|...|.||++.+|. ..+.+ ++..+.++||||+|||
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~-~~~~v~l~iwDTaG~e 72 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLET-EEQRVELSLWDTSGSP 72 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEE-CCEEEEEEEEeCCCch
Confidence 346789999999999999999999999999999999998874 56777 8899999999999986
No 22
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.70 E-value=2.1e-17 Score=110.42 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEEc
Q psy10878 6 KKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIG 77 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG 77 (131)
++|+++|+||+|+.+.+... ..+ ...+++|+..+.| ..++++.+.++++... ....+.++++|
T Consensus 39 ~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~-~~~L~~~l~~~~~~~~--------~~~~~~v~~~G 109 (157)
T cd01858 39 HKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG-KGSLIQLLRQFSKLHS--------DKKQISVGFIG 109 (157)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc-HHHHHHHHHHHHhhhc--------cccceEEEEEe
Confidence 58999999999996543211 111 1246789999999 9999888877653210 12346899999
Q ss_pred CCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 78 DPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 78 ~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
.+|||||||+|++.+..... ..++.|.......+.. ++ .+.+.||||
T Consensus 110 ~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~-~~---~~~liDtPG 156 (157)
T cd01858 110 YPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITL-MK---RIYLIDCPG 156 (157)
T ss_pred CCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEc-CC---CEEEEECcC
Confidence 99999999999998754421 2233333332333333 22 267999999
No 23
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=8.2e-17 Score=109.74 Aligned_cols=59 Identities=32% Similarity=0.643 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|+++||||||+++|.++.|...|.||++.++ .+.+.+ ++..+.++||||+|||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEI-DEQRIELSLWDTSGSP 60 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEE-CCEEEEEEEEECCCch
Confidence 6999999999999999999999999999999998877 467777 8899999999999986
No 24
>KOG0091|consensus
Probab=99.69 E-value=6.9e-18 Score=111.73 Aligned_cols=66 Identities=44% Similarity=0.717 Sum_probs=61.2
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...++++++++|++-||||||+.+|..++|.+-.+||+|++|..+.+++..|..++|++|||||||
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqe 69 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQE 69 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchH
Confidence 356789999999999999999999999999998899999999988887778999999999999997
No 25
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.69 E-value=9.8e-17 Score=111.50 Aligned_cols=59 Identities=49% Similarity=0.853 Sum_probs=55.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++++|++|||||||++||..+.|...|.+|++.+|..+.+.+ ++..+.++||||+|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCch
Confidence 5899999999999999999999999899999999998888888 8889999999999996
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.69 E-value=1.2e-16 Score=109.95 Aligned_cols=60 Identities=38% Similarity=0.622 Sum_probs=54.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+|++++|+++||||||++||..+.|...|.||++..+ .+.+.+ ++..+.++||||+|||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAV-DGRTVSLNLWDTAGQE 62 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEE-CCEEEEEEEEECCCch
Confidence 47999999999999999999999999989999999776 455666 8889999999999996
No 27
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.69 E-value=1.2e-16 Score=108.82 Aligned_cols=59 Identities=41% Similarity=0.633 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|+++||||||+.+|..+.|..+|.||++..+ .+.+.+ ++..++++||||+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~-~~~~v~l~i~Dt~G~~ 60 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSV-DGNTVNLGLWDTAGQE 60 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEE-CCEEEEEEEEECCCCc
Confidence 6899999999999999999999999989999999877 456777 8889999999999986
No 28
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.69 E-value=1.1e-16 Score=108.18 Aligned_cols=59 Identities=47% Similarity=0.853 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
||+++|++|||||||+++|+++.|...|.||++.++..+.+.+ +|..+.++||||+|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChH
Confidence 7999999999999999999999999999999999998888887 8888999999999985
No 29
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.68 E-value=3.7e-17 Score=118.47 Aligned_cols=119 Identities=22% Similarity=0.346 Sum_probs=78.0
Q ss_pred CCcEEeeccCCCccccccccc---cc----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEEcC
Q psy10878 6 KKPILLPSASEDPSIDNWDKA---SW----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIGD 78 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~~---~~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~ 78 (131)
++|+++|+||+|+.+...... .+ ..++++|+.++.| +.++++.+.+.+................++++++|.
T Consensus 48 ~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g-i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 126 (276)
T TIGR03596 48 NKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKG-VKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGI 126 (276)
T ss_pred CCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCccc-HHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECC
Confidence 689999999999965431111 11 2568999999999 999888776665211111111111235689999999
Q ss_pred CCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 79 PTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 79 ~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
||||||||+|++.+..... ..+..|.+.....+.+ +. .+.++||||.
T Consensus 127 ~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~-~~---~~~l~DtPG~ 173 (276)
T TIGR03596 127 PNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKL-SD---GLELLDTPGI 173 (276)
T ss_pred CCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEe-CC---CEEEEECCCc
Confidence 9999999999998765422 1233343444445554 33 3689999995
No 30
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.68 E-value=2.3e-16 Score=108.55 Aligned_cols=63 Identities=30% Similarity=0.636 Sum_probs=57.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+.+||+++|+++||||||+.+|.++.|...+.++++.++....+.+ ++..+.+++|||+||+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQG 66 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 35689999999999999999999999998888899999998888887 8889999999999986
No 31
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.68 E-value=6.7e-17 Score=106.32 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=60.8
Q ss_pred CCCcEEeeccCCCcccccccc---ccc----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEEc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIG 77 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG 77 (131)
.++|+++|+||+|+.+.+... ..+ .+++++|+.++.+ +++++|
T Consensus 41 ~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~------------------------------~~~~~G 90 (141)
T cd01857 41 PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA------------------------------TIGLVG 90 (141)
T ss_pred CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc------------------------------EEEEEC
Confidence 389999999999996543211 111 3345666654322 699999
Q ss_pred CCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 78 DPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 78 ~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.+|||||||+|++.+..+. ......+.+.....+.+ ++ .+.||||||-
T Consensus 91 ~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~-~~---~~~i~DtpG~ 138 (141)
T cd01857 91 YPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFL-TP---TITLCDCPGL 138 (141)
T ss_pred CCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEe-CC---CEEEEECCCc
Confidence 9999999999999977654 22233343344455555 44 3789999994
No 32
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.67 E-value=2.3e-16 Score=107.14 Aligned_cols=59 Identities=37% Similarity=0.562 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||+++|..+.|...|.||++..+. ..+.+ ++..+.++||||+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQE 60 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCcc
Confidence 69999999999999999999999998899999998774 45666 7888999999999986
No 33
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.67 E-value=2e-16 Score=105.37 Aligned_cols=60 Identities=30% Similarity=0.711 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|+++||||||+++++++.+...+.||++.++..+.+.+ ++..+.+++|||+|++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV-RNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCeEEEEEEEECCccH
Confidence 58999999999999999999999999899999999998888887 7889999999999974
No 34
>KOG0093|consensus
Probab=99.67 E-value=2.3e-16 Score=102.95 Aligned_cols=64 Identities=45% Similarity=0.877 Sum_probs=59.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+.+|++++|++.||||||+.||++..|...+..|+|++|..+++.. ..+.++++||||+|||
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQiwDTagqE 81 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQIWDTAGQE 81 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEEEecccch
Confidence 456789999999999999999999999999999999999999999876 6788999999999998
No 35
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.67 E-value=7.4e-17 Score=110.82 Aligned_cols=105 Identities=22% Similarity=0.324 Sum_probs=73.0
Q ss_pred CCCcEEeeccCCCcccccccc---c--------c-c----CCCCccccccCCcccccccccccccccCCCcccCCCCCCc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---A--------S-W----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPE 68 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~--------~-~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (131)
.++|+++|+||+|+....... . . . ..++++|+.++.| +.++++.+.+.+ +
T Consensus 60 ~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~g-i~eL~~~l~~~l--~----------- 125 (190)
T cd01855 60 GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWG-VEELINAIKKLA--K----------- 125 (190)
T ss_pred CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCC-HHHHHHHHHHHh--h-----------
Confidence 478999999999986432111 0 0 1 3578999999999 999998887776 2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC---------CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF---------KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~---------~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
....++++|.+|||||||+|.+.+... ..+..| |.......+.+ +. .+.|+||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~-~~---~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP--GTTLDLIKIPL-GN---GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC--CeeeeeEEEec-CC---CCEEEeCcC
Confidence 124699999999999999999986432 222223 32333334443 32 368999999
No 36
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.67 E-value=1.9e-16 Score=111.45 Aligned_cols=59 Identities=29% Similarity=0.659 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|+++||||||+++|..+.|...|.||++.+|. ..+.+ ++..+.|+||||+|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e 60 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSS 60 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcH
Confidence 69999999999999999999999999999999998874 56777 8899999999999985
No 37
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.67 E-value=3.1e-16 Score=105.13 Aligned_cols=61 Identities=44% Similarity=0.846 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|++|||||||+++|..+.|...+.+|++.++....+.+ ++..+.+++|||+||+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQE 62 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 479999999999999999999999998888899999988777877 8888999999999985
No 38
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.66 E-value=6.9e-17 Score=117.65 Aligned_cols=119 Identities=24% Similarity=0.376 Sum_probs=78.1
Q ss_pred CCcEEeeccCCCcccccccc---ccc----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEEcC
Q psy10878 6 KKPILLPSASEDPSIDNWDK---ASW----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIGD 78 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~---~~~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~ 78 (131)
++|+++|+||+|+.+..... ..+ ..++++|+.++.| +.++++.+...+.....+..........++++++|.
T Consensus 51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~g-i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~ 129 (287)
T PRK09563 51 NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQG-VKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGI 129 (287)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCccc-HHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECC
Confidence 79999999999996542111 111 2468899999999 998888776665211111111112345689999999
Q ss_pred CCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 79 PTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 79 ~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
||||||||+|++.+..... ..+..|.+.....+.+ ++ .+.++||||-
T Consensus 130 pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~-~~---~~~l~DtPGi 176 (287)
T PRK09563 130 PNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKL-GK---GLELLDTPGI 176 (287)
T ss_pred CCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEe-CC---cEEEEECCCc
Confidence 9999999999999765422 2233344444445544 33 3689999994
No 39
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=3.5e-16 Score=108.24 Aligned_cols=60 Identities=60% Similarity=1.120 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecC-CeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRD-QQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|+++.|...+.||++.++..+.+.+ + +..+.++||||+|||
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~-~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEW-DPNTVVRLQLWDIAGQE 61 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCCCEEEEEEEECCCch
Confidence 58999999999999999999999998889999999988888877 5 788999999999985
No 40
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=3.5e-16 Score=105.03 Aligned_cols=62 Identities=42% Similarity=0.895 Sum_probs=56.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.+||+++|++|||||||+++|.++.|...|.||++.++....+.+ ++..+.+++|||+||+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQE 63 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEEEeCCchH
Confidence 4689999999999999999999999999999999999888788887 7888999999999985
No 41
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.66 E-value=5.2e-16 Score=104.26 Aligned_cols=63 Identities=44% Similarity=0.746 Sum_probs=57.2
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+..+|++++|+++||||||+++|.++.|...+.++++.++..+.+.+ ++..+.++||||+|||
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQE 65 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChH
Confidence 45689999999999999999999999998888899998887788887 8889999999999985
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.65 E-value=5.9e-16 Score=103.75 Aligned_cols=60 Identities=47% Similarity=0.935 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||++++.+++|...|.||++.++....+.. ++..+.+++|||+|++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChH
Confidence 69999999999999999999999998889999998887777776 7788999999999975
No 43
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.65 E-value=8e-17 Score=107.45 Aligned_cols=120 Identities=23% Similarity=0.169 Sum_probs=74.9
Q ss_pred ccCCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEE
Q psy10878 3 YKAKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVI 74 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 74 (131)
+..++|+++|+||+|+...+... ..+ ..++++|+.++.| +.++++.+.+.+..................++
T Consensus 26 ~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~g-i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 104 (155)
T cd01849 26 KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQG-IEKKESAFTKQTNSNLKSYAKDGKLKKSITVG 104 (155)
T ss_pred hcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcC-hhhHHHHHHHHhHHHHHHHHhccccccCcEEE
Confidence 45689999999999996543111 111 4578999999999 99888877554310000000001123456799
Q ss_pred EEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 75 VIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 75 vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
++|.+|+|||||+|.+.+... .....+.+..+. ..+.+ + ..+.+.||||
T Consensus 105 ~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~-~---~~~~liDtPG 154 (155)
T cd01849 105 VIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKL-D---NKIKLLDTPG 154 (155)
T ss_pred EEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEe-c---CCEEEEECCC
Confidence 999999999999999986542 222223333222 22333 2 2378999999
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.65 E-value=4.8e-16 Score=103.39 Aligned_cols=59 Identities=32% Similarity=0.585 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||+++|+.+.|...+.||++..+ .+.+.+ ++..+.++||||+|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEV-DGQQCMLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCcc
Confidence 6999999999999999999999999888889987444 566777 8888999999999986
No 45
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=7.9e-16 Score=103.87 Aligned_cols=63 Identities=21% Similarity=0.419 Sum_probs=56.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||+++|+++.|. ..|.||++.++....+.+ ++..+.+.+|||+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDE 65 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcc
Confidence 35789999999999999999999999998 889999999887777877 7888899999999985
No 46
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.64 E-value=7.4e-16 Score=103.08 Aligned_cols=60 Identities=42% Similarity=0.836 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|.+++|...+.||++.++..+.+.+ ++..+.+++|||+||+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQE 60 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 48999999999999999999999998888999999888788887 7888999999999985
No 47
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.64 E-value=6.3e-16 Score=107.44 Aligned_cols=61 Identities=30% Similarity=0.566 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEec----CCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWR----DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|+++||||||+++|+++.|...+.||++.++..+.+.+. +++.+.++||||+|||
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 589999999999999999999999998999999988877777662 2578999999999986
No 48
>KOG0393|consensus
Probab=99.64 E-value=2.6e-16 Score=107.97 Aligned_cols=62 Identities=37% Similarity=0.626 Sum_probs=55.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+|+++||+.+||||+|+..|..+.|.+.|.||+.++| ...+.+.+|+.+.|.+|||||||
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqe 64 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQE 64 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCc
Confidence 468999999999999999999999999999999999777 56666624999999999999997
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.64 E-value=8.3e-16 Score=107.97 Aligned_cols=63 Identities=37% Similarity=0.610 Sum_probs=57.3
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+|++++|++|||||||+++|+.+.|...+.||++.++....+.. ++..+.++||||+|||
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQE 73 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE-CCeEEEEEEEECCCch
Confidence 56789999999999999999999999999899999999888777776 6778999999999986
No 50
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.64 E-value=9.7e-16 Score=105.98 Aligned_cols=62 Identities=47% Similarity=0.920 Sum_probs=56.6
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|||||||+++|.++.|...+.||++.++....+.+ ++..+.+.||||+||+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQE 66 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCch
Confidence 4689999999999999999999999998889999998888788877 7888999999999985
No 51
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.64 E-value=7.8e-16 Score=107.67 Aligned_cols=61 Identities=46% Similarity=0.843 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||+++|.++.|...|.||++.++..+.+.+.++..+.++||||+||+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~ 61 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS 61 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH
Confidence 5899999999999999999999999999999999999888888744467999999999985
No 52
>KOG0097|consensus
Probab=99.64 E-value=3.3e-16 Score=101.78 Aligned_cols=64 Identities=42% Similarity=0.771 Sum_probs=60.2
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+.+|.+++|+-|||||+|+++|....|......|+|++|..+.+++ .|..++++||||+|||
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqe 71 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQE 71 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHH
Confidence 557899999999999999999999999999888899999999999998 8999999999999997
No 53
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=9.8e-16 Score=103.79 Aligned_cols=63 Identities=48% Similarity=0.810 Sum_probs=55.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecC---------CeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRD---------QQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---------~~~~~l~i~Dt~Gqe 131 (131)
+.+|++++|++|||||||+++|.++.|...+.+|++.++....+.+.. +..+.++||||+|||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 74 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE 74 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH
Confidence 568999999999999999999999999999999999988777776522 457899999999985
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.64 E-value=1e-15 Score=101.40 Aligned_cols=59 Identities=32% Similarity=0.553 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|+++.|...+.||.+..+ .+.+.+ ++..+.+++|||+|+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCc
Confidence 6899999999999999999999999888889988666 566666 7888899999999986
No 55
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=1.2e-15 Score=102.06 Aligned_cols=61 Identities=44% Similarity=0.923 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+|++++|++|||||||++++.++.|...+.+|.+.++..+.+.+ ++..+.+++|||+|++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 479999999999999999999999998888899998888888887 7888999999999985
No 56
>PTZ00369 Ras-like protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=104.67 Aligned_cols=61 Identities=30% Similarity=0.544 Sum_probs=54.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+|++++|++|||||||+++|..+.|...+.||++..+ .+.+.+ ++..+.++||||+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVI-DEETCLLDILDTAGQE 64 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEE-CCEEEEEEEEeCCCCc
Confidence 468999999999999999999999999888999998777 566777 7888999999999986
No 57
>PLN03110 Rab GTPase; Provisional
Probab=99.63 E-value=1.9e-15 Score=105.93 Aligned_cols=64 Identities=39% Similarity=0.773 Sum_probs=58.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+.+|++++|++|||||||+++|.++.+...+.+|++.++..+.+.+ ++..+.++||||+||+
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQE 72 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 456789999999999999999999999998888899999998888888 8888999999999985
No 58
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=1.1e-15 Score=106.83 Aligned_cols=62 Identities=47% Similarity=0.813 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|++|||||||+++|.++.+...+.||++.++..+.+.+.++..+.+++|||+||+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 58999999999999999999999999888889999998888887645778999999999985
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.63 E-value=1.1e-15 Score=102.03 Aligned_cols=60 Identities=32% Similarity=0.552 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
++||+++|++|||||||+++|+.+.+...+.||++..+ .+.+.+ ++..+.++||||+||+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DGQQCMLEILDTAGTE 60 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE-CCEEEEEEEEECCCcc
Confidence 36999999999999999999999999888889998766 466777 7888999999999985
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.63 E-value=1.6e-15 Score=101.45 Aligned_cols=60 Identities=28% Similarity=0.617 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|+.+.|...+.++.+.++....+.+ ++..+.+++|||+|||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCch
Confidence 48999999999999999999999998888888887776666776 7888999999999986
No 61
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=1.4e-15 Score=101.77 Aligned_cols=62 Identities=48% Similarity=0.870 Sum_probs=55.9
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.+|++++|++|+|||||++++..+.+...+.+|.+.++..+.+.+ ++..+.++||||+||+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQE 63 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChH
Confidence 4689999999999999999999999998888899998888888887 7888899999999985
No 62
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=1.3e-15 Score=103.20 Aligned_cols=60 Identities=22% Similarity=0.442 Sum_probs=53.1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|++|||||||+++|..+.|...+.||++..+ .+.+.+ ++..+.++||||+||+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQA 61 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCch
Confidence 47999999999999999999999999888999998766 455666 8888999999999985
No 63
>PLN00023 GTP-binding protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=111.13 Aligned_cols=68 Identities=28% Similarity=0.573 Sum_probs=58.7
Q ss_pred CCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecC------------CeEEEEEEEeCCCCC
Q psy10878 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRD------------QQKIKLQLWDIAGQN 131 (131)
Q Consensus 64 ~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~l~i~Dt~Gqe 131 (131)
...+...+||+++|+.+||||||+++|+++.|...+.+|+|.++..+.+.+.+ ++.+.++||||+|||
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 34466789999999999999999999999999988999999998878777621 357899999999996
No 64
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=1.7e-15 Score=101.25 Aligned_cols=62 Identities=45% Similarity=0.856 Sum_probs=56.1
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.+|++++|+++||||||++++.++.+...+.||.+.++....+.. ++..+.+++|||+||+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQE 63 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChH
Confidence 3579999999999999999999999998888899999888888887 7888999999999985
No 65
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=1.6e-15 Score=103.95 Aligned_cols=60 Identities=38% Similarity=0.737 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCC-CccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKK-DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|+++.|.. .|.+|++.++..+.+.+ ++..+.+++|||+|++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCch
Confidence 489999999999999999999999874 68899998887778887 8889999999999985
No 66
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.62 E-value=1.7e-15 Score=102.01 Aligned_cols=61 Identities=48% Similarity=0.853 Sum_probs=56.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|++|||||||+++|+.+.+...+.++++.++..+.+.+ ++..+.++||||+||+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQE 62 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChH
Confidence 479999999999999999999999998888999999988888888 8888999999999985
No 67
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.62 E-value=1.7e-15 Score=102.76 Aligned_cols=59 Identities=39% Similarity=0.630 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||+.+|+.+.|..+|.||++..+ ...+.+ ++..+.++||||+||+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQE 60 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEE-CCEEEEEEEEECCCch
Confidence 6899999999999999999999999989999987555 456666 8888999999999985
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.62 E-value=1.5e-15 Score=101.03 Aligned_cols=60 Identities=50% Similarity=0.887 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecC--CeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRD--QQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++++|||||++++.++.|...+.||++.++....+.+ + +..+.++||||+|||
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~ 62 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFL-RQSDEDVRLMLWDTAGQE 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEE-cCCCCEEEEEEeeCCchH
Confidence 48999999999999999999999998888999999987777776 5 678999999999985
No 69
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.62 E-value=2e-15 Score=101.52 Aligned_cols=60 Identities=38% Similarity=0.726 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||+++++.+.+...+.||++.++....+.. ++..+.+++|||+|||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQE 60 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCCh
Confidence 58999999999999999999999988889999998887777776 7788999999999986
No 70
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.62 E-value=1.7e-15 Score=100.83 Aligned_cols=59 Identities=39% Similarity=0.760 Sum_probs=55.8
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
||+++|+++||||||+++|.++.|...+.+|++.++..+.+.+ ++..+.++|||++|++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSG
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccc
Confidence 7999999999999999999999999999999999998899988 8999999999999985
No 71
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.62 E-value=1.8e-15 Score=100.90 Aligned_cols=60 Identities=33% Similarity=0.569 Sum_probs=52.4
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|++|||||||+++|+.+.+...+.||++ ++....+.+ ++..+.++||||+|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTE 60 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcc
Confidence 36999999999999999999999999888888876 444567777 8888999999999985
No 72
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=2.2e-15 Score=103.05 Aligned_cols=60 Identities=47% Similarity=0.870 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|+++||||||+++|.++.|...|.+|++.++..+.+.+ ++..+.+++|||+|++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 48999999999999999999999998888999999888788877 7888999999999985
No 73
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.61 E-value=3e-15 Score=99.64 Aligned_cols=60 Identities=45% Similarity=0.896 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|+++||||||++++.++.+...+.++.+.++....+.+ ++..+.+++|||+||+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEECcchH
Confidence 58999999999999999999999998888899998888787877 7888999999999984
No 74
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.61 E-value=3.9e-15 Score=100.10 Aligned_cols=62 Identities=40% Similarity=0.763 Sum_probs=55.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|.+|||||||++++.++++...+.++.+.++....+.+ ++..+.+.||||+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQE 64 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 4589999999999999999999999998888899998888788877 7888899999999975
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.60 E-value=2.4e-15 Score=104.17 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+||+++|++|||||||+++|+++.|...+.||++.++....+.+ +|..+.++||||+|+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~ 59 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNM 59 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCc
Confidence 58999999999999999999999998889999987776667777 888899999999985
No 76
>PRK12289 GTPase RsgA; Reviewed
Probab=99.60 E-value=1.1e-15 Score=114.00 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=54.7
Q ss_pred CCCcEEeeccCCCcccccccc---c---cc-CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEEc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---A---SW-ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIG 77 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~---~~-~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG 77 (131)
.++|+++|+||+||....... . .+ ..++++|+.++.| +.++++.+... .++|+|
T Consensus 119 ~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~G-I~eL~~~L~~k------------------i~v~iG 179 (352)
T PRK12289 119 TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIG-LEALLEQLRNK------------------ITVVAG 179 (352)
T ss_pred CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCC-HHHHhhhhccc------------------eEEEEe
Confidence 589999999999997543211 1 12 4588999999999 88877655432 279999
Q ss_pred CCCCCchhhhhhhhhCc
Q psy10878 78 DPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 78 ~~~vGKSsli~~~~~~~ 94 (131)
.+|||||||+|+++...
T Consensus 180 ~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 180 PSGVGKSSLINRLIPDV 196 (352)
T ss_pred CCCCCHHHHHHHHcCcc
Confidence 99999999999999643
No 77
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.60 E-value=4.3e-15 Score=98.69 Aligned_cols=60 Identities=42% Similarity=0.870 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|+++||||||++++.+.++...+.++.+.++....+.+ ++..+.+++|||+|++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 48999999999999999999999998888899999998888887 7778899999999975
No 78
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.59 E-value=5.1e-15 Score=98.51 Aligned_cols=61 Identities=39% Similarity=0.825 Sum_probs=55.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
++|++++|++++|||||+++++++.+...+.++.+.++....+.+ ++..+.+.+|||+|++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~ 61 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQE 61 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchH
Confidence 379999999999999999999999988778899998888888888 8888999999999985
No 79
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=5.1e-15 Score=101.57 Aligned_cols=58 Identities=38% Similarity=0.621 Sum_probs=51.8
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|++++|++|||||||+++|.++.|...+.||++..+. ..+.+ ++..+.++||||+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~-~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFV-DGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEE-CCEEEEEEEEECCCCh
Confidence 7999999999999999999999999889999988774 55566 7888999999999986
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.59 E-value=3.5e-15 Score=106.61 Aligned_cols=59 Identities=29% Similarity=0.629 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|+++.|...|.||++ ++..+.+.+ ++..+.++||||+|++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNH 59 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCCh
Confidence 4899999999999999999999999888889987 555677777 8888999999999985
No 81
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.59 E-value=5.3e-15 Score=98.61 Aligned_cols=61 Identities=43% Similarity=0.719 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhC--cCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQN--TFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|+++||||||++++..+ .|..++.+|++.++..+.+.+.++..+.+.+|||+|++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH
Confidence 48999999999999999999854 68888999999998777777644678999999999975
No 82
>KOG0081|consensus
Probab=99.59 E-value=1.3e-16 Score=105.37 Aligned_cols=65 Identities=45% Similarity=0.775 Sum_probs=57.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEec--------CCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWR--------DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------~~~~~~l~i~Dt~Gqe 131 (131)
..+.+|++.+|++||||||++++|..++|..+...|+|++|..+.+.+. .+..+.|++|||||||
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE 78 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE 78 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH
Confidence 4567899999999999999999999999999999999999999888763 2356899999999997
No 83
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=5.1e-15 Score=100.96 Aligned_cols=60 Identities=35% Similarity=0.589 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|.++.|...+.||++.++. ..+...++..+.++||||+|||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCch
Confidence 48999999999999999999999999899999988874 3455524778999999999985
No 84
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=5.1e-15 Score=101.66 Aligned_cols=60 Identities=47% Similarity=0.844 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|.++.+. ..+.+|++.++..+.+.+ ++..+.++||||+||+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 61 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQE 61 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 58999999999999999999998885 367889998887777777 8888999999999985
No 85
>PLN03108 Rab family protein; Provisional
Probab=99.58 E-value=8.2e-15 Score=102.23 Aligned_cols=62 Identities=40% Similarity=0.761 Sum_probs=56.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.+||+++|+++||||||+++|..++|...+.+|++.++....+.+ ++..+.+++|||+|++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQE 66 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 4689999999999999999999999998888899999988778887 8888999999999985
No 86
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.58 E-value=9e-15 Score=97.97 Aligned_cols=59 Identities=31% Similarity=0.599 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|+++.|...+.||.+..+ .+.+.. ++..+.+++|||+||+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 60 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKNICTLQITDTTGSH 60 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCC
Confidence 6899999999999999999999999888889888666 455555 6778999999999986
No 87
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.57 E-value=1.1e-14 Score=96.94 Aligned_cols=60 Identities=32% Similarity=0.540 Sum_probs=52.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+|++++|++|+|||||+++|+++.+...+.+|++..+ .+...+ ++..+.+++|||||++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEI-DGQWAILDILDTAGQE 61 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEE-CCEEEEEEEEECCCCc
Confidence 47999999999999999999999988888888888655 455666 8888999999999985
No 88
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.57 E-value=7.6e-15 Score=97.87 Aligned_cols=59 Identities=32% Similarity=0.583 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||++++.++.+...+.+|++..+ .+.+.+ ++..+.+++|||+||+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEI-DGEVCLLDILDTAGQE 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCcc
Confidence 4899999999999999999999999888888887555 455666 7788999999999986
No 89
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.57 E-value=5.3e-15 Score=101.50 Aligned_cols=58 Identities=36% Similarity=0.512 Sum_probs=50.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|++++|++|||||||+++|+.+.|...+.||++..+ .+.+.+ ++..+.++||||+|++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEE-CCEEEEEEEEECCCch
Confidence 589999999999999999999999888889988666 345566 7888999999999985
No 90
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.57 E-value=3.8e-15 Score=101.16 Aligned_cols=56 Identities=30% Similarity=0.450 Sum_probs=39.1
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
...++++++|.||||||||+|++.+... ... +..|.......+.+ +. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~--~~pg~T~~~~~~~~-~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG--ATPGVTKSMQEVHL-DK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec--CCCCeEcceEEEEe-CC---CEEEEECcC
Confidence 3457899999999999999999996544 323 33343343444444 33 378999999
No 91
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.57 E-value=2e-15 Score=107.73 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=54.7
Q ss_pred cCCCcEEeeccCCCcccccccc----ccc----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEE
Q psy10878 4 KAKKPILLPSASEDPSIDNWDK----ASW----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~----~~~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v 75 (131)
..+.|+++|+||+||.+..... ..| ..++.+|++++.| +.++++.+.+. .+++
T Consensus 65 ~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g-i~eLf~~l~~~------------------~~~~ 125 (245)
T TIGR00157 65 AQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG-LKELIEALQNR------------------ISVF 125 (245)
T ss_pred HCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh-HHHHHhhhcCC------------------EEEE
Confidence 3578999999999996432111 122 4578899999999 88876654432 4899
Q ss_pred EcCCCCCchhhhhhhhhCc
Q psy10878 76 IGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~ 94 (131)
+|.+|||||||+|++++..
T Consensus 126 ~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 126 AGQSGVGKSSLINALDPSV 144 (245)
T ss_pred ECCCCCCHHHHHHHHhhhh
Confidence 9999999999999999653
No 92
>PLN03118 Rab family protein; Provisional
Probab=99.57 E-value=2.2e-14 Score=99.95 Aligned_cols=63 Identities=37% Similarity=0.735 Sum_probs=55.2
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|+++.+. .+.|+.+.++....+.+ ++..+.+.||||+||+
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQE 73 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEE-CCEEEEEEEEECCCch
Confidence 446789999999999999999999988774 67899998887777877 7778999999999985
No 93
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.57 E-value=1.1e-14 Score=98.14 Aligned_cols=59 Identities=31% Similarity=0.588 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.|++++|+++||||||+++|.++.|...|.||++..+. ..+.+ ++..+.+.+|||+|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEE-CCEEEEEEEEeCCCch
Confidence 48999999999999999999999998889999887663 45666 7888999999999985
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.56 E-value=1.3e-14 Score=97.30 Aligned_cols=60 Identities=48% Similarity=0.874 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|.+|||||||++++.+..+...+.++++.++..+.+.+ ++..+.+++|||+|++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQE 60 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChH
Confidence 48999999999999999999999888888899998888788877 7788999999999974
No 95
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.56 E-value=1.5e-14 Score=96.75 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=49.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||+.+|+.+.|...+.|+ +..+ .+.+.+ +|..+.+++|||+||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~-~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLV-DGQSHLLLIRDEGGAP 58 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEE-CCEEEEEEEEECCCCC
Confidence 48999999999999999999999998776555 4455 466777 8888999999999985
No 96
>KOG0083|consensus
Probab=99.56 E-value=1.2e-15 Score=98.26 Aligned_cols=57 Identities=40% Similarity=0.826 Sum_probs=51.9
Q ss_pred EEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 74 IVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 74 ~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+++|++++|||+|+-||-.+.|. ....+|+|++|..+.+.. +++.+++++|||+|||
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqe 58 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQE 58 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchH
Confidence 47899999999999999988884 467799999999999988 9999999999999997
No 97
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.56 E-value=1.6e-14 Score=96.99 Aligned_cols=59 Identities=32% Similarity=0.609 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|.+|+|||||+++|.++.+...+.||++..+ .+.+.+ ++..+.+++|||+|++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEI-DGRQCDLEILDTAGTE 60 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE-CCEEEEEEEEeCCCcc
Confidence 6899999999999999999999999888889988665 566777 7888999999999985
No 98
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.56 E-value=1.9e-14 Score=97.18 Aligned_cols=59 Identities=36% Similarity=0.522 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|+|||||+++|.++.|...|.||... +....+.+ ++..+.+++|||+||+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVVVLV-DGKPVRLQLCDTAGQD 59 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEE-CCEEEEEEEEECCCCh
Confidence 58999999999999999999999999889888754 44556776 7888999999999985
No 99
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.55 E-value=1.6e-14 Score=101.63 Aligned_cols=60 Identities=23% Similarity=0.436 Sum_probs=52.6
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||+++|..+.+. ..+.++.+.++..+.+.+ ++..+.+++|||+||+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV-DGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE-CCEEEEEEEEeCCCcc
Confidence 58999999999999999999988886 677788776777788887 7888999999999986
No 100
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.55 E-value=2.3e-14 Score=95.27 Aligned_cols=60 Identities=48% Similarity=0.949 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|.+++|||||++++.+..+...+.++++.++....+.+ ++..+.+++|||+|++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQE 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChH
Confidence 58999999999999999999998888888899998888888887 7888899999999974
No 101
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.55 E-value=2.3e-14 Score=95.30 Aligned_cols=60 Identities=45% Similarity=0.869 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|.+|+|||||++++.+..+...+.|+.+.++....+.+ ++..+.+++|||+|++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCch
Confidence 58999999999999999999998887778899998887777777 7788999999999985
No 102
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=3e-14 Score=99.53 Aligned_cols=64 Identities=38% Similarity=0.586 Sum_probs=57.2
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+|++++|++|||||||+++++.+.+...|.||++.++....+.. ++..+.+++|||+||+
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQE 69 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCch
Confidence 445689999999999999999999999998899999999988777776 7788999999999985
No 103
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.54 E-value=2.1e-14 Score=96.70 Aligned_cols=57 Identities=40% Similarity=0.683 Sum_probs=50.2
Q ss_pred EEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|+++|++|||||||+++|.++.|...+.|+++..+ ...+.+ ++..+.+++|||+||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEV-DGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEE-CCEEEEEEEEECCCCc
Confidence 58999999999999999999999888889988766 456666 7888999999999986
No 104
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.54 E-value=2.8e-14 Score=96.06 Aligned_cols=59 Identities=34% Similarity=0.545 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|.+|+|||||+++|..+.|...+.||++..+ ...+.+ ++..+.+++|||+|++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQE 59 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcc
Confidence 5899999999999999999999999888888887555 446666 7888999999999985
No 105
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.53 E-value=6.5e-15 Score=108.80 Aligned_cols=118 Identities=22% Similarity=0.294 Sum_probs=76.9
Q ss_pred CCCcEEeeccCCCccccccccccc------C---CCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEE
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW------E---NVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~------~---~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v 75 (131)
.++|.++|+||+|+.+... ..+| . .++.+++..+.+ ...+...+....................+++++
T Consensus 60 ~~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~v 137 (322)
T COG1161 60 KEKPKLLVLNKADLAPKEV-TKKWKKYFKKEEGIKPIFVSAKSRQG-GKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGV 137 (322)
T ss_pred ccCCcEEEEehhhcCCHHH-HHHHHHHHHhcCCCccEEEEeecccC-ccchHHHHHHHHHHHHHHHhhcCCCccceEEEE
Confidence 3678899999999987653 3333 2 367888888888 776664332221000000000122344578999
Q ss_pred EcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 76 IGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
+|.||||||||||++++.... ...+..|.+-..+.+.+.++ +.|+||||
T Consensus 138 vG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~----i~LlDtPG 186 (322)
T COG1161 138 VGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG----IYLLDTPG 186 (322)
T ss_pred EcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC----eEEecCCC
Confidence 999999999999999976552 33444566666667766333 78999999
No 106
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=2.7e-14 Score=98.70 Aligned_cols=61 Identities=30% Similarity=0.379 Sum_probs=46.1
Q ss_pred eeEEEEEcCCCCCchhhhh-hhhhC-----cCCCCccCCcee-EeEEEE--------EEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQ-RYVQN-----TFKKDYKGTVGV-DFALKI--------VKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~-~~~~~-----~~~~~~~~t~~~-~~~~~~--------~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|+++||||||+. ++.++ .|...|.||++. +..... +.+ +|..+.++||||||||
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~ 77 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDH 77 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCCh
Confidence 4799999999999999996 55543 355678899962 322222 144 8889999999999985
No 107
>PRK12288 GTPase RsgA; Reviewed
Probab=99.52 E-value=6.6e-15 Score=109.67 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=55.1
Q ss_pred cCCCcEEeeccCCCcccccc--cc----ccc----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEE
Q psy10878 4 KAKKPILLPSASEDPSIDNW--DK----ASW----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKV 73 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~--~~----~~~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 73 (131)
..++|+++|+||+|+.+... .. ..+ ..++++|+.++.| +.++++.+.... +
T Consensus 148 ~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G-ideL~~~L~~ki------------------~ 208 (347)
T PRK12288 148 TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG-LEELEAALTGRI------------------S 208 (347)
T ss_pred hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC-HHHHHHHHhhCC------------------E
Confidence 35789999999999965331 11 111 4678999999999 988876654332 7
Q ss_pred EEEcCCCCCchhhhhhhhhCc
Q psy10878 74 IVIGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 74 ~vvG~~~vGKSsli~~~~~~~ 94 (131)
+++|.+|||||||+|++++..
T Consensus 209 ~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 209 IFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEECCCCCCHHHHHHHhcccc
Confidence 899999999999999999653
No 108
>KOG0088|consensus
Probab=99.52 E-value=4.5e-15 Score=98.05 Aligned_cols=66 Identities=36% Similarity=0.597 Sum_probs=60.3
Q ss_pred CCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 65 APPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 65 ~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+...||++++|+..||||||+-||+.++|.....+|+...|..+.+.+ ++....|.||||||||
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~-ed~ra~L~IWDTAGQE 73 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNV-EDCRADLHIWDTAGQE 73 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccc-ccceeeeeeeeccchH
Confidence 34678899999999999999999999999999888889888898999887 7789999999999997
No 109
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.52 E-value=3.1e-14 Score=98.85 Aligned_cols=55 Identities=36% Similarity=0.709 Sum_probs=50.8
Q ss_pred EcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 76 IGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|+++||||||+++|+.+.|...|.||++.++..+.+.+ ++..+.++||||+|||
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e 55 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQE 55 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCch
Confidence 699999999999999999998889999999998888887 8889999999999986
No 110
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.51 E-value=2.9e-14 Score=95.40 Aligned_cols=58 Identities=29% Similarity=0.568 Sum_probs=50.1
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
||+++|++|||||||+++++.+.|...|.++.+..+ ...+.+ ++..+.+++|||+|++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~ 58 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTI-DGEQVSLEILDTAGQQ 58 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEE-CCEEEEEEEEECCCCc
Confidence 589999999999999999999989888888886555 455666 8888999999999985
No 111
>PRK13796 GTPase YqeH; Provisional
Probab=99.51 E-value=1.8e-14 Score=108.18 Aligned_cols=105 Identities=22% Similarity=0.317 Sum_probs=70.6
Q ss_pred CCCcEEeeccCCCcccccc---ccccc------------CCCCccccccCCcccccccccccccccCCCcccCCCCCCce
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW------------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEK 69 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~------------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (131)
.++|+++|+||+|+..... ...+| .+++++||..+.| +.++++.+.+.. .
T Consensus 95 ~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~g-I~eL~~~I~~~~--~------------ 159 (365)
T PRK13796 95 GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHG-IDELLEAIEKYR--E------------ 159 (365)
T ss_pred CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCC-HHHHHHHHHHhc--C------------
Confidence 3789999999999964321 11112 2678999999999 999988876653 1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcC------CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTF------KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..+++++|.+|||||||+|+++.... ..+..|.+. .....+.+.++ ..++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~~----~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDDG----SFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCCC----cEEEECCCc
Confidence 13699999999999999999985321 112223332 22334444233 369999994
No 112
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.51 E-value=4.4e-14 Score=98.45 Aligned_cols=61 Identities=43% Similarity=0.683 Sum_probs=54.1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+|++++|++|||||||+++|..+.+...+.+|++..+....... .+..+++.+|||+||+
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~gq~ 65 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP-YRRNIKLQLWDTAGQE 65 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEe-CCCEEEEEeecCCCHH
Confidence 389999999999999999999999999999999998887776655 5557899999999985
No 113
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.50 E-value=4e-14 Score=106.07 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=70.1
Q ss_pred CCcEEeeccCCCcccccc---ccccc------------CCCCccccccCCcccccccccccccccCCCcccCCCCCCcee
Q psy10878 6 KKPILLPSASEDPSIDNW---DKASW------------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKL 70 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~---~~~~~------------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (131)
++|+++|+||+|+..... ....| .+++++||+.+.| +.++++.+.++.. .
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~g-v~eL~~~l~~~~~--------------~ 154 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNG-IDELLDKIKKARN--------------K 154 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCC-HHHHHHHHHHHhC--------------C
Confidence 789999999999864321 11111 2578899999999 9998887755420 1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcC------CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTF------KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.+++++|.+|||||||+|+++.... ..+..|.++.+ ...+.+ ++. +.++||||-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~-~~~---~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPL-DDG---HSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEe-CCC---CEEEECCCC
Confidence 4799999999999999999986422 22222333322 233333 222 469999994
No 114
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.50 E-value=1e-13 Score=91.80 Aligned_cols=60 Identities=43% Similarity=0.758 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|.+|+|||||++++.++.+...+.++.+..+....+.+ .+..+.+.+|||+||+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQE 60 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEEEEECCchH
Confidence 58999999999999999999999887777778877777777776 6778899999999984
No 115
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.49 E-value=1.6e-13 Score=91.89 Aligned_cols=62 Identities=48% Similarity=0.836 Sum_probs=55.3
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+|++++|.+|||||||++++..+.+...+.+|++.++....+.+ ++..+.+.+|||+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQE 67 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 4689999999999999999999988887778889988888888888 8888999999999974
No 116
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.49 E-value=1.4e-13 Score=92.20 Aligned_cols=59 Identities=37% Similarity=0.667 Sum_probs=50.5
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||+++|.++.+...+.|+....+ ...+.. ++..+.+++|||+||+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~D~~g~~ 59 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTV-DGKQVNLGLWDTAGQE 59 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcc
Confidence 5899999999999999999999998777888877555 455566 7888999999999986
No 117
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.49 E-value=7.4e-14 Score=95.34 Aligned_cols=61 Identities=25% Similarity=0.446 Sum_probs=49.5
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|.+|||||||++++..+.+.. +.||.+.++....+.+.++..+.+++|||+|||
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 5799999999999999999999888874 468888666555554434567899999999985
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.49 E-value=1.4e-13 Score=90.33 Aligned_cols=60 Identities=50% Similarity=0.953 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|.+++|||||++++.+..+...+.+|.+.++....+.. ++..+.+.+||++|++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI-DGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE-CCEEEEEEEEecCChH
Confidence 48999999999999999999999988888899999888888877 7778899999999974
No 119
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.48 E-value=1.4e-13 Score=91.42 Aligned_cols=59 Identities=34% Similarity=0.606 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|.+|||||||+++++.+.+...+.++++..+ .+...+ ++..+.+.+|||+||+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEDVQLNILDTAGQE 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEE-CCEEEEEEEEECCChh
Confidence 4899999999999999999999999888888887665 455566 7888999999999984
No 120
>PRK00098 GTPase RsgA; Reviewed
Probab=99.47 E-value=1.6e-14 Score=105.77 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=53.9
Q ss_pred cCCCcEEeeccCCCcccccccc----c---cc-CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEE
Q psy10878 4 KAKKPILLPSASEDPSIDNWDK----A---SW-ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~----~---~~-~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v 75 (131)
..++|+++|+||+|+.+..... . .+ ..++++|+.++.| +.++++.+... .+++
T Consensus 109 ~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g-i~~L~~~l~gk------------------~~~~ 169 (298)
T PRK00098 109 ANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG-LDELKPLLAGK------------------VTVL 169 (298)
T ss_pred HCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc-HHHHHhhccCc------------------eEEE
Confidence 4679999999999996332111 1 11 4578999999999 88776654322 4899
Q ss_pred EcCCCCCchhhhhhhhhCc
Q psy10878 76 IGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~ 94 (131)
+|.+|||||||+|.+++..
T Consensus 170 ~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 170 AGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 9999999999999998643
No 121
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.45 E-value=4.6e-13 Score=87.42 Aligned_cols=60 Identities=32% Similarity=0.660 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|.+|+|||||++++....+...+.++++.++....+.+ ++..+.+.+|||+|++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcc
Confidence 68999999999999999999988888888889998887766777 7777889999999974
No 122
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.45 E-value=2.5e-13 Score=95.55 Aligned_cols=55 Identities=42% Similarity=0.742 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|+++||||||+++|+.++|.. +.||++.++....+ ..+.+.||||+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~-----~~~~l~iwDt~G~e 55 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW-----GPYNISIWDTAGRE 55 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe-----eEEEEEEEeCCCcc
Confidence 489999999999999999999999974 67899877654332 45789999999986
No 123
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.44 E-value=2e-14 Score=104.75 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=54.3
Q ss_pred cCCCcEEeeccCCCcccccccc------ccc-CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEE
Q psy10878 4 KAKKPILLPSASEDPSIDNWDK------ASW-ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVI 76 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~------~~~-~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vv 76 (131)
..++|+++|+||+|+.+..... ..+ ..++++|+.++.| +.++.+.+.. -.++++
T Consensus 107 ~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g-i~~L~~~L~~------------------k~~~~~ 167 (287)
T cd01854 107 AAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEG-LDELREYLKG------------------KTSVLV 167 (287)
T ss_pred HcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCcc-HHHHHhhhcc------------------ceEEEE
Confidence 4689999999999996542111 111 4678999999999 8776554332 259999
Q ss_pred cCCCCCchhhhhhhhhCcC
Q psy10878 77 GDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~~ 95 (131)
|.+|||||||+|.+++...
T Consensus 168 G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 168 GQSGVGKSTLINALLPDLD 186 (287)
T ss_pred CCCCCCHHHHHHHHhchhh
Confidence 9999999999999986543
No 124
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.43 E-value=3.7e-13 Score=91.16 Aligned_cols=59 Identities=34% Similarity=0.608 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.||+++|.+|||||||++++.++.+...+.||++..+ ...+.+ ++..+.+++|||+|++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRY-KGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEE-CCEEEEEEEEECCChH
Confidence 5899999999999999999999888877888887665 455666 7778889999999984
No 125
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.42 E-value=3.1e-13 Score=90.31 Aligned_cols=55 Identities=22% Similarity=0.570 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|.++||||||++++..+.+. .+.||++.++ ..+.+ ..+.+++|||+||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~---~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---KNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEE---CCEEEEEEECCCCH
Confidence 48999999999999999999888887 5789988665 23433 35789999999985
No 126
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.42 E-value=2.5e-13 Score=91.22 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=45.5
Q ss_pred EEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
++++|++|||||||+++|.++.+...+.||++.++ .. + ++..+.+++|||+||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i-~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--I-PTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--E-eeCCeEEEEEECCCCc
Confidence 78999999999999999999888888899998653 22 3 4456889999999985
No 127
>KOG0395|consensus
Probab=99.42 E-value=3.8e-13 Score=93.10 Aligned_cols=61 Identities=30% Similarity=0.535 Sum_probs=55.3
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+|++++|.+|||||+|..+|+++.|...|.||++..| .+.+.+ ++..+.++|+||+||+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v-~~~~~~l~ilDt~g~~ 62 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTV-DGEVCMLEILDTAGQE 62 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEE-CCEEEEEEEEcCCCcc
Confidence 357999999999999999999999999999999999555 677887 8999999999999975
No 128
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=6.1e-13 Score=89.20 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|++++|++|||||||+++|..+.|...+. +...++ .....+ ++..+.+++|||+|++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEI-TIPADV-TPERVPTTIVDTSSRP 58 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC-Ccccce-Eeeeee-cCCeEEEEEEeCCCch
Confidence 389999999999999999999999976643 333333 333444 6677999999999974
No 129
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.41 E-value=4.5e-13 Score=90.33 Aligned_cols=57 Identities=25% Similarity=0.534 Sum_probs=46.3
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|.+|||||||++++..+.+. .+.||++.++. .+.. ..+.+++|||+||+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~ 64 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY---KNVKFNVWDVGGQD 64 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE---CCEEEEEEECCCCH
Confidence 4589999999999999999999987775 46788887653 3333 45789999999985
No 130
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.40 E-value=6.5e-13 Score=91.72 Aligned_cols=58 Identities=28% Similarity=0.547 Sum_probs=49.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
||+++|++|||||||+++|+.+.+...+.+|+. ++....+.+ ++..+.++||||+|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEV-GGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEE-CCEEEEEEEEECCCch
Confidence 689999999999999999999999888888876 444566777 7778899999999974
No 131
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.40 E-value=6.4e-13 Score=90.11 Aligned_cols=57 Identities=23% Similarity=0.517 Sum_probs=46.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+|++++|++|||||||++++..+++. .+.||++.++. .+.+ ..+.+++|||+||+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~---~~~~l~l~D~~G~~ 68 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY---KNISFTVWDVGGQD 68 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE---CCEEEEEEECCCCh
Confidence 3589999999999999999999877775 57799987663 3333 34789999999985
No 132
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.40 E-value=7.9e-13 Score=87.32 Aligned_cols=58 Identities=34% Similarity=0.558 Sum_probs=49.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|++++|++++|||||++++.+..+...+.++.+ +.....+.+ ++..+.+++||++|++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEEEEECCChH
Confidence 689999999999999999998888888888887 444566666 7778999999999974
No 133
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.39 E-value=6.9e-13 Score=90.61 Aligned_cols=56 Identities=21% Similarity=0.539 Sum_probs=46.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|+++||||||++++..+.+.. +.||++.++. .+.. ..+.+++|||+||+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~---~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY---KNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE---CCEEEEEEECCCCH
Confidence 5799999999999999999998888864 6789886653 3433 45789999999985
No 134
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.39 E-value=8.8e-13 Score=90.04 Aligned_cols=57 Identities=23% Similarity=0.545 Sum_probs=46.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|+++||||||++++..+++. .+.||++.++. .+.+ ..+.+++|||+||+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~---~~~~~~i~D~~Gq~ 72 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQD 72 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE---CCEEEEEEECCCCH
Confidence 4579999999999999999999988886 57799986653 3433 45789999999985
No 135
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.38 E-value=1.9e-12 Score=88.57 Aligned_cols=59 Identities=32% Similarity=0.618 Sum_probs=50.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.|++++|++|+|||||++++..+.+...+.+|++..+. ..+.+ ++..+.+.+|||+||+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~g~~ 60 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRV-DGKPVQLALWDTAGQE 60 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEE-CCEEEEEEEEECCCCh
Confidence 48999999999999999999988888888888876664 45666 7788899999999985
No 136
>KOG4252|consensus
Probab=99.36 E-value=1.2e-14 Score=97.80 Aligned_cols=65 Identities=42% Similarity=0.760 Sum_probs=59.6
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+..+|++++|..+|||||++.||+.+-|...|.-|+|.+|....+.+ +++.+++.+|||+|||
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v-~~Edvr~mlWdtagqe 80 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKV-LIEDVRSMLWDTAGQE 80 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHh-hHHHHHHHHHHhccch
Confidence 3556799999999999999999999999999999999999998888877 7888889999999997
No 137
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.36 E-value=1.6e-12 Score=87.77 Aligned_cols=58 Identities=24% Similarity=0.641 Sum_probs=45.8
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+|++++|.+|||||||++++.+..+ ..+.||++. ....+.+ + .+.+++|||+||+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~-~--~~~l~l~D~~G~~ 69 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEY-E--GYKLNIWDVGGQK 69 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEE-C--CEEEEEEECCCCH
Confidence 3457999999999999999999997755 467788874 3445555 4 3678999999985
No 138
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.34 E-value=2.1e-12 Score=86.91 Aligned_cols=54 Identities=26% Similarity=0.618 Sum_probs=44.2
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|++++|.++||||||++++.++.+. .+.||++.++. .+.+ ..+.+++|||+||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~---~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY---KNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE---CCEEEEEEECCCCh
Confidence 5899999999999999999988776 47889886663 3433 45789999999985
No 139
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.32 E-value=2.6e-12 Score=85.24 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=43.1
Q ss_pred EEEEEcCCCCCchhhhhhhhhCc-CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNT-FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|+++|++|||||||++++.+.. +...+.||++..+ ..+.. ..+.+++|||||++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~---~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK---GNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE---CCEEEEEEECCCCH
Confidence 48999999999999999999875 4567788988543 23333 35778999999985
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.32 E-value=3.3e-12 Score=84.72 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC---cCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN---TFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++++|.+|||||||++++.+. .+..++.+++..+.....+.+ .+ ...+++||||||+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~-~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL-PS-GKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe-cC-CcEEEEEECCChH
Confidence 5899999999999999999853 344344444444444444555 31 3578999999985
No 141
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.31 E-value=3e-12 Score=92.89 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=53.7
Q ss_pred cCCCcEEeeccCCCcccccccc-cc-------c-CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEE
Q psy10878 4 KAKKPILLPSASEDPSIDNWDK-AS-------W-ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVI 74 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~-~~-------~-~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 74 (131)
..+..+++|+||+||.+++... .+ + ..++.+|++.+.+ +..+.+.+.... .+
T Consensus 108 ~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~-~~~l~~~l~~~~------------------sv 168 (301)
T COG1162 108 AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDG-LEELAELLAGKI------------------TV 168 (301)
T ss_pred HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCccc-HHHHHHHhcCCe------------------EE
Confidence 3577889999999997665333 11 1 6788899998888 777655444443 88
Q ss_pred EEcCCCCCchhhhhhhhh
Q psy10878 75 VIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 75 vvG~~~vGKSsli~~~~~ 92 (131)
++|.+|||||||+|++..
T Consensus 169 l~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 169 LLGQSGVGKSTLINALLP 186 (301)
T ss_pred EECCCCCcHHHHHHhhCc
Confidence 999999999999999985
No 142
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.29 E-value=7.3e-12 Score=82.18 Aligned_cols=54 Identities=30% Similarity=0.550 Sum_probs=45.6
Q ss_pred EEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
++++|.+|||||||++++.+.++...+.||++.++. .+.. ++ +.+.+|||+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~-~~--~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK-GN--VTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE-CC--EEEEEEECCCCH
Confidence 789999999999999999999999899999987664 3333 33 779999999974
No 143
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.28 E-value=7.3e-12 Score=84.26 Aligned_cols=54 Identities=22% Similarity=0.398 Sum_probs=43.8
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|+++|.++||||||++++.++ +...+.||++.. ...+.+ ..+.+++|||+|++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~---~~~~~~i~D~~G~~ 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL---DKYEVCIFDLGGGA 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE---CCEEEEEEECCCcH
Confidence 4799999999999999999865 777888999854 345554 34779999999974
No 144
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.28 E-value=1.1e-11 Score=82.86 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+++++|.+|+|||||++++.+..+.....+....+.....+.+ ..+.++||||||+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~Dt~G~ 57 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY---KYLRWQVIDTPGL 57 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc---CceEEEEEECCCc
Confidence 6899999999999999999987764332222112222222322 3467999999997
No 145
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.28 E-value=8.9e-12 Score=84.31 Aligned_cols=56 Identities=27% Similarity=0.598 Sum_probs=45.7
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|.+++|||||++++..+.+.. +.||++.++. .+.+ + .+.+.+|||+|++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~-~--~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY-K--NIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE-C--CeEEEEEECCCCH
Confidence 4799999999999999999999888874 6788886653 3444 3 4779999999985
No 146
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.26 E-value=1.3e-11 Score=78.28 Aligned_cols=59 Identities=32% Similarity=0.621 Sum_probs=41.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC--CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK--KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
||+|+|.+|||||||+++|+++.+. ..+.++.+..+....... .+....+++||++|++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~ 61 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQE 61 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCccc
Confidence 7999999999999999999988776 222333344444444454 6676779999999974
No 147
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.26 E-value=8.6e-12 Score=82.86 Aligned_cols=54 Identities=26% Similarity=0.587 Sum_probs=42.8
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|++++|+++||||||++++..+.+. .+.||++.++. .+.+ ..+.+++|||+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY---KNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE---CCEEEEEEECCCCH
Confidence 5899999999999999999877775 45688876543 3433 45789999999984
No 148
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.26 E-value=1.1e-11 Score=82.27 Aligned_cols=55 Identities=22% Similarity=0.575 Sum_probs=43.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+++++|.+|||||||+++|.++.+.. +.||.+.++ ..+.. + ..+.+.+|||+||+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~-~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-E-KHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-C-CceEEEEEECCCCH
Confidence 58999999999999999999888864 468887554 33433 3 45789999999984
No 149
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.25 E-value=3.8e-11 Score=87.14 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=48.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCC----------ccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKD----------YKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
..++++++|.+|+|||||+|++++..+... +.+|+..+.....+.. +|..+.+.+|||||
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpG 72 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPG 72 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCC
Confidence 468999999999999999999998766433 3556666665666665 78889999999999
No 150
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.23 E-value=1.8e-11 Score=81.75 Aligned_cols=55 Identities=25% Similarity=0.543 Sum_probs=41.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhCc------CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNT------FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|+++|.+|||||||++++.... +...+.||++.++. .+.+ + ...+++|||+||+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~-~--~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV-G--NARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE-C--CEEEEEEECCCCh
Confidence 58999999999999999987532 23456678776663 4444 4 3678999999985
No 151
>KOG0096|consensus
Probab=99.23 E-value=3.3e-11 Score=81.84 Aligned_cols=63 Identities=35% Similarity=0.698 Sum_probs=54.5
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+|++++|+.|.|||++.+|.+.++|...|.+|+|.+.....+.- +...+++..|||+|||
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t-n~g~irf~~wdtagqE 70 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT-NRGQIRFNVWDTAGQE 70 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec-ccCcEEEEeeecccce
Confidence 45789999999999999999999999999999999998876555543 3336999999999997
No 152
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.23 E-value=1.1e-11 Score=85.26 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=42.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh--CcCCCCc------------cCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ--NTFKKDY------------KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+++++|.++||||||+++|+. +.|...+ .++.+.++..+...+ +...+.+++|||||++
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV-TYKDTKINIVDTPGHA 76 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE-EECCEEEEEEECCCcH
Confidence 799999999999999999996 5554433 233454454444444 4456789999999985
No 153
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.23 E-value=1.8e-11 Score=81.05 Aligned_cols=54 Identities=20% Similarity=0.550 Sum_probs=42.8
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|++++|.+|||||||+++++++.+. .+.+|++..+ ..+.+ + .+.+.+|||+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~-~--~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEY-K--NVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEE-C--CEEEEEEECCCCh
Confidence 6899999999999999999987743 5677887554 34444 3 4679999999985
No 154
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.21 E-value=2.9e-11 Score=82.65 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=44.4
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...++++++|.+|||||||++++.++.+. .+.||.+... ..+.+ + .+.+.+|||+|++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~-~--~~~~~~~D~~G~~ 72 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI-G--NIKFTTFDLGGHQ 72 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE-C--CEEEEEEECCCCH
Confidence 34589999999999999999999987775 4567766432 33444 3 3678999999984
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.20 E-value=4.3e-11 Score=82.51 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=41.8
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
...++|+++|.+|||||||++++.+..+...+.|+++ +....+.+ + .+.+|||||
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~-~----~~~l~Dt~G 61 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDW-G----DFILTDLPG 61 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEee-c----ceEEEeCCc
Confidence 3467999999999999999999998877665656554 33334433 2 489999999
No 156
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.20 E-value=4.1e-11 Score=79.90 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=43.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecC-CeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRD-QQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~l~i~Dt~Gqe 131 (131)
.++++|.+|+|||||++++..+++...+.+++..++....+.. + +....+.+|||+|++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPA-EVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEec-ccCCcceEEEEeCCCcH
Confidence 4899999999999999999988877655455544444344433 2 235678999999984
No 157
>PRK01889 GTPase RsgA; Reviewed
Probab=99.19 E-value=8.6e-12 Score=93.45 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=54.5
Q ss_pred ccCCCcEEeeccCCCcccccc-ccccc------CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEE
Q psy10878 3 YKAKKPILLPSASEDPSIDNW-DKASW------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~-~~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v 75 (131)
...+.|+++|+||+||.+... ....+ .+++++|+.++.| +.+|...+.. .-++++
T Consensus 139 ~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~g-l~~L~~~L~~-----------------g~~~~l 200 (356)
T PRK01889 139 WESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEG-LDVLAAWLSG-----------------GKTVAL 200 (356)
T ss_pred HHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCcc-HHHHHHHhhc-----------------CCEEEE
Confidence 346889999999999975421 11111 5778999999999 8776554321 126999
Q ss_pred EcCCCCCchhhhhhhhhC
Q psy10878 76 IGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~ 93 (131)
+|.+|+|||||+|.+++.
T Consensus 201 vG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 201 LGSSGVGKSTLVNALLGE 218 (356)
T ss_pred ECCCCccHHHHHHHHHHh
Confidence 999999999999998864
No 158
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.19 E-value=2.6e-11 Score=79.99 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=42.0
Q ss_pred EEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 75 VIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 75 vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
++|.+|||||||++++.+..+...+.++++.+.....+.+ ++ ..+.+|||||++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~liDtpG~~ 54 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-GG--KEIEIVDLPGTY 54 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-CC--eEEEEEECCCcc
Confidence 5899999999999999987655555566666665666776 55 468999999974
No 159
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.19 E-value=5.4e-11 Score=81.26 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=45.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.+|++++|++|||||||++++.++.+. .+.||.+... ..+.+ ++ +.+++|||+|++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~-~~--~~~~l~D~~G~~ 74 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTI-GN--IKFKTFDLGGHE 74 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEE-CC--EEEEEEECCCCH
Confidence 4679999999999999999999987774 5778877543 44555 44 568999999984
No 160
>KOG1673|consensus
Probab=99.19 E-value=3.1e-11 Score=79.71 Aligned_cols=65 Identities=37% Similarity=0.681 Sum_probs=60.3
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...-.+|+-++|++.+|||||+..|.++++.+++..+.|.++..+++.+ .|..+.+.|||..|||
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSIwdlgG~~ 80 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSIWDLGGQR 80 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEEEecCCcH
Confidence 3556889999999999999999999999998899999999999999998 8999999999999996
No 161
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.18 E-value=7.5e-11 Score=80.14 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=44.2
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+....+++++|.+|+|||||+|++.+..+...+.++.+.......+.+ ++ .+.+|||||.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~liDtpG~ 74 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV-ND---GFRLVDLPGY 74 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe-CC---cEEEEeCCCC
Confidence 345679999999999999999999987655555566654443333444 33 4889999994
No 162
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.18 E-value=6.4e-11 Score=81.12 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=45.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.....+++++|.+|+|||||+++++++++...+.++.+.........+ ...+.||||||.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~ 80 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGY 80 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCC
Confidence 345678999999999999999999987766666677665443333322 256899999994
No 163
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.15 E-value=1.5e-10 Score=89.02 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=46.0
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcC--CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTF--KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...+|++++|.+|||||||+|++++..+ ...+ |+++.++....+.+ +|. .+.+|||||+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~-~g~--~v~l~DTaG~ 261 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFEL-NGI--LIKLLDTAGI 261 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEE-CCE--EEEEeeCCCc
Confidence 3457999999999999999999997643 3333 55666777777777 664 4689999997
No 164
>KOG0073|consensus
Probab=99.13 E-value=1.6e-10 Score=76.88 Aligned_cols=58 Identities=26% Similarity=0.637 Sum_probs=48.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.+++++|+++|..|+|||+++++|.+.. .....||.| |..+++.+ +.+.+++||..||
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~---~~~~L~iwDvGGq 70 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEY---KGYTLNIWDVGGQ 70 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEe---cceEEEEEEcCCc
Confidence 3458999999999999999999998655 556779998 66777777 5588999999998
No 165
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.13 E-value=1.2e-10 Score=78.64 Aligned_cols=60 Identities=23% Similarity=0.421 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCchhhhhhhhhCc-------CCCCccCCc------eeEeEEEEE--Eec--CCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNT-------FKKDYKGTV------GVDFALKIV--KWR--DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~-------~~~~~~~t~------~~~~~~~~~--~~~--~~~~~~l~i~Dt~Gqe 131 (131)
+++++|.++||||||+++|++.. +...+.++. |.++..+.+ .+. ++..+.+++|||||++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh
Confidence 58999999999999999998632 222333332 333433222 221 4567889999999985
No 166
>KOG0070|consensus
Probab=99.12 E-value=1e-10 Score=78.97 Aligned_cols=59 Identities=24% Similarity=0.572 Sum_probs=50.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+++|+++|..++||||+++++-.+++... .||+| |....+.+ +.+++++||..||+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~y---kn~~f~vWDvGGq~ 72 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEY---KNISFTVWDVGGQE 72 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEE---cceEEEEEecCCCc
Confidence 45678999999999999999999998877654 79999 55677777 46889999999996
No 167
>PRK15494 era GTPase Era; Provisional
Probab=99.11 E-value=1e-10 Score=87.22 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=41.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCC-CccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKK-DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.+.++++++|.+|||||||+|+|++..+.. +..+.+..++....+.+ ++ ..+.+|||||+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~--~qi~~~DTpG~ 110 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KD--TQVILYDTPGI 110 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CC--eEEEEEECCCc
Confidence 456799999999999999999999877642 11121222333444555 44 35799999997
No 168
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.11 E-value=1.7e-10 Score=77.05 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=42.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
++|+++|.||||||||+|++.+.+......|.+..+.....+.+ ++ ..+.++|+||.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~-~~--~~~~lvDlPG~ 57 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL-GD--QQVELVDLPGI 57 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE-TT--EEEEEEE----
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe-cC--ceEEEEECCCc
Confidence 57999999999999999999987765555577777777777777 55 45789999994
No 169
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.11 E-value=2.7e-10 Score=76.50 Aligned_cols=56 Identities=29% Similarity=0.554 Sum_probs=43.9
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++++++|.+|+|||||++++.+..+. .+.||.+.++ ..+.+ ++ ..+.+|||+|++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~-~~--~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQS-DG--FKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEE-CC--EEEEEEECCCCH
Confidence 689999999999999999999987664 4667777443 34444 44 568999999973
No 170
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.10 E-value=1.7e-10 Score=79.75 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=41.2
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...++|+++|.+|||||||++++.+..+.....+....+.....+.+ ++. ..+.+|||+|+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~-~~~~i~Dt~G~ 99 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL-PDG-REVLLTDTVGF 99 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe-cCC-ceEEEeCCCcc
Confidence 34579999999999999999999987643222222222333344444 332 36889999996
No 171
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.09 E-value=2.3e-10 Score=85.66 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=43.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..++|+++|.+|||||||+|++.+..+.....+....++....+.+.++ ..+.||||+|+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~--~~i~l~DT~G~ 247 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG--GEVLLTDTVGF 247 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC--ceEEEEecCcc
Confidence 4579999999999999999999987654333333334555666666334 36789999996
No 172
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.08 E-value=2.6e-10 Score=79.26 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+++++|++++|||+|+++|..+.+...+.++ ...+....+.. .+....+.||||||++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~-~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNS-EGKGKKFRLVDVPGHP 59 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeec-CCCCceEEEEECCCCH
Confidence 5899999999999999999988886655333 32332212211 2345679999999985
No 173
>KOG1424|consensus
Probab=99.07 E-value=1.5e-10 Score=88.69 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=42.4
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
.+.|-+||.|||||||.||.+++.+.. +.+.|.|..-.-+++.+..+ +.|.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~~----v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSPS----VCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCCC----ceecCCCC
Confidence 688999999999999999999976654 45567776555556655233 68999998
No 174
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.07 E-value=1.1e-10 Score=76.09 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
||+++|++|||||||+++|.++.+ .+.+|.+.++ .+ .+|||||+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~--------~~-----~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY--------ND-----GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE--------cC-----eeecCchh
Confidence 799999999999999999997765 3445554333 22 58999997
No 175
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.06 E-value=3e-10 Score=75.92 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.|+++|.+|||||||++++.+........+....+.....+.+ ++ ...+.+|||||+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~-~~-~~~~~l~DtpG~ 58 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-DD-GRSFVVADIPGL 58 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc-CC-CCeEEEEecCcc
Confidence 4899999999999999999865542111111111222222333 33 246899999996
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.05 E-value=4.1e-10 Score=86.22 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=43.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+|+++|.+|||||||+|++.+.+.. ....+.++.+.....+.+ ++ ..+.+|||||++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~--~~~~liDT~G~~ 60 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LG--REFILIDTGGIE 60 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CC--cEEEEEECCCCC
Confidence 47999999999999999999976542 222344444555556666 55 678999999985
No 177
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.05 E-value=5.8e-10 Score=73.18 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
++++++|++|+|||||++++.+..+. ....+++..++....+.+ ++ ..+.+|||+|.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~DtpG~ 59 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GG--IPVRLIDTAGI 59 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CC--EEEEEEECCCc
Confidence 58999999999999999999976542 122344444554455554 43 56899999996
No 178
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.05 E-value=2.3e-10 Score=78.53 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhC----cCCC---CccCCceeEeEEEEEEec-----------CCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQN----TFKK---DYKGTVGVDFALKIVKWR-----------DQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~----~~~~---~~~~t~~~~~~~~~~~~~-----------~~~~~~l~i~Dt~Gq 130 (131)
++++++|.+++|||||+++|+.. .+.. +..+++..+.....+.+. ++..+.+.+|||||+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 78 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH 78 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc
Confidence 47999999999999999999862 1211 112222222222223331 233578999999997
No 179
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.05 E-value=5.8e-10 Score=86.42 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=43.5
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+|+++|.+|||||||+|++++..+ .....|+++.+.....+.+ ++. .+.+|||+|++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~--~~~l~DT~G~~ 97 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGR--RFTVVDTGGWE 97 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCc--EEEEEeCCCcC
Confidence 5899999999999999999997654 2344455555555555666 554 47899999975
No 180
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.03 E-value=5.3e-10 Score=86.18 Aligned_cols=60 Identities=25% Similarity=0.311 Sum_probs=45.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..++++++|.+|+|||||+|++++... .....+.+..++....+.+ +|. .+.+|||||++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~--~i~l~DT~G~~ 274 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL-DGI--PLRLIDTAGIR 274 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE-CCe--EEEEEeCCCCC
Confidence 357999999999999999999997654 2233455555666677777 664 57899999974
No 181
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.03 E-value=2.6e-10 Score=77.50 Aligned_cols=58 Identities=26% Similarity=0.588 Sum_probs=46.8
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|..++||||+++++..+.+. .+.||.|.+ ...+.+ ++ +.+++||.+||+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~-~~--~~~~~~d~gG~~ 69 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKY-KG--YSLTIWDLGGQE 69 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEE-TT--EEEEEEEESSSG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeee-Cc--EEEEEEeccccc
Confidence 56789999999999999999999876655 477888854 456666 44 568999999984
No 182
>KOG2484|consensus
Probab=99.02 E-value=2.3e-10 Score=85.39 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=68.7
Q ss_pred CCCcEEeeccCCCccccccccccc--------CCCCccccccCCcccccccc--------cccccccCCCcccCCCCCCc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW--------ENVTPIVSEQGDGEIIEIID--------PSLKLVRVPSIRKSFNAPPE 68 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~--------~~~~~is~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 68 (131)
.+|..|||+||+|++..+ ...+| -.+.+.++....+.-...+. .+.+.+ .++.+ .+.-.
T Consensus 176 gnKkLILVLNK~DLVPrE-v~e~Wl~YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~l--gny~~--~~~lk 250 (435)
T KOG2484|consen 176 GNKKLILVLNKIDLVPRE-VVEKWLVYLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVL--GNYCR--KGELK 250 (435)
T ss_pred CCceEEEEeehhccCCHH-HHHHHHHHHHhhCCcceeecccccccccccccccchhhhHHHHHHHh--cCccc--ccccC
Confidence 459999999999998765 34444 22333333333331111111 112222 22222 22235
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
..+.+-|+|-|||||||+||++...+.- ..-++.|.+...+.+.+ +.. +.|.|.||
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C-~vg~~pGvT~smqeV~L-dk~---i~llDsPg 306 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKAC-NVGNVPGVTRSMQEVKL-DKK---IRLLDSPG 306 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccc-cCCCCccchhhhhheec-cCC---ceeccCCc
Confidence 6789999999999999999999866552 22244455555666666 433 68999988
No 183
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.98 E-value=1.4e-09 Score=72.30 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=39.8
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.++|+++|.+|+|||||++++.+..+. ....++...+.....+.. ++.. +.+|||+|+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~iiDtpG~ 60 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKK--YTLIDTAGI 60 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCee--EEEEECCCC
Confidence 468999999999999999999876532 222233333333444555 5543 679999995
No 184
>KOG4423|consensus
Probab=98.96 E-value=1.6e-12 Score=88.00 Aligned_cols=65 Identities=58% Similarity=1.059 Sum_probs=59.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+|++|+|+.++|||+++.||+...|...|-.|+|.+|..+.+.+++...++++|||.+|||
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe 86 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE 86 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh
Confidence 35678999999999999999999999999889999999999999999966667899999999997
No 185
>KOG0071|consensus
Probab=98.95 E-value=2.2e-09 Score=69.93 Aligned_cols=58 Identities=26% Similarity=0.572 Sum_probs=47.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++++++++|..++||||++..+.-+... ...||+| |..+++.+ +.+++++||..||+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVty---kN~kfNvwdvGGqd 72 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY---KNVKFNVWDVGGQD 72 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEe---eeeEEeeeeccCch
Confidence 34789999999999999999998855443 4568888 66778877 67889999999996
No 186
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.95 E-value=2.5e-09 Score=67.66 Aligned_cols=55 Identities=25% Similarity=0.480 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcC--CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTF--KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+|+++|.+|+|||||+|++++... .....+++. ......+.+ ++.. +.++||||-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~-~~~~~~~~~-~~~~--~~~vDtpG~ 57 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTR-DPVYGQFEY-NNKK--FILVDTPGI 57 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSS-SEEEEEEEE-TTEE--EEEEESSSC
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccccccee-eeeeeeeee-ceee--EEEEeCCCC
Confidence 589999999999999999997532 222222222 223344555 5554 469999994
No 187
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.95 E-value=1.4e-09 Score=69.89 Aligned_cols=55 Identities=45% Similarity=0.842 Sum_probs=43.0
Q ss_pred EEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 75 VIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 75 vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
++|.+|+|||||++++.+... ...+.+|. .++....... .+....+.+|||+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~l~D~~g~~ 56 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEV-DGKKVKLQIWDTAGQE 56 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEE-CCEEEEEEEEecCChH
Confidence 589999999999999997766 45555666 6666666655 5667889999999963
No 188
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.95 E-value=1.8e-09 Score=78.08 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCC--CccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKK--DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+++++|.+|||||||+|++++..+.. ....|+. +. ...+...++ ..+.+|||||+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~-i~~i~~~~~--~qii~vDTPG~ 58 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NR-ISGIHTTGA--SQIIFIDTPGF 58 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-Cc-EEEEEEcCC--cEEEEEECcCC
Confidence 68999999999999999999876531 2223333 22 223322132 45889999996
No 189
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.94 E-value=1.5e-09 Score=71.68 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=40.9
Q ss_pred EEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
++++|.+|+|||||++.+.++.+.....++.+.......+.. ++ .+.+|||+|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~~~D~~g 54 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-ND---KFRLVDLPG 54 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-cC---eEEEecCCC
Confidence 789999999999999999976666666677665554444444 33 689999998
No 190
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.94 E-value=2.3e-09 Score=70.58 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=37.5
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCc-cCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDY-KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..+|+++|.+|+|||||++++++....... .+...... ..... ....+.+.+|||+|.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~liDtpG~ 61 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-IRGIY--TDDDAQIIFVDTPGI 61 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-EEEEE--EcCCeEEEEEECCCC
Confidence 568999999999999999999876543211 11111111 12221 223467889999996
No 191
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.94 E-value=2.3e-09 Score=81.60 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=49.0
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
-...+|++++|.||||||||+|.+++.+. .....|.+..|+....+.+ +|. .+.|.||||.
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~--pv~l~DTAGi 275 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGI--PVRLVDTAGI 275 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCE--EEEEEecCCc
Confidence 44678999999999999999999996544 4455577777887888888 775 4789999994
No 192
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.92 E-value=2.4e-09 Score=81.78 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=40.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+|+++|.+|||||||+|++.+.+.. ....|++..+.....+.+ ++. .+.+|||||.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~--~~~liDTpG~ 57 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGR--EFILIDTGGI 57 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCe--EEEEEECCCC
Confidence 4899999999999999999976542 222344444555556666 554 4899999995
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.92 E-value=3.1e-09 Score=75.41 Aligned_cols=55 Identities=24% Similarity=0.483 Sum_probs=37.9
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+++++|.+|+|||||++++.+.... ..+..+ ..+.....+.+ ++ ..+++|||||+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~t-T~~~~~g~~~~-~~--~~i~l~DtpG~ 57 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFT-TLTCVPGVLEY-KG--AKIQLLDLPGI 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCc-cccceEEEEEE-CC--eEEEEEECCCc
Confidence 6899999999999999999975432 223222 22333344555 44 46899999997
No 194
>KOG2485|consensus
Probab=98.90 E-value=9.2e-10 Score=80.04 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCcEEeeccCCCccccccc---cccc-----CCCCcccccc--CCcccccccccccccccCCCcccCCCCCCceeeEEEE
Q psy10878 6 KKPILLPSASEDPSIDNWD---KASW-----ENVTPIVSEQ--GDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~---~~~~-----~~~~~is~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v 75 (131)
.||.++|+||+||.+.... ...+ ..++..+... ..+ +.+++..+.... ....++.......+.++|
T Consensus 73 ~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~-v~~l~~il~~~~---~~l~r~irt~~~~~~vmV 148 (335)
T KOG2485|consen 73 PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQ-VSPLLKILTILS---EELVRFIRTLNSEYNVMV 148 (335)
T ss_pred CCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhc-cccHHHHHHHHH---HHHHHhhcccCCceeEEE
Confidence 6899999999999873211 1222 3333333322 112 333322211110 111112233556789999
Q ss_pred EcCCCCCchhhhhhhhhCcC------CCCccCCceeEeEEEE-EEecCCeEEEEEEEeCCCC
Q psy10878 76 IGDPTVGKTSFVQRYVQNTF------KKDYKGTVGVDFALKI-VKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~~------~~~~~~t~~~~~~~~~-~~~~~~~~~~l~i~Dt~Gq 130 (131)
+|.||||||||+|....... .....|.+... +.. +.+.+... +.+.||+|-
T Consensus 149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~--V~~~iri~~rp~--vy~iDTPGi 206 (335)
T KOG2485|consen 149 VGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRR--VSERIRISHRPP--VYLIDTPGI 206 (335)
T ss_pred EcCCCCChHHHHHHHHHHHhhhccceeccCCCCceee--ehhheEeccCCc--eEEecCCCc
Confidence 99999999999997664221 11222333322 222 34423322 689999993
No 195
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.90 E-value=3e-09 Score=69.85 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=37.1
Q ss_pred EEEcCCCCCchhhhhhhhhCc--CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 74 IVIGDPTVGKTSFVQRYVQNT--FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 74 ~vvG~~~vGKSsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+++|.+|+|||||++++++.. +...+ +.+..+.......+ ++ ..+.+|||||++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~-~~--~~~~i~DtpG~~ 56 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEW-GG--REFILIDTGGIE 56 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEE-CC--eEEEEEECCCCC
Confidence 479999999999999999764 23333 33333344445544 44 568999999974
No 196
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.89 E-value=4.6e-09 Score=83.29 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=47.1
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+..+++++|..++|||||++++.+.++...+.+++..++....+.+.++. .+.||||||++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~--~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK--MITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc--EEEEEECCCCc
Confidence 345689999999999999999999888876665666555555556552232 68999999986
No 197
>PRK11058 GTPase HflX; Provisional
Probab=98.89 E-value=2.8e-09 Score=81.66 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=41.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.+++++|.+|||||||+|++.+..+.....+..+.+.....+.+ .+. ..+.+|||+|+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l-~~~-~~~~l~DTaG~ 255 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV-ADV-GETVLADTVGF 255 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe-CCC-CeEEEEecCcc
Confidence 48999999999999999999976654333344444555556655 332 14679999996
No 198
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.88 E-value=2.1e-09 Score=74.34 Aligned_cols=60 Identities=22% Similarity=0.454 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCcee-EeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGV-DFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+||+++|.+|+|||||+|.+++..+.....++++. ........+.......+.+|||+|+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~ 62 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGI 62 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCC
Confidence 68999999999999999999976554333333331 1111111111111235899999996
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.87 E-value=6.3e-09 Score=84.28 Aligned_cols=62 Identities=24% Similarity=0.363 Sum_probs=43.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+....+|+++|.+|||||||+|++++..+. ....|++..+.......+ ++ ..+.+|||+|++
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~--~~~~liDT~G~~ 334 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AG--TDFKLVDTGGWE 334 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CC--EEEEEEeCCCcC
Confidence 344568999999999999999999976542 233355554554444455 44 457899999974
No 200
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.86 E-value=2e-09 Score=72.17 Aligned_cols=52 Identities=25% Similarity=0.400 Sum_probs=34.2
Q ss_pred EEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecC-CeEEEEEEEeCCCC
Q psy10878 75 VIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRD-QQKIKLQLWDIAGQ 130 (131)
Q Consensus 75 vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~-~~~~~l~i~Dt~Gq 130 (131)
++|.+|||||||++++.+..+ ...+..+ ..+.....+.+ + + ..+.+|||||+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~-t~~~~~~~~~~-~~~--~~~~i~DtpG~ 54 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFT-TLEPNLGVVEV-PDG--ARIQVADIPGL 54 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCce-eecCcceEEEc-CCC--CeEEEEecccc
Confidence 589999999999999998764 2233222 22222333444 3 4 45799999996
No 201
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.84 E-value=7.9e-09 Score=74.06 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=39.6
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCC--CccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKK--DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++|+++|.+|||||||+|++++..... .+.++.. ........+ ++ ..+.+|||||-
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~-~~~~~~~~~-~g--~~i~vIDTPGl 89 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETL-RVREVSGTV-DG--FKLNIIDTPGL 89 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceE-EEEEEEEEE-CC--eEEEEEECCCc
Confidence 4557899999999999999999999765422 2222221 221222233 44 46899999994
No 202
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.83 E-value=1.1e-08 Score=83.35 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=41.9
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++|+++|.+|||||||+|++.+.+......|.+..+.....+.+ ....+++|||||+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~---~~~~i~lvDtPG~y 61 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST---TDHQVTLVDLPGTY 61 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc---CceEEEEEECCCcc
Confidence 468999999999999999999876553333344444443334433 44668999999973
No 203
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.82 E-value=6.5e-09 Score=70.29 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccC----------------CceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKG----------------TVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|+++|.+|+|||||++++++..+...+.+ ++..+.....+.+ ....+.+|||||++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW---PDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee---CCEEEEEEeCCCcH
Confidence 489999999999999999998766543322 1122222233333 24678999999973
No 204
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.82 E-value=1.1e-08 Score=75.00 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=39.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCC--CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFK--KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++|+++|.+||||||++|++++.+.. ..+.+ .+.........+ +| ..+.+|||||.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s-~t~~~~~~~~~~-~G--~~l~VIDTPGL 96 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS-EGLRPMMVSRTR-AG--FTLNIIDTPGL 96 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeEEEEEEEE-CC--eEEEEEECCCC
Confidence 345789999999999999999999976532 12212 121111112223 44 56899999995
No 205
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.80 E-value=1.1e-08 Score=81.27 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=41.9
Q ss_pred cCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 77 GDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|.+|||||||+|++.+..+...+.|+++.+.....+.+ ++. .+++|||||++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~~--~i~lvDtPG~~ 52 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-QGE--DIEIVDLPGIY 52 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CCe--EEEEEECCCcc
Confidence 89999999999999987775556677777776667776 554 47899999985
No 206
>PRK00089 era GTPase Era; Reviewed
Probab=98.79 E-value=1.8e-08 Score=73.43 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=37.9
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCC-CccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKK-DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+.-.|+++|.+|+|||||+|++++..... +..+.+.... ...+.. .+ ...+.+|||||.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~-i~~i~~-~~-~~qi~~iDTPG~ 63 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR-IRGIVT-ED-DAQIIFVDTPGI 63 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc-EEEEEE-cC-CceEEEEECCCC
Confidence 34579999999999999999999776532 2222222122 222221 22 267899999995
No 207
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.79 E-value=2.9e-08 Score=72.31 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=40.1
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCc----------cCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDY----------KGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
..++++|+|.+|+|||||+|.+++....... ..+.........+.- ++..+.|.++||+|
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE-NGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE-TCEEEEEEEEEEC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc-CCcceEEEEEeCCC
Confidence 3689999999999999999999875443221 123333333333443 77889999999998
No 208
>KOG2423|consensus
Probab=98.78 E-value=1.1e-09 Score=82.03 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=68.0
Q ss_pred CCCcEEeeccCCCccccccccccc----CCCCc-----cccccCCcccccccccccccccCCCcccCCCCCCceeeEEEE
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW----ENVTP-----IVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~----~~~~~-----is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v 75 (131)
..|..++|+||+||+.-. ..+.| ..-+| .|-.+..| -+.++..+.++..+. .....+.+-+
T Consensus 243 phKHli~vLNKvDLVPtw-vt~~Wv~~lSkeyPTiAfHAsi~nsfG-KgalI~llRQf~kLh--------~dkkqISVGf 312 (572)
T KOG2423|consen 243 PHKHLIYVLNKVDLVPTW-VTAKWVRHLSKEYPTIAFHASINNSFG-KGALIQLLRQFAKLH--------SDKKQISVGF 312 (572)
T ss_pred CcceeEEEeeccccccHH-HHHHHHHHHhhhCcceeeehhhcCccc-hhHHHHHHHHHHhhc--------cCccceeeee
Confidence 457789999999998654 33333 22222 23333345 556665555444332 2445788999
Q ss_pred EcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 76 IGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
||.||+||||+||.+...... ...|-.|..-..+.+.+ - -++-+.|+||
T Consensus 313 iGYPNvGKSSiINTLR~KkVC-kvAPIpGETKVWQYItL-m---krIfLIDcPG 361 (572)
T KOG2423|consen 313 IGYPNVGKSSIINTLRKKKVC-KVAPIPGETKVWQYITL-M---KRIFLIDCPG 361 (572)
T ss_pred ecCCCCchHHHHHHHhhcccc-cccCCCCcchHHHHHHH-H---hceeEecCCC
Confidence 999999999999999876664 34455554332222222 1 2256889888
No 209
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.77 E-value=4.1e-09 Score=70.70 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=36.9
Q ss_pred CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 29 ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 29 ~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.+++.+|+.++.+ +.++.+.+... .++++|.+|||||||+|.+...
T Consensus 13 y~v~~~S~~~~~g-~~~l~~~l~~k------------------~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 13 YPVFFISAKTGEG-IEELKELLKGK------------------TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEE-BTTTTTT-HHHHHHHHTTS------------------EEEEECSTTSSHHHHHHHHHTS
T ss_pred CcEEEEeCCCCcC-HHHHHHHhcCC------------------EEEEECCCCCCHHHHHHHHHhh
Confidence 5678999999999 87775554443 3899999999999999999865
No 210
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.77 E-value=1.5e-08 Score=80.37 Aligned_cols=58 Identities=16% Similarity=0.350 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhh---CcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ---NTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.|+++|..++|||||++++.+ +.+.+++.++++.++....+.+ ++ ..+.+|||||+|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~--~~v~~iDtPGhe 61 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PD--YRLGFIDVPGHE 61 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CC--EEEEEEECCCHH
Confidence 3689999999999999999985 4455566677777776666766 44 678999999975
No 211
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.76 E-value=1.9e-08 Score=79.95 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=41.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCc-------CCCCccCC------ceeEeEEEE--EEec--CCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNT-------FKKDYKGT------VGVDFALKI--VKWR--DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~-------~~~~~~~t------~~~~~~~~~--~~~~--~~~~~~l~i~Dt~Gqe 131 (131)
-+++++|..++|||||+++|+... +...+..+ .|.++..+. +.+. ++..+.++||||||++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 379999999999999999998541 22223222 244443333 2231 4667899999999984
No 212
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.74 E-value=2.2e-08 Score=74.12 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=38.9
Q ss_pred EEEEcCCCCCchhhhhhhhhCcCC------CCccCCceeEeEEEE---------------EEecCC-eEEEEEEEeCCCC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQNTFK------KDYKGTVGVDFALKI---------------VKWRDQ-QKIKLQLWDIAGQ 130 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~~-~~~~l~i~Dt~Gq 130 (131)
+.++|.||||||||+|++.+..+. ..+.|++|..+.... ..+ ++ ..+.+++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCI-DGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccc-cCcCcceEEEEECCCC
Confidence 478999999999999999977643 233466665443210 112 33 3467999999997
No 213
>KOG0074|consensus
Probab=98.73 E-value=4.1e-08 Score=64.19 Aligned_cols=59 Identities=29% Similarity=0.622 Sum_probs=47.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+++.++|-.++|||+|+.++.... +....||-| |..+.+.+ +| .+.|++||..||.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~-~g-~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEY-DG-TFHLNVWDIGGQR 73 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEee-cC-cEEEEEEecCCcc
Confidence 468999999999999999999987544 335567877 66788877 54 5889999999983
No 214
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.72 E-value=4.1e-08 Score=80.03 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=46.3
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+...|+++|..++|||||++++....+.....+++..+.....+.+ ++ ..++||||||++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~--~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NG--GKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE-CC--EEEEEEECCCCc
Confidence 445668999999999999999999887776554454444444445555 44 468899999985
No 215
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.71 E-value=3.7e-08 Score=73.25 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..|+++|.+|||||||++++...+.. ..|.-| ........+.+ ++ ...+.||||||+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fT-T~~p~ig~v~~-~~-~~~~~i~D~PGl 215 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT-TLVPNLGVVRV-DD-GRSFVIADIPGL 215 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCC-ccCCEEEEEEe-CC-ceEEEEEeCCCc
Confidence 46899999999999999999865432 223212 22222333444 33 256799999996
No 216
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.69 E-value=2.4e-08 Score=75.93 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=44.1
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.|+++|.||||||||.||+++.+. ..+..|.+..|.......+ .+.. +.+.||+|-|
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~--f~lIDTgGl~ 62 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGRE--FILIDTGGLD 62 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCce--EEEEECCCCC
Confidence 699999999999999999997655 3344466666666677777 5554 8899999954
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.68 E-value=4.6e-08 Score=68.33 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCC-----------cc------CCceeEeE--EEEEEec--CCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKD-----------YK------GTVGVDFA--LKIVKWR--DQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~-----------~~------~t~~~~~~--~~~~~~~--~~~~~~l~i~Dt~Gq 130 (131)
+++++|..++|||||+.+++...+... +. ...+..+. ...+.+. ++..+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986443221 00 11112221 1222221 355788999999998
Q ss_pred C
Q psy10878 131 N 131 (131)
Q Consensus 131 e 131 (131)
+
T Consensus 82 ~ 82 (213)
T cd04167 82 V 82 (213)
T ss_pred c
Confidence 4
No 218
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.68 E-value=2.8e-08 Score=68.51 Aligned_cols=56 Identities=14% Similarity=0.326 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC-CCc-cCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK-KDY-KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+|+++|.+|+|||||+|.+++.... ... .+............+ ++. .+.++||||-
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~--~i~viDTPG~ 59 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGR--RVNVIDTPGL 59 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCe--EEEEEECcCC
Confidence 6999999999999999999976432 221 111222222333344 443 5789999994
No 219
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.68 E-value=4.3e-08 Score=76.26 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..|++||.||+|||||++++.+.+......|.+......-.+.+ ++ ..+.||||||.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~-~~--~~f~laDtPGl 216 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA-GD--TRFTVADVPGL 216 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE-CC--eEEEEEECCCC
Confidence 47999999999999999999865443222233333333444544 33 46899999994
No 220
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.67 E-value=6.6e-08 Score=73.55 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFK 96 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~ 96 (131)
+++.++|.||||||||+|++.+..+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~ 27 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE 27 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc
Confidence 58999999999999999999977664
No 221
>KOG1423|consensus
Probab=98.66 E-value=1e-07 Score=69.53 Aligned_cols=63 Identities=24% Similarity=0.369 Sum_probs=42.9
Q ss_pred CCCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCC-c-cCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 63 FNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKD-Y-KGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 63 ~~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
.+....+.+.++++|.||||||+|.|.+++.+.... . ..|+.... .-.+ ......+.++||||
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i-lgi~---ts~eTQlvf~DTPG 129 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI-LGII---TSGETQLVFYDTPG 129 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee-eEEE---ecCceEEEEecCCc
Confidence 345567889999999999999999999998765421 1 12322222 1222 22346789999999
No 222
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.66 E-value=3.8e-08 Score=79.70 Aligned_cols=63 Identities=14% Similarity=0.258 Sum_probs=44.4
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeE--eEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVD--FALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+...|+++|..++|||||++++....+.....+++..+ .....+.. ++....+.||||||++
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~-~~~~~kItfiDTPGhe 306 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY-KDENQKIVFLDTPGHE 306 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe-cCCceEEEEEECCcHH
Confidence 455689999999999999999999877765444333322 22223333 4456789999999974
No 223
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.66 E-value=1.5e-08 Score=72.86 Aligned_cols=62 Identities=27% Similarity=0.510 Sum_probs=39.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEE-EEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALK-IVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....++++++|.+|+||||++|++..+...+...-.++.+.... ...+ +++ .+.||||||-+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~--~l~lwDtPG~g 98 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGE--NLVLWDTPGLG 98 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-ccc--ceEEecCCCcc
Confidence 34568999999999999999999986554332211222222111 1122 443 47899999953
No 224
>KOG1191|consensus
Probab=98.65 E-value=3.9e-08 Score=75.39 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=45.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..++++++|.||||||||+|.+...+. ..+..|.+..|.....+++ +|. .+.|.||||-
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~--~v~L~DTAGi 326 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGV--PVRLSDTAGI 326 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCe--EEEEEecccc
Confidence 458999999999999999999996554 3455566666666667776 775 4679999993
No 225
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.63 E-value=5.3e-08 Score=63.25 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=35.1
Q ss_pred EEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 75 VIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 75 vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
++|.+|+|||||++++.+.... ....+............. + ....+.+|||+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Dt~g~~ 56 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL-G-PLGPVVLIDTPGID 56 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe-c-CCCcEEEEECCCCC
Confidence 5899999999999999865443 222233232333333332 2 14568999999963
No 226
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.63 E-value=8.3e-08 Score=66.10 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=41.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
...-|+++|.+|||||||+|.+++..-......|.|.+....-+.+ ++. +.+.|.||
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~-~~~---~~lVDlPG 79 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV-DDE---LRLVDLPG 79 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe-cCc---EEEEeCCC
Confidence 4456999999999999999999986633344456665554445555 443 67999998
No 227
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.63 E-value=8.4e-08 Score=71.52 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.|.+||.||||||||++++...+.. ..| |.+......-.+.+.++ ..+.+|||||+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~y-pfTT~~p~~G~v~~~~~--~~~~i~D~PGl 216 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADY-PFTTLHPNLGVVRVDDY--KSFVIADIPGL 216 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCC-CCceeCceEEEEEeCCC--cEEEEEeCCCc
Confidence 5899999999999999999865432 223 22232333334444222 35789999995
No 228
>KOG0075|consensus
Probab=98.62 E-value=3.4e-08 Score=64.91 Aligned_cols=60 Identities=25% Similarity=0.513 Sum_probs=48.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+.+.++|..++|||||.|..+.+.+.+...||+|.+. ..+ +...+.+.+||.+||-
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~---tkgnvtiklwD~gGq~ 76 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKV---TKGNVTIKLWDLGGQP 76 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEe---ccCceEEEEEecCCCc
Confidence 34567899999999999999999999899988889999544 444 3345788999999983
No 229
>COG1159 Era GTPase [General function prediction only]
Probab=98.60 E-value=9.5e-08 Score=69.32 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=39.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+.-.++++|.||||||||+|++++.... .+..|.+.... .+.+.. ++ ..++-+.||||-
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~-I~GI~t-~~-~~QiIfvDTPGi 64 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-IRGIVT-TD-NAQIIFVDTPGI 64 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhh-eeEEEE-cC-CceEEEEeCCCC
Confidence 4557999999999999999999987652 23333333222 333332 22 466789999993
No 230
>PTZ00258 GTP-binding protein; Provisional
Probab=98.59 E-value=9.8e-08 Score=72.30 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=40.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCe--------------EEEEEEEeCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ--------------KIKLQLWDIAG 129 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G 129 (131)
...+++.++|.||||||||+|++.+........|..+.+...-.+.+.+.. ...+++.||||
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 356799999999999999999997655433333444433333334332211 23589999999
No 231
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.58 E-value=1.4e-07 Score=72.30 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.|+++|.||||||||++++.+.+.. ..| |.+......-.+.+.++ ..+.+|||||.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~y-pfTTl~PnlG~v~~~~~--~~~~laD~PGl 216 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANY-HFTTLVPNLGVVETDDG--RSFVMADIPGL 216 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccC-CcceeceEEEEEEEeCC--ceEEEEECCCC
Confidence 6999999999999999999965532 222 22222222223333112 45889999995
No 232
>PRK10218 GTP-binding protein; Provisional
Probab=98.58 E-value=2.1e-07 Score=74.18 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=43.7
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh--CcCCCCc------------cCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ--NTFKKDY------------KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+|+++|..++|||||+.+|+. +.|...+ ..+.+.++..+...+ +...+++++|||||++
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~ 79 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHA 79 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcc
Confidence 45899999999999999999996 4443221 234555555555444 4456889999999984
No 233
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.57 E-value=1.5e-07 Score=68.07 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.+|+|||||+++++.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999874
No 234
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.57 E-value=7.2e-08 Score=64.45 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.+|+|||||+|++.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~ 23 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG 23 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 699999999999999999764
No 235
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.56 E-value=1e-07 Score=75.65 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCC----ccCCceeEeEEEEEEe------cCCeE-----EEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKD----YKGTVGVDFALKIVKW------RDQQK-----IKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~------~~~~~-----~~l~i~Dt~Gqe 131 (131)
-|+++|.+++|||||++++.+..+... +.+++|..+....... ..... ..+.||||||||
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 499999999999999999998766533 2234444332111100 00011 238899999986
No 236
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.54 E-value=2.2e-07 Score=68.31 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=41.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
......+++.|.||||||||++.+.+-+-.....|-+.-....-.+.. ...++|+.||||-
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~---~~~R~QvIDTPGl 225 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER---GYLRIQVIDTPGL 225 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec---CCceEEEecCCcc
Confidence 334568999999999999999998865543332343333344444433 3357899999993
No 237
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.53 E-value=2e-07 Score=66.33 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+++++|..++|||||+++++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~ 21 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLY 21 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999985
No 238
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.51 E-value=2.5e-07 Score=70.94 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=41.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcC-C------------------------------CCccCCceeEeEEEEEEec
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTF-K------------------------------KDYKGTVGVDFALKIVKWR 115 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~-~------------------------------~~~~~t~~~~~~~~~~~~~ 115 (131)
+...++++++|.+++|||||+++++...- . ++..+.+..+.....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 34568999999999999999999983211 0 111233444444444443
Q ss_pred CCeEEEEEEEeCCCCC
Q psy10878 116 DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 116 ~~~~~~l~i~Dt~Gqe 131 (131)
..+.+.||||||++
T Consensus 82 --~~~~i~liDtpG~~ 95 (425)
T PRK12317 82 --DKYYFTIVDCPGHR 95 (425)
T ss_pred --CCeEEEEEECCCcc
Confidence 44678999999975
No 239
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.50 E-value=2.7e-07 Score=70.10 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.|.+||.||||||||+|++.+.+......|.+......-.+.+.++ ..+.++||||.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~--~~i~~vDtPGi 217 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE--RSFVVADIPGL 217 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC--cEEEEEeCCCc
Confidence 5899999999999999999865443222232222222333433222 34789999995
No 240
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.50 E-value=1.3e-07 Score=66.10 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCc----cCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDY----KGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
++|+++|.+|+||||++|.+++....... ..|.... .....+ +|. .+.++||||
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~--~~~~~~-~g~--~v~VIDTPG 58 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQ--KYSGEV-DGR--QVTVIDTPG 58 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-E--EEEEEE-TTE--EEEEEE--S
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccc--eeeeee-cce--EEEEEeCCC
Confidence 47999999999999999999976543222 1222222 223344 664 468999998
No 241
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.49 E-value=2e-07 Score=69.29 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=47.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCC----------ccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKD----------YKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
.....+.++++|.+|.|||||+|.+++...... ..+++........+.- +|..+.|++.||+|
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~~~l~vIDtpG 91 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEE-DGFHLNLTVIDTPG 91 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeec-CCeEEEEEEeccCC
Confidence 346678999999999999999999997633222 2355555555555543 78889999999999
No 242
>KOG3883|consensus
Probab=98.48 E-value=3.4e-07 Score=60.67 Aligned_cols=61 Identities=26% Similarity=0.404 Sum_probs=48.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC--CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF--KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+..|++++|..+||||+++.+++.++. ..++.||+.+-| ...+.-.+|..-.+.|+||+|-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGl 70 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGL 70 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccc
Confidence 457999999999999999999985544 346778888655 5666555677788999999983
No 243
>KOG2655|consensus
Probab=98.48 E-value=1.7e-07 Score=69.89 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=48.5
Q ss_pred CCcccCCCCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCC---------ccCCceeEeEEEEEEecCCeEEEEEEEeC
Q psy10878 57 PSIRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKD---------YKGTVGVDFALKIVKWRDQQKIKLQLWDI 127 (131)
Q Consensus 57 ~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt 127 (131)
|..+.+........|.++++|++|.|||||+|.++...+... ...|+.+......+.- +|..+.|++.||
T Consensus 8 P~q~~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee-~g~~l~Ltvidt 86 (366)
T KOG2655|consen 8 PNQVHRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE-NGVKLNLTVIDT 86 (366)
T ss_pred hHHHHHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC-CCeEEeeEEecc
Confidence 333333333455678999999999999999999776544322 1224444444344433 788999999999
Q ss_pred CC
Q psy10878 128 AG 129 (131)
Q Consensus 128 ~G 129 (131)
||
T Consensus 87 PG 88 (366)
T KOG2655|consen 87 PG 88 (366)
T ss_pred CC
Confidence 98
No 244
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.48 E-value=1.4e-07 Score=65.66 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+++++|.+++|||||+++++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~ 21 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLY 21 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 245
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.47 E-value=4e-07 Score=68.40 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCe--------------EEEEEEEeCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ--------------KIKLQLWDIAG 129 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G 129 (131)
+++.++|.||||||||+|++.+........|..+.+...-.+.+.+.+ ...+++.||||
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pG 75 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAG 75 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCC
Confidence 689999999999999999998765432222333333333333332211 13589999999
No 246
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.46 E-value=2.1e-07 Score=67.61 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=36.9
Q ss_pred EEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCe--------------EEEEEEEeCCC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ--------------KIKLQLWDIAG 129 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G 129 (131)
+.++|.||||||||+|++.+........|..+.+.....+.+.+.+ ...++++||||
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pG 71 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAG 71 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCC
Confidence 4689999999999999998765533333443333333334432211 23589999999
No 247
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.45 E-value=4.3e-07 Score=72.26 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
-.|+++|.+++|||||++++.+..+
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v 31 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAV 31 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc
Confidence 3699999999999999999976543
No 248
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.45 E-value=5.8e-07 Score=71.39 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=46.1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..+++++|.||||||||.|++.+.+....+-|.+.++...-.+.+ .+.. +++.|.||.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~-~~~~--i~ivDLPG~ 60 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY-KGHE--IEIVDLPGT 60 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe-cCce--EEEEeCCCc
Confidence 346999999999999999999976555455588888877777776 4543 789999994
No 249
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.44 E-value=4.2e-07 Score=69.77 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=42.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhh--CcCC-----------------------------CCccCCceeEeEEEEEEec
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQ--NTFK-----------------------------KDYKGTVGVDFALKIVKWR 115 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~ 115 (131)
+...++++++|..++|||||+.+++. +... .+...++..+.....+.+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 34568999999999999999999984 2221 112234455555555544
Q ss_pred CCeEEEEEEEeCCCCC
Q psy10878 116 DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 116 ~~~~~~l~i~Dt~Gqe 131 (131)
..+.+.||||||++
T Consensus 83 --~~~~i~iiDtpGh~ 96 (426)
T TIGR00483 83 --DKYEVTIVDCPGHR 96 (426)
T ss_pred --CCeEEEEEECCCHH
Confidence 34678999999975
No 250
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.42 E-value=2e-07 Score=66.16 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCC---CccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKK---DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|++++|.+++||||+......+-.+. .-.+|...+. ..+.. .+ .+.++|||.+||+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~--~~v~~-~~-~~~l~iwD~pGq~ 59 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK--SHVRF-LS-FLPLNIWDCPGQD 59 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE--EEEEC-TT-SCEEEEEEE-SSC
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE--EEEec-CC-CcEEEEEEcCCcc
Confidence 79999999999999888766432221 1225554443 33332 22 3578999999995
No 251
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.37 E-value=4.4e-07 Score=65.52 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.+|+|||||+++++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~ 21 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLY 21 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 252
>KOG1547|consensus
Probab=98.35 E-value=1.5e-06 Score=61.74 Aligned_cols=61 Identities=18% Similarity=0.356 Sum_probs=42.7
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCC---------CccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKK---------DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
...|+|+|||.+|.|||||+|.+....... .+..|+........+.- +|...+|++.||+|
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE-~gVklkltviDTPG 113 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEE-KGVKLKLTVIDTPG 113 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeee-cceEEEEEEecCCC
Confidence 357899999999999999999876433322 12224444443444443 78889999999998
No 253
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.34 E-value=1.2e-07 Score=71.32 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++|+|+|++|+|||||||.+.+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999999999999975
No 254
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.34 E-value=9.3e-07 Score=70.56 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=39.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhC--cCC-----CCc------cCCceeEeEE--EEEEec--CCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQN--TFK-----KDY------KGTVGVDFAL--KIVKWR--DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~--~~~-----~~~------~~t~~~~~~~--~~~~~~--~~~~~~l~i~Dt~Gqe 131 (131)
.-+++++|..++|||||+.+++.. .+. ..+ ..+.|.++.. ..+.+. ++..+.++||||||++
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 347999999999999999999852 111 111 0112222222 222221 5667899999999984
No 255
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.28 E-value=3.2e-06 Score=67.69 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=38.5
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCc-CCCCc-cCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNT-FKKDY-KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~-~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...++|+++|.+||||||++|.+++.. |.... .+.+.. .......+ +| ..+.++||||-
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~i-dG--~~L~VIDTPGL 176 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLV-QG--VKIRVIDTPGL 176 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEE-CC--ceEEEEECCCC
Confidence 456789999999999999999999764 33221 122221 11112233 44 45899999994
No 256
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.25 E-value=1.6e-06 Score=70.58 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=41.1
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC---------------cCCCC---ccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN---------------TFKKD---YKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...+|+++|..++|||||+.+++.. .+... +..|+...+....+.+ ++..+.+.+|||||+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~-~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY-EGNEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee-cCCceEEEEEeCCCc
Confidence 3468999999999999999999742 11111 2224433332223334 556788999999997
Q ss_pred C
Q psy10878 131 N 131 (131)
Q Consensus 131 e 131 (131)
+
T Consensus 97 ~ 97 (720)
T TIGR00490 97 V 97 (720)
T ss_pred c
Confidence 4
No 257
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.25 E-value=2.5e-06 Score=68.30 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=38.7
Q ss_pred EEEEEcCCCCCchhhhhhhhh---CcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ---NTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
-|.++|..++|||||++++.+ ..+.++....+..+.....+...++. .+.+|||||+|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe 62 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHE 62 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHH
Confidence 478999999999999999984 34444443344444433333332343 47899999985
No 258
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.22 E-value=2.1e-06 Score=60.57 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+++++|..+.|||||+.+++.
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~ 22 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLA 22 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 259
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.21 E-value=3.7e-06 Score=61.02 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCchhhhhhhhh--CcCC----------------CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ--NTFK----------------KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~--~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+++++|.+++|||||+++++. +... .+....+..+.....+.+ ++ .++.+|||||.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~--~~i~liDTPG~ 74 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KD--HRINIIDTPGH 74 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CC--EEEEEEECCCc
Confidence 478999999999999999873 1110 111123333334455556 43 56889999996
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.19 E-value=3.9e-06 Score=66.13 Aligned_cols=62 Identities=16% Similarity=0.330 Sum_probs=38.1
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh-CcCCCC-------------------ccCCceeEeEEEEEEecCCeEEEEEEEeCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ-NTFKKD-------------------YKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~-~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~ 128 (131)
+..+++++|.+++|||||+.+++. ...... .....|..+......+ +...+.+++||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~-~~~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF-PYRDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-eeCCeEEEEEECC
Confidence 345899999999999999999862 211100 0011222333333333 3345789999999
Q ss_pred CCC
Q psy10878 129 GQN 131 (131)
Q Consensus 129 Gqe 131 (131)
|++
T Consensus 89 G~~ 91 (527)
T TIGR00503 89 GHE 91 (527)
T ss_pred Chh
Confidence 974
No 261
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.18 E-value=2.4e-06 Score=68.17 Aligned_cols=57 Identities=19% Similarity=0.430 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh--CcCCCCc------------cCCceeEeE--EEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ--NTFKKDY------------KGTVGVDFA--LKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~--~~~~~~~------------~~t~~~~~~--~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|+++|..++|||||+.+++. +.+.... ....|.++. ...+.+ ..++++||||||++
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~---~~~kinlIDTPGh~ 75 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY---NGTKINIVDTPGHA 75 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE---CCEEEEEEECCCHH
Confidence 699999999999999999985 3332211 011222332 334455 34778999999973
No 262
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.17 E-value=3.7e-06 Score=63.97 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=39.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhC-------cC---------CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQN-------TF---------KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~-------~~---------~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++++++|..++|||||+.++++. ++ ..+....+..+.. .+.+ +.....+.||||||+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~-~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEY-ETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEE-cCCCEEEEEEECCch
Confidence 345689999999999999999999732 00 1111233333332 3333 334456889999998
Q ss_pred C
Q psy10878 131 N 131 (131)
Q Consensus 131 e 131 (131)
+
T Consensus 86 ~ 86 (394)
T TIGR00485 86 A 86 (394)
T ss_pred H
Confidence 5
No 263
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.15 E-value=3.7e-06 Score=61.94 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=40.5
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
.+..-..+++||.|+||||||++.+.+-.. ...|.-| ..+..--.+.+ +| ..+||.|+||
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FT-Tl~~VPG~l~Y-~g--a~IQild~Pg 119 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFT-TLEPVPGMLEY-KG--AQIQLLDLPG 119 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCce-ecccccceEee-cC--ceEEEEcCcc
Confidence 355567899999999999999999885433 2344322 22232334555 44 5689999997
No 264
>PRK13351 elongation factor G; Reviewed
Probab=98.13 E-value=3.7e-06 Score=68.12 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=38.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC-------------CC-------CccCCceeEeEEEEEEecCCeEEEEEEEeCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF-------------KK-------DYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~ 128 (131)
...+|+++|..++|||||+++++...- .. .+..|+... ...+.+ + .+.+++||||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~--~~~~~~-~--~~~i~liDtP 81 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA--ATSCDW-D--NHRINLIDTP 81 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc--eEEEEE-C--CEEEEEEECC
Confidence 456899999999999999999984210 00 122233322 234444 3 4678999999
Q ss_pred CCC
Q psy10878 129 GQN 131 (131)
Q Consensus 129 Gqe 131 (131)
|+.
T Consensus 82 G~~ 84 (687)
T PRK13351 82 GHI 84 (687)
T ss_pred CcH
Confidence 973
No 265
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.13 E-value=1.7e-06 Score=54.65 Aligned_cols=34 Identities=44% Similarity=0.555 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCcc-CCce
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYK-GTVG 104 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~-~t~~ 104 (131)
+|++++|+.|||||+|+.||....|...+. +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence 489999999999999999998887765554 5544
No 266
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.12 E-value=3.4e-06 Score=66.44 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCchhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~ 91 (131)
..+++++|.+++|||||+.+++
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll 31 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLL 31 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999987
No 267
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.11 E-value=5e-06 Score=54.76 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
|++++|..++|||||++++.+.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC
Confidence 799999999999999999886544
No 268
>KOG0072|consensus
Probab=98.09 E-value=2e-06 Score=56.49 Aligned_cols=56 Identities=29% Similarity=0.634 Sum_probs=45.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..++++++|.-|+|||+++.|+--++.. ...||+| |...++.+ +..++++||..||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtig--fnve~v~y---KNLk~~vwdLggq 72 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIG--FNVETVPY---KNLKFQVWDLGGQ 72 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCC--cCcccccc---ccccceeeEccCc
Confidence 6789999999999999999998866655 4458888 44556655 6678999999997
No 269
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.08 E-value=8.8e-06 Score=57.48 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=39.6
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhC--cCCCC---ccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQN--TFKKD---YKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..-|.++|.+++|||+|+|++++. .|... ...|.|+......+ ..+....+.++||+|.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~--~~~~~~~v~~lDteG~ 70 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPF--KLGKEHAVLLLDTEGT 70 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccc--cCCCcceEEEEecCCc
Confidence 345899999999999999999987 66432 22344443322222 1223467899999995
No 270
>PRK12735 elongation factor Tu; Reviewed
Probab=98.07 E-value=9e-06 Score=61.97 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++++|..++|||||++++++
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHH
Confidence 3468999999999999999999985
No 271
>PLN03126 Elongation factor Tu; Provisional
Probab=98.05 E-value=9.6e-06 Score=63.22 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=39.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhC------cC----------CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQN------TF----------KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~------~~----------~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++++++|..++|||||+++++.. .. .++....+..+.....+.. + ...+.++||||+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~--~~~i~liDtPGh 154 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-E--NRHYAHVDCPGH 154 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-C--CcEEEEEECCCH
Confidence 455789999999999999999999851 11 1122223333333333333 3 346789999997
Q ss_pred C
Q psy10878 131 N 131 (131)
Q Consensus 131 e 131 (131)
+
T Consensus 155 ~ 155 (478)
T PLN03126 155 A 155 (478)
T ss_pred H
Confidence 4
No 272
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.04 E-value=7.1e-06 Score=56.94 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
+++.++|..++|||||+..+.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~ 22 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG 22 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998753
No 273
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.02 E-value=1.3e-05 Score=54.53 Aligned_cols=61 Identities=26% Similarity=0.374 Sum_probs=42.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcC--------CCCc----cCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTF--------KKDY----KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~--------~~~~----~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....||++.|.-++|||+++.+...... ..++ ..|+..+|....+ .+ ...+.++|||||+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~~--~~~v~LfgtPGq~ 79 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--DE--DTGVHLFGTPGQE 79 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--cC--cceEEEecCCCcH
Confidence 45678999999999999999999886542 1122 2355666654433 12 2458999999996
No 274
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.01 E-value=1.8e-05 Score=64.26 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=39.6
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC-C---CC--------------ccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF-K---KD--------------YKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~-~---~~--------------~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...+|+++|..++|||||+++++...- . .. ....+..+.....+.+ ++ ..+.+|||||+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~--~~i~liDTPG~ 85 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KG--HRINIIDTPGH 85 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CC--eEEEEEECCCC
Confidence 345899999999999999999973211 0 00 1123333444555666 43 57899999997
Q ss_pred C
Q psy10878 131 N 131 (131)
Q Consensus 131 e 131 (131)
.
T Consensus 86 ~ 86 (689)
T TIGR00484 86 V 86 (689)
T ss_pred c
Confidence 3
No 275
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.00 E-value=1.1e-05 Score=56.70 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~ 91 (131)
+|+++|..++|||||+.+++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll 20 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLL 20 (219)
T ss_pred CEEEecCCCCChHHHHHHHH
Confidence 48899999999999999886
No 276
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.00 E-value=1.4e-05 Score=55.26 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++++|..++|||||+++++.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~ 24 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITK 24 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 277
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.98 E-value=1.9e-06 Score=58.93 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++++|++|+|||+|..++..+.+...+.+. ... ..+.+.+...-.+.+.|+||.+
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n---~~~~~~~~~~~~~~lvD~PGH~ 60 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN---IAYNVNNSKGKKLRLVDIPGHP 60 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE---EECCGSSTCGTCECEEEETT-H
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC---ceEEeecCCCCEEEEEECCCcH
Confidence 5899999999999999999988655333222 111 1111112233457899999973
No 278
>CHL00071 tufA elongation factor Tu
Probab=97.94 E-value=2.4e-05 Score=59.87 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=23.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
+...++++++|.+++|||||++++++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~ 34 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITM 34 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999985
No 279
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.92 E-value=6.8e-06 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..+|+++|..++|||||+.+++.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~ 25 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLG 25 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCcEeechhhhh
Confidence 46899999999999999999884
No 280
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.92 E-value=1.1e-05 Score=61.71 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
....++++++|..++|||||+.++.+
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~ 31 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTG 31 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhC
Confidence 34568999999999999999988853
No 281
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.91 E-value=1.2e-05 Score=61.41 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..++++++|..++|||||+.++.+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~ 26 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTG 26 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhC
Confidence 467999999999999999998864
No 282
>PRK12736 elongation factor Tu; Reviewed
Probab=97.88 E-value=2.6e-05 Score=59.42 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=38.3
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCc-------C---------CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNT-------F---------KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...++++++|..++|||||+.++++.. + ..+....+..+.. ...+ ......+.+|||||++
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~-~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEY-ETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEe-cCCCcEEEEEECCCHH
Confidence 346899999999999999999987521 1 0111222333332 2333 2233467899999974
No 283
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.84 E-value=2.3e-05 Score=59.91 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCchhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~ 91 (131)
++++++|..++|||||+.+++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll 21 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLL 21 (406)
T ss_pred CeEEEECCCCCCchhhhHHHH
Confidence 479999999999999999987
No 284
>KOG3859|consensus
Probab=97.82 E-value=3.6e-05 Score=55.96 Aligned_cols=62 Identities=16% Similarity=0.340 Sum_probs=45.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCc----cCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDY----KGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
+...++|+.||..|.|||||+..+.+-.|.... .|++.....+..+.- .+..++|.|.||.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE-snvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE-SNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh-cCeeEEEEEEeecc
Confidence 556889999999999999999999987775432 244443333333333 56789999999998
No 285
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.79 E-value=3.5e-05 Score=62.03 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..++++++|.+++|||||+++++.
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~ 46 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLY 46 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHH
Confidence 457899999999999999999985
No 286
>PRK12739 elongation factor G; Reviewed
Probab=97.79 E-value=5e-05 Score=61.75 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=39.9
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC--cC--C--------------CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN--TF--K--------------KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~--~~--~--------------~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...+|+++|..++|||||+++++.. .. . .+....+..+.....+.+ ++ ..+.+|||||+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~--~~i~liDTPG~ 83 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KG--HRINIIDTPGH 83 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CC--EEEEEEcCCCH
Confidence 4568999999999999999999742 10 0 011233444444556666 44 46789999995
No 287
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.78 E-value=2e-05 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK 96 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~ 96 (131)
|++++|+.++|||||+++|..+.|.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~ 25 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELD 25 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcC
Confidence 5899999999999999999976554
No 288
>KOG1491|consensus
Probab=97.78 E-value=6.5e-05 Score=55.81 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=41.8
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEec--------------CCeEEEEEEEeCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWR--------------DQQKIKLQLWDIAG 129 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~l~i~Dt~G 129 (131)
...+|+-+||.||||||||+|.+..........|-..++.....+.+. ...+..|+++|+||
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 356799999999999999999998765544444544433332222211 22356799999998
No 289
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.77 E-value=5.5e-05 Score=59.03 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++++|..++|||||+.+++.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~ 49 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLH 49 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHH
Confidence 4568999999999999999999884
No 290
>KOG3886|consensus
Probab=97.77 E-value=1e-05 Score=57.25 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
-|++++|.+|+||||+--.+..+.. .....++...++.-.++.+ -|. +.|++||..|||
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf-lGn-l~LnlwDcGgqe 64 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF-LGN-LVLNLWDCGGQE 64 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh-hhh-heeehhccCCcH
Confidence 4899999999999998765542211 1111233333443344444 332 568999999996
No 291
>KOG0076|consensus
Probab=97.75 E-value=1.9e-05 Score=53.39 Aligned_cols=58 Identities=24% Similarity=0.567 Sum_probs=40.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC---cC----CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN---TF----KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~---~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+.++++|..++|||+|+-+.-.. .+ .....||+|.+.. ++.+ + ...+.+||..|||
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v-~--~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEV-C--NAPLSFWDLGGQE 80 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceee-c--cceeEEEEcCChH
Confidence 4578999999999999999764421 11 1245578886554 4444 4 3458899999996
No 292
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.73 E-value=7.3e-06 Score=59.32 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=42.4
Q ss_pred ccCCCcEEeeccCCCcccccccc---c------ccCCCCccccccCCcccccccccccccccCCCcccCC
Q psy10878 3 YKAKKPILLPSASEDPSIDNWDK---A------SWENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSF 63 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~~---~------~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (131)
...++|+++|+||+|+....... . .+..++++||+++.| +.++++.+.+.+ |..+..+
T Consensus 104 ~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g-i~~L~~~l~~~l--~~~~~~~ 170 (270)
T TIGR00436 104 QNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDN-TSFLAAFIEVHL--PEGPFRY 170 (270)
T ss_pred HhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCC-HHHHHHHHHHhC--CCCCCCC
Confidence 34578999999999996432211 1 114789999999999 999999988877 4444433
No 293
>PLN03127 Elongation factor Tu; Provisional
Probab=97.72 E-value=9.4e-05 Score=57.34 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=39.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhC------c----------CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQN------T----------FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~------~----------~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++++++|-.++|||||++++.+. . ..++..+.+..+.....+.. ...++.+.||||.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~---~~~~i~~iDtPGh 134 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET---AKRHYAHVDCPGH 134 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC---CCeEEEEEECCCc
Confidence 445689999999999999999998621 1 01122234444443333332 3356789999997
Q ss_pred C
Q psy10878 131 N 131 (131)
Q Consensus 131 e 131 (131)
+
T Consensus 135 ~ 135 (447)
T PLN03127 135 A 135 (447)
T ss_pred c
Confidence 4
No 294
>COG1159 Era GTPase [General function prediction only]
Probab=97.71 E-value=9.7e-06 Score=59.03 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=45.3
Q ss_pred ccCCCcEEeeccCCCccccccc-c---------cccCCCCccccccCCcccccccccccccccCCCcccCCC
Q psy10878 3 YKAKKPILLPSASEDPSIDNWD-K---------ASWENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFN 64 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~-~---------~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (131)
++.+.|+++++||+|...+... . -.|.+++|+||+++.+ +..+++.+..++ |.....++
T Consensus 111 k~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n-~~~L~~~i~~~L--peg~~~yp 179 (298)
T COG1159 111 KKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN-VDTLLEIIKEYL--PEGPWYYP 179 (298)
T ss_pred hhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC-HHHHHHHHHHhC--CCCCCcCC
Confidence 4457899999999998766542 1 1128899999999999 999999998888 55554444
No 295
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.70 E-value=7.7e-05 Score=56.31 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
+|+.++|.||+|||||.+.+.+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~ 27 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLG 27 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCc
Confidence 6899999999999999999886554
No 296
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00014 Score=48.86 Aligned_cols=56 Identities=30% Similarity=0.527 Sum_probs=40.6
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~ 128 (131)
..+|+.+-|.|||||||++.+..+.-....| +++ -|....+.- +|+.+-+.|.|.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvg-Gf~t~EVR~-gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVG-GFITPEVRE-GGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eee-eEEeeeeec-CCeEeeeEEEEcc
Confidence 3579999999999999999988753222222 233 245666664 8888889999987
No 297
>KOG1490|consensus
Probab=97.63 E-value=4.3e-05 Score=59.35 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=40.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..-.++++|.||||||||++..........+.+.+...+..-.+.+ +-...++.||||-
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy---kYlrwQViDTPGI 225 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY---KYLRWQVIDTPGI 225 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh---heeeeeecCCccc
Confidence 4457999999999999999988765554444444443344444433 4566788899984
No 298
>PRK00049 elongation factor Tu; Reviewed
Probab=97.63 E-value=0.00014 Score=55.47 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++++|..++|||||+++++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHH
Confidence 4568999999999999999999985
No 299
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=9.8e-05 Score=55.45 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
.+++-+||.||||||||.|.+.....
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a 27 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA 27 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc
Confidence 36899999999999999999886544
No 300
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.61 E-value=0.00016 Score=55.98 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++++|..++|||||+.+++.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~ 29 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIY 29 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHH
Confidence 4568999999999999999998874
No 301
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.59 E-value=0.00015 Score=55.55 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
..+-+.++|..++|||||+|+|++.
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhh
Confidence 4567999999999999999999976
No 302
>KOG1707|consensus
Probab=97.56 E-value=9.1e-05 Score=58.32 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=29.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCcc
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYK 100 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~ 100 (131)
....++|+++|+.|||||||+-.++..+|.....
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP 39 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP 39 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccccc
Confidence 4457899999999999999999999999986543
No 303
>PRK00007 elongation factor G; Reviewed
Probab=97.54 E-value=0.00029 Score=57.37 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=39.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh--CcC--CC--------------CccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ--NTF--KK--------------DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~--~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...+|+++|.+++|||||+++++. +.. .. +....+..+.....+.+ ++ ..+.+.||||.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~--~~~~liDTPG~ 85 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KD--HRINIIDTPGH 85 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CC--eEEEEEeCCCc
Confidence 456899999999999999999973 211 00 01233444444555666 44 56889999995
No 304
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.52 E-value=0.00016 Score=48.91 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt 127 (131)
++++-|.+|+||||++++++..-.. ...+.-| |.+..+.- +|..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~-~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRE-NGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEET-TSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccC-CCceEEEEEEEC
Confidence 5899999999999999998843211 1112333 44555543 777777888876
No 305
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.50 E-value=1.7e-05 Score=51.86 Aligned_cols=50 Identities=32% Similarity=0.476 Sum_probs=37.4
Q ss_pred ccCCCcEEeeccCCCcccccccccc---c--CCCCccccccCCccccccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNWDKAS---W--ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~~~~---~--~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
+..++|+++|+||+|+......... . .+++++|++++.| +.++++.+.+.
T Consensus 102 ~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~ 156 (157)
T cd01894 102 RKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRG-IGDLLDAILEL 156 (157)
T ss_pred HhcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCC-HHHHHHHHHhh
Confidence 4457999999999999765432211 2 4779999999999 99888776543
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.46 E-value=0.0002 Score=47.74 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=24.2
Q ss_pred EEEEcCCCCCchhhhhhhhhCcC-CCCccCCce
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVG 104 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~ 104 (131)
|+|+|..++|||||+|.+++... +....|++.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~ 33 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTA 33 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTS
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccccc
Confidence 68999999999999999998764 333334443
No 307
>KOG1486|consensus
Probab=97.29 E-value=0.00067 Score=48.89 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=38.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCc-CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNT-FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+....+++++|.|.||||||+..+..-. -..+|.-|+- ....-.+.+ +|. .+++.|.||.
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTL-tcIpGvi~y-~ga--~IQllDLPGI 119 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTL-TCIPGVIHY-NGA--NIQLLDLPGI 119 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEE-EeecceEEe-cCc--eEEEecCccc
Confidence 4455689999999999999999876322 2234433322 122334455 554 4789999983
No 308
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.29 E-value=7.5e-05 Score=48.95 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=35.3
Q ss_pred CCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.++|+++|+||+|+....... ..+ ...+++|++++.| +.++++.+.+.
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~ 160 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQG-VEEAFYTLVRE 160 (162)
T ss_pred CCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCC-HHHHHHHHHHH
Confidence 478999999999996533211 112 4567999999999 99998876543
No 309
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.28 E-value=0.00049 Score=48.60 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=33.9
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++++|.+|+|||+|++.+....-........|. + .+. .....++.++||+|.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~--~~~~~~i~~vDtPg~ 93 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVV--TGKKRRLTFIECPND 93 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEE--ecCCceEEEEeCCch
Confidence 3467999999999999999988753211111111121 1 111 123455789999984
No 310
>PRK12740 elongation factor G; Reviewed
Probab=97.28 E-value=0.00029 Score=57.15 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=32.8
Q ss_pred EcCCCCCchhhhhhhhhCcCC--C----------------CccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 76 IGDPTVGKTSFVQRYVQNTFK--K----------------DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+|..++|||||+++++...-. . +....+........+.+ ++ +.+.+|||||+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~--~~i~liDtPG~ 70 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KG--HKINLIDTPGH 70 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CC--EEEEEEECCCc
Confidence 589999999999999632110 0 01122333344455655 33 67899999997
No 311
>COG2262 HflX GTPases [General function prediction only]
Probab=97.27 E-value=0.00054 Score=52.05 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=39.6
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
......+.++|.+|+|||||+|++.+........--...+...+.+.+.+|.. +-+-||-|
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~--vlLtDTVG 249 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRK--VLLTDTVG 249 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCce--EEEecCcc
Confidence 34456799999999999999999885444322222222234456666644443 56788877
No 312
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.24 E-value=0.00074 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~ 91 (131)
...++++++|..++|||||+-+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll 28 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLI 28 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHH
Confidence 346789999999999999998876
No 313
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.21 E-value=0.0002 Score=51.35 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=48.9
Q ss_pred CCCcEEeeccCCCcccc-ccccccc---------CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEE-
Q psy10878 5 AKKPILLPSASEDPSID-NWDKASW---------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKV- 73 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~-~~~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki- 73 (131)
.++|+++|.||+|+... .....++ ...+++||+++.| +.++++.+......|...+ +....++
T Consensus 112 ~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g-I~elf~~L~~~~~~p~e~~-----~~~~~~~~ 185 (247)
T cd04143 112 VKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN-LDEMFRALFSLAKLPNEMS-----PSLHRKIS 185 (247)
T ss_pred CCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC-HHHHHHHHHHHhccccccC-----ccccceee
Confidence 46899999999999642 1111111 2468999999999 9999999988776555432 2222333
Q ss_pred EEEcCCCCCchh
Q psy10878 74 IVIGDPTVGKTS 85 (131)
Q Consensus 74 ~vvG~~~vGKSs 85 (131)
+..|++..+|+-
T Consensus 186 ~~~~~~~~~~~~ 197 (247)
T cd04143 186 VQYGDALHKKSR 197 (247)
T ss_pred eeeccccccccc
Confidence 344665555554
No 314
>PRK00089 era GTPase Era; Reviewed
Probab=97.18 E-value=0.00016 Score=52.73 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=38.1
Q ss_pred cCCCcEEeeccCCCcccc-cccc---c------ccCCCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSID-NWDK---A------SWENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~-~~~~---~------~~~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..++|+++|+||+|+... .... . .+.+++++|+..+.| +.++++.+.+.+
T Consensus 111 ~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g-v~~L~~~L~~~l 170 (292)
T PRK00089 111 KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN-VDELLDVIAKYL 170 (292)
T ss_pred hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC-HHHHHHHHHHhC
Confidence 346899999999999733 2111 1 126688999999999 999999888776
No 315
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.18 E-value=0.00015 Score=47.82 Aligned_cols=49 Identities=6% Similarity=0.076 Sum_probs=35.7
Q ss_pred CCCcEEeeccCCCcccccc----ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW----DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~----~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+..... ....+ ...+++|++.+.| +.++++.+.+.+
T Consensus 106 ~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 163 (164)
T cd04145 106 DEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLN-VDKAFHDLVRVI 163 (164)
T ss_pred CCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCC-HHHHHHHHHHhh
Confidence 4789999999999965321 11122 4568999999999 999988776543
No 316
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.14 E-value=0.00032 Score=44.29 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|+|.|.+|+||||+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998875
No 317
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.12 E-value=0.00013 Score=47.89 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCcccc-ccccc-------cc-CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSID-NWDKA-------SW-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~-~~~~~-------~~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+... ..... ++ ..++++|+.++.| +.++++.+.+.+
T Consensus 104 ~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 161 (164)
T cd04139 104 DNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQN-VEKAFYDLVREI 161 (164)
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 47999999999999652 11111 12 5678999999999 999988776544
No 318
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.12 E-value=0.0001 Score=48.19 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=35.7
Q ss_pred cCCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
..++|+++|+||+|+.+..... ..+ ..++++|+.++.| +.++++.+.+.
T Consensus 99 ~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~-~~~l~~~l~~~ 155 (158)
T cd01879 99 ELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEG-IDELKDAIAEL 155 (158)
T ss_pred HcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCC-HHHHHHHHHHH
Confidence 4579999999999996543111 111 4679999999999 88887766543
No 319
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.12 E-value=0.00013 Score=48.50 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCCcEEeeccCCCccccccccc---cc------CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKA---SW------ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~---~~------~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.++|+++|+||+|+.+...... .+ ..++++|++++.| +.++++.+.++
T Consensus 113 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~i~~~ 169 (170)
T cd01898 113 LEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG-LDELLRKLAEL 169 (170)
T ss_pred cccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC-HHHHHHHHHhh
Confidence 4689999999999865432211 11 3468999999999 99888776543
No 320
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.11 E-value=0.00017 Score=47.93 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCCcEEeeccCCCccccccccc----c----c-CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKA----S----W-ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~----~----~-~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.+.|+++|.||+|+.+...... . + ...+++||+++.| +.++++.+.+.
T Consensus 107 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~-v~~~f~~l~~~ 163 (165)
T cd04140 107 EKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHN-VQELFQELLNL 163 (165)
T ss_pred CCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCC-HHHHHHHHHhc
Confidence 4689999999999965221111 1 1 3467899999999 99998877643
No 321
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.11 E-value=0.00014 Score=48.23 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCcEEeeccCCCcccccccc--ccc-----CCCCccccccCCccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK--ASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~--~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
++|+++|+||+|+....... ..+ ..++++|++++.| +.++++.+.+.
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~ 166 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEG-VDEVKNKACEL 166 (168)
T ss_pred cCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCC-HHHHHHHHHHH
Confidence 78999999999986533211 122 4578899999999 99998876654
No 322
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.10 E-value=0.00016 Score=47.66 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=34.6
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.++|+++|+||+|+...... ...+ ...+++||+++.| +.++++.+.+.
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 161 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKIN-VDEVFADLVRQ 161 (163)
T ss_pred CCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCC-HHHHHHHHHHh
Confidence 36899999999998643211 1111 3468999999999 99998877653
No 323
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.08 E-value=7.1e-05 Score=51.17 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=37.1
Q ss_pred ccCCCcEEeeccCCCcccccc------ccccc------C-----CCCccccccCCcccccccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNW------DKASW------E-----NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~------~~~~~------~-----~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+..+.|+++|+||+|+...+. ....+ . .++|+|+.++.| +.+|++.+.+++
T Consensus 119 ~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~g-i~~Ll~~l~~~~ 186 (188)
T PF00009_consen 119 RELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDG-IDELLEALVELL 186 (188)
T ss_dssp HHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBT-HHHHHHHHHHHS
T ss_pred cccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCC-HHHHHHHHHHhC
Confidence 456889999999999974211 11111 2 389999999999 999999888776
No 324
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.08 E-value=0.00019 Score=49.46 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCCcEEeeccCCCcccccccc----cccCCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASWENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+....... .....++++|++++.| +.++++.+.+
T Consensus 152 ~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~L~~ 202 (204)
T cd01878 152 EDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEG-LDELLEAIEE 202 (204)
T ss_pred CCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCC-HHHHHHHHHh
Confidence 468999999999996544221 1115678999999999 9988776654
No 325
>PRK04213 GTP-binding protein; Provisional
Probab=97.08 E-value=9e-05 Score=50.93 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=35.8
Q ss_pred cCCCcEEeeccCCCccccc-ccccc----cC----------CCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDN-WDKAS----WE----------NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~-~~~~~----~~----------~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..++|+++|+||+|+.... ....+ ++ .++++||+++ | +.++++.+.+.+
T Consensus 128 ~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-g-i~~l~~~l~~~~ 191 (201)
T PRK04213 128 ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-G-IEELKEAIRKRL 191 (201)
T ss_pred HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-C-HHHHHHHHHHhh
Confidence 3579999999999986432 11111 11 3589999999 9 999998887765
No 326
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.06 E-value=0.00023 Score=47.77 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCcccccc--ccccc--------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DKASW--------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~~~~--------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+..... ...++ ..++++|++++.| +.++++.+.+.+
T Consensus 118 ~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 176 (179)
T cd01890 118 NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLG-VEDLLEAIVERI 176 (179)
T ss_pred cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCC-HHHHHHHHHhhC
Confidence 4789999999999854321 11111 2468999999999 999988887665
No 327
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.06 E-value=0.00017 Score=47.53 Aligned_cols=46 Identities=13% Similarity=0.011 Sum_probs=33.3
Q ss_pred CCCcEEeeccCCCccccc---cccccc---------CCCCccccccCCccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN---WDKASW---------ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~---~~~~~~---------~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
.++|+++|+||+|+.+.. .....+ ..++++|++++.| +.++++.+.
T Consensus 99 ~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~ 156 (158)
T cd04151 99 KGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG-LDEGMDWLV 156 (158)
T ss_pred cCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC-HHHHHHHHh
Confidence 378999999999986432 111111 2389999999999 998877654
No 328
>KOG0077|consensus
Probab=97.06 E-value=0.00045 Score=46.59 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=38.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+.-|++++|-.|+|||||++-+-+++. ..+.||.-.. ...+.+ .| ++++-+|..|.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT--SE~l~I-g~--m~ftt~DLGGH 74 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT--SEELSI-GG--MTFTTFDLGGH 74 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC--hHHhee-cC--ceEEEEccccH
Confidence 445899999999999999997766554 3666765322 333444 33 56778888774
No 329
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.04 E-value=0.00017 Score=47.63 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCcccccc----ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW----DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~----~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|.||+|+..... ....+ ...+++|++++.| +.++++.+.+.+
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 161 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVN-VDEAFYDLVREI 161 (164)
T ss_pred CCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 4689999999999865321 11112 4568999999999 999998887654
No 330
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00044 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.726 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhhhhhhhhC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
++++++|.||+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998864
No 331
>PRK07261 topology modulation protein; Provisional
Probab=97.02 E-value=0.00045 Score=46.75 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.+|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 332
>PRK08118 topology modulation protein; Reviewed
Probab=97.02 E-value=0.0005 Score=46.42 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+|+|.+|+|||||...+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998774
No 333
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.98 E-value=0.0013 Score=54.76 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...+|+++|..++|||||+.+++.
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~ 41 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999884
No 334
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.97 E-value=0.00047 Score=44.65 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=17.8
Q ss_pred EEEEcCCCCCchhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~ 91 (131)
++++|.||+||||++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999987
No 335
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.97 E-value=0.0002 Score=53.62 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=36.9
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ..++++||.++.| +.++++.+.+.+
T Consensus 270 ~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G-I~eL~~~L~~~l 327 (335)
T PRK12299 270 ADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG-LDELLRALWELL 327 (335)
T ss_pred ccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC-HHHHHHHHHHHH
Confidence 478999999999986433111 111 4678999999999 999998887665
No 336
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.95 E-value=0.00031 Score=47.11 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=35.5
Q ss_pred CCCcEEeeccCCCcccccc----ccccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW----DKASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~----~~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+... ...++ ..++++||.++.| +.++++.+.+.+
T Consensus 107 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~~~ 165 (169)
T cd01892 107 GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS-SNELFTKLATAA 165 (169)
T ss_pred CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc-HHHHHHHHHHHh
Confidence 4789999999999954321 11222 3468999999999 998887776544
No 337
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.95 E-value=0.0003 Score=46.64 Aligned_cols=47 Identities=11% Similarity=-0.033 Sum_probs=34.1
Q ss_pred CCCcEEeeccCCCcccccccc----ccc------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.+.|+++|+||+|+.+..... ..+ ...+++|++++.| +.+++..+.+
T Consensus 107 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~~~~l~~ 163 (165)
T cd01864 107 SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN-VEEAFLLMAT 163 (165)
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCC-HHHHHHHHHH
Confidence 468899999999996543111 111 3468999999999 9888876654
No 338
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=96.94 E-value=0.0002 Score=55.15 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=36.8
Q ss_pred CCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|.++|+||+|+.........+ ..++++||.++.| +.++++.+.+.+
T Consensus 273 ~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeG-I~eL~~~L~~~l 326 (424)
T PRK12297 273 LERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQG-LDELLYAVAELL 326 (424)
T ss_pred cCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 479999999999985432222222 4578999999999 999998876655
No 339
>PTZ00416 elongation factor 2; Provisional
Probab=96.93 E-value=0.0016 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..+|+++|..++|||||+.+++.
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~ 41 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVC 41 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999999985
No 340
>KOG1489|consensus
Probab=96.93 E-value=0.0013 Score=48.78 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhCc-CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNT-FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
.+-+||.||+|||||++.+...+ ....|.-|+ .....-++.+.+.. .+.+-|.||
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-L~P~iG~v~yddf~--q~tVADiPG 253 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-LRPHIGTVNYDDFS--QITVADIPG 253 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceee-eccccceeeccccc--eeEeccCcc
Confidence 46799999999999999988532 233443221 11122234442332 278889888
No 341
>PRK09866 hypothetical protein; Provisional
Probab=96.92 E-value=0.0003 Score=56.61 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=38.2
Q ss_pred CcEEeeccCCCcccccc----cc-c-----------ccCCCCccccccCCcccccccccccccccCCC
Q psy10878 7 KPILLPSASEDPSIDNW----DK-A-----------SWENVTPIVSEQGDGEIIEIIDPSLKLVRVPS 58 (131)
Q Consensus 7 kp~vlv~NK~Dl~~~~~----~~-~-----------~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~ 58 (131)
+|+++|+||+|+.+.+. .. . .|.+++|+||..+.| +.++++.+...-++|.
T Consensus 290 ~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~n-id~LLdeI~~~~~l~~ 356 (741)
T PRK09866 290 VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYL-ANRARHELANNGKLPP 356 (741)
T ss_pred CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC-HHHHHHHHHhCCCCCc
Confidence 49999999999864211 11 1 125789999999999 9999999888765543
No 342
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.92 E-value=0.00013 Score=48.61 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=35.0
Q ss_pred CCCcEEeeccCCCcccccccccc----c-----CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKAS----W-----ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~----~-----~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+......... . ..++++|+.++.| +.++++.+..
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-l~~l~~~l~~ 174 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEG-LDELIRAIYE 174 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcC-HHHHHHHHHh
Confidence 47999999999999654322211 1 6689999999999 9888776543
No 343
>PRK15494 era GTPase Era; Provisional
Probab=96.92 E-value=0.00024 Score=53.23 Aligned_cols=57 Identities=11% Similarity=-0.026 Sum_probs=40.4
Q ss_pred cCCCcEEeeccCCCcccccc-cccc-------cCCCCccccccCCcccccccccccccccCCCcccCC
Q psy10878 4 KAKKPILLPSASEDPSIDNW-DKAS-------WENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSF 63 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~-~~~~-------~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (131)
..++|+++|+||+|+..... ...+ +..++++||+++.| +.++++.+.+.+ +..+.-+
T Consensus 158 ~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~g-v~eL~~~L~~~l--~~~~~~~ 222 (339)
T PRK15494 158 SLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKN-IDGLLEYITSKA--KISPWLY 222 (339)
T ss_pred hcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccC-HHHHHHHHHHhC--CCCCCCC
Confidence 45678999999999864311 1111 13578999999999 999999998877 4444333
No 344
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.91 E-value=0.0003 Score=46.48 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=34.3
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.++|+++|+||+|+...... ...+ ...+++||+.+.| +.+++..+.+.
T Consensus 105 ~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 161 (163)
T cd04176 105 EKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTM-VNELFAEIVRQ 161 (163)
T ss_pred CCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCC-HHHHHHHHHHh
Confidence 57999999999998543211 1111 3457899999999 99888776554
No 345
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.90 E-value=0.00037 Score=45.33 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCccccccccc-cc-CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKA-SW-ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~-~~-~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.++|+++|+||+|+.+...... .. ...+++|+.++.| +.++++.+.+.
T Consensus 106 ~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 155 (157)
T cd04164 106 ADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEG-LDELKEALLEL 155 (157)
T ss_pred cCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCC-HHHHHHHHHHh
Confidence 4799999999999976543321 11 6688999999999 98887766543
No 346
>KOG0090|consensus
Probab=96.89 E-value=0.0012 Score=46.25 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++++|..++|||+|..++..+.+...+. .+. -....+.+ +... +++.|.||.+
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-Sie--pn~a~~r~-gs~~--~~LVD~PGH~ 93 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVT-SIE--PNEATYRL-GSEN--VTLVDLPGHS 93 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeee-eec--cceeeEee-cCcc--eEEEeCCCcH
Confidence 49999999999999999999885543221 111 11222333 2222 7899999963
No 347
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.89 E-value=0.00036 Score=45.93 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=35.3
Q ss_pred CCCcEEeeccCCCcccccccccc---c-----CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKAS---W-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~---~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.+.|+++|.||+|+........+ + -..+++|++++.| +.++++.+.+.
T Consensus 105 ~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~~~~~ 160 (161)
T cd01863 105 NDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDG-VQQAFEELVEK 160 (161)
T ss_pred CCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCC-HHHHHHHHHHh
Confidence 47889999999999743322211 2 4478899999999 99998876553
No 348
>KOG1707|consensus
Probab=96.88 E-value=0.0034 Score=49.73 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=47.1
Q ss_pred CCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeC
Q psy10878 65 APPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127 (131)
Q Consensus 65 ~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt 127 (131)
....+.++|.++|..++|||.+++.|+++.+..++..+....|....+.. .|..-.+.+-|.
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~-~g~~k~LiL~ei 481 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV-KGQQKYLILREI 481 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee-ccccceEEEeec
Confidence 34667889999999999999999999998888777677776776666665 455444555443
No 349
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.88 E-value=0.00032 Score=53.50 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=37.4
Q ss_pred CCCcEEeeccCCCcccccccc---ccc-------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW-------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~-------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+....... .++ ..++++||.++.+ +.++++.+.+.+
T Consensus 274 ~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~G-IdeLl~~I~~~L 332 (390)
T PRK12298 274 AEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLG-VKELCWDLMTFI 332 (390)
T ss_pred cCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcC-HHHHHHHHHHHh
Confidence 368999999999986432111 111 2578999999999 999999888877
No 350
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.87 E-value=0.00037 Score=45.05 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=31.0
Q ss_pred CCcEEeeccCCCcccccccc---ccc------CCCCccccccCCcccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK---ASW------ENVTPIVSEQGDGEIIEIIDPS 50 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~---~~~------~~~~~is~~~~~~~~~~~~~~~ 50 (131)
.+|+++|+||+|+.+..... .++ ..++++|++++.| +.++++.+
T Consensus 88 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l 140 (142)
T TIGR02528 88 VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQG-LEALVDYL 140 (142)
T ss_pred cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCC-HHHHHHHH
Confidence 46999999999996532111 122 2568899999999 88876643
No 351
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.87 E-value=0.00046 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.718 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999998854
No 352
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.86 E-value=0.00087 Score=43.27 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhCc
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~ 94 (131)
|+++||..|+|||+|.+.+.+..
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~ 25 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGND 25 (148)
T ss_pred eeEEecccccCchhHHHHhhcch
Confidence 69999999999999999987653
No 353
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.84 E-value=0.00028 Score=48.91 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=34.7
Q ss_pred CcEEeeccCCCccccccc------ccc--------cCCCCccccccCCcccccccccccccc
Q psy10878 7 KPILLPSASEDPSIDNWD------KAS--------WENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 7 kp~vlv~NK~Dl~~~~~~------~~~--------~~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+|+++|+||+|+...... ..+ ...++++|++++.| +.++++.+.+.+
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~g-i~~L~~~l~~~l 198 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYN-IDVLLEYIVKKI 198 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCC-HHHHHHHHHHhC
Confidence 578999999999653210 111 13468999999999 999999888766
No 354
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.84 E-value=0.00029 Score=47.13 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=36.3
Q ss_pred CCcEEeeccCCCcccccccc--ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK--ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~--~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|+||+|+.+..... ..+ ...+.+||+++.| +.++++.+.+.+
T Consensus 104 ~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 158 (166)
T cd00877 104 NIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYN-FEKPFLWLARKL 158 (166)
T ss_pred CCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCC-hHHHHHHHHHHH
Confidence 79999999999996433111 112 4579999999999 999998877654
No 355
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.84 E-value=0.00031 Score=46.47 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+...... ...+ ..++++||+.+.| +.+++..+.+.+
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~l~~~l 162 (164)
T cd04175 105 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKIN-VNEIFYDLVRQI 162 (164)
T ss_pred CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 46899999999999643211 1112 4578999999999 999988776543
No 356
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=96.83 E-value=8.7e-05 Score=49.68 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=34.0
Q ss_pred cCCCcEEeeccCCCccccccc---cccc-----CCCCccccccCCccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWD---KASW-----ENVTPIVSEQGDGEIIEIIDP 49 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~---~~~~-----~~~~~is~~~~~~~~~~~~~~ 49 (131)
..++|+++|+||+|..+.... ...+ -.++|+||.++.| +.++.+.
T Consensus 103 e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g-~~~L~~~ 155 (156)
T PF02421_consen 103 ELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEG-IDELKDA 155 (156)
T ss_dssp HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBT-HHHHHHH
T ss_pred HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcC-HHHHHhh
Confidence 468999999999998665321 2222 6789999999999 9888764
No 357
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.82 E-value=0.00039 Score=46.14 Aligned_cols=48 Identities=8% Similarity=-0.053 Sum_probs=34.8
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.+.|+++|+||+|+....... ..+ ...+.+|+.++.| +.++++.+.+.
T Consensus 111 ~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~i~~~ 167 (169)
T cd04114 111 NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN-VEKLFLDLACR 167 (169)
T ss_pred CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC-HHHHHHHHHHH
Confidence 468899999999986433211 122 3467999999999 99998877653
No 358
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.82 E-value=0.00028 Score=47.13 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=35.5
Q ss_pred CCCcEEeeccCCCcccccc--------------------ccccc--CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--------------------DKASW--ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--------------------~~~~~--~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|.||+|+..... ....+ ...+++|++++.| +.++++.+.+..
T Consensus 101 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~lf~~l~~~~ 171 (174)
T smart00174 101 PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG-VREVFEEAIRAA 171 (174)
T ss_pred CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC-HHHHHHHHHHHh
Confidence 4799999999999965321 00111 2568899999999 999988776543
No 359
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.00076 Score=48.21 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|.+|||||||++-..+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999987753
No 360
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=96.80 E-value=0.00052 Score=45.06 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=32.3
Q ss_pred CCCcEEeeccCCCcccccc--cccc---cC-------CCCccccccCCccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DKAS---WE-------NVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~~~---~~-------~~~~is~~~~~~~~~~~~~~~~ 51 (131)
.++|+++|+||+|+..... .... +. .++++||+.+.| +.++++.+.
T Consensus 103 ~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g-v~~~~~~l~ 160 (162)
T cd04157 103 RRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEG-LDEGVQWLQ 160 (162)
T ss_pred CCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCc-hHHHHHHHh
Confidence 4799999999999864321 1111 11 257899999999 998877653
No 361
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.00063 Score=50.54 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCcEEeeccCCCccccccccccc--------------CCCCccccccCCcccccccccccccccCC
Q psy10878 6 KKPILLPSASEDPSIDNWDKASW--------------ENVTPIVSEQGDGEIIEIIDPSLKLVRVP 57 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~~~~--------------~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 57 (131)
-|.+++|=||+|++..+.....+ ..++|+||.|+.+ ++-+++.+.++...|
T Consensus 140 ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~N-IDal~e~i~~~IptP 204 (415)
T COG5257 140 IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKAN-IDALIEAIEKYIPTP 204 (415)
T ss_pred cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccC-HHHHHHHHHHhCCCC
Confidence 37799999999998876544333 5679999999999 999999998887444
No 362
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.00081 Score=52.27 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=40.7
Q ss_pred CCCcEEeeccCCCccccc--cccccc--------CCCCccccccCCcccccccccccccccCCC
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKASW--------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPS 58 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~~~--------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~ 58 (131)
.+-.++-|+||+||...+ ....+. .+.+.+||++|.| +.++++.+......|.
T Consensus 127 ~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~g-I~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 127 NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIG-IEDVLEAIVEKIPPPK 189 (603)
T ss_pred cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCC-HHHHHHHHHhhCCCCC
Confidence 467789999999995432 222222 7788999999999 9999999999885443
No 363
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.77 E-value=0.00033 Score=47.14 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+.+.... ...+ ...+.+||+++.| +.++++.+.+.+
T Consensus 106 ~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 163 (172)
T cd04141 106 EDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHY-IDDAFHGLVREI 163 (172)
T ss_pred CCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 47899999999998543211 1112 3467899999999 999998876554
No 364
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=96.76 E-value=0.00024 Score=48.25 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=35.3
Q ss_pred CCCcEEeeccCCCccccc--cccc------cc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKA------SW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~------~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.... .... .+ ..++++||+++.| +.++++.+.+.+
T Consensus 108 ~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g-i~~l~~~l~~~l 169 (183)
T cd04152 108 QGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEG-LQEGLEKLYEMI 169 (183)
T ss_pred CCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCC-HHHHHHHHHHHH
Confidence 579999999999985321 1111 11 1357899999999 999998877655
No 365
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.76 E-value=0.00038 Score=45.85 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=35.0
Q ss_pred CCCcEEeeccCCCcccccc-cc---ccc-----CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW-DK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~-~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.+.|+++|+||+|+.+... .. ..+ ...+.+|++++.| +.++++.+.+.
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~ 165 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEG-VNEMFQTLFSS 165 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCC-HHHHHHHHHHH
Confidence 4689999999999963211 11 112 4578999999999 99998877654
No 366
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.75 E-value=0.00039 Score=46.14 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=31.2
Q ss_pred CCcEEeeccCCCccccc---cccccc---------CCCCccccccCCccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDN---WDKASW---------ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~---~~~~~~---------~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
++|++|+.||+|+.... +....+ ..++++||++|.| +.++++.+.
T Consensus 101 ~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g-v~~~~~~l~ 157 (159)
T cd04150 101 DAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG-LYEGLDWLS 157 (159)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC-HHHHHHHHh
Confidence 58999999999985431 111222 1245799999999 988877553
No 367
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=96.75 E-value=0.00035 Score=52.17 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCcccccc---ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+..... ...++ ..++++||.++.| +.++++.+.+.+
T Consensus 272 ~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G-I~eL~~~I~~~l 328 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG-LDELLYALAELL 328 (329)
T ss_pred ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC-HHHHHHHHHHHh
Confidence 4799999999999865421 11112 3578999999999 999988766543
No 368
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.75 E-value=0.00042 Score=46.06 Aligned_cols=49 Identities=4% Similarity=0.062 Sum_probs=35.6
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+.+..... ..+ ...+++|++.+.| +.++++.+.+.+
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (165)
T cd01865 105 DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENIN-VKQVFERLVDII 162 (165)
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 368999999999996543211 111 3578999999999 999988776543
No 369
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.75 E-value=0.00041 Score=45.90 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=34.4
Q ss_pred CCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
+.|+++|+||+|+....... ..+ ...+++||..+.| +.++++.+.+.
T Consensus 108 ~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 163 (165)
T cd01868 108 NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTN-VEEAFKQLLTE 163 (165)
T ss_pred CCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCC-HHHHHHHHHHH
Confidence 58999999999986532111 111 3478999999999 99998876653
No 370
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.75 E-value=0.00056 Score=45.50 Aligned_cols=47 Identities=6% Similarity=0.186 Sum_probs=33.9
Q ss_pred CCCcEEeeccCCCccccccc---cccc------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD---KASW------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~---~~~~------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.+.|+++|+||+|+...... ..++ ...+++|++++.| +.++++.+.+
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~~~~~~~ 168 (170)
T cd04116 113 ESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATN-VAAAFEEAVR 168 (170)
T ss_pred CCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCC-HHHHHHHHHh
Confidence 46799999999998643211 1122 3568999999999 9888877654
No 371
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=96.74 E-value=0.00087 Score=44.01 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCCcEEeeccCCCcccc---cccc-----cccC-----CCCccccccCCccccccccccc
Q psy10878 5 AKKPILLPSASEDPSID---NWDK-----ASWE-----NVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~---~~~~-----~~~~-----~~~~is~~~~~~~~~~~~~~~~ 51 (131)
.+.|+++|+||+|+... .... ..+. +++++||+++.| +.++++.+.
T Consensus 100 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~~~~~i~ 158 (160)
T cd04156 100 KGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG-LAEAFRKLA 158 (160)
T ss_pred cCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCC-hHHHHHHHh
Confidence 47899999999998532 1111 1121 367899999999 998877654
No 372
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=96.74 E-value=0.00056 Score=47.33 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=35.9
Q ss_pred CCCcEEeeccCCCccccccc----cc-----cc-CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KA-----SW-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~-----~~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+...... .. .+ ...+++||+++.| +.++++.+.+..
T Consensus 115 ~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~-v~~lf~~i~~~~ 173 (198)
T cd04142 115 KEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWH-ILLLFKELLISA 173 (198)
T ss_pred CCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCC-HHHHHHHHHHHh
Confidence 56899999999999543211 11 11 3458999999999 999998877654
No 373
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.73 E-value=0.00062 Score=44.91 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=35.2
Q ss_pred ccCCCcEEeeccCCCcccccccc---ccc------CCCCccccccCCcccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNWDK---ASW------ENVTPIVSEQGDGEIIEIIDPS 50 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~~---~~~------~~~~~is~~~~~~~~~~~~~~~ 50 (131)
.-.++|++=|++|+|+...+... .+| .++|.+|+.++.| +.+|.+.+
T Consensus 86 ~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eG-i~eL~~~L 141 (143)
T PF10662_consen 86 SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEG-IEELKDYL 141 (143)
T ss_pred cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcC-HHHHHHHH
Confidence 34689999999999998332222 122 8899999999999 98886643
No 374
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.72 E-value=0.00063 Score=46.50 Aligned_cols=49 Identities=12% Similarity=-0.003 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+...... ...+ ...+++|+..+.| +.+++..+.+.+
T Consensus 105 ~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~-v~~l~~~l~~~~ 162 (191)
T cd04112 105 EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLN-VELAFTAVAKEL 162 (191)
T ss_pred CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 36799999999999643211 1111 3568999999999 999999887665
No 375
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.72 E-value=0.0004 Score=46.57 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=31.8
Q ss_pred CCCcEEeeccCCCccccc--cccccc----------CCCCccccccCCccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKASW----------ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~~~----------~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
.++|++||.||+|+.+.. ....++ ..++++||+++.| +.++++.+.
T Consensus 109 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~g-v~~~~~~l~ 166 (168)
T cd04149 109 RDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG-LYEGLTWLS 166 (168)
T ss_pred cCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCC-hHHHHHHHh
Confidence 358999999999985421 111111 1357899999999 988877553
No 376
>PRK06217 hypothetical protein; Validated
Probab=96.70 E-value=0.0013 Score=44.86 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+|+|+|.+|+||||+..++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 377
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.69 E-value=0.00053 Score=46.84 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=36.3
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+...... ..++ ...+++||+++.| +.+++..+.+.+
T Consensus 105 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~-v~~l~~~l~~~l 162 (190)
T cd04144 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN-VERAFYTLVRAL 162 (190)
T ss_pred CCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 46899999999999542211 1112 3478999999999 999998887655
No 378
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.69 E-value=0.0011 Score=42.95 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=18.2
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
++++|++|+|||+|+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999998773
No 379
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.69 E-value=0.00057 Score=47.08 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCcccccc----ccccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW----DKASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~----~~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|++||.||+|+.+... ...++ ...+++|++++.| +.++++.+.+.+
T Consensus 109 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~-v~e~f~~l~~~l 167 (201)
T cd04107 109 EPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGIN-IEEAMRFLVKNI 167 (201)
T ss_pred CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 5689999999999963211 11122 3578999999999 999998887655
No 380
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.68 E-value=0.0012 Score=41.79 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=18.1
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
+++.|++|+|||+++..++.
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999998874
No 381
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.66 E-value=0.00054 Score=45.47 Aligned_cols=48 Identities=6% Similarity=0.090 Sum_probs=35.4
Q ss_pred CCcEEeeccCCCcccccc-cc---ccc------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW-DK---ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~-~~---~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+..+.. .. ..+ ..++++|+..+.| +.++++.+.+.+
T Consensus 109 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 166 (172)
T cd01862 109 NFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAIN-VEQAFETIARKA 166 (172)
T ss_pred CceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCC-HHHHHHHHHHHH
Confidence 789999999999973211 11 111 3678999999999 999988776554
No 382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.66 E-value=0.0015 Score=41.12 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
.++++|++|+|||+++..++..-.
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC
Confidence 589999999999999999886433
No 383
>KOG1489|consensus
Probab=96.66 E-value=0.00046 Score=51.00 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=34.8
Q ss_pred CCCcEEeeccCCCcccccccc-ccc------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK-ASW------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~-~~~------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
..+|.++|+||+|+.+.+... .++ ..++|+||+.+.+ +..+++.+..
T Consensus 311 ~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~eg-l~~ll~~lr~ 364 (366)
T KOG1489|consen 311 ADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEG-LEELLNGLRE 364 (366)
T ss_pred ccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccc-hHHHHHHHhh
Confidence 578999999999996544332 333 3379999999999 8887765443
No 384
>PTZ00099 rab6; Provisional
Probab=96.64 E-value=0.00067 Score=46.11 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=35.6
Q ss_pred CCCcEEeeccCCCcccccc-c---ccc----c-CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW-D---KAS----W-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~-~---~~~----~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|++||.||+|+.+... . ... + ...+++||+.+.| +.++++.+.+.+
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~n-V~~lf~~l~~~l 141 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN-IKVLFKKIAAKL 141 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3578899999999964211 1 111 1 2356899999999 999999888776
No 385
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.64 E-value=0.0016 Score=37.42 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=18.5
Q ss_pred EEEEcCCCCCchhhhhhhhhC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~ 93 (131)
+++.|.+|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988753
No 386
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=96.64 E-value=0.00039 Score=54.56 Aligned_cols=49 Identities=18% Similarity=0.100 Sum_probs=36.5
Q ss_pred CCCcEEeeccCCCcccccccc----ccc----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ..++++|+.++.| +.+++..+.+.+
T Consensus 283 ~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeG-LdEL~~~L~ell 339 (500)
T PRK12296 283 AERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREG-LRELSFALAELV 339 (500)
T ss_pred cCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 479999999999996543211 111 3579999999999 999988776554
No 387
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.61 E-value=0.00047 Score=46.51 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=33.4
Q ss_pred CCcEEeeccCCCccccc--ccc-ccc--C-------CCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDN--WDK-ASW--E-------NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~--~~~-~~~--~-------~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|.||+|+.+.. ... ..+ . .++++||++|.| +.++++.+.+.+
T Consensus 114 ~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 173 (175)
T smart00177 114 DAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDG-LYEGLTWLSNNL 173 (175)
T ss_pred CCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 57999999999986431 111 111 1 245799999999 999988776543
No 388
>PRK03839 putative kinase; Provisional
Probab=96.60 E-value=0.0015 Score=44.20 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.||+||||+..++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988764
No 389
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.60 E-value=0.00058 Score=48.01 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccccC
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRV 56 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~ 56 (131)
.++|+++|.||+|+....... ..+ ...+++|+..+.| +.++++.+.+.+..
T Consensus 105 ~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~g-v~~l~~~l~~~~~~ 164 (221)
T cd04148 105 EDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN-VDELLEGIVRQIRL 164 (221)
T ss_pred CCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCC-HHHHHHHHHHHHHh
Confidence 468999999999996543111 111 3468899999999 99999988777643
No 390
>KOG0705|consensus
Probab=96.59 E-value=0.002 Score=50.90 Aligned_cols=58 Identities=33% Similarity=0.449 Sum_probs=45.3
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
.++|+-+||..+.|||+|++||+.+.+..... +.+..| .+.+.. ++....+-+.|-+|
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~-kkE~vv-~gqs~lLlirdeg~ 86 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRF-KKEVVV-DGQSHLLLIRDEGG 86 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccC-CcCccc-eeeEEe-eccceEeeeecccC
Confidence 46799999999999999999999998876543 445566 445544 78878888888766
No 391
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.58 E-value=0.0048 Score=48.23 Aligned_cols=56 Identities=29% Similarity=0.518 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecC-CeEEEEEEEeCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRD-QQKIKLQLWDIAG 129 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~l~i~Dt~G 129 (131)
-.|+|+|+.++|||||+.+|.+. +.+.++.+.+|..-.+.-.+ ....++.+|-..|
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g 82 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDG 82 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCC
Confidence 36999999999999999998653 34557888888665553211 1235678887655
No 392
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.58 E-value=0.0013 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
-.+++.|++|+|||+|++++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998764
No 393
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.57 E-value=0.0016 Score=44.00 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|.+|+||||+++.++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998765
No 394
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.56 E-value=0.00068 Score=51.04 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=33.9
Q ss_pred CCCcEEeeccCCCccccccccc---ccCCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKA---SWENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~---~~~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+.+...... .+..++++|++++.| +.++++.+.+
T Consensus 300 ~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~G-I~eL~~~I~~ 349 (351)
T TIGR03156 300 EDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEG-LDLLLEAIAE 349 (351)
T ss_pred CCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCC-HHHHHHHHHh
Confidence 3789999999999965332111 113468999999999 9988776544
No 395
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.56 E-value=0.00066 Score=46.44 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=37.0
Q ss_pred CCCcEEeeccCCCccccccc---c----c---------cc--CCCCccccccCCcccccccccccccccC
Q psy10878 5 AKKPILLPSASEDPSIDNWD---K----A---------SW--ENVTPIVSEQGDGEIIEIIDPSLKLVRV 56 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~---~----~---------~~--~~~~~is~~~~~~~~~~~~~~~~~~~~~ 56 (131)
.++|+++|+||+|+...... . . .+ ..++++|+.++.| +.++++.+.....+
T Consensus 119 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~g-i~~L~~~l~~~~~~ 187 (192)
T cd01889 119 LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGG-EAELGKDLNNLIVL 187 (192)
T ss_pred cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCC-HHHHHHHHHhcccc
Confidence 46899999999998632110 0 0 01 3468999999999 99999888777644
No 396
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.54 E-value=0.00065 Score=45.66 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCcccccc-cc-------ccc-CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW-DK-------ASW-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~-~~-------~~~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+..... .. ..+ ..++++|+.++.| +.+++..+.+.+
T Consensus 105 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (180)
T cd04137 105 ESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENEN-VEEAFELLIEEI 162 (180)
T ss_pred CCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4689999999999864321 11 112 4578999999999 999998887665
No 397
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.54 E-value=0.0016 Score=41.06 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.3
Q ss_pred EEEEcCCCCCchhhhhhhhhC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~ 93 (131)
|++.|.+|+||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999987743
No 398
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.52 E-value=0.0012 Score=44.33 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=36.3
Q ss_pred CCCcEEeeccCCCcccccc-------ccc------------------ccCCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW-------DKA------------------SWENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~-------~~~------------------~~~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+..... ... ....++++|++++.| +.++++.+...+
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~g-i~~l~~~l~~~l 186 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIG-VEELLEAIVEHL 186 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcC-HHHHHHHHHhhC
Confidence 5799999999999864211 000 114568999999999 999988877765
No 399
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.52 E-value=0.0016 Score=41.40 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-+++.|.+|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.52 E-value=0.0017 Score=41.74 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|..|+|||||++.+++.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5899999999999999987753
No 401
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.51 E-value=0.0057 Score=50.29 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..+|+++|..++|||||+.+++.
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~ 42 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLA 42 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHH
Confidence 44799999999999999999874
No 402
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.51 E-value=0.0019 Score=42.15 Aligned_cols=20 Identities=25% Similarity=0.685 Sum_probs=18.3
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
++++|.+|+|||||++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999875
No 403
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.51 E-value=0.00093 Score=44.07 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=34.1
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.+.|+++|+||+|+....... ..+ ...+.+|+.++.| +.++++.+.+.
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~ 162 (164)
T cd04101 106 KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVG-YEEPFESLARA 162 (164)
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC-hHHHHHHHHHH
Confidence 368999999999995442111 111 3458999999999 99888766543
No 404
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.49 E-value=0.00087 Score=44.06 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=32.7
Q ss_pred CCCcEEeeccCCCcccccc----ccccc-----CCCCccccccCCccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW----DKASW-----ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~----~~~~~-----~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
.+.|+++|+||+|+..... ....+ ...+++|++++.| +.++++.+.
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~ 159 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN-VTELFEYLA 159 (162)
T ss_pred CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCC-HHHHHHHHH
Confidence 4789999999999854321 11112 3568899999999 888876553
No 405
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0094 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++++|...+|||||+-|++.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly 29 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLY 29 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHH
Confidence 3467999999999999999988773
No 406
>PF05729 NACHT: NACHT domain
Probab=96.48 E-value=0.0021 Score=42.28 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=18.3
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
+++.|++|+|||+++.+++.
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 78999999999999998874
No 407
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.47 E-value=0.00084 Score=46.84 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=34.8
Q ss_pred CCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|.||+|+.+..... ..+ ...+.+||+++.| +.++++.+.+.+
T Consensus 109 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~g-v~~lf~~l~~~l 165 (215)
T cd04109 109 QPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDR-VNLLFQQLAAEL 165 (215)
T ss_pred CceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 45789999999996432111 112 3468899999999 999998887665
No 408
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.47 E-value=0.0021 Score=43.89 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|.+|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999998643
No 409
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.46 E-value=0.0044 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEcCCCCCchhhhhhhhhC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~ 93 (131)
+-+||.||+|||||++.+..-
T Consensus 162 VGLVG~PNaGKSTlls~vS~A 182 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAA 182 (369)
T ss_pred cccccCCCCcHHHHHHHHhhc
Confidence 568999999999999998853
No 410
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.46 E-value=0.0026 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...-++++|.+|+|||||++.+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 344688999999999999999874
No 411
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=96.46 E-value=0.00096 Score=43.78 Aligned_cols=47 Identities=21% Similarity=0.168 Sum_probs=33.3
Q ss_pred CCCcEEeeccCCCccccc---cccccc---------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN---WDKASW---------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~---~~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.+.|+++|+||+|+.... +..... ..++++|++.+.| +.++++.+..
T Consensus 99 ~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~~~~~l~~ 157 (158)
T cd00878 99 KGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG-LDEGLDWLLQ 157 (158)
T ss_pred CCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC-HHHHHHHHhh
Confidence 478999999999986532 111111 3478899999999 9888776543
No 412
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.45 E-value=0.001 Score=44.60 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCCcEEeeccCCCccccc--cccccc----------CCCCccccccCCccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKASW----------ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~~~----------~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
.++|+++|+||+|+.... .....+ ...+++||+++.| +.++++.+.
T Consensus 114 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~ 171 (173)
T cd04154 114 AGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEG-LLQGIDWLV 171 (173)
T ss_pred cCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcC-HHHHHHHHh
Confidence 578999999999986431 111111 2478999999999 888876553
No 413
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.45 E-value=0.00066 Score=44.54 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=31.1
Q ss_pred CcEEeeccCCCcccccc------cc-ccc-------CCCCccccccCCccccccccccc
Q psy10878 7 KPILLPSASEDPSIDNW------DK-ASW-------ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 7 kp~vlv~NK~Dl~~~~~------~~-~~~-------~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
+|+++|+||+|+..... .. ..+ ...+++|++++.| +.++++.+.
T Consensus 105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~ 162 (164)
T cd04171 105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG-IEELKEYLD 162 (164)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC-HHHHHHHHh
Confidence 59999999999964310 11 111 4578999999999 888876543
No 414
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.45 E-value=0.0026 Score=45.08 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|++|+|||||+|-+.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999997654
No 415
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.44 E-value=0.00089 Score=44.30 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=32.0
Q ss_pred CCCcEEeeccCCCcccccc--ccccc------------CCCCccccccCCcccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DKASW------------ENVTPIVSEQGDGEIIEIIDPS 50 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~~~~------------~~~~~is~~~~~~~~~~~~~~~ 50 (131)
.+.|+++++||+|+..... ....+ ..++++||+++.| +.++++.+
T Consensus 106 ~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l 164 (167)
T cd04160 106 EGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG-VREGIEWL 164 (167)
T ss_pred cCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC-HHHHHHHH
Confidence 4789999999999854311 11111 2478999999999 88887654
No 416
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=96.43 E-value=0.00084 Score=44.72 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCcccccc-ccccc-------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW-DKASW-------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~-~~~~~-------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++++||+|+...+. ...++ ..++++|++++.| +.++++.+.+..
T Consensus 90 ~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~g-i~~l~~~l~~~~ 146 (158)
T PRK15467 90 VSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQS-VQQLVDYLASLT 146 (158)
T ss_pred CCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccC-HHHHHHHHHHhc
Confidence 3689999999999854321 11122 2678899999999 999988876665
No 417
>PRK13695 putative NTPase; Provisional
Probab=96.43 E-value=0.0024 Score=43.14 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++.|.+|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 418
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.41 E-value=0.0024 Score=40.60 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-+++.|++|+|||++++.+...
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999988754
No 419
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.41 E-value=0.00058 Score=45.26 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=34.9
Q ss_pred CCcEEeeccCCCcccccc-ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW-DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~-~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+..... ....+ ...+++||+++.| +.++++.+.+..
T Consensus 104 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 157 (161)
T cd04124 104 EIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTN-VVKLFQDAIKLA 157 (161)
T ss_pred CCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 689999999999853211 11112 3468999999999 999988776544
No 420
>PRK14532 adenylate kinase; Provisional
Probab=96.41 E-value=0.0024 Score=43.52 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+++++|.||+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 421
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.39 E-value=0.001 Score=43.62 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=33.3
Q ss_pred CCcEEeeccCCCcccccc-ccccc--------CCCCccccccCCcccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW-DKASW--------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~-~~~~~--------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
+.|+++|+||+|+..... ...+. ..++++|+..+.| +.++++.+.+
T Consensus 105 ~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~i~~ 159 (161)
T cd01861 105 DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHN-VKELFRKIAS 159 (161)
T ss_pred CCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCC-HHHHHHHHHH
Confidence 589999999999943321 11111 4478899999999 9988877654
No 422
>PRK14530 adenylate kinase; Provisional
Probab=96.38 E-value=0.0025 Score=44.52 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~ 91 (131)
+|+++|.||+||||+..+++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999886
No 423
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.37 E-value=0.001 Score=43.39 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=33.4
Q ss_pred CCCcEEeeccCCCccccccccccc----------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW----------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~----------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.+.|+++|+||+|+........++ .+++++|+..+.+ +.++++.+.+
T Consensus 110 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~l~~~l~~ 166 (168)
T cd04163 110 SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN-VDELLEEIVK 166 (168)
T ss_pred hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC-hHHHHHHHHh
Confidence 468999999999997322111111 5678899999999 8888776544
No 424
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.36 E-value=0.0024 Score=43.10 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|.+|+|||||++.++.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999875
No 425
>KOG2486|consensus
Probab=96.36 E-value=0.0069 Score=44.21 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=36.8
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCC-CccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKK-DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
.....+++.|.+|||||+|+|.+..-.... ...++.|.......+.+ +. .+.+.|.+|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-~~---~~~~vDlPG 192 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-GK---SWYEVDLPG 192 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-cc---eEEEEecCC
Confidence 445679999999999999999888543322 22234443333334433 22 356788888
No 426
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.36 E-value=0.001 Score=44.65 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=34.8
Q ss_pred CCCcEEeeccCCCcccccc----ccccc-----CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW----DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~----~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.+.|+++|.||+|+.+... ...++ ...+++||+.+.| +.++++.+.+.
T Consensus 119 ~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~-v~~l~~~l~~~ 175 (180)
T cd04127 119 ENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTN-VEKAVERLLDL 175 (180)
T ss_pred CCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHH
Confidence 3678999999999965321 11222 3568999999999 99998877653
No 427
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.36 E-value=0.001 Score=51.69 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=37.9
Q ss_pred CCCcEEeeccCCCccccccccccc-CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+........ ..++++|++++.| +.++++.+.+.+
T Consensus 320 ~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~G-I~~L~~~L~~~l 369 (449)
T PRK05291 320 KDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEG-IDELREAIKELA 369 (449)
T ss_pred CCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCC-HHHHHHHHHHHH
Confidence 478999999999996543221111 5678999999999 999999887765
No 428
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.35 E-value=0.0013 Score=51.30 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=35.0
Q ss_pred CcEEeeccCCCcccccccc------cc--------cCCCCccccccCCccccccccccccccc
Q psy10878 7 KPILLPSASEDPSIDNWDK------AS--------WENVTPIVSEQGDGEIIEIIDPSLKLVR 55 (131)
Q Consensus 7 kp~vlv~NK~Dl~~~~~~~------~~--------~~~~~~is~~~~~~~~~~~~~~~~~~~~ 55 (131)
+++++|+||+|+.+.++.. .+ ...++|+|+.++.| +..|++.+.+.+.
T Consensus 172 ~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~n-I~~Ll~~L~~~lp 233 (460)
T PTZ00327 172 KHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYN-IDVVLEYICTQIP 233 (460)
T ss_pred CcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCC-HHHHHHHHHhhCC
Confidence 5688999999997532211 11 14579999999999 9999988876553
No 429
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.0024 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|.+|||||||+|-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 489999999999999997664
No 430
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.35 E-value=0.003 Score=43.84 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
+++.++|.+|+|||||+++++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 431
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.35 E-value=0.0011 Score=42.85 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=32.8
Q ss_pred CCCcEEeeccCCCccccccc---cccc---------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD---KASW---------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~---~~~~---------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+...... ...+ ...+++|++++.| +.++++.+.+
T Consensus 100 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~ 158 (159)
T cd04159 100 EGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTN-IDIVLDWLIK 158 (159)
T ss_pred cCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCC-hHHHHHHHhh
Confidence 47899999999998653211 1111 2357899999999 9888776543
No 432
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.35 E-value=0.0011 Score=43.31 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=34.1
Q ss_pred CCcEEeeccCCCcccccc-cc---ccc-----CCCCccccccCCccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW-DK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~-~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
++|+++|+||+|+..... .. .++ ...+++|+.++.| +.++++.+.+.
T Consensus 105 ~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g-i~~~~~~l~~~ 160 (162)
T cd04123 105 NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKG-IEELFLSLAKR 160 (162)
T ss_pred CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHH
Confidence 689999999999864321 11 111 4468999999999 99988876543
No 433
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.003 Score=47.30 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEcCCCCCchhhhhhhhhCc
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~~ 94 (131)
++++|++||||||+++-+++-+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999887643
No 434
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.33 E-value=0.0012 Score=43.44 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=34.5
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.+.|+++|.||+|+.+.... ...+ -..+.+|++++.| +.++++.+.+
T Consensus 104 ~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~~~~ 159 (161)
T cd04113 104 PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGEN-VEEAFLKCAR 159 (161)
T ss_pred CCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCC-HHHHHHHHHH
Confidence 47899999999999653211 1111 4678999999999 9998877654
No 435
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.33 E-value=0.0011 Score=44.51 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=31.6
Q ss_pred CCcEEeeccCCCcccc---ccccccc---------CCCCccccccCCccccccccccc
Q psy10878 6 KKPILLPSASEDPSID---NWDKASW---------ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~---~~~~~~~---------~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
++|+++++||+|+... +.....+ -.++++||.++.| +.++++.+.
T Consensus 116 ~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g-i~e~~~~l~ 172 (174)
T cd04153 116 KAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG-LPEGLDWIA 172 (174)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC-HHHHHHHHh
Confidence 5899999999998542 1111111 1368999999999 988876553
No 436
>KOG0410|consensus
Probab=96.33 E-value=0.0036 Score=46.67 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-|.+||..|+|||||++.+..
T Consensus 180 viavVGYTNaGKsTLikaLT~ 200 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTK 200 (410)
T ss_pred eEEEEeecCccHHHHHHHHHh
Confidence 589999999999999999874
No 437
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.32 E-value=0.0011 Score=44.30 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=33.6
Q ss_pred CCCcEEeeccCCCcccccccc----------------c----c--cCCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----------------A----S--WENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----------------~----~--~~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|.||+|+.+..... . . +..++++||+.+.| +.++++.+.+
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~ 172 (175)
T cd01870 104 PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEG-VREVFEMATR 172 (175)
T ss_pred CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcC-HHHHHHHHHH
Confidence 478999999999986432110 0 0 12568899999999 9998877654
No 438
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0028 Score=43.03 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCchhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~ 91 (131)
++|++.|.|||||||+..++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 379999999999999999877
No 439
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.31 E-value=0.00094 Score=44.24 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCCcEEeeccCCCcccccccc---------------ccc------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---------------ASW------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---------------~~~------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+.+..... ..+ ...+.+|++++.| +.++++.+.+
T Consensus 103 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~i~~ 170 (171)
T cd00157 103 PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG-VKEVFEEAIR 170 (171)
T ss_pred CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC-HHHHHHHHhh
Confidence 369999999999986544211 011 3678999999999 9998876543
No 440
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.31 E-value=0.0012 Score=43.41 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=35.7
Q ss_pred CCCcEEeeccCCCccccc-cccc---cc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN-WDKA---SW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~-~~~~---~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++++||+|+.... .... .+ ..++++|+.++.| +.++++.+.+.+
T Consensus 105 ~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd01860 105 PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGEN-VNELFTEIAKKL 162 (163)
T ss_pred CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCC-HHHHHHHHHHHh
Confidence 457899999999986322 1111 11 4578999999999 999998877653
No 441
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.31 E-value=0.0011 Score=44.06 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=33.4
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.+.|+++|.||+|+....... .++ ...+.+||+.+.| +.+++..+..
T Consensus 106 ~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-i~e~f~~l~~ 161 (166)
T cd04122 106 PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGEN-VEDAFLETAK 161 (166)
T ss_pred CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCC-HHHHHHHHHH
Confidence 357899999999996543211 112 3467899999999 9888766543
No 442
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.31 E-value=0.0033 Score=35.52 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-.++.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999987653
No 443
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.30 E-value=0.0015 Score=44.49 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=35.3
Q ss_pred CCcEEeeccCCCcccccc---c-----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW---D-----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~---~-----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|.||+|+.+... . ...+ ...+++|++++.| +.++++.+.+.+
T Consensus 105 ~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 165 (193)
T cd04118 105 HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQN-VDELFQKVAEDF 165 (193)
T ss_pred CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 689999999999854321 0 1112 3468999999999 999998887655
No 444
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.30 E-value=0.0041 Score=43.18 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...-+.++|.+|+|||||++.+.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998874
No 445
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.29 E-value=0.0014 Score=43.21 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=32.7
Q ss_pred CCCcEEeeccCCCccccc-ccc--------ccc-----CCCCccccccCCccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN-WDK--------ASW-----ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~-~~~--------~~~-----~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
.++|+++++||+|+.... ... ..+ ...+++|++++.| +.++++.+.
T Consensus 112 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~ 171 (174)
T cd01895 112 EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQG-VDKLFDAID 171 (174)
T ss_pred cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCC-HHHHHHHHH
Confidence 579999999999986541 111 111 4578899999999 888766543
No 446
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.29 E-value=0.0013 Score=45.75 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=34.9
Q ss_pred CCCcEEeeccCCCcccccccc----ccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+.+..... .++ ...+.+||+.+.| +.+++..+.+.+
T Consensus 104 ~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~g-V~e~F~~l~~~~ 162 (202)
T cd04120 104 EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFN-VDEIFLKLVDDI 162 (202)
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 468999999999996432111 112 2357899999999 999988776544
No 447
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.29 E-value=0.0017 Score=42.29 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=34.3
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+...... ...+ ...+++|+..+.| +.++++.+.+
T Consensus 103 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~-i~~l~~~l~~ 158 (160)
T cd00876 103 EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNIN-IDEVFKLLVR 158 (160)
T ss_pred CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCC-HHHHHHHHHh
Confidence 47999999999998753211 1111 3678999999999 9988876654
No 448
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.29 E-value=0.0029 Score=42.85 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~ 91 (131)
.++++|.+|+||||++.++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999998887
No 449
>PHA00729 NTP-binding motif containing protein
Probab=96.28 E-value=0.0036 Score=44.39 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++.|.||+|||+|+.+++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998774
No 450
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.27 E-value=0.00064 Score=44.90 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=36.2
Q ss_pred ccCCCcEEeeccCCCcccccc-----ccc--------cc---CCCCccccccCCcccccccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNW-----DKA--------SW---ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~-----~~~--------~~---~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+..++|+++|+||+|+..... ... .+ ..++++|+..+.| +.++++.+.++.
T Consensus 99 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 165 (168)
T cd01887 99 KAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG-IDDLLEAILLLA 165 (168)
T ss_pred HHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCC-HHHHHHHHHHhh
Confidence 346899999999999864311 000 11 3568999999999 999988776553
No 451
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.27 E-value=0.0014 Score=43.63 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCcccccccc--------ccc--CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK--------ASW--ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~--------~~~--~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|++++.||.|+....... ..+ ...+++||+.+.| +.++++.+.+.+
T Consensus 105 ~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~-i~~~f~~i~~~~ 163 (168)
T cd04177 105 DNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN-VDEVFIDLVRQI 163 (168)
T ss_pred CCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999986533111 112 3478999999999 999988877654
No 452
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.27 E-value=0.0013 Score=43.82 Aligned_cols=49 Identities=8% Similarity=-0.090 Sum_probs=35.7
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+.+..... ..+ ...+++|+..+.| +.+++..+.+.+
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~ 164 (167)
T cd01867 107 EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANIN-VEEAFFTLAKDI 164 (167)
T ss_pred CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 467999999999997532111 111 4468999999999 999988776654
No 453
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.26 E-value=0.001 Score=42.73 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=35.0
Q ss_pred cCCCcEEeeccCCCccccccccc-------cc-----CCCCccccccCCcccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWDKA-------SW-----ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~~-------~~-----~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
..++|+++|+||+|+........ .. ..++++|+.++.| +.++++.+..
T Consensus 102 ~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~-v~~l~~~l~~ 161 (163)
T cd00880 102 ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG-IDELREALIE 161 (163)
T ss_pred hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC-HHHHHHHHHh
Confidence 45899999999999865432211 11 6678899999999 8888776654
No 454
>PTZ00369 Ras-like protein; Provisional
Probab=96.26 E-value=0.0012 Score=45.07 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=35.4
Q ss_pred CCCcEEeeccCCCcccccc-c---cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW-D---KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~-~---~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+..... . ...+ ...+.+||.++.| +.++++.+.+.+
T Consensus 109 ~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~g-i~~~~~~l~~~l 166 (189)
T PTZ00369 109 DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVN-VDEAFYELVREI 166 (189)
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 3679999999999854321 1 1112 3468999999999 999888776554
No 455
>COG2262 HflX GTPases [General function prediction only]
Probab=96.26 E-value=0.0018 Score=49.32 Aligned_cols=49 Identities=22% Similarity=0.210 Sum_probs=37.8
Q ss_pred CCCcEEeeccCCCccccccccccc----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..+|+++|+||+|+..+....... ..++++||.++.| +..+.+.+...+
T Consensus 303 ~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~g-l~~L~~~i~~~l 355 (411)
T COG2262 303 DEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEG-LDLLRERIIELL 355 (411)
T ss_pred CCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcC-HHHHHHHHHHHh
Confidence 468999999999986655422222 3589999999999 988888877766
No 456
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.25 E-value=0.0015 Score=43.73 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=33.7
Q ss_pred CCcEEeeccCCCccccc--cccccc--------C---CCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDN--WDKASW--------E---NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~--~~~~~~--------~---~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|.||+|+.+.. ....++ . ..+++||+++.| +.++++.+.+.+
T Consensus 100 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~~f~~l~~~~ 160 (169)
T cd04158 100 DALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG-LYEGLDWLSRQL 160 (169)
T ss_pred CCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC-HHHHHHHHHHHH
Confidence 58999999999996431 111111 1 245679999999 999998887654
No 457
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.23 E-value=0.0016 Score=43.16 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=33.6
Q ss_pred CCCcEEeeccCCCccccccc----ccc----c-CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KAS----W-ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~----~-~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.+.|+++|.||.|+.+.... ... + ...+++||+++.| +.+++..+.+
T Consensus 104 ~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~ 159 (161)
T cd04117 104 EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSN-IKESFTRLTE 159 (161)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHh
Confidence 36799999999998543211 111 1 4568999999999 9988876654
No 458
>PRK00625 shikimate kinase; Provisional
Probab=96.23 E-value=0.0035 Score=42.63 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.+|+||||+...+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999987764
No 459
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.23 E-value=0.0027 Score=51.08 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=50.5
Q ss_pred CCCcEEeeccCCCcccccc--ccccc--------CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEE
Q psy10878 5 AKKPILLPSASEDPSIDNW--DKASW--------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVI 74 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~~~~--------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 74 (131)
.+.|+++|+||+|+..... ...++ .+++++||.++.| +.++++.+...+..|..... .......+++.
T Consensus 125 ~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~G-I~~Ll~~I~~~lp~P~~~~~-~pl~~~Vfd~~ 202 (600)
T PRK05433 125 NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIG-IEEVLEAIVERIPPPKGDPD-APLKALIFDSW 202 (600)
T ss_pred CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCC-HHHHHHHHHHhCccccCCCC-CCceEEEEEEE
Confidence 5789999999999854321 11111 2478999999999 99999999887733321110 01112233443
Q ss_pred EEcCCCCCchhhhhhh
Q psy10878 75 VIGDPTVGKTSFVQRY 90 (131)
Q Consensus 75 vvG~~~vGKSsli~~~ 90 (131)
. +++.|+-++..-+
T Consensus 203 ~--d~~~G~v~~~rV~ 216 (600)
T PRK05433 203 Y--DNYRGVVVLVRVV 216 (600)
T ss_pred e--cCCCceEEEEEEE
Confidence 3 4677877655433
No 460
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.21 E-value=0.0012 Score=46.97 Aligned_cols=48 Identities=17% Similarity=0.007 Sum_probs=36.8
Q ss_pred CCCcEEeeccCCCccccccccccc---CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW---ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~---~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.-+|+++|+||+|+...++.. .+ ...+++|+..+.| +.++++.+.+.+
T Consensus 175 ~y~p~iiV~NK~Dl~~~~~~~-~~~~~~~~~~~SA~~g~g-i~~l~~~i~~~L 225 (233)
T cd01896 175 VYIPCLYVYNKIDLISIEELD-LLARQPNSVVISAEKGLN-LDELKERIWDKL 225 (233)
T ss_pred eEeeEEEEEECccCCCHHHHH-HHhcCCCEEEEcCCCCCC-HHHHHHHHHHHh
Confidence 347999999999996544221 22 4568899999999 999998887766
No 461
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.21 E-value=0.0035 Score=39.35 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~ 91 (131)
.++++|++|+|||||+..+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 48999999999999999866
No 462
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.19 E-value=0.0013 Score=43.20 Aligned_cols=49 Identities=8% Similarity=0.073 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCcccccc-c---cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW-D---KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~-~---~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+..... . ...+ -+.+++|+.++.| +.++++.+.+.+
T Consensus 104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-i~~l~~~i~~~~ 161 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTN-VEEAFEELAREI 161 (164)
T ss_pred CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4689999999999865321 1 1122 4578999999999 999988776654
No 463
>PRK02496 adk adenylate kinase; Provisional
Probab=96.18 E-value=0.0043 Score=42.16 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
++++++|.+|+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987763
No 464
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.18 E-value=0.0016 Score=41.88 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCcEEeeccCCCcccccc---ccccc-----CCCCccccccCCcccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW---DKASW-----ENVTPIVSEQGDGEIIEIIDPS 50 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~---~~~~~-----~~~~~is~~~~~~~~~~~~~~~ 50 (131)
+.|+++++||+|+..... ....+ ...+++|+.++.| +.++++.+
T Consensus 108 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~g-v~~~~~~l 159 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKN-IDSAFKIV 159 (161)
T ss_pred CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCC-HHHHHHHh
Confidence 789999999999966321 11111 5689999999999 88876643
No 465
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.18 E-value=0.0034 Score=41.18 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++|+|..|+|||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999988764
No 466
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.18 E-value=0.0049 Score=42.77 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
....|.+.|.+|+|||||++.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998774
No 467
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.17 E-value=0.0014 Score=43.46 Aligned_cols=49 Identities=6% Similarity=-0.032 Sum_probs=35.2
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+...... ...+ ...+++|++++.| +.+++..+.+.+
T Consensus 106 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~ 163 (166)
T cd01869 106 ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATN-VEQAFMTMAREI 163 (166)
T ss_pred CCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcC-HHHHHHHHHHHH
Confidence 36899999999998543211 1112 4568899999999 999887766543
No 468
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.17 E-value=0.0016 Score=49.90 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=37.0
Q ss_pred ccCCCcEEeeccCCCccccccccc-----ccCCCCccccccCCccccc-ccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNWDKA-----SWENVTPIVSEQGDGEIIE-IIDPSLKLV 54 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~~~-----~~~~~~~is~~~~~~~~~~-~~~~~~~~~ 54 (131)
+...||+++|+||+|+...+.... .+.+++++||.++.+ +.+ +++.+.+++
T Consensus 214 l~t~KPvI~VlNK~D~~~~~~~l~~i~~~~~~~vvpISA~~e~~-l~~~l~~~i~~~l 270 (396)
T PRK09602 214 RKISKPMVIAANKADLPPAEENIERLKEEKYYIVVPTSAEAELA-LRRAAKAGLIDYI 270 (396)
T ss_pred hhcCCCEEEEEEchhcccchHHHHHHHhcCCCcEEEEcchhhhh-HHHHHHHhHHhhC
Confidence 345799999999999864321111 236689999999999 887 666777666
No 469
>PRK13949 shikimate kinase; Provisional
Probab=96.16 E-value=0.0042 Score=41.97 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999987663
No 470
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.16 E-value=0.0037 Score=43.10 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|.+|+|||||+..+...
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999988753
No 471
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.15 E-value=0.0013 Score=43.81 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.7
Q ss_pred CCCcEEeeccCCCccccccc-----------c---------ccc--CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-----------K---------ASW--ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-----------~---------~~~--~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|.||+|+.+.... . ..+ ...+.+||+++.| +.++++.+..
T Consensus 103 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g-i~~~f~~~~~ 171 (174)
T cd04135 103 PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKG-LKTVFDEAIL 171 (174)
T ss_pred CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCC-HHHHHHHHHH
Confidence 57999999999998543210 0 011 2467899999999 9999887654
No 472
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.14 E-value=0.0013 Score=46.15 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=35.7
Q ss_pred CCCcEEeeccCCCcccccccc--ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK--ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~--~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|++||.||+|+....... ..+ -..+.+||+++.| +.+++..+.+.+
T Consensus 116 ~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~-i~~~f~~l~~~~ 171 (219)
T PLN03071 116 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN-FEKPFLYLARKL 171 (219)
T ss_pred CCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCC-HHHHHHHHHHHH
Confidence 468999999999985432111 122 3468999999999 999998776554
No 473
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.14 E-value=0.0038 Score=42.91 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
=++++|++|+|||||+++++..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999853
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.13 E-value=0.0039 Score=42.88 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.1
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
+.+.|.+|+|||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998865
No 475
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.13 E-value=0.0024 Score=43.93 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCcccccccc-c---------cc-CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK-A---------SW-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~-~---------~~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+....... . .+ ...+.+|+.++.| +.++++.+.+.+
T Consensus 103 ~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 162 (198)
T cd04147 103 KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNEN-VLEVFKELLRQA 162 (198)
T ss_pred CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCC-HHHHHHHHHHHh
Confidence 579999999999986531111 0 12 2457899999999 999999887765
No 476
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.13 E-value=0.0018 Score=43.83 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCccccc--------cccccc-----C-CCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--------WDKASW-----E-NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--------~~~~~~-----~-~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||.|+.... ....++ . ..+.+|++++.| +.+++..+...+
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 166 (187)
T cd04132 104 PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN-VEEVFDTAIEEA 166 (187)
T ss_pred CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 468999999999985432 111112 2 568999999999 999988776655
No 477
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.13 E-value=0.0042 Score=44.10 Aligned_cols=22 Identities=32% Similarity=0.720 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
++++++|.||+||||+..++..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998764
No 478
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.12 E-value=0.0021 Score=43.65 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=33.7
Q ss_pred CCCcEEeeccCCCcccccc--ccc-cc--CC-------CCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DKA-SW--EN-------VTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~~-~~--~~-------~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|++||+||+|+..... ... .+ .. .+++||+++.| +.++++.+.+.+
T Consensus 117 ~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 177 (181)
T PLN00223 117 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG-LYEGLDWLSNNI 177 (181)
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 3689999999999864321 111 11 11 34689999999 999988776554
No 479
>PF13173 AAA_14: AAA domain
Probab=96.12 E-value=0.0041 Score=39.87 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-+++.|..+||||+++.+++..
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998854
No 480
>KOG3347|consensus
Probab=96.12 E-value=0.0038 Score=41.62 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...+|++.|.||+||||+..+++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 345799999999999999998873
No 481
>PRK08233 hypothetical protein; Provisional
Probab=96.11 E-value=0.0048 Score=41.50 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
+-|++.|.+|+|||||..++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4578899999999999998874
No 482
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.11 E-value=0.0016 Score=45.18 Aligned_cols=49 Identities=10% Similarity=-0.005 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCccccccccc--cc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKA--SW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~--~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|++||.||+|+........ .+ -..+.+||+.+.| +.+++..+.+.+
T Consensus 98 ~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~-v~~~F~~l~~~i 153 (200)
T smart00176 98 ENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYN-FEKPFLWLARKL 153 (200)
T ss_pred CCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4689999999999854321111 12 4568899999999 999998887654
No 483
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=96.09 E-value=0.0013 Score=48.98 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=38.2
Q ss_pred cCCCcEEeeccCCCccccccccc------ccCCCCccccccCCcccccccc-cccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWDKA------SWENVTPIVSEQGDGEIIEIID-PSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~~------~~~~~~~is~~~~~~~~~~~~~-~~~~~~ 54 (131)
...||+++|+||+|+...+.... .+.+++++|+..+.+ +.++.+ .+.+++
T Consensus 212 lt~KPvI~VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~-L~~L~~~~i~~~l 268 (318)
T cd01899 212 KRSKPMVIAANKADIPDAENNISKLRLKYPDEIVVPTSAEAELA-LRRAAKQGLIKYD 268 (318)
T ss_pred hcCCcEEEEEEHHHccChHHHHHHHHhhCCCCeEEEEeCccccc-HHHHHHhhHHHhC
Confidence 35699999999999864332111 136789999999999 999987 588887
No 484
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.08 E-value=0.0047 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCchhhhhhhhhCc
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~ 94 (131)
.++++|+.++||||+++.+++..
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCC
Confidence 69999999999999999998765
No 485
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.07 E-value=0.0013 Score=44.42 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCCcEEeeccCCCccccccc--------------------cccc--CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD--------------------KASW--ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~--------------------~~~~--~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.+.|+++|.||+|+.+.... ..++ ...+.+||+++.| +.++++.+.+
T Consensus 104 ~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~-v~~~f~~~~~ 172 (175)
T cd01874 104 PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKG-LKNVFDEAIL 172 (175)
T ss_pred CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCC-HHHHHHHHHH
Confidence 36899999999998543110 0111 2468899999999 9999877655
No 486
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.06 E-value=0.002 Score=43.83 Aligned_cols=47 Identities=15% Similarity=-0.038 Sum_probs=33.3
Q ss_pred CCCcEEeeccCCCcccc---ccccccc----------------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSID---NWDKASW----------------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~---~~~~~~~----------------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+... ++....+ .+++++|+..+.| +.++++.+.+
T Consensus 117 ~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g-~~~~~~wl~~ 182 (184)
T smart00178 117 ATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMG-YGEGFKWLSQ 182 (184)
T ss_pred cCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCC-hHHHHHHHHh
Confidence 57899999999998532 1111111 2378999999999 9888876654
No 487
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.06 E-value=0.0047 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.622 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++|+|.+|+|||+|+..++.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999887764
No 488
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.04 E-value=0.002 Score=43.68 Aligned_cols=48 Identities=15% Similarity=-0.040 Sum_probs=33.0
Q ss_pred CCCcEEeeccCCCcccc--ccccccc---------------------CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSID--NWDKASW---------------------ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~--~~~~~~~---------------------~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.+.|+++++||+|+... ......+ -..+++||+++.| +.++++.+.+.
T Consensus 119 ~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~e~~~~l~~~ 189 (190)
T cd00879 119 ANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQG-YGEAFRWLSQY 189 (190)
T ss_pred cCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCC-hHHHHHHHHhh
Confidence 46999999999998532 0111110 1357899999999 99888766543
No 489
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.03 E-value=0.0042 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.+|+|||++...+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998774
No 490
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.02 E-value=0.0038 Score=41.54 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=17.5
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
++++|.+|+||||+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 47899999999999998764
No 491
>PRK14531 adenylate kinase; Provisional
Probab=96.02 E-value=0.0052 Score=41.86 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+++++|.||+||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988763
No 492
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.00 E-value=0.0049 Score=41.70 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.9
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
++++|.||+||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999988764
No 493
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0064 Score=42.94 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|++|+|||||+..+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999987654
No 494
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=95.99 E-value=0.0033 Score=39.77 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=33.5
Q ss_pred cCCCcEEeeccCCCcccccccccc-----c-----CCCCccccccCCcccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWDKAS-----W-----ENVTPIVSEQGDGEIIEIIDPS 50 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~~~-----~-----~~~~~is~~~~~~~~~~~~~~~ 50 (131)
..++|+++++||+|+......... + ..++++|+..+.+ +.++++.+
T Consensus 100 ~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-i~~~~~~l 155 (157)
T cd00882 100 GENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN-VEELFEEL 155 (157)
T ss_pred cCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC-hHHHHHHH
Confidence 457999999999999654322211 1 5678899999999 88776654
No 495
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.97 E-value=0.0056 Score=41.73 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~ 91 (131)
.++++|+.|+|||||++..+
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 69999999999999999775
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.97 E-value=0.018 Score=37.58 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-+++.|+.|+|||||+..++..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999988854
No 497
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=95.96 E-value=0.0018 Score=42.84 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=33.3
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCC-ccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGD-GEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~-~~~~~~~~~~~~~ 53 (131)
.+.|+++|.||+|+...... ...+ ...+++|++++. | +.+++..+.+.
T Consensus 105 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~-v~~~f~~l~~~ 162 (165)
T cd04146 105 REIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDG-VHSVFHELCRE 162 (165)
T ss_pred CCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchh-HHHHHHHHHHH
Confidence 47899999999998543211 1112 345789999984 7 98888776554
No 498
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.96 E-value=0.0023 Score=42.56 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=32.3
Q ss_pred CCCcEEeeccCCCcccccc---ccccc---------CCCCccccccCCccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW---------ENVTPIVSEQGDGEIIEIIDPSL 51 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~---------~~~~~is~~~~~~~~~~~~~~~~ 51 (131)
.++|+++++||+|+.+... ....+ -.++++||+++.| +.++++.+.
T Consensus 114 ~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~l~ 171 (173)
T cd04155 114 AGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEG-LQEGMNWVC 171 (173)
T ss_pred cCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCC-HHHHHHHHh
Confidence 4689999999999865321 11111 1256899999999 998877654
No 499
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.95 E-value=0.0022 Score=43.71 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=35.7
Q ss_pred CCCcEEeeccCCCccccccc----------------cccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----------------KASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----------------~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+.+.... ...+ ...+.+||+.+.| +.+++..+.+.+
T Consensus 103 ~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~-v~e~f~~l~~~~ 173 (189)
T cd04134 103 PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG-VNEAFTEAARVA 173 (189)
T ss_pred CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC-HHHHHHHHHHHH
Confidence 36899999999999653210 0011 2367899999999 999998887665
No 500
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.95 E-value=0.0062 Score=42.32 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
....+.++|..|+|||||+++++.
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
Done!