Query psy10878
Match_columns 131
No_of_seqs 232 out of 1969
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 20:44:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 99.9 1.6E-22 5.4E-27 153.3 3.1 121 2-130 107-233 (436)
2 4dcu_A GTP-binding protein ENG 99.8 3.9E-21 1.3E-25 146.4 3.6 120 2-129 127-252 (456)
3 1mky_A Probable GTP-binding pr 99.8 5.4E-21 1.9E-25 145.0 2.8 125 2-130 106-238 (439)
4 4dkx_A RAS-related protein RAB 99.8 5.4E-20 1.9E-24 127.9 6.9 64 67-131 10-73 (216)
5 1puj_A YLQF, conserved hypothe 99.7 7.8E-18 2.7E-22 121.3 1.6 120 5-130 49-175 (282)
6 3cnl_A YLQF, putative uncharac 99.7 9.9E-18 3.4E-22 119.6 1.5 102 6-130 46-154 (262)
7 1z08_A RAS-related protein RAB 99.6 6E-16 2E-20 102.0 8.5 64 67-131 3-66 (170)
8 2gf9_A RAS-related protein RAB 99.6 1.1E-15 3.7E-20 103.0 9.9 67 64-131 16-82 (189)
9 2ew1_A RAS-related protein RAB 99.6 6.5E-16 2.2E-20 105.8 8.6 65 66-131 22-86 (201)
10 3c5c_A RAS-like protein 12; GD 99.6 7.6E-16 2.6E-20 103.9 8.7 64 66-131 17-80 (187)
11 3ihw_A Centg3; RAS, centaurin, 99.6 1E-15 3.5E-20 103.2 9.3 64 65-131 15-78 (184)
12 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.1E-15 3.7E-20 101.5 9.0 64 67-131 4-67 (177)
13 2oil_A CATX-8, RAS-related pro 99.6 1.3E-15 4.3E-20 102.9 9.3 66 65-131 20-85 (193)
14 2iwr_A Centaurin gamma 1; ANK 99.6 7E-16 2.4E-20 102.7 7.8 61 68-131 5-65 (178)
15 2bme_A RAB4A, RAS-related prot 99.6 1.3E-15 4.5E-20 101.9 9.1 64 67-131 7-70 (186)
16 2fu5_C RAS-related protein RAB 99.6 3.8E-16 1.3E-20 104.4 6.3 64 67-131 5-68 (183)
17 2a5j_A RAS-related protein RAB 99.6 9.5E-16 3.2E-20 103.5 8.2 67 64-131 15-81 (191)
18 2hxs_A RAB-26, RAS-related pro 99.6 4.1E-16 1.4E-20 103.6 6.2 65 67-131 3-67 (178)
19 1z0f_A RAB14, member RAS oncog 99.6 1.2E-15 4.1E-20 101.2 8.4 65 66-131 11-75 (179)
20 2bcg_Y Protein YP2, GTP-bindin 99.6 1.3E-15 4.5E-20 103.9 8.8 64 67-131 5-68 (206)
21 2hup_A RAS-related protein RAB 99.6 7.8E-16 2.7E-20 105.1 7.6 65 66-131 25-89 (201)
22 3tw8_B RAS-related protein RAB 99.6 9E-16 3.1E-20 102.0 7.6 65 66-131 5-69 (181)
23 1gwn_A RHO-related GTP-binding 99.6 8.5E-16 2.9E-20 105.4 7.5 67 63-131 21-87 (205)
24 1r2q_A RAS-related protein RAB 99.6 1.4E-15 4.7E-20 100.0 8.2 64 67-131 3-66 (170)
25 1z2a_A RAS-related protein RAB 99.6 9E-16 3.1E-20 100.8 7.3 63 68-131 3-65 (168)
26 2fn4_A P23, RAS-related protei 99.6 2.3E-15 7.8E-20 100.0 9.3 63 67-131 6-68 (181)
27 3t5g_A GTP-binding protein RHE 99.6 2.3E-15 7.7E-20 100.5 9.2 62 68-131 4-65 (181)
28 1ek0_A Protein (GTP-binding pr 99.6 1.7E-15 5.7E-20 99.6 8.3 62 69-131 2-63 (170)
29 1z06_A RAS-related protein RAB 99.6 1.3E-15 4.3E-20 102.7 7.8 65 66-131 16-80 (189)
30 1x3s_A RAS-related protein RAB 99.6 1.7E-15 5.9E-20 101.9 8.3 65 66-131 11-75 (195)
31 3tkl_A RAS-related protein RAB 99.6 2.6E-15 8.8E-20 101.2 8.9 64 67-131 13-76 (196)
32 2y8e_A RAB-protein 6, GH09086P 99.6 2.2E-15 7.5E-20 99.9 8.4 64 67-131 11-74 (179)
33 1z0j_A RAB-22, RAS-related pro 99.6 2.9E-15 9.8E-20 98.6 8.8 63 68-131 4-66 (170)
34 3kkq_A RAS-related protein M-R 99.6 3.3E-15 1.1E-19 99.8 9.0 64 66-131 14-77 (183)
35 2p5s_A RAS and EF-hand domain 99.6 1.7E-15 5.8E-20 103.0 7.6 64 67-131 25-88 (199)
36 2il1_A RAB12; G-protein, GDP, 99.6 1.6E-15 5.3E-20 102.7 7.3 65 66-131 22-86 (192)
37 1g16_A RAS-related protein SEC 99.6 1.2E-15 4E-20 100.5 6.4 62 69-131 2-63 (170)
38 2efe_B Small GTP-binding prote 99.6 2.8E-15 9.6E-20 99.8 8.3 65 66-131 8-72 (181)
39 2gco_A H9, RHO-related GTP-bin 99.6 2.6E-15 9E-20 102.2 8.3 66 64-131 19-84 (201)
40 1zbd_A Rabphilin-3A; G protein 99.6 3.7E-15 1.3E-19 101.3 9.0 64 67-131 5-68 (203)
41 2fg5_A RAB-22B, RAS-related pr 99.6 2.3E-15 7.7E-20 101.8 7.8 64 67-131 20-83 (192)
42 3q3j_B RHO-related GTP-binding 99.6 1.8E-15 6.1E-20 104.3 7.4 64 66-131 23-86 (214)
43 1m7b_A RND3/RHOE small GTP-bin 99.6 2.2E-15 7.4E-20 101.2 7.7 63 67-131 4-66 (184)
44 1vg8_A RAS-related protein RAB 99.6 2.3E-15 7.8E-20 102.4 7.8 64 67-131 5-68 (207)
45 2g6b_A RAS-related protein RAB 99.6 5.6E-15 1.9E-19 98.2 9.4 64 67-131 7-71 (180)
46 3reg_A RHO-like small GTPase; 99.6 3.8E-15 1.3E-19 100.6 8.5 63 67-131 20-82 (194)
47 2q3h_A RAS homolog gene family 99.6 2.9E-15 9.9E-20 101.7 7.6 64 66-131 16-79 (201)
48 3cpj_B GTP-binding protein YPT 99.6 3.5E-15 1.2E-19 103.2 8.0 64 67-131 10-73 (223)
49 3clv_A RAB5 protein, putative; 99.6 3.6E-15 1.2E-19 100.5 7.5 63 68-131 5-104 (208)
50 3gj0_A GTP-binding nuclear pro 99.6 2.1E-15 7.1E-20 104.1 6.2 65 66-131 11-75 (221)
51 3cbq_A GTP-binding protein REM 99.6 2.2E-15 7.5E-20 102.5 6.1 64 67-131 20-83 (195)
52 1c1y_A RAS-related protein RAP 99.6 5.9E-15 2E-19 96.8 8.0 60 70-131 3-62 (167)
53 1kao_A RAP2A; GTP-binding prot 99.6 9.8E-15 3.3E-19 95.5 9.0 60 70-131 3-62 (167)
54 1mh1_A RAC1; GTP-binding, GTPa 99.6 7.8E-15 2.7E-19 97.9 8.6 61 69-131 4-64 (186)
55 3l0i_B RAS-related protein RAB 99.6 2.2E-15 7.5E-20 102.4 6.0 64 67-131 30-93 (199)
56 2j0v_A RAC-like GTP-binding pr 99.6 5.2E-15 1.8E-19 101.3 7.9 62 68-131 7-68 (212)
57 2f9l_A RAB11B, member RAS onco 99.6 6.6E-15 2.3E-19 100.1 8.3 63 68-131 3-65 (199)
58 2o52_A RAS-related protein RAB 99.6 2.1E-15 7.2E-20 102.7 5.8 64 67-131 22-85 (200)
59 3bc1_A RAS-related protein RAB 99.6 7.8E-15 2.7E-19 98.3 8.5 64 67-131 8-81 (195)
60 1ky3_A GTP-binding protein YPT 99.6 2.5E-15 8.5E-20 99.9 5.7 65 67-131 5-69 (182)
61 3cph_A RAS-related protein SEC 99.6 5.1E-15 1.8E-19 101.1 7.4 64 67-131 17-80 (213)
62 2j1l_A RHO-related GTP-binding 99.6 5.7E-15 2E-19 101.6 7.4 63 67-131 31-93 (214)
63 2atv_A RERG, RAS-like estrogen 99.6 1.2E-14 4.2E-19 98.4 8.9 62 68-131 26-87 (196)
64 1oix_A RAS-related protein RAB 99.6 1.5E-14 5E-19 98.0 9.2 64 67-131 26-89 (191)
65 2atx_A Small GTP binding prote 99.6 8.5E-15 2.9E-19 98.8 7.9 63 67-131 15-77 (194)
66 4dsu_A GTPase KRAS, isoform 2B 99.6 1.7E-14 5.6E-19 96.5 9.1 61 69-131 3-63 (189)
67 2f7s_A C25KG, RAS-related prot 99.6 2.7E-15 9.4E-20 103.0 5.3 65 66-131 21-95 (217)
68 3oes_A GTPase rhebl1; small GT 99.6 5.6E-15 1.9E-19 100.5 6.7 63 67-131 21-83 (201)
69 2bov_A RAla, RAS-related prote 99.6 2E-14 6.9E-19 97.5 9.1 63 67-131 11-73 (206)
70 1u8z_A RAS-related protein RAL 99.6 2E-14 7E-19 94.0 8.7 60 70-131 4-63 (168)
71 2erx_A GTP-binding protein DI- 99.6 2.2E-14 7.7E-19 94.3 8.9 61 69-131 2-62 (172)
72 2fv8_A H6, RHO-related GTP-bin 99.6 1.1E-14 3.9E-19 99.5 7.7 63 67-131 22-84 (207)
73 3con_A GTPase NRAS; structural 99.5 2.3E-14 8E-19 96.3 8.9 64 66-131 17-80 (190)
74 2nzj_A GTP-binding protein REM 99.5 1E-14 3.6E-19 96.4 6.9 61 69-131 3-63 (175)
75 2a9k_A RAS-related protein RAL 99.5 3.1E-14 1.1E-18 94.9 8.9 63 67-131 15-77 (187)
76 3q85_A GTP-binding protein REM 99.5 1.5E-14 5.1E-19 95.2 7.1 61 70-131 2-62 (169)
77 3dz8_A RAS-related protein RAB 99.5 6.4E-16 2.2E-20 104.4 -0.2 65 66-131 19-83 (191)
78 2yc2_C IFT27, small RAB-relate 99.5 3.7E-15 1.2E-19 101.2 3.5 63 68-131 18-84 (208)
79 4gzl_A RAS-related C3 botulinu 99.5 2.1E-14 7.1E-19 98.1 7.3 63 67-131 27-89 (204)
80 2gf0_A GTP-binding protein DI- 99.5 3.2E-14 1.1E-18 96.0 7.9 62 68-131 6-67 (199)
81 2ce2_X GTPase HRAS; signaling 99.5 5.9E-14 2E-18 91.5 8.8 60 70-131 3-62 (166)
82 3bwd_D RAC-like GTP-binding pr 99.5 3.7E-15 1.3E-19 99.3 2.1 62 68-131 6-67 (182)
83 3h2y_A GTPase family protein; 99.5 4.6E-15 1.6E-19 110.4 2.5 107 5-130 95-221 (368)
84 3t1o_A Gliding protein MGLA; G 99.5 1E-14 3.5E-19 98.1 3.8 63 67-131 11-85 (198)
85 3ec1_A YQEH GTPase; atnos1, at 99.5 5.5E-15 1.9E-19 110.0 2.5 104 6-130 98-222 (369)
86 2g3y_A GTP-binding protein GEM 99.5 5.5E-14 1.9E-18 97.2 7.3 63 67-131 34-98 (211)
87 4djt_A GTP-binding nuclear pro 99.5 3.1E-14 1.1E-18 97.7 6.1 65 67-131 8-72 (218)
88 4bas_A ADP-ribosylation factor 99.5 3.1E-14 1.1E-18 96.1 5.6 63 64-131 11-74 (199)
89 2zej_A Dardarin, leucine-rich 99.5 1E-14 3.6E-19 98.0 3.1 62 70-131 2-67 (184)
90 2wjg_A FEOB, ferrous iron tran 99.5 9.1E-14 3.1E-18 93.1 7.7 61 68-131 5-65 (188)
91 2wji_A Ferrous iron transport 99.5 6.4E-14 2.2E-18 92.6 6.8 59 70-131 3-61 (165)
92 2cjw_A GTP-binding protein GEM 99.5 9.2E-14 3.1E-18 94.2 7.1 61 69-131 5-67 (192)
93 2h57_A ADP-ribosylation factor 99.5 6.5E-14 2.2E-18 94.3 5.7 61 66-131 17-78 (190)
94 1zd9_A ADP-ribosylation factor 99.5 4.8E-14 1.6E-18 94.9 5.0 60 67-131 19-78 (188)
95 3q72_A GTP-binding protein RAD 99.5 1.1E-13 3.8E-18 90.8 6.2 59 70-131 2-60 (166)
96 2lkc_A Translation initiation 99.4 7.5E-14 2.6E-18 92.6 4.8 62 67-131 5-66 (178)
97 2fh5_B SR-beta, signal recogni 99.4 1.3E-13 4.4E-18 94.4 5.5 60 68-131 5-65 (214)
98 3th5_A RAS-related C3 botulinu 99.1 1.2E-14 4.1E-19 99.0 0.0 63 67-131 27-89 (204)
99 1zj6_A ADP-ribosylation factor 99.4 1.6E-13 5.4E-18 92.1 5.1 57 69-131 15-71 (187)
100 1r8s_A ADP-ribosylation factor 99.4 1.2E-13 4.2E-18 90.4 4.3 55 71-131 1-55 (164)
101 2h17_A ADP-ribosylation factor 99.4 9.1E-14 3.1E-18 93.0 3.6 61 65-131 16-76 (181)
102 2wkq_A NPH1-1, RAS-related C3 99.4 5.5E-13 1.9E-17 96.6 7.9 61 69-131 154-214 (332)
103 1ksh_A ARF-like protein 2; sma 99.4 2.6E-13 9E-18 90.8 5.5 58 68-131 16-73 (186)
104 1upt_A ARL1, ADP-ribosylation 99.4 4.9E-13 1.7E-17 87.9 6.7 57 69-131 6-62 (171)
105 1fzq_A ADP-ribosylation factor 99.4 1.8E-13 6.3E-18 91.7 4.6 58 68-131 14-71 (181)
106 1m2o_B GTP-binding protein SAR 99.4 5.6E-13 1.9E-17 90.0 7.0 57 69-131 22-78 (190)
107 1f6b_A SAR1; gtpases, N-termin 99.4 2.4E-13 8.3E-18 92.5 4.4 57 69-131 24-80 (198)
108 2b6h_A ADP-ribosylation factor 99.4 2.4E-13 8.1E-18 92.0 4.3 58 68-131 27-84 (192)
109 1moz_A ARL1, ADP-ribosylation 99.4 3E-13 1E-17 90.1 3.8 58 68-131 16-73 (183)
110 2gj8_A MNME, tRNA modification 99.4 1.8E-12 6.2E-17 86.3 7.3 59 70-131 4-63 (172)
111 3llu_A RAS-related GTP-binding 99.4 3E-13 1E-17 91.6 3.4 64 65-131 15-80 (196)
112 3r7w_B Gtpase2, GTP-binding pr 99.4 4.1E-13 1.4E-17 98.3 4.1 54 72-131 1-57 (331)
113 3a1s_A Iron(II) transport prot 99.3 1.8E-12 6.3E-17 92.0 7.2 61 68-131 3-63 (258)
114 2x77_A ADP-ribosylation factor 99.3 4.1E-13 1.4E-17 90.1 3.4 57 69-131 21-77 (189)
115 3r7w_A Gtpase1, GTP-binding pr 99.3 1.4E-12 4.7E-17 94.7 5.7 59 69-131 2-63 (307)
116 3t5d_A Septin-7; GTP-binding p 99.3 1.2E-12 4.2E-17 93.4 5.2 62 68-130 6-75 (274)
117 2qu8_A Putative nucleolar GTP- 99.3 1.8E-12 6.3E-17 89.8 5.6 60 68-130 27-86 (228)
118 2dyk_A GTP-binding protein; GT 99.3 2.6E-12 8.8E-17 83.7 6.0 58 71-131 2-60 (161)
119 3k53_A Ferrous iron transport 99.3 5.2E-12 1.8E-16 90.0 6.6 59 70-131 3-61 (271)
120 3iby_A Ferrous iron transport 99.3 5.4E-12 1.8E-16 89.5 6.2 57 72-131 3-59 (256)
121 3i8s_A Ferrous iron transport 99.3 4E-12 1.4E-16 90.9 4.9 59 70-131 3-61 (274)
122 1svi_A GTP-binding protein YSX 99.2 6.5E-12 2.2E-16 84.4 5.2 58 68-129 21-78 (195)
123 3b1v_A Ferrous iron uptake tra 99.2 3.9E-12 1.3E-16 91.0 4.2 58 70-131 3-60 (272)
124 3dpu_A RAB family protein; roc 99.2 3E-12 1E-16 99.1 3.6 65 67-131 38-109 (535)
125 3lxx_A GTPase IMAP family memb 99.2 2E-11 7E-16 85.2 7.0 61 67-130 26-88 (239)
126 3def_A T7I23.11 protein; chlor 99.2 2.4E-11 8.1E-16 86.2 7.3 60 68-131 34-95 (262)
127 3lxw_A GTPase IMAP family memb 99.2 5.6E-12 1.9E-16 88.9 3.9 62 66-130 17-80 (247)
128 1mky_A Probable GTP-binding pr 99.2 9.9E-12 3.4E-16 94.2 5.4 57 72-131 3-60 (439)
129 3o47_A ADP-ribosylation factor 99.2 6.3E-12 2.2E-16 92.1 3.9 58 68-131 163-220 (329)
130 3lvq_E ARF-GAP with SH3 domain 99.2 1.5E-11 5.2E-16 94.2 5.2 59 67-131 319-377 (497)
131 3c5h_A Glucocorticoid receptor 99.2 9.2E-13 3.2E-17 93.2 -1.7 60 66-126 15-101 (255)
132 2yv5_A YJEQ protein; hydrolase 99.2 3.5E-12 1.2E-16 92.5 1.3 69 4-91 108-186 (302)
133 2xtp_A GTPase IMAP family memb 99.2 2.6E-11 8.9E-16 85.6 5.6 61 67-130 19-81 (260)
134 1h65_A Chloroplast outer envel 99.2 1.3E-11 4.6E-16 87.8 4.1 60 68-131 37-98 (270)
135 2cxx_A Probable GTP-binding pr 99.2 1.7E-11 5.8E-16 81.9 4.4 52 71-129 2-53 (190)
136 1nrj_B SR-beta, signal recogni 99.2 5.5E-12 1.9E-16 86.4 1.6 55 67-131 9-66 (218)
137 1t9h_A YLOQ, probable GTPase E 99.2 1.1E-12 3.9E-17 95.3 -2.0 71 4-93 115-196 (307)
138 2rcn_A Probable GTPase ENGC; Y 99.2 4.8E-12 1.7E-16 93.7 1.1 72 4-94 158-239 (358)
139 2ged_A SR-beta, signal recogni 99.1 5.6E-12 1.9E-16 84.7 0.9 54 68-131 46-102 (193)
140 1wf3_A GTP-binding protein; GT 99.1 8.5E-11 2.9E-15 85.2 7.2 60 69-131 6-66 (301)
141 3pqc_A Probable GTP-binding pr 99.1 6.9E-11 2.4E-15 79.1 6.1 58 67-129 20-77 (195)
142 1u0l_A Probable GTPase ENGC; p 99.1 1.3E-11 4.6E-16 89.3 1.7 71 5-94 114-193 (301)
143 4dhe_A Probable GTP-binding pr 99.1 2.6E-11 8.7E-16 83.3 2.4 63 68-130 27-89 (223)
144 3gee_A MNME, tRNA modification 99.1 7.3E-11 2.5E-15 90.4 4.4 60 69-131 232-292 (476)
145 1pui_A ENGB, probable GTP-bind 99.1 7.3E-11 2.5E-15 80.3 3.9 58 69-130 25-82 (210)
146 2qag_A Septin-2, protein NEDD5 99.1 1.1E-10 3.6E-15 86.6 4.9 62 68-130 35-105 (361)
147 3iev_A GTP-binding protein ERA 99.1 3.2E-10 1.1E-14 82.3 7.1 62 67-130 7-69 (308)
148 3qq5_A Small GTP-binding prote 99.0 2.6E-10 8.7E-15 86.2 5.2 63 67-131 31-94 (423)
149 2hjg_A GTP-binding protein ENG 99.0 5.4E-11 1.8E-15 90.1 1.3 57 71-131 4-62 (436)
150 1xzp_A Probable tRNA modificat 99.0 1.2E-10 4.1E-15 89.4 2.8 59 70-131 243-302 (482)
151 1jal_A YCHF protein; nucleotid 99.0 1.6E-10 5.4E-15 85.8 2.9 58 71-131 3-77 (363)
152 2aka_B Dynamin-1; fusion prote 98.9 2.7E-10 9.2E-15 81.6 2.7 29 68-96 24-52 (299)
153 3j2k_7 ERF3, eukaryotic polype 98.9 2.4E-09 8.2E-14 81.2 7.5 62 67-131 14-106 (439)
154 3geh_A MNME, tRNA modification 98.9 2.1E-10 7.1E-15 87.6 1.3 59 69-130 223-282 (462)
155 2ohf_A Protein OLA1, GTP-bindi 98.9 6.1E-10 2.1E-14 83.4 3.3 62 69-131 21-97 (396)
156 1wxq_A GTP-binding protein; st 98.9 1.3E-09 4.4E-14 81.8 4.7 25 71-95 1-25 (397)
157 2qnr_A Septin-2, protein NEDD5 98.9 8.4E-10 2.9E-14 79.9 3.2 63 67-130 15-86 (301)
158 2e87_A Hypothetical protein PH 98.9 2.1E-09 7.2E-14 79.3 5.0 60 68-130 165-224 (357)
159 1ega_A Protein (GTP-binding pr 98.9 2.9E-09 9.9E-14 77.0 5.6 60 69-131 7-67 (301)
160 2qtf_A Protein HFLX, GTP-bindi 98.9 2.3E-09 8E-14 79.5 5.1 58 70-130 178-236 (364)
161 4dcu_A GTP-binding protein ENG 98.9 4.7E-10 1.6E-14 85.3 1.4 59 69-129 22-80 (456)
162 2qag_C Septin-7; cell cycle, c 98.8 6.3E-09 2.2E-13 78.5 7.1 65 66-131 27-99 (418)
163 3izy_P Translation initiation 98.8 1.7E-10 5.8E-15 89.5 -3.0 60 70-131 4-63 (537)
164 3p26_A Elongation factor 1 alp 98.8 2.4E-09 8.3E-14 82.0 3.0 26 68-93 31-56 (483)
165 2x2e_A Dynamin-1; nitration, h 98.7 4.1E-09 1.4E-13 77.7 2.6 27 70-96 31-57 (353)
166 1wb1_A Translation elongation 98.7 7.4E-09 2.5E-13 79.4 4.0 62 67-131 16-84 (482)
167 3izq_1 HBS1P, elongation facto 98.7 6.5E-09 2.2E-13 81.8 3.4 27 67-93 164-190 (611)
168 2dby_A GTP-binding protein; GD 98.7 7.5E-09 2.6E-13 76.9 3.0 24 71-94 2-25 (368)
169 1s0u_A EIF-2-gamma, translatio 98.7 2.5E-08 8.6E-13 74.8 5.9 63 69-131 7-92 (408)
170 3mca_A HBS1, elongation factor 98.7 6.5E-09 2.2E-13 81.5 2.3 26 67-92 174-199 (592)
171 1jwy_B Dynamin A GTPase domain 98.7 2E-08 6.9E-13 72.4 4.6 27 69-95 23-49 (315)
172 1kk1_A EIF2gamma; initiation o 98.6 6.4E-08 2.2E-12 72.6 7.1 65 67-131 7-94 (410)
173 1jny_A EF-1-alpha, elongation 98.6 8.5E-09 2.9E-13 78.0 2.2 25 69-93 5-29 (435)
174 1zo1_I IF2, translation initia 98.6 2.4E-09 8.2E-14 82.4 -0.9 59 70-131 4-62 (501)
175 1zun_B Sulfate adenylate trans 98.6 3.1E-08 1E-12 74.9 5.1 26 68-93 22-47 (434)
176 4a9a_A Ribosome-interacting GT 98.6 2.7E-08 9.1E-13 74.1 4.4 60 67-129 69-128 (376)
177 1f60_A Elongation factor EEF1A 98.6 1.1E-08 3.8E-13 77.9 2.3 26 68-93 5-30 (458)
178 2c78_A Elongation factor TU-A; 98.6 1.1E-08 3.8E-13 76.6 2.1 25 68-92 9-33 (405)
179 3t34_A Dynamin-related protein 98.6 1.7E-08 5.7E-13 74.5 3.0 24 72-95 36-59 (360)
180 1lnz_A SPO0B-associated GTP-bi 98.6 7E-09 2.4E-13 76.4 0.4 55 72-130 160-216 (342)
181 3sjy_A Translation initiation 98.6 1.3E-07 4.4E-12 70.9 7.2 28 67-94 5-32 (403)
182 3cb4_D GTP-binding protein LEP 98.6 7E-08 2.4E-12 75.8 5.9 62 70-131 4-82 (599)
183 3tr5_A RF-3, peptide chain rel 98.5 1.2E-08 4.2E-13 79.0 0.7 23 69-91 12-34 (528)
184 1d2e_A Elongation factor TU (E 98.5 2.7E-08 9.1E-13 74.5 2.5 24 70-93 3-26 (397)
185 2elf_A Protein translation elo 98.5 5.1E-08 1.7E-12 72.5 3.7 49 72-131 23-71 (370)
186 2h5e_A Peptide chain release f 98.5 2.7E-08 9.2E-13 77.1 2.3 24 69-92 12-35 (529)
187 1n0u_A EF-2, elongation factor 98.5 1.2E-07 3.9E-12 77.2 5.9 25 69-93 18-42 (842)
188 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 7E-08 2.4E-12 72.3 4.1 61 69-130 19-95 (392)
189 1r5b_A Eukaryotic peptide chai 98.5 5.5E-08 1.9E-12 74.2 2.9 25 68-92 41-65 (467)
190 2hf9_A Probable hydrogenase ni 98.5 5.9E-09 2E-13 71.6 -2.3 40 69-108 37-76 (226)
191 2j69_A Bacterial dynamin-like 98.5 1.2E-07 4.2E-12 75.6 4.7 35 69-103 68-103 (695)
192 2ywe_A GTP-binding protein LEP 98.5 1.3E-07 4.5E-12 74.2 4.8 63 69-131 5-84 (600)
193 2dy1_A Elongation factor G; tr 98.4 9.4E-08 3.2E-12 75.9 3.5 60 69-131 8-85 (665)
194 1dar_A EF-G, elongation factor 98.4 2.2E-07 7.6E-12 74.0 5.2 60 67-131 9-88 (691)
195 1g7s_A Translation initiation 98.4 5.2E-08 1.8E-12 76.5 1.4 63 69-131 4-81 (594)
196 2qpt_A EH domain-containing pr 98.4 1.7E-07 5.6E-12 73.0 3.6 29 68-96 63-91 (550)
197 2xex_A Elongation factor G; GT 98.3 3.9E-07 1.3E-11 72.7 4.5 25 68-92 8-32 (693)
198 3avx_A Elongation factor TS, e 98.3 1E-07 3.5E-12 79.5 1.2 64 67-131 293-370 (1289)
199 2rdo_7 EF-G, elongation factor 98.3 1.2E-06 4E-11 70.0 7.1 25 68-92 8-32 (704)
200 1f5n_A Interferon-induced guan 98.2 2.2E-06 7.5E-11 67.2 5.4 60 69-130 37-101 (592)
201 1udx_A The GTP-binding protein 98.1 1.3E-06 4.6E-11 65.8 3.6 56 72-130 159-215 (416)
202 2wsm_A Hydrogenase expression/ 98.1 3.9E-07 1.3E-11 62.2 -0.1 24 70-93 30-53 (221)
203 1x3s_A RAS-related protein RAB 98.1 7.4E-07 2.5E-11 59.3 1.0 49 5-54 120-176 (195)
204 4fid_A G protein alpha subunit 98.0 5.4E-06 1.9E-10 61.0 4.1 22 68-89 3-24 (340)
205 3sop_A Neuronal-specific septi 97.8 7.5E-06 2.6E-10 58.3 2.7 24 70-93 2-25 (270)
206 3t5g_A GTP-binding protein RHE 97.8 8.1E-07 2.8E-11 58.5 -2.9 49 5-54 110-167 (181)
207 3zvr_A Dynamin-1; hydrolase, D 97.8 2.2E-05 7.7E-10 63.2 4.8 61 31-95 15-76 (772)
208 2qag_B Septin-6, protein NEDD5 97.7 7.2E-05 2.5E-09 56.6 6.8 27 69-95 41-67 (427)
209 2dyk_A GTP-binding protein; GT 97.6 1.9E-05 6.6E-10 50.6 1.9 49 5-54 107-160 (161)
210 3q5d_A Atlastin-1; G protein, 97.5 0.00015 5.2E-09 55.1 5.2 62 69-130 66-150 (447)
211 3q72_A GTP-binding protein RAD 97.4 2.6E-05 8.8E-10 50.3 0.3 49 5-54 105-162 (166)
212 3iev_A GTP-binding protein ERA 97.3 6.1E-05 2.1E-09 54.4 1.7 51 3-54 119-180 (308)
213 4dsu_A GTPase KRAS, isoform 2B 97.3 4.9E-05 1.7E-09 49.9 1.1 49 5-54 108-164 (189)
214 2gj8_A MNME, tRNA modification 97.3 1.4E-05 4.9E-10 52.5 -1.6 49 5-54 114-164 (172)
215 3q85_A GTP-binding protein REM 97.3 3.7E-05 1.3E-09 49.7 0.3 49 5-54 108-165 (169)
216 2nzj_A GTP-binding protein REM 97.2 4.6E-05 1.6E-09 49.4 0.1 49 5-54 110-167 (175)
217 3l0i_B RAS-related protein RAB 97.2 8.7E-05 3E-09 49.6 1.4 49 5-54 137-194 (199)
218 3cb4_D GTP-binding protein LEP 97.2 4.3E-05 1.5E-09 60.1 -0.1 82 4-92 121-215 (599)
219 3cph_A RAS-related protein SEC 97.2 4.3E-05 1.5E-09 51.4 -0.1 48 6-54 125-180 (213)
220 1wms_A RAB-9, RAB9, RAS-relate 97.2 8.7E-05 3E-09 48.3 1.3 49 5-54 115-172 (177)
221 2erx_A GTP-binding protein DI- 97.2 5.4E-05 1.9E-09 48.8 0.3 49 5-54 108-165 (172)
222 1c1y_A RAS-related protein RAP 97.2 5.7E-05 2E-09 48.5 0.3 49 5-54 107-165 (167)
223 3tw8_B RAS-related protein RAB 97.2 6.7E-05 2.3E-09 48.8 0.4 48 6-54 113-169 (181)
224 4djt_A GTP-binding nuclear pro 97.2 6.9E-05 2.3E-09 50.7 0.4 49 5-54 116-173 (218)
225 1kao_A RAP2A; GTP-binding prot 97.2 3.2E-05 1.1E-09 49.6 -1.4 49 5-54 107-164 (167)
226 1g16_A RAS-related protein SEC 97.1 8.3E-05 2.8E-09 47.9 0.5 49 5-54 107-163 (170)
227 2g6b_A RAS-related protein RAB 97.1 9E-05 3.1E-09 48.3 0.7 49 5-54 115-172 (180)
228 2gf0_A GTP-binding protein DI- 97.1 7.7E-05 2.6E-09 49.5 0.3 49 5-54 113-169 (199)
229 3kkq_A RAS-related protein M-R 97.1 0.00011 3.7E-09 48.2 1.0 50 4-54 121-180 (183)
230 2j0v_A RAC-like GTP-binding pr 97.1 2.1E-05 7E-10 53.1 -2.7 48 6-54 113-178 (212)
231 2ce2_X GTPase HRAS; signaling 97.1 0.0001 3.6E-09 47.0 0.8 49 5-54 107-163 (166)
232 1z0f_A RAB14, member RAS oncog 97.1 8.9E-05 3E-09 48.2 0.5 49 5-54 119-176 (179)
233 1u8z_A RAS-related protein RAL 97.1 6.5E-05 2.2E-09 48.2 -0.2 49 5-54 108-165 (168)
234 2www_A Methylmalonic aciduria 97.1 0.00024 8.3E-09 52.2 2.7 24 69-92 73-96 (349)
235 2gf9_A RAS-related protein RAB 97.1 8.4E-05 2.9E-09 49.2 0.2 49 5-54 126-183 (189)
236 2g3y_A GTP-binding protein GEM 97.1 8.5E-05 2.9E-09 50.8 0.2 49 5-54 144-201 (211)
237 3dz8_A RAS-related protein RAB 97.1 8.6E-05 2.9E-09 49.3 0.2 49 5-54 127-184 (191)
238 2fn4_A P23, RAS-related protei 97.1 6.9E-05 2.4E-09 48.8 -0.3 49 5-54 113-170 (181)
239 2efe_B Small GTP-binding prote 97.1 0.00011 3.9E-09 47.9 0.7 49 5-54 116-173 (181)
240 3gj0_A GTP-binding nuclear pro 97.1 0.00015 5.1E-09 49.2 1.3 48 6-54 119-173 (221)
241 3tkl_A RAS-related protein RAB 97.1 0.00013 4.3E-09 48.3 0.9 49 5-54 120-177 (196)
242 1vg8_A RAS-related protein RAB 97.1 0.0001 3.5E-09 49.2 0.4 49 5-54 116-173 (207)
243 1tq4_A IIGP1, interferon-induc 97.1 0.00023 7.9E-09 53.6 2.3 23 71-93 70-92 (413)
244 1z0j_A RAB-22, RAS-related pro 97.1 0.00012 4E-09 47.2 0.6 49 5-54 110-167 (170)
245 3bc1_A RAS-related protein RAB 97.1 0.00013 4.6E-09 47.9 0.9 49 5-54 126-183 (195)
246 2y8e_A RAB-protein 6, GH09086P 97.0 8.9E-05 3E-09 48.2 -0.1 49 5-54 118-175 (179)
247 1ye8_A Protein THEP1, hypothet 97.0 0.00028 9.7E-09 47.0 2.4 22 72-93 2-23 (178)
248 1ky3_A GTP-binding protein YPT 97.0 0.00018 6.1E-09 46.8 1.3 49 5-54 117-176 (182)
249 3con_A GTPase NRAS; structural 97.0 0.00016 5.3E-09 47.8 0.9 49 5-54 125-181 (190)
250 2bov_A RAla, RAS-related prote 97.0 0.00013 4.5E-09 48.6 0.5 49 5-54 118-175 (206)
251 3pqc_A Probable GTP-binding pr 97.0 8.8E-05 3E-09 48.9 -0.4 50 4-54 131-192 (195)
252 2a9k_A RAS-related protein RAL 97.0 9.9E-05 3.4E-09 48.3 -0.2 49 5-54 122-179 (187)
253 1lnz_A SPO0B-associated GTP-bi 97.0 0.00015 5.1E-09 53.3 0.8 49 5-54 273-328 (342)
254 1z06_A RAS-related protein RAB 97.0 0.00021 7.2E-09 47.2 1.4 50 4-54 125-186 (189)
255 1zbd_A Rabphilin-3A; G protein 97.0 0.00013 4.6E-09 48.6 0.4 49 5-54 112-169 (203)
256 3t1o_A Gliding protein MGLA; G 97.0 0.00017 5.7E-09 47.6 0.8 49 5-54 134-190 (198)
257 1z08_A RAS-related protein RAB 97.0 7.6E-05 2.6E-09 48.2 -0.9 49 5-54 110-167 (170)
258 1ek0_A Protein (GTP-binding pr 97.0 0.00014 4.7E-09 46.8 0.3 49 5-54 107-167 (170)
259 1kgd_A CASK, peripheral plasma 97.0 0.00034 1.1E-08 46.4 2.2 21 72-92 7-27 (180)
260 2fg5_A RAB-22B, RAS-related pr 96.9 0.00012 4.1E-09 48.6 -0.1 49 5-54 127-184 (192)
261 1r2q_A RAS-related protein RAB 96.9 0.00012 4.2E-09 47.0 -0.0 49 5-54 110-167 (170)
262 1r8s_A ADP-ribosylation factor 96.9 0.00012 4.2E-09 46.9 -0.1 49 5-54 100-160 (164)
263 2wji_A Ferrous iron transport 96.9 6.7E-05 2.3E-09 48.7 -1.4 49 5-54 107-163 (165)
264 2f7s_A C25KG, RAS-related prot 96.9 0.00017 5.7E-09 48.7 0.4 49 5-54 140-197 (217)
265 1z2a_A RAS-related protein RAB 96.9 0.00012 4.1E-09 47.0 -0.3 49 5-54 108-165 (168)
266 2a5j_A RAS-related protein RAB 96.9 0.00015 5E-09 48.1 0.1 49 5-54 125-182 (191)
267 2fu5_C RAS-related protein RAB 96.9 0.00013 4.4E-09 47.8 -0.3 49 5-54 112-169 (183)
268 3iby_A Ferrous iron transport 96.9 8.6E-05 2.9E-09 52.3 -1.3 50 3-53 107-164 (256)
269 1ega_A Protein (GTP-binding pr 96.9 0.0002 6.7E-09 51.5 0.6 50 4-54 114-173 (301)
270 4bas_A ADP-ribosylation factor 96.9 0.00011 3.9E-09 48.7 -0.6 48 6-54 127-187 (199)
271 3oes_A GTPase rhebl1; small GT 96.9 8E-05 2.7E-09 49.9 -1.5 49 5-54 128-185 (201)
272 2x77_A ADP-ribosylation factor 96.9 0.00013 4.6E-09 48.1 -0.4 49 5-54 122-182 (189)
273 3cbq_A GTP-binding protein REM 96.9 0.00019 6.5E-09 48.0 0.3 49 5-54 129-186 (195)
274 1zd9_A ADP-ribosylation factor 96.9 0.00018 6.1E-09 47.6 0.2 49 5-54 123-183 (188)
275 2bcg_Y Protein YP2, GTP-bindin 96.9 0.00022 7.4E-09 47.8 0.6 49 5-54 112-169 (206)
276 2ew1_A RAS-related protein RAB 96.8 0.00017 6E-09 48.6 0.0 49 5-54 130-187 (201)
277 4dkx_A RAS-related protein RAB 96.8 0.0002 6.9E-09 49.2 0.3 49 5-54 117-174 (216)
278 2il1_A RAB12; G-protein, GDP, 96.8 0.00015 5E-09 48.3 -0.4 49 5-54 130-188 (192)
279 2oil_A CATX-8, RAS-related pro 96.8 0.00015 5.1E-09 48.0 -0.4 49 5-54 129-186 (193)
280 1lvg_A Guanylate kinase, GMP k 96.8 0.00051 1.7E-08 46.3 2.2 21 72-92 6-26 (198)
281 1m2o_B GTP-binding protein SAR 96.8 0.00034 1.2E-08 46.5 1.2 47 5-52 123-188 (190)
282 1zj6_A ADP-ribosylation factor 96.8 0.00016 5.4E-09 47.7 -0.5 49 5-54 116-176 (187)
283 3reg_A RHO-like small GTPase; 96.8 0.00022 7.4E-09 47.3 0.2 48 6-54 127-186 (194)
284 1moz_A ARL1, ADP-ribosylation 96.8 0.00015 5.2E-09 47.4 -0.7 49 5-54 118-178 (183)
285 2atv_A RERG, RAS-like estrogen 96.8 0.00021 7E-09 47.6 -0.1 49 5-54 131-189 (196)
286 3th5_A RAS-related C3 botulinu 95.8 0.00022 7.4E-09 47.8 0.0 47 6-53 134-202 (204)
287 3vqt_A RF-3, peptide chain rel 96.8 0.00078 2.7E-08 52.4 3.1 23 69-91 30-52 (548)
288 2b6h_A ADP-ribosylation factor 96.8 0.00016 5.5E-09 48.2 -0.7 49 5-54 129-189 (192)
289 1fzq_A ADP-ribosylation factor 96.8 0.00027 9.4E-09 46.5 0.5 49 5-54 116-176 (181)
290 2hup_A RAS-related protein RAB 96.8 0.00022 7.6E-09 47.8 0.0 49 5-54 133-191 (201)
291 1upt_A ARL1, ADP-ribosylation 96.7 0.00014 4.7E-09 46.9 -1.0 49 5-54 107-167 (171)
292 1f6b_A SAR1; gtpases, N-termin 96.7 0.00034 1.2E-08 46.9 0.8 49 5-54 125-197 (198)
293 2bme_A RAB4A, RAS-related prot 96.7 0.00021 7.3E-09 46.8 -0.2 49 5-54 114-171 (186)
294 2h17_A ADP-ribosylation factor 96.7 0.00018 6.2E-09 47.3 -0.7 47 5-52 121-179 (181)
295 1svi_A GTP-binding protein YSX 96.7 0.00018 6.3E-09 47.5 -0.7 50 4-54 132-193 (195)
296 3izy_P Translation initiation 96.7 0.00051 1.7E-08 53.4 1.7 52 3-55 101-167 (537)
297 3ney_A 55 kDa erythrocyte memb 96.7 0.00072 2.5E-08 46.0 2.2 21 72-92 21-41 (197)
298 4dhe_A Probable GTP-binding pr 96.7 5.5E-05 1.9E-09 51.3 -3.4 51 3-54 141-209 (223)
299 1zp6_A Hypothetical protein AT 96.7 0.00071 2.4E-08 44.8 2.1 22 72-93 11-32 (191)
300 2cjw_A GTP-binding protein GEM 96.7 0.0003 1E-08 47.0 0.2 49 5-54 113-170 (192)
301 2cxx_A Probable GTP-binding pr 96.7 0.00021 7E-09 47.0 -0.6 49 5-54 121-182 (190)
302 3tr0_A Guanylate kinase, GMP k 96.7 0.00079 2.7E-08 45.0 2.3 21 72-92 9-29 (205)
303 3sjy_A Translation initiation 96.6 0.00035 1.2E-08 52.2 0.4 48 6-54 129-190 (403)
304 3clv_A RAB5 protein, putative; 96.6 0.00028 9.6E-09 46.5 -0.1 49 5-54 146-202 (208)
305 4gzl_A RAS-related C3 botulinu 96.6 0.00014 4.9E-09 48.9 -1.6 48 5-53 133-202 (204)
306 3a00_A Guanylate kinase, GMP k 96.6 0.00079 2.7E-08 44.7 2.1 20 73-92 4-23 (186)
307 2o52_A RAS-related protein RAB 96.6 0.00024 8.1E-09 47.6 -0.6 49 5-54 129-186 (200)
308 1s96_A Guanylate kinase, GMP k 96.6 0.00087 3E-08 46.1 2.3 22 72-93 18-39 (219)
309 2hxs_A RAB-26, RAS-related pro 96.6 0.00026 8.8E-09 46.0 -0.4 48 6-54 114-171 (178)
310 4gp7_A Metallophosphoesterase; 96.6 0.00071 2.4E-08 44.5 1.7 19 72-90 11-29 (171)
311 3qq5_A Small GTP-binding prote 96.6 0.00053 1.8E-08 51.8 1.2 50 4-54 138-194 (423)
312 1znw_A Guanylate kinase, GMP k 96.6 0.00089 3E-08 45.2 2.2 21 72-92 22-42 (207)
313 2h57_A ADP-ribosylation factor 96.6 0.00038 1.3E-08 46.0 0.3 49 5-54 125-185 (190)
314 1ex7_A Guanylate kinase; subst 96.6 0.00095 3.2E-08 44.9 2.2 20 73-92 4-23 (186)
315 3a1s_A Iron(II) transport prot 96.6 0.00014 4.8E-09 51.2 -2.0 50 4-54 108-165 (258)
316 1z6g_A Guanylate kinase; struc 96.6 0.00094 3.2E-08 45.7 2.2 21 72-92 25-45 (218)
317 3cpj_B GTP-binding protein YPT 96.6 0.00027 9.4E-09 48.1 -0.6 49 5-54 117-174 (223)
318 3tau_A Guanylate kinase, GMP k 96.6 0.001 3.5E-08 45.1 2.3 22 72-93 10-31 (208)
319 1wf3_A GTP-binding protein; GT 96.5 0.00018 6E-09 51.9 -1.8 48 6-54 117-171 (301)
320 3c8u_A Fructokinase; YP_612366 96.5 0.0016 5.4E-08 44.0 3.1 23 70-92 22-44 (208)
321 1ksh_A ARF-like protein 2; sma 96.5 0.00036 1.2E-08 45.8 -0.2 49 5-54 118-178 (186)
322 2qor_A Guanylate kinase; phosp 96.5 0.0012 4E-08 44.5 2.3 21 72-92 14-34 (204)
323 2atx_A Small GTP binding prote 96.5 0.00057 1.9E-08 45.2 0.7 48 6-54 122-191 (194)
324 3ohm_A Guanine nucleotide-bind 96.5 0.0019 6.5E-08 47.2 3.5 40 87-131 132-178 (327)
325 2yc2_C IFT27, small RAB-relate 96.5 0.00036 1.2E-08 46.5 -0.4 49 5-54 131-190 (208)
326 2wjg_A FEOB, ferrous iron tran 96.5 0.00015 5.2E-09 47.7 -2.2 50 4-54 110-167 (188)
327 3i8s_A Ferrous iron transport 96.5 0.00014 4.8E-09 51.6 -2.6 49 5-54 111-167 (274)
328 1knq_A Gluconate kinase; ALFA/ 96.5 0.0018 6.1E-08 42.3 3.0 22 71-92 9-30 (175)
329 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.00025 8.7E-09 46.3 -1.3 48 6-54 109-178 (186)
330 2qu8_A Putative nucleolar GTP- 96.5 0.00038 1.3E-08 47.6 -0.5 48 6-54 142-203 (228)
331 1s0u_A EIF-2-gamma, translatio 96.5 0.00095 3.3E-08 49.9 1.7 48 7-55 136-197 (408)
332 1kag_A SKI, shikimate kinase I 96.5 0.0014 4.7E-08 42.7 2.3 21 72-92 6-26 (173)
333 2wwf_A Thymidilate kinase, put 96.5 0.0019 6.4E-08 43.3 3.0 23 70-92 10-32 (212)
334 3fb4_A Adenylate kinase; psych 96.4 0.0013 4.6E-08 44.3 2.3 22 71-92 1-22 (216)
335 3kb2_A SPBC2 prophage-derived 96.4 0.0014 5E-08 42.3 2.4 21 72-92 3-23 (173)
336 3p32_A Probable GTPase RV1496/ 96.4 0.0016 5.5E-08 47.8 2.8 24 69-92 78-101 (355)
337 2bbw_A Adenylate kinase 4, AK4 96.4 0.0014 4.8E-08 45.4 2.4 21 71-91 28-48 (246)
338 3o47_A ADP-ribosylation factor 96.4 0.00059 2E-08 49.7 0.4 49 5-54 265-325 (329)
339 2lkc_A Translation initiation 96.4 0.0002 6.7E-09 46.6 -2.0 50 4-54 105-169 (178)
340 3dl0_A Adenylate kinase; phosp 96.4 0.0015 5E-08 44.2 2.3 22 71-92 1-22 (216)
341 2p5s_A RAS and EF-hand domain 96.4 0.00036 1.2E-08 46.5 -0.7 49 5-54 132-195 (199)
342 3c5c_A RAS-like protein 12; GD 96.4 0.00029 9.9E-09 46.6 -1.3 49 5-54 126-184 (187)
343 2iwr_A Centaurin gamma 1; ANK 96.4 0.00048 1.6E-08 44.8 -0.2 49 5-54 107-167 (178)
344 1ly1_A Polynucleotide kinase; 96.4 0.0015 5.1E-08 42.6 2.2 21 72-92 4-24 (181)
345 3lw7_A Adenylate kinase relate 96.4 0.0016 5.4E-08 42.0 2.3 19 72-90 3-21 (179)
346 3bwd_D RAC-like GTP-binding pr 96.4 0.00022 7.4E-09 46.5 -2.0 48 6-54 112-179 (182)
347 3b1v_A Ferrous iron uptake tra 96.4 0.00034 1.2E-08 49.7 -1.2 49 5-54 106-162 (272)
348 3ihw_A Centg3; RAS, centaurin, 96.4 0.00069 2.4E-08 44.8 0.4 49 5-54 118-178 (184)
349 2j41_A Guanylate kinase; GMP, 96.4 0.0016 5.4E-08 43.5 2.2 22 72-93 8-29 (207)
350 2gco_A H9, RHO-related GTP-bin 96.3 0.00051 1.7E-08 45.9 -0.3 47 6-53 129-197 (201)
351 2jaq_A Deoxyguanosine kinase; 96.3 0.0018 6.2E-08 43.0 2.5 21 72-92 2-22 (205)
352 2j1l_A RHO-related GTP-binding 96.3 0.00035 1.2E-08 47.3 -1.2 49 5-54 137-207 (214)
353 2bdt_A BH3686; alpha-beta prot 96.3 0.0017 5.9E-08 42.9 2.2 21 72-92 4-24 (189)
354 2qm8_A GTPase/ATPase; G protei 96.3 0.0021 7.2E-08 47.0 2.8 23 70-92 55-77 (337)
355 2q3h_A RAS homolog gene family 96.3 0.00036 1.2E-08 46.5 -1.3 48 6-54 124-193 (201)
356 1qhx_A CPT, protein (chloramph 96.3 0.0018 6.3E-08 42.2 2.2 21 72-92 5-25 (178)
357 2fv8_A H6, RHO-related GTP-bin 96.3 0.00056 1.9E-08 45.9 -0.3 48 6-54 129-198 (207)
358 4eun_A Thermoresistant glucoki 96.3 0.0019 6.4E-08 43.3 2.3 22 71-92 30-51 (200)
359 1uf9_A TT1252 protein; P-loop, 96.3 0.0023 7.7E-08 42.6 2.7 26 68-93 6-31 (203)
360 3vaa_A Shikimate kinase, SK; s 96.3 0.0021 7.2E-08 43.0 2.5 21 72-92 27-47 (199)
361 1nks_A Adenylate kinase; therm 96.3 0.0022 7.7E-08 42.1 2.6 21 72-92 3-23 (194)
362 3lvq_E ARF-GAP with SH3 domain 96.3 0.00072 2.5E-08 51.6 0.1 49 5-54 422-482 (497)
363 3ec2_A DNA replication protein 96.3 0.0015 5.2E-08 42.9 1.7 21 72-92 40-60 (180)
364 1htw_A HI0065; nucleotide-bind 96.3 0.002 6.7E-08 42.1 2.2 22 72-93 35-56 (158)
365 2cdn_A Adenylate kinase; phosp 96.3 0.0024 8.3E-08 42.7 2.7 25 68-92 18-42 (201)
366 1jbk_A CLPB protein; beta barr 96.2 0.0021 7.2E-08 41.8 2.3 21 72-92 45-65 (195)
367 3t61_A Gluconokinase; PSI-biol 96.2 0.0021 7E-08 43.1 2.2 22 71-92 19-40 (202)
368 1yrb_A ATP(GTP)binding protein 96.2 0.0039 1.3E-07 43.2 3.7 27 65-91 9-35 (262)
369 3cm0_A Adenylate kinase; ATP-b 96.2 0.0028 9.7E-08 41.6 2.8 22 70-91 4-25 (186)
370 3tif_A Uncharacterized ABC tra 96.2 0.0019 6.5E-08 44.8 2.0 21 72-92 33-53 (235)
371 2if2_A Dephospho-COA kinase; a 96.2 0.0022 7.7E-08 42.8 2.3 21 72-92 3-23 (204)
372 1np6_A Molybdopterin-guanine d 96.2 0.0023 7.9E-08 42.5 2.3 21 72-92 8-28 (174)
373 3asz_A Uridine kinase; cytidin 96.2 0.0026 9E-08 42.7 2.5 22 71-92 7-28 (211)
374 2i3b_A HCR-ntpase, human cance 96.1 0.0021 7.3E-08 43.2 1.9 21 72-92 3-23 (189)
375 1kht_A Adenylate kinase; phosp 96.1 0.0028 9.4E-08 41.7 2.5 22 71-92 4-25 (192)
376 3lnc_A Guanylate kinase, GMP k 96.1 0.0021 7.1E-08 44.0 1.9 20 72-91 29-48 (231)
377 1e4v_A Adenylate kinase; trans 96.1 0.0024 8.1E-08 43.3 2.2 22 71-92 1-22 (214)
378 2pcj_A ABC transporter, lipopr 96.1 0.0021 7.3E-08 44.2 2.0 22 72-93 32-53 (224)
379 3uie_A Adenylyl-sulfate kinase 96.1 0.0024 8.2E-08 42.8 2.2 22 71-92 26-47 (200)
380 3sr0_A Adenylate kinase; phosp 96.1 0.0026 9E-08 43.3 2.4 22 71-92 1-22 (206)
381 4a74_A DNA repair and recombin 96.1 0.0023 7.7E-08 43.3 2.0 21 72-92 27-47 (231)
382 1cke_A CK, MSSA, protein (cyti 96.1 0.0027 9.2E-08 43.1 2.4 22 71-92 6-27 (227)
383 2rhm_A Putative kinase; P-loop 96.1 0.0029 9.9E-08 41.7 2.5 22 71-92 6-27 (193)
384 2aka_B Dynamin-1; fusion prote 96.1 0.0012 4.3E-08 46.6 0.7 48 4-52 190-249 (299)
385 2ehv_A Hypothetical protein PH 96.1 0.0025 8.4E-08 43.7 2.2 20 72-91 32-51 (251)
386 3trf_A Shikimate kinase, SK; a 96.1 0.0029 9.8E-08 41.6 2.3 21 72-92 7-27 (185)
387 2pt5_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 40.7 2.5 21 72-92 2-22 (168)
388 3b85_A Phosphate starvation-in 96.1 0.003 1E-07 43.1 2.4 22 72-93 24-45 (208)
389 3gee_A MNME, tRNA modification 96.1 0.0011 3.7E-08 50.8 0.2 49 6-55 343-397 (476)
390 3dpu_A RAB family protein; roc 96.1 0.0014 4.6E-08 50.7 0.7 49 5-54 149-206 (535)
391 2onk_A Molybdate/tungstate ABC 96.0 0.0028 9.4E-08 44.2 2.2 22 72-93 26-47 (240)
392 1b0u_A Histidine permease; ABC 96.0 0.0026 8.9E-08 44.9 2.0 22 72-93 34-55 (262)
393 2eyu_A Twitching motility prot 96.0 0.0029 9.9E-08 44.6 2.2 21 72-92 27-47 (261)
394 1ukz_A Uridylate kinase; trans 96.0 0.0047 1.6E-07 41.2 3.2 22 70-91 15-36 (203)
395 1y63_A LMAJ004144AAA protein; 96.0 0.0038 1.3E-07 41.3 2.7 23 70-92 10-32 (184)
396 2kjq_A DNAA-related protein; s 96.0 0.0032 1.1E-07 40.6 2.2 21 72-92 38-58 (149)
397 2e87_A Hypothetical protein PH 96.0 0.001 3.4E-08 48.8 -0.3 48 6-54 280-334 (357)
398 2cbz_A Multidrug resistance-as 96.0 0.0032 1.1E-07 43.7 2.2 21 72-92 33-53 (237)
399 3tr5_A RF-3, peptide chain rel 96.0 0.0011 3.9E-08 51.3 -0.1 60 31-91 253-321 (528)
400 2ff7_A Alpha-hemolysin translo 96.0 0.0032 1.1E-07 44.0 2.2 22 72-93 37-58 (247)
401 3gfo_A Cobalt import ATP-bindi 96.0 0.0029 1E-07 45.0 2.0 21 72-92 36-56 (275)
402 2f6r_A COA synthase, bifunctio 96.0 0.0054 1.9E-07 43.5 3.4 23 69-91 74-96 (281)
403 1mv5_A LMRA, multidrug resista 96.0 0.0033 1.1E-07 43.7 2.3 22 72-93 30-51 (243)
404 2v9p_A Replication protein E1; 96.0 0.0034 1.2E-07 45.4 2.4 21 72-92 128-148 (305)
405 2fh5_B SR-beta, signal recogni 95.9 0.0021 7.2E-08 43.1 1.2 17 5-21 114-130 (214)
406 2ywe_A GTP-binding protein LEP 95.9 0.0027 9.4E-08 49.9 2.0 52 4-56 123-184 (600)
407 1sgw_A Putative ABC transporte 95.9 0.0031 1.1E-07 43.2 2.0 22 72-93 37-58 (214)
408 1jjv_A Dephospho-COA kinase; P 95.9 0.0042 1.4E-07 41.6 2.6 22 71-92 3-24 (206)
409 1g6h_A High-affinity branched- 95.9 0.003 1E-07 44.3 2.0 22 72-93 35-56 (257)
410 1lw7_A Transcriptional regulat 95.9 0.0027 9.3E-08 46.6 1.8 23 70-92 170-192 (365)
411 1aky_A Adenylate kinase; ATP:A 95.9 0.0038 1.3E-07 42.3 2.4 22 71-92 5-26 (220)
412 2plr_A DTMP kinase, probable t 95.9 0.0043 1.5E-07 41.4 2.6 22 71-92 5-26 (213)
413 4fn5_A EF-G 1, elongation fact 95.9 0.012 4.2E-07 47.0 5.6 24 68-91 11-34 (709)
414 1zd8_A GTP:AMP phosphotransfer 95.9 0.0035 1.2E-07 42.8 2.2 22 71-92 8-29 (227)
415 4g1u_C Hemin import ATP-bindin 95.9 0.0031 1.1E-07 44.6 2.0 22 72-93 39-60 (266)
416 3k53_A Ferrous iron transport 95.9 0.00037 1.3E-08 49.1 -2.8 47 7-54 110-164 (271)
417 3tlx_A Adenylate kinase 2; str 95.9 0.0044 1.5E-07 43.0 2.7 23 70-92 29-51 (243)
418 1tev_A UMP-CMP kinase; ploop, 95.9 0.0045 1.5E-07 40.7 2.6 21 71-91 4-24 (196)
419 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0035 1.2E-07 43.8 2.1 22 72-93 31-52 (250)
420 2zu0_C Probable ATP-dependent 95.9 0.0036 1.2E-07 44.2 2.2 22 72-93 48-69 (267)
421 2olj_A Amino acid ABC transpor 95.9 0.0034 1.2E-07 44.4 2.0 22 72-93 52-73 (263)
422 2qt1_A Nicotinamide riboside k 95.9 0.006 2.1E-07 40.9 3.2 23 70-92 21-43 (207)
423 2pze_A Cystic fibrosis transme 95.9 0.0039 1.3E-07 43.0 2.3 22 72-93 36-57 (229)
424 2vli_A Antibiotic resistance p 95.9 0.0036 1.2E-07 40.9 2.0 21 71-91 6-26 (183)
425 1gvn_B Zeta; postsegregational 95.9 0.0055 1.9E-07 43.7 3.1 23 70-92 33-55 (287)
426 2xb4_A Adenylate kinase; ATP-b 95.9 0.0042 1.4E-07 42.4 2.4 21 72-92 2-22 (223)
427 3c5h_A Glucocorticoid receptor 95.9 0.00079 2.7E-08 47.1 -1.3 48 5-53 197-252 (255)
428 1xzp_A Probable tRNA modificat 95.9 0.0013 4.3E-08 50.5 -0.3 48 6-54 350-403 (482)
429 1ji0_A ABC transporter; ATP bi 95.9 0.0034 1.2E-07 43.6 2.0 22 72-93 34-55 (240)
430 1ixz_A ATP-dependent metallopr 95.9 0.0038 1.3E-07 43.2 2.2 20 73-92 52-71 (254)
431 2qi9_C Vitamin B12 import ATP- 95.8 0.0036 1.2E-07 43.9 2.0 22 72-93 28-49 (249)
432 1kk1_A EIF2gamma; initiation o 95.8 0.0014 4.7E-08 49.0 -0.1 48 7-55 138-199 (410)
433 2ixe_A Antigen peptide transpo 95.8 0.0035 1.2E-07 44.4 2.0 22 72-93 47-68 (271)
434 2p65_A Hypothetical protein PF 95.8 0.0032 1.1E-07 40.9 1.6 21 72-92 45-65 (187)
435 2p67_A LAO/AO transport system 95.8 0.0046 1.6E-07 45.1 2.6 23 70-92 56-78 (341)
436 2ghi_A Transport protein; mult 95.8 0.004 1.4E-07 43.8 2.2 21 72-92 48-68 (260)
437 1via_A Shikimate kinase; struc 95.8 0.0037 1.3E-07 40.8 1.9 21 72-92 6-26 (175)
438 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0042 1.4E-07 41.9 2.2 21 72-92 25-45 (235)
439 3be4_A Adenylate kinase; malar 95.8 0.0043 1.5E-07 42.1 2.3 23 70-92 5-27 (217)
440 1vpl_A ABC transporter, ATP-bi 95.8 0.0039 1.3E-07 43.9 2.0 22 72-93 43-64 (256)
441 2v54_A DTMP kinase, thymidylat 95.8 0.005 1.7E-07 40.9 2.5 22 71-92 5-26 (204)
442 4ido_A Atlastin-1; GTPase, GTP 95.8 0.013 4.5E-07 44.6 5.0 61 70-130 67-150 (457)
443 2yvu_A Probable adenylyl-sulfa 95.8 0.0067 2.3E-07 40.0 3.1 23 70-92 13-35 (186)
444 2ihy_A ABC transporter, ATP-bi 95.8 0.0044 1.5E-07 44.1 2.3 22 72-93 49-70 (279)
445 3iij_A Coilin-interacting nucl 95.7 0.0045 1.5E-07 40.6 2.1 21 72-92 13-33 (180)
446 2x8a_A Nuclear valosin-contain 95.7 0.0045 1.6E-07 43.8 2.2 20 73-92 47-66 (274)
447 2f1r_A Molybdopterin-guanine d 95.7 0.0019 6.5E-08 42.8 0.2 21 72-92 4-24 (171)
448 3aez_A Pantothenate kinase; tr 95.7 0.0046 1.6E-07 44.7 2.3 24 69-92 89-112 (312)
449 2pbr_A DTMP kinase, thymidylat 95.7 0.0053 1.8E-07 40.4 2.4 21 72-92 2-22 (195)
450 3bos_A Putative DNA replicatio 95.7 0.0052 1.8E-07 41.6 2.4 21 72-92 54-74 (242)
451 2nq2_C Hypothetical ABC transp 95.7 0.0043 1.5E-07 43.5 2.0 22 72-93 33-54 (253)
452 1rj9_A FTSY, signal recognitio 95.7 0.0047 1.6E-07 44.5 2.2 22 71-92 103-124 (304)
453 2yz2_A Putative ABC transporte 95.7 0.0044 1.5E-07 43.8 2.0 22 72-93 35-56 (266)
454 3zvr_A Dynamin-1; hydrolase, D 95.7 0.0026 8.8E-08 51.4 0.9 49 3-52 214-274 (772)
455 1zak_A Adenylate kinase; ATP:A 95.7 0.004 1.4E-07 42.3 1.7 22 71-92 6-27 (222)
456 2ze6_A Isopentenyl transferase 95.7 0.0051 1.7E-07 43.0 2.2 21 72-92 3-23 (253)
457 2z0h_A DTMP kinase, thymidylat 95.6 0.0058 2E-07 40.3 2.4 21 72-92 2-22 (197)
458 2c95_A Adenylate kinase 1; tra 95.6 0.0052 1.8E-07 40.6 2.1 22 71-92 10-31 (196)
459 1bif_A 6-phosphofructo-2-kinas 95.6 0.0061 2.1E-07 46.3 2.7 25 69-93 38-62 (469)
460 1qf9_A UMP/CMP kinase, protein 95.6 0.0074 2.5E-07 39.6 2.8 22 71-92 7-28 (194)
461 2pjz_A Hypothetical protein ST 95.6 0.0056 1.9E-07 43.3 2.3 22 72-93 32-53 (263)
462 1zcb_A G alpha I/13; GTP-bindi 95.6 0.006 2E-07 45.1 2.5 23 68-90 31-53 (362)
463 1nn5_A Similar to deoxythymidy 95.6 0.0057 2E-07 40.9 2.2 23 70-92 9-31 (215)
464 1ak2_A Adenylate kinase isoenz 95.6 0.0064 2.2E-07 41.7 2.5 23 70-92 16-38 (233)
465 1in4_A RUVB, holliday junction 95.6 0.0053 1.8E-07 44.5 2.2 21 72-92 53-73 (334)
466 2cvh_A DNA repair and recombin 95.6 0.0057 2E-07 41.0 2.2 21 72-92 22-42 (220)
467 1zo1_I IF2, translation initia 95.6 0.0076 2.6E-07 46.4 3.1 49 4-53 101-164 (501)
468 3geh_A MNME, tRNA modification 95.6 0.0035 1.2E-07 47.8 1.2 49 6-55 330-383 (462)
469 2xtz_A Guanine nucleotide-bind 95.5 0.0074 2.5E-07 44.5 2.9 36 95-131 146-194 (354)
470 1iy2_A ATP-dependent metallopr 95.5 0.0058 2E-07 43.0 2.2 20 73-92 76-95 (278)
471 2bwj_A Adenylate kinase 5; pho 95.5 0.0063 2.2E-07 40.2 2.3 22 71-92 13-34 (199)
472 1njg_A DNA polymerase III subu 95.5 0.0061 2.1E-07 40.9 2.2 21 72-92 47-67 (250)
473 3b9q_A Chloroplast SRP recepto 95.5 0.006 2E-07 43.9 2.3 22 71-92 101-122 (302)
474 1odf_A YGR205W, hypothetical 3 95.5 0.0082 2.8E-07 43.0 3.0 23 69-91 30-52 (290)
475 2jeo_A Uridine-cytidine kinase 95.5 0.0076 2.6E-07 41.7 2.7 22 71-92 26-47 (245)
476 2chg_A Replication factor C sm 95.5 0.0063 2.1E-07 40.4 2.2 20 73-92 41-60 (226)
477 1cr0_A DNA primase/helicase; R 95.5 0.0057 1.9E-07 43.4 2.0 22 72-93 37-58 (296)
478 3fvq_A Fe(3+) IONS import ATP- 95.5 0.0055 1.9E-07 45.3 2.0 22 72-93 32-53 (359)
479 2w58_A DNAI, primosome compone 95.5 0.0063 2.2E-07 40.5 2.2 22 71-92 55-76 (202)
480 3e70_C DPA, signal recognition 95.5 0.0061 2.1E-07 44.4 2.2 23 70-92 129-151 (328)
481 1e6c_A Shikimate kinase; phosp 95.5 0.0066 2.3E-07 39.3 2.2 21 72-92 4-24 (173)
482 1lv7_A FTSH; alpha/beta domain 95.5 0.0065 2.2E-07 42.1 2.3 21 72-92 47-67 (257)
483 1rz3_A Hypothetical protein rb 95.5 0.0081 2.8E-07 40.3 2.7 23 70-92 22-44 (201)
484 1n0w_A DNA repair protein RAD5 95.5 0.0065 2.2E-07 41.4 2.2 21 72-92 26-46 (243)
485 3p32_A Probable GTPase RV1496/ 95.5 0.0014 4.9E-08 48.0 -1.2 48 6-54 217-282 (355)
486 2p5t_B PEZT; postsegregational 95.5 0.0066 2.3E-07 42.3 2.3 23 70-92 32-54 (253)
487 3j2k_7 ERF3, eukaryotic polype 95.5 0.0056 1.9E-07 46.2 2.0 43 5-48 153-217 (439)
488 3jvv_A Twitching mobility prot 95.5 0.0063 2.2E-07 44.8 2.2 21 72-92 125-145 (356)
489 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0078 2.7E-07 42.1 2.6 22 71-92 5-26 (260)
490 1z47_A CYSA, putative ABC-tran 95.4 0.0063 2.2E-07 44.9 2.1 22 72-93 43-64 (355)
491 2bbs_A Cystic fibrosis transme 95.4 0.0064 2.2E-07 43.6 2.1 22 72-93 66-87 (290)
492 1xjc_A MOBB protein homolog; s 95.4 0.0075 2.6E-07 39.9 2.2 21 72-92 6-26 (169)
493 2j37_W Signal recognition part 95.4 0.0088 3E-07 46.1 2.9 23 69-91 100-122 (504)
494 3rlf_A Maltose/maltodextrin im 95.4 0.0068 2.3E-07 45.2 2.2 22 72-93 31-52 (381)
495 2iyv_A Shikimate kinase, SK; t 95.4 0.0071 2.4E-07 39.7 2.1 21 72-92 4-24 (184)
496 2yyz_A Sugar ABC transporter, 95.4 0.0067 2.3E-07 44.8 2.1 22 72-93 31-52 (359)
497 2it1_A 362AA long hypothetical 95.4 0.0069 2.4E-07 44.8 2.2 22 72-93 31-52 (362)
498 2hf9_A Probable hydrogenase ni 95.4 0.001 3.4E-08 45.1 -2.1 48 6-54 164-222 (226)
499 2pez_A Bifunctional 3'-phospho 95.4 0.0096 3.3E-07 38.9 2.7 22 71-92 6-27 (179)
500 1g29_1 MALK, maltose transport 95.3 0.0071 2.4E-07 44.9 2.1 22 72-93 31-52 (372)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=1.6e-22 Score=153.32 Aligned_cols=121 Identities=22% Similarity=0.320 Sum_probs=83.1
Q ss_pred CccCCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEE
Q psy10878 2 SYKAKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVI 76 (131)
Q Consensus 2 ~~~~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vv 76 (131)
+++.++|+++|+||+|+........+| ++++++||.++.| +.++++.+.+.+ +.... .......+|++++
T Consensus 107 l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~g-v~~L~~~i~~~l--~~~~~--~~~~~~~~ki~lv 181 (436)
T 2hjg_A 107 LYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLG-LGDLLDAVAEHF--KNIPE--TKYNEEVIQFCLI 181 (436)
T ss_dssp HTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBT-HHHHHHHHHHTG--GGCCS--SCCCTTCEEEEEE
T ss_pred HHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCC-hHHHHHHHHHhc--Ccccc--ccccccCcEEEEE
Confidence 466789999999999997543333333 6899999999999 999999988877 22111 1123456899999
Q ss_pred cCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 77 GDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
|.+|||||||+|++++..+. ....++++.+.....+.+ ++. .++||||||+
T Consensus 182 G~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~--~~~l~DT~G~ 233 (436)
T 2hjg_A 182 GRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQ--EFVIVDTAGM 233 (436)
T ss_dssp CSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-TTE--EEEETTHHHH
T ss_pred cCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCe--EEEEEECCCc
Confidence 99999999999999987663 333455555655666776 665 4789999997
No 2
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=3.9e-21 Score=146.39 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=80.6
Q ss_pred CccCCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEE
Q psy10878 2 SYKAKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVI 76 (131)
Q Consensus 2 ~~~~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vv 76 (131)
+++.++|+++|+||+|+.+......++ ++++++||.++.| +.++++.+.+.+.. ... .......+|++++
T Consensus 127 l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~g-v~~L~~~i~~~l~~--~~~--~~~~~~~~ki~iv 201 (456)
T 4dcu_A 127 LYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLG-LGDLLDAVAEHFKN--IPE--TKYNEEVIQFCLI 201 (456)
T ss_dssp HTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTT-HHHHHHHHHTTGGG--SCS--SCCCTTCEEEEEE
T ss_pred HHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccc-hHHHHHHHHhhccc--ccc--cccccccceeEEe
Confidence 456799999999999997654333333 6789999999999 99999988877632 111 1224457899999
Q ss_pred cCCCCCchhhhhhhhhCc-CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 77 GDPTVGKTSFVQRYVQNT-FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 77 G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
|.+|||||||++++++.. +.....++++.+.....+.+ ++. .++||||||
T Consensus 202 G~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~--~~~l~DT~G 252 (456)
T 4dcu_A 202 GRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQ--EFVIVDTAG 252 (456)
T ss_dssp CSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-TTE--EEEETTGGG
T ss_pred cCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCc--eEEEEECCC
Confidence 999999999999999664 33344455555555566666 665 688999999
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=5.4e-21 Score=145.00 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=83.6
Q ss_pred CccCCCcEEeeccCCCcccc-cccc-ccc-----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEE
Q psy10878 2 SYKAKKPILLPSASEDPSID-NWDK-ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVI 74 (131)
Q Consensus 2 ~~~~~kp~vlv~NK~Dl~~~-~~~~-~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 74 (131)
+++.++|+++|+||+|+.+. .... .+| ++++++||+++.| +.++++.+.+.+................+|++
T Consensus 106 l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~g-v~~L~~~i~~~l~~~~~~~~~~~~~~~~~kva 184 (439)
T 1mky_A 106 LRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNIN-LDTMLETIIKKLEEKGLDLESKPEITDAIKVA 184 (439)
T ss_dssp HHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBS-HHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEE
T ss_pred HHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCC-HHHHHHHHHHhcccccccchhccccccCceEE
Confidence 34568999999999998543 2112 222 5789999999999 99999998776621110000001123568999
Q ss_pred EEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 75 VIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 75 vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
++|.+|||||||+|++++..+. ....|+++.+.....+.+ +|. .+.+|||+|+
T Consensus 185 ivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~--~~~l~Dt~G~ 238 (439)
T 1mky_A 185 IVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGR--KYVFVDTAGL 238 (439)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTE--EEEESSCSCC
T ss_pred EECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCE--EEEEEECCCC
Confidence 9999999999999999987642 233344444554556666 776 4689999997
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.80 E-value=5.4e-20 Score=127.93 Aligned_cols=64 Identities=39% Similarity=0.848 Sum_probs=48.6
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.+.+||+++|++|||||||++||+.+.|...|.||++.++..+.+.+ ++..+.++||||||||
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLE 73 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTT
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCch
Confidence 556799999999999999999999999999999999999998888887 8889999999999997
No 5
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.67 E-value=7.8e-18 Score=121.30 Aligned_cols=120 Identities=20% Similarity=0.321 Sum_probs=73.1
Q ss_pred CCCcEEeeccCCCcccccccc---ccc----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEEc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIG 77 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG 77 (131)
.++|+++|+||+|+.+..... ..+ .+++++|+.++.| +.++++.+.+.+.....+..........++++++|
T Consensus 49 ~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~g-i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG 127 (282)
T 1puj_A 49 KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG-LNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIG 127 (282)
T ss_dssp SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT-GGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEE
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCccc-HHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEe
Confidence 479999999999997643211 111 3567899999999 99998877665421000000011234568999999
Q ss_pred CCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 78 DPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 78 ~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.+|||||||+|++.+.... ...++.+.+.....+.+ +. .+.+|||||-
T Consensus 128 ~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~-~~---~~~l~DtpG~ 175 (282)
T 1puj_A 128 IPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKV-GK---ELELLDTPGI 175 (282)
T ss_dssp STTSSHHHHHHHHHTSCCC-------------CCEEE-TT---TEEEEECCCC
T ss_pred cCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEe-CC---CEEEEECcCc
Confidence 9999999999999876532 12222222222223333 33 3789999994
No 6
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.66 E-value=9.9e-18 Score=119.60 Aligned_cols=102 Identities=13% Similarity=0.234 Sum_probs=67.7
Q ss_pred CCcEEeeccCCCcccccccc---ccc----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEEEcC
Q psy10878 6 KKPILLPSASEDPSIDNWDK---ASW----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIGD 78 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~---~~~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~ 78 (131)
++|+++|+||+|+.+..... ..+ ..+ ++|+.++.| +.++++.+...+ ++++++|.
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~g-i~~L~~~l~~~~----------------~~v~~vG~ 107 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPR-KVLLKKLSFDRL----------------ARVLIVGV 107 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCH-HHHHHHHCCCTT----------------CEEEEEES
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcC-HHHHHHHHHHhh----------------hheEEeCC
Confidence 79999999999998653211 112 234 999999999 888876655442 58999999
Q ss_pred CCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 79 PTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 79 ~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+|||||||+|++.+.... ...++.|.+.....+.. +. .+++|||||.
T Consensus 108 ~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~-~~---~~~l~DtpG~ 154 (262)
T 3cnl_A 108 PNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSL-EN---GVKILDTPGI 154 (262)
T ss_dssp TTSSHHHHHHHHHTTCC-----------CCSCEEEC-TT---SCEEESSCEE
T ss_pred CCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEe-CC---CEEEEECCCc
Confidence 999999999999976553 22344444333333333 32 3789999995
No 7
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.65 E-value=6e-16 Score=102.00 Aligned_cols=64 Identities=38% Similarity=0.673 Sum_probs=56.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++++++.+...+.+|++.++....+.+ ++..+.+.+|||+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQE 66 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 356789999999999999999999999998888899999988888887 8888999999999985
No 8
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.65 E-value=1.1e-15 Score=102.98 Aligned_cols=67 Identities=43% Similarity=0.833 Sum_probs=59.5
Q ss_pred CCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 64 ~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...+..+||+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQE 82 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCC
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcH
Confidence 445667899999999999999999999999998888899998888788877 7888999999999985
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=6.5e-16 Score=105.78 Aligned_cols=65 Identities=45% Similarity=0.796 Sum_probs=59.2
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|++|||||||+++|+++.+...+.+|++.++....+.+ ++..+.++||||+|++
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQE 86 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 3567899999999999999999999999998888899999998888888 8888999999999985
No 10
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=103.93 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=53.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|++|||||||+++|+++.|...+.+|++..+ ...+.+ ++..+.++||||+||+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETV-DHQPVHLRVMDTADLD 80 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC--
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEE-CCEEEEEEEEECCCCC
Confidence 356779999999999999999999999999888999999887 455666 8888999999999985
No 11
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.64 E-value=1e-15 Score=103.19 Aligned_cols=64 Identities=27% Similarity=0.360 Sum_probs=54.9
Q ss_pred CCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 65 APPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 65 ~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
......+||+++|++|||||||+++|+++.|...+.|| +..+ .+.+.+ ++..+.++||||+|||
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVV-DGQSYLLLIRDEGGPP 78 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEE-TTEEEEEEEEECSSSC
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEE-CCEEEEEEEEECCCCh
Confidence 34667899999999999999999999999998888887 4455 477777 8899999999999986
No 12
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.64 E-value=1.1e-15 Score=101.45 Aligned_cols=64 Identities=44% Similarity=0.751 Sum_probs=54.6
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQE 67 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCG
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCch
Confidence 456789999999999999999999999998888899999988888888 8888999999999985
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=102.87 Aligned_cols=66 Identities=36% Similarity=0.705 Sum_probs=59.1
Q ss_pred CCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 65 APPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 65 ~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
......+||+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLE 85 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEEEEEESCCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCch
Confidence 34667899999999999999999999999998888899999888888877 7888999999999985
No 14
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.63 E-value=7e-16 Score=102.70 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=53.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||+++|+++.+.. +.||++..+ .+.+.+ ++..+.+++|||+||+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLV-DGQTHLVLIREEAGAP 65 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEE-TTEEEEEEEEECSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEE-CCEEEEEEEEECCCCc
Confidence 356899999999999999999999999886 788988666 577777 8888999999999986
No 15
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.63 E-value=1.3e-15 Score=101.90 Aligned_cols=64 Identities=39% Similarity=0.770 Sum_probs=58.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|+++.+...+.++++.++....+.+ ++..+.+++|||+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQE 70 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 456799999999999999999999999998888899998888888887 8888999999999985
No 16
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.63 E-value=3.8e-16 Score=104.44 Aligned_cols=64 Identities=41% Similarity=0.849 Sum_probs=39.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|.++.+...+.||++.++....+.+ ++..+.++||||+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 68 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC----
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCCh
Confidence 356799999999999999999999998888888899999998888888 8888999999999985
No 17
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.63 E-value=9.5e-16 Score=103.52 Aligned_cols=67 Identities=39% Similarity=0.690 Sum_probs=55.3
Q ss_pred CCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 64 ~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+......+||+++|++|||||||+++|.++.+...+.++++.++....+.+ ++..+.++||||+|++
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQE 81 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGG
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCch
Confidence 345678899999999999999999999999998888899998888888887 8888999999999975
No 18
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.63 E-value=4.1e-16 Score=103.59 Aligned_cols=65 Identities=40% Similarity=0.747 Sum_probs=56.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|.++.+...+.||++.++....+.+.++..+.+++|||+||+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 34578999999999999999999999888878889998888888888733467999999999986
No 19
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.63 E-value=1.2e-15 Score=101.17 Aligned_cols=65 Identities=42% Similarity=0.755 Sum_probs=58.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|.+|||||||++++.++.+...+.+|.+.++....+.+ ++..+.+.+|||+|++
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQE 75 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGG
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCCh
Confidence 3567899999999999999999999999998888899998888888887 8888999999999975
No 20
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.63 E-value=1.3e-15 Score=103.86 Aligned_cols=64 Identities=44% Similarity=0.867 Sum_probs=58.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|.++.+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQE 68 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChH
Confidence 456799999999999999999999999998888999999998888888 8888999999999985
No 21
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=105.05 Aligned_cols=65 Identities=42% Similarity=0.796 Sum_probs=49.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|++|||||||+++|.++.+...+.+|++.++....+.+ ++..+.++||||+|++
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQE 89 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCG
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 3567899999999999999999999999998888899998888888888 8888999999999985
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=101.96 Aligned_cols=65 Identities=46% Similarity=0.875 Sum_probs=55.8
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|.+|||||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQE 69 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGG
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCch
Confidence 3567899999999999999999999999888888899999998888888 8888999999999974
No 23
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.62 E-value=8.5e-16 Score=105.45 Aligned_cols=67 Identities=28% Similarity=0.582 Sum_probs=54.8
Q ss_pred CCCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 63 FNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 63 ~~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.......+||+++|++|||||||+++|.++.+...+.||++.++ ...+.+ ++..+.++||||+||+
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSP 87 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEES-SSSEEEEEEEEECCSG
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEE-CCEEEEEEEEeCCCcH
Confidence 334456789999999999999999999999999888899999877 456666 7888999999999985
No 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.62 E-value=1.4e-15 Score=100.03 Aligned_cols=64 Identities=34% Similarity=0.672 Sum_probs=57.6
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...+||+++|.+|||||||+++++++.+...+.++.+.++....+.+ ++..+.+++|||+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 346789999999999999999999999998888899999888888887 7888999999999985
No 25
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.62 E-value=9e-16 Score=100.84 Aligned_cols=63 Identities=44% Similarity=0.857 Sum_probs=56.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|.+|||||||++++.++.+...+.+|++.++....+.+ ++..+.+.+|||+|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQE 65 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGG
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcH
Confidence 35789999999999999999999999998888899998888888887 8888999999999974
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.62 E-value=2.3e-15 Score=100.00 Aligned_cols=63 Identities=32% Similarity=0.582 Sum_probs=55.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...+||+++|.+|||||||+++|+++.+...+.+|++..+. ..+.+ ++..+.+++|||+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQE 68 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCch
Confidence 456789999999999999999999999998889999998875 66666 8888999999999985
No 27
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.62 E-value=2.3e-15 Score=100.45 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=55.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+ ++..+.+++|||+|++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~ 65 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 65 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCch
Confidence 4678999999999999999999999999889999999887 667777 8889999999999986
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=1.7e-15 Score=99.61 Aligned_cols=62 Identities=34% Similarity=0.712 Sum_probs=56.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|.+|||||||+++++++.+...+.|+++.++....+.+ ++..+.+.+|||+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCCh
Confidence 3689999999999999999999999988888899999988888887 8888999999999985
No 29
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.62 E-value=1.3e-15 Score=102.66 Aligned_cols=65 Identities=45% Similarity=0.810 Sum_probs=57.1
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQE 80 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCch
Confidence 3556799999999999999999999999998888899998888888888 8888999999999984
No 30
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.7e-15 Score=101.90 Aligned_cols=65 Identities=38% Similarity=0.738 Sum_probs=58.5
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|.+|||||||++++.++.+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQE 75 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCch
Confidence 3456789999999999999999999999998888999999988888887 8888999999999985
No 31
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=101.24 Aligned_cols=64 Identities=42% Similarity=0.867 Sum_probs=58.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 76 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 457899999999999999999999999998889999999998888888 8888999999999975
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.61 E-value=2.2e-15 Score=99.91 Aligned_cols=64 Identities=39% Similarity=0.865 Sum_probs=57.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...+||+++|.+|||||||+++++++.+...+.++++.++....+.+ ++..+.+.+|||+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQE 74 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcH
Confidence 446799999999999999999999999998888899999888888888 8888999999999975
No 33
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.61 E-value=2.9e-15 Score=98.58 Aligned_cols=63 Identities=33% Similarity=0.656 Sum_probs=57.2
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|.+|||||||++++.++.+...+.++.+.++....+.+ ++..+.+.+|||+|++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCch
Confidence 45789999999999999999999999988888899999888888887 7888999999999974
No 34
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.61 E-value=3.3e-15 Score=99.83 Aligned_cols=64 Identities=33% Similarity=0.528 Sum_probs=56.8
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+ ++..+.+++|||+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCG
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCch
Confidence 355689999999999999999999999999889999999887 666776 8889999999999985
No 35
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=102.98 Aligned_cols=64 Identities=42% Similarity=0.808 Sum_probs=47.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++++++.+...+.++++.++....+.+ ++..+.++||||+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQE 88 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCT
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCc
Confidence 456799999999999999999999999988888899998888888888 8888999999999985
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=102.70 Aligned_cols=65 Identities=48% Similarity=0.831 Sum_probs=51.9
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|.+|||||||+++|.++.+...+.++++.++....+.+ ++..+.++||||+|++
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQE 86 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcH
Confidence 4567899999999999999999999998888888899999998888888 8888999999999985
No 37
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.60 E-value=1.2e-15 Score=100.48 Aligned_cols=62 Identities=40% Similarity=0.863 Sum_probs=49.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|+|||||++++.++.+...+.++++.++....+.+ ++..+.+.+|||+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQE 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCCh
Confidence 4689999999999999999999999998888899998888888887 7888999999999975
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.60 E-value=2.8e-15 Score=99.79 Aligned_cols=65 Identities=29% Similarity=0.563 Sum_probs=57.3
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+...+||+++|.+|+|||||+++++++.+...+.++++.++....+.+ ++..+.++||||+|++
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 72 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSG
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCCh
Confidence 3556799999999999999999999999998888899998888888887 7888999999999985
No 39
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.60 E-value=2.6e-15 Score=102.25 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=56.0
Q ss_pred CCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 64 ~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.......+||+++|.+|||||||+++|.++.+...+.||++.++. ..+.+ ++..+.+.||||+|++
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEV-DGKQVELALWDTAGQE 84 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSG
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEE-CCEEEEEEEEECCCch
Confidence 445678899999999999999999999999998888899988875 44666 8888999999999985
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.60 E-value=3.7e-15 Score=101.31 Aligned_cols=64 Identities=42% Similarity=0.865 Sum_probs=57.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.++||||+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLE 68 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCch
Confidence 456789999999999999999999999998888899999888888877 8888999999999985
No 41
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=2.3e-15 Score=101.81 Aligned_cols=64 Identities=38% Similarity=0.638 Sum_probs=57.3
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQE 83 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSG
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCch
Confidence 467899999999999999999999999988888899999988888877 7788999999999985
No 42
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.60 E-value=1.8e-15 Score=104.31 Aligned_cols=64 Identities=27% Similarity=0.544 Sum_probs=52.7
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|++|||||||+++|+++.+...+.||++.++ ...+.+ ++..+.++||||+|||
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLET-EEQRVELSLWDTSGSP 86 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---CEEEEEEEEECCSG
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEE-CCEEEEEEEEECCCCH
Confidence 345679999999999999999999999999989999999887 456666 7888999999999985
No 43
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.60 E-value=2.2e-15 Score=101.17 Aligned_cols=63 Identities=30% Similarity=0.602 Sum_probs=54.3
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...+||+++|++|||||||+++|.++.+...+.||++..+ ...+.+ ++..+.++||||+||+
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSP 66 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-SSCEEEEEEEEECCSG
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCCh
Confidence 45678999999999999999999999999888899998877 456666 7888999999999985
No 44
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.60 E-value=2.3e-15 Score=102.40 Aligned_cols=64 Identities=45% Similarity=0.821 Sum_probs=56.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++++++.+...+.+|++.++....+.+ ++..+.+.||||+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQE 68 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 446789999999999999999999999998888999999988888887 7888999999999985
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=5.6e-15 Score=98.25 Aligned_cols=64 Identities=42% Similarity=0.757 Sum_probs=55.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|.++.+. ..+.+|++.++....+.+ ++..+.+++|||+|++
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQE 71 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 456899999999999999999999998884 467899999988777777 8888999999999985
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.60 E-value=3.8e-15 Score=100.64 Aligned_cols=63 Identities=33% Similarity=0.649 Sum_probs=55.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|.++.+...+.+|++..+. ..+.+ ++..+.++||||+|||
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKY-KNEEFILHLWDTAGQE 82 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEE-TTEEEEEEEEEECCSG
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEE-CCEEEEEEEEECCCcH
Confidence 457899999999999999999999999998889999998875 45666 8889999999999985
No 47
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=101.68 Aligned_cols=64 Identities=36% Similarity=0.551 Sum_probs=46.5
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+ ++..+.+++|||+|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSV-DGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEE-TTEEEEEEEEECCCST
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCH
Confidence 456789999999999999999999998888888889998766 456666 8888999999999985
No 48
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.5e-15 Score=103.21 Aligned_cols=64 Identities=42% Similarity=0.831 Sum_probs=52.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|.++.+...+.+|++.++....+.+ ++..+.++||||+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQE 73 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTT
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCcc
Confidence 456799999999999999999999999998888899999888888888 8888999999999985
No 49
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.58 E-value=3.6e-15 Score=100.53 Aligned_cols=63 Identities=33% Similarity=0.715 Sum_probs=54.8
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeE----------------------------
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQK---------------------------- 119 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 119 (131)
...+||+++|.+|||||||+++|++..+...+.+|++.++....+.+ ++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence 45789999999999999999999999998889999999988888877 6655
Q ss_pred ---------EEEEEEeCCCCC
Q psy10878 120 ---------IKLQLWDIAGQN 131 (131)
Q Consensus 120 ---------~~l~i~Dt~Gqe 131 (131)
+.+.||||||++
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~ 104 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQE 104 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGG
T ss_pred ccccCccceeEEEEEECCCcH
Confidence 889999999974
No 50
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.58 E-value=2.1e-15 Score=104.07 Aligned_cols=65 Identities=37% Similarity=0.717 Sum_probs=58.2
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|.+|||||||+++|+.+.+...+.++++.++....+.+ ++..+.++||||+|++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQE 75 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChH
Confidence 4567899999999999999999999988888888899998888888877 8888999999999975
No 51
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=102.51 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=52.0
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|.+..+...+.++++.++....+.+ ++..+.+.+|||+||+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCc
Confidence 456799999999999999999999865554445567777777777777 8889999999999985
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.58 E-value=5.9e-15 Score=96.81 Aligned_cols=60 Identities=32% Similarity=0.553 Sum_probs=53.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|.+|||||||++++.++.+...+.+|++..+. ..+.+ ++..+.+++|||+|++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DCQQCMLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES-SSCEEEEEEEEECSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEE-CCEEEEEEEEECCChH
Confidence 589999999999999999999999998888899987764 55666 7788999999999985
No 53
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.58 E-value=9.8e-15 Score=95.50 Aligned_cols=60 Identities=30% Similarity=0.503 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|++|||||||++++.++.+...+.++++..+ ...+.+ ++..+.+++|||+|++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV-DSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEE-CCEEEEEEEEECCCch
Confidence 58999999999999999999999999888888888655 566777 8888999999999985
No 54
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.58 E-value=7.8e-15 Score=97.90 Aligned_cols=61 Identities=38% Similarity=0.611 Sum_probs=53.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+ ++..+.+++|||+|++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE-TTEEEEEEEECCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEE-CCEEEEEEEEECCCCH
Confidence 578999999999999999999999999888889988766 455666 8889999999999985
No 55
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=102.41 Aligned_cols=64 Identities=42% Similarity=0.867 Sum_probs=58.2
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|+++.+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 93 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcH
Confidence 467899999999999999999999999988888899998888888888 8888999999999985
No 56
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.58 E-value=5.2e-15 Score=101.26 Aligned_cols=62 Identities=42% Similarity=0.627 Sum_probs=54.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||+++|.++.+...+.||++..+ ...+.+ ++..+.++||||+|||
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEEC-SSCEEEEEEECCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEE-CCEEEEEEEEECCCcH
Confidence 3578999999999999999999999999888889998776 456666 7888999999999986
No 57
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.58 E-value=6.6e-15 Score=100.09 Aligned_cols=63 Identities=44% Similarity=0.843 Sum_probs=54.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+|++++|++|||||||++++++..+...+.||++.++....+.+ +|..+.+++|||+|++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 65 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCch
Confidence 45789999999999999999999999998888899998888888888 8989999999999975
No 58
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=102.75 Aligned_cols=64 Identities=39% Similarity=0.806 Sum_probs=47.0
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|+++.+...+.+|++.++....+.+ ++..+.++||||+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcH
Confidence 467899999999999999999999999888888899998888888887 8888999999999974
No 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.58 E-value=7.8e-15 Score=98.33 Aligned_cols=64 Identities=39% Similarity=0.705 Sum_probs=55.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeE-EEEEEecCCe---------EEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFA-LKIVKWRDQQ---------KIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~---------~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|.++.+...+.+|++.++. .+.+.+ ++. .+.+++|||+|++
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcH
Confidence 456899999999999999999999999998888899998887 566666 655 7899999999985
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.57 E-value=2.5e-15 Score=99.90 Aligned_cols=65 Identities=42% Similarity=0.794 Sum_probs=50.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|+|||||+++++++.+...+.++++.++....+.+.++..+.+.+|||+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 44578999999999999999999999999888889999888888887733667899999999975
No 61
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=5.1e-15 Score=101.06 Aligned_cols=64 Identities=41% Similarity=0.840 Sum_probs=56.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|++..+...+.++++.++....+.+ ++..+.+.||||+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQE 80 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 445789999999999999999999999988888899998888888887 8888999999999974
No 62
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.57 E-value=5.7e-15 Score=101.62 Aligned_cols=63 Identities=29% Similarity=0.551 Sum_probs=44.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+ ++..+.++||||+||+
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQV-KGKPVHLHIWDTAGQD 93 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEE-TTEEEEEEEEEC----
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCch
Confidence 34579999999999999999999999888888889988766 456666 8888999999999985
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.2e-14 Score=98.40 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=54.1
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+ ++..+.+++|||+|++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~ 87 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATI-DDEVVSMEILDTAGQE 87 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEE-CCEEEEEEEEECCCCC
Confidence 3568999999999999999999999999888889998776 455666 8888999999999986
No 64
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.57 E-value=1.5e-14 Score=98.01 Aligned_cols=64 Identities=42% Similarity=0.792 Sum_probs=58.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....++++++|++|||||||++++++..+...+.||++.++....+.+ +|..+.+++|||+|++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLE 89 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCc
Confidence 456799999999999999999999999998888999999998888888 8888999999999975
No 65
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=8.5e-15 Score=98.84 Aligned_cols=63 Identities=32% Similarity=0.506 Sum_probs=55.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+...+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+ ++..+.++||||+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEES-SSCEEEEEEECCCCSS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCc
Confidence 45779999999999999999999999999888899998776 456666 7888999999999985
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.56 E-value=1.7e-14 Score=96.52 Aligned_cols=61 Identities=31% Similarity=0.525 Sum_probs=52.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|.+|||||||++++.++.+...+.+|++..+ ...+.+ ++..+.+++|||+|++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCC-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEE-CCcEEEEEEEECCCcH
Confidence 578999999999999999999999998888888886554 466666 8889999999999985
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.56 E-value=2.7e-15 Score=103.01 Aligned_cols=65 Identities=46% Similarity=0.810 Sum_probs=56.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCe----------EEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ----------KIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----------~~~l~i~Dt~Gqe 131 (131)
..+..+||+++|++|||||||+++|+++.+...+.+|++.++..+.+.+ ++. .+.++||||+|++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~Dt~G~~ 95 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTAGQE 95 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEESHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEE-CCccccccccCceeEEEEEEECCCcH
Confidence 3567899999999999999999999999898888899999888777777 555 7899999999974
No 68
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.56 E-value=5.6e-15 Score=100.51 Aligned_cols=63 Identities=35% Similarity=0.569 Sum_probs=51.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+ ++..+.++||||+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~ 83 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQD 83 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEECCCcc
Confidence 45689999999999999999999999999988989999877 555655 6777899999999985
No 69
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=97.52 Aligned_cols=63 Identities=30% Similarity=0.539 Sum_probs=54.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||++++.++.+...+.+|++..+ ...+.+ ++..+.+.||||+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQE 73 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEcCCChh
Confidence 44578999999999999999999999999888889988776 456666 8888999999999985
No 70
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.55 E-value=2e-14 Score=94.05 Aligned_cols=60 Identities=32% Similarity=0.582 Sum_probs=51.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|.+|+|||||++++.++.+...+.+|.+..+ ...+.+ ++..+.+.+|||+|++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEE-CCEEEEEEEEECCCcc
Confidence 58999999999999999999999988888888888776 455566 8888999999999985
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=2.2e-14 Score=94.30 Aligned_cols=61 Identities=33% Similarity=0.572 Sum_probs=52.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|.+|||||||+++++++.+...+.++++..+. ..+.. ++..+.+.+|||+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISC-DKSICTLQITDTTGSH 62 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEE-TTEEEEEEEEECCSCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEE-CCEEEEEEEEECCCch
Confidence 3689999999999999999999998888788888887663 44555 7788999999999985
No 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.1e-14 Score=99.50 Aligned_cols=63 Identities=30% Similarity=0.521 Sum_probs=48.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||++++.++.+...+.||++..+. ..+.+ ++..+.+.||||+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQE 84 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEE-TTEEEEEEEEECTTCT
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEE-CCEEEEEEEEECCCcH
Confidence 456789999999999999999999999998888899887774 44666 8888999999999985
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.55 E-value=2.3e-14 Score=96.27 Aligned_cols=64 Identities=30% Similarity=0.476 Sum_probs=52.6
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+....+||+++|.+|||||||+++++++.+...+.+|++..+ ...+.+ ++..+.+.||||+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQE 80 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC--
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEE-CCEEEEEEEEECCChH
Confidence 345679999999999999999999999888888888887666 456666 7888999999999985
No 74
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=96.39 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=46.3
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+ ++..+.+.+|||+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~ 63 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTV-DGEDTTLVVVDTWEAE 63 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEE-TTEEEEEEEECCC---
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEE-CCEEEEEEEEecCCCC
Confidence 4689999999999999999999988776443 56777777777777 8888999999999985
No 75
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.54 E-value=3.1e-14 Score=94.89 Aligned_cols=63 Identities=30% Similarity=0.539 Sum_probs=53.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++++++.+...+.+|++..+ ...+.+ ++..+.+.||||+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQE 77 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEE-CCEEEEEEEEECCCCc
Confidence 34578999999999999999999999999888888888776 455666 7888999999999985
No 76
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.54 E-value=1.5e-14 Score=95.23 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=43.8
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~ 62 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQG 62 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCcc
Confidence 479999999999999999999977776666666667777788887 8889999999999985
No 77
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=6.4e-16 Score=104.37 Aligned_cols=65 Identities=45% Similarity=0.859 Sum_probs=57.4
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|.+|||||||+++|.++.+...+.++.+.++....+.+ ++..+.++||||+|++
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 83 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQE 83 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHH
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChH
Confidence 3567899999999999999999999999988888899888888888877 7777899999999964
No 78
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.53 E-value=3.7e-15 Score=101.25 Aligned_cols=63 Identities=33% Similarity=0.536 Sum_probs=26.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhC--cCCCCccCCceeEeEEEEEEecCCe--EEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQN--TFKKDYKGTVGVDFALKIVKWRDQQ--KIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~--~~~l~i~Dt~Gqe 131 (131)
...+||+++|.+|||||||+++|+++ .+...+.+|++.++....+.+ ++. .+.++||||+|++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEEC-TTSSEEEEEEEEETTTTH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcH
Confidence 46789999999999999999999988 788788899998888888887 776 8999999999984
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.53 E-value=2.1e-14 Score=98.12 Aligned_cols=63 Identities=35% Similarity=0.564 Sum_probs=51.3
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|+++.+...+.+|++..+ ...+.+ ++..+.++||||+|+|
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLE 89 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEEC-C-CEEEEEEEEECCSG
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEE-CCEEEEEEEEECCCch
Confidence 34678999999999999999999999999888888887655 566666 8888999999999985
No 80
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=3.2e-14 Score=96.03 Aligned_cols=62 Identities=31% Similarity=0.578 Sum_probs=53.2
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|.+|||||||+++|.++.+...+.+|++..+. ..+.+ ++..+.+.||||+|++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISC-DKSVCTLQITDTTGSH 67 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEE-TTEEEEEEEEECCGGG
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEE-CCEEEEEEEEeCCChH
Confidence 35689999999999999999999999998888899887664 45555 7888999999999974
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.52 E-value=5.9e-14 Score=91.53 Aligned_cols=60 Identities=30% Similarity=0.482 Sum_probs=52.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|.+|+|||||++++.++.+...+.++++..+ ...+.+ ++..+.+.+|||+|++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI-DGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEE-CCEEEEEEEEECCCch
Confidence 57999999999999999999999988888888887665 456666 7888999999999985
No 82
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.51 E-value=3.7e-15 Score=99.28 Aligned_cols=62 Identities=39% Similarity=0.645 Sum_probs=37.4
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||+++|..+.+...+.||++..+. ..+.+ ++..+.+++|||+||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVV-NGATVNLGLWDTAGQE 67 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-C
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEE-CCEEEEEEEEECCCCh
Confidence 34689999999999999999999999888888899886663 33444 6778889999999986
No 83
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.50 E-value=4.6e-15 Score=110.37 Aligned_cols=107 Identities=24% Similarity=0.334 Sum_probs=70.0
Q ss_pred CCCcEEeeccCCCccccccc---cccc------------CCCCccccccCCcccccccccccccccCCCcccCCCCCCce
Q psy10878 5 AKKPILLPSASEDPSIDNWD---KASW------------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEK 69 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~---~~~~------------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (131)
.++|+++|+||+|+.+.... ..+| .+++++||+++.| +.++++.+.+.. +
T Consensus 95 ~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g-i~~L~~~l~~~~--~------------ 159 (368)
T 3h2y_A 95 GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQG-IAELADAIEYYR--G------------ 159 (368)
T ss_dssp SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTT-HHHHHHHHHHHH--T------------
T ss_pred CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcC-HHHHHhhhhhhc--c------------
Confidence 37999999999999654311 1111 2578999999999 999988776544 1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcC-----CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTF-----KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..+++++|.+|+|||||+|++++... .....+..+.......+.+ +.. +.++||||-
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~-~~~---~~liDtPG~ 221 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL-DEE---SSLYDTPGI 221 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES-SSS---CEEEECCCB
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe-cCC---eEEEeCCCc
Confidence 13699999999999999999986421 1111122222222333444 322 689999994
No 84
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.50 E-value=1e-14 Score=98.09 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=49.2
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCc-----------cCCceeEeEEEEE-EecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDY-----------KGTVGVDFALKIV-KWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~-----------~~t~~~~~~~~~~-~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||++ ++.+.+...+ .||++.++....+ .+ ++..+.++||||+||+
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEV-KGFKTRFHLYTVPGQV 85 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCS-SSCEEEEEEEECCSCC
T ss_pred cccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccc-cCCceEEEEEeCCChH
Confidence 5678999999999999999994 5656666553 4577777655544 44 7788999999999986
No 85
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.50 E-value=5.5e-15 Score=109.97 Aligned_cols=104 Identities=21% Similarity=0.374 Sum_probs=71.5
Q ss_pred CCcEEeeccCCCccccccc---cccc------------CCCCccccccCCcccccccccccccccCCCcccCCCCCCcee
Q psy10878 6 KKPILLPSASEDPSIDNWD---KASW------------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKL 70 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~---~~~~------------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (131)
++|+++|+||+|+.+.+.. ..+| .+++++||+++.| +.++++.+.+... .
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g-i~~L~~~I~~~~~--------------~ 162 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIG-MAKVMEAINRYRE--------------G 162 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBT-HHHHHHHHHHHHT--------------T
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCC-HHHHHHHHHhhcc--------------c
Confidence 7899999999999654211 1111 2578999999999 9999888766541 1
Q ss_pred eEEEEEcCCCCCchhhhhhhhhC------cCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQN------TFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.+++++|.+|+|||||+|++.+. .......|.+..+ ...+.+ +.. +.++||||-
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~-~~~---~~liDtPG~ 222 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPL-ESG---ATLYDTPGI 222 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEEC-STT---CEEEECCSC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEe-CCC---eEEEeCCCc
Confidence 36999999999999999999864 2222223333222 233444 322 689999994
No 86
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=5.5e-14 Score=97.19 Aligned_cols=63 Identities=19% Similarity=0.364 Sum_probs=49.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCc--CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNT--FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|++|||||||+++|++.. |...+ ++++.++..+.+.+ ++..+.+.+|||+|++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMV-DGESATIILLDMWENK 98 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEE-TTEEEEEEEECCTTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEE-CCeeeEEEEeecCCCc
Confidence 4567899999999999999999999543 34333 55777777788887 8899999999999985
No 87
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.49 E-value=3.1e-14 Score=97.74 Aligned_cols=65 Identities=35% Similarity=0.588 Sum_probs=53.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++++++.+...+.+|.+..+....+...++..+.+.||||+|++
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 44678999999999999999999999888888889998877666665534556899999999975
No 88
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.49 E-value=3.1e-14 Score=96.08 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=46.2
Q ss_pred CCCCceeeEEEEEcCCCCCchhhhhhhhhCcCCC-CccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKK-DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 64 ~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.......||+++|++|||||||+++|+++.+.. .+.+|++..+ ..+.. ..+.++||||+|++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEK---GRVAFTVFDMGGAK 74 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEE---TTEEEEEEEECCSG
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEe---CCEEEEEEECCCCH
Confidence 3456678899999999999999999999999987 7889998443 34433 45789999999985
No 89
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.48 E-value=1e-14 Score=97.99 Aligned_cols=62 Identities=26% Similarity=0.509 Sum_probs=39.9
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhC--cCCCCccCCceeEeEEEEEEec--CCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQN--TFKKDYKGTVGVDFALKIVKWR--DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~--~~~~~~l~i~Dt~Gqe 131 (131)
.+|++++|++|||||||+++|++. .+...+.+|++.++....+.+. ++..+.+++|||+|||
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 479999999999999999999974 5666788999988876655431 2356789999999974
No 90
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.48 E-value=9.1e-14 Score=93.10 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=49.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...++++++|++|||||||++++++..+...+.|+++.++....+.+ ++ +.+++|||||++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NG--EKFKVVDLPGVY 65 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TT--EEEEEEECCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-CC--cEEEEEECCCcC
Confidence 35689999999999999999999987766566677776776677766 55 678999999985
No 91
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.48 E-value=6.4e-14 Score=92.58 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=44.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++++++|++|||||||++++.+..+...+.|+++.++....+.+ ++ ..+++||||||+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~l~i~Dt~G~~ 61 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NG--EKFKVVDLPGVY 61 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-TT--EEEEEEECCCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-CC--cEEEEEECCCcc
Confidence 579999999999999999999987776555676666665666666 55 568999999985
No 92
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.47 E-value=9.2e-14 Score=94.21 Aligned_cols=61 Identities=20% Similarity=0.393 Sum_probs=47.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC--cCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN--TFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|||||||+++|++. .+...+ ++++.++..+.+.+ ++..+.+.+|||+|++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMV-DGESATIILLDMWENK 67 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEE-CCeEEEEEEEEeccCc
Confidence 4689999999999999999999953 344333 45777777777877 8899999999999975
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.46 E-value=6.5e-14 Score=94.27 Aligned_cols=61 Identities=21% Similarity=0.427 Sum_probs=47.7
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCc-CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNT-FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....+||+++|.+|||||||+++|.++. +...+.+|++ +....+.+ ++ +.+.||||+|++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~-~~--~~~~l~Dt~G~~ 78 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS-SS--LSFTVFDMSGQG 78 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEEC-SS--CEEEEEEECCST
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEE-CC--EEEEEEECCCCH
Confidence 45667999999999999999999999877 6677888887 44556666 54 678999999985
No 94
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.46 E-value=4.8e-14 Score=94.95 Aligned_cols=60 Identities=28% Similarity=0.543 Sum_probs=50.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|+++.+...+.||++.++. .+.. ..+.++||||+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK---GNVTIKLWDIGGQP 78 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE---TTEEEEEEEECCSH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe---CCEEEEEEECCCCH
Confidence 456899999999999999999999999998888899987764 3433 34778999999984
No 95
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.45 E-value=1.1e-13 Score=90.77 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=40.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+||+++|++|||||||++++.+..+. ...++.+..+ ...+.+ ++..+.+.+|||+|++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVV-DGEEASLMVYDIWEQD 60 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEE-TTEEEEEEEEECC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEE-CCEEEEEEEEECCCCc
Confidence 479999999999999999999876554 4456667666 456666 8899999999999985
No 96
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.44 E-value=7.5e-14 Score=92.56 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=50.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....++|+++|++|||||||+++|.++.+...+.++++.++....+.+ ++. .+.+|||||++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~Dt~G~~ 66 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-NDK--KITFLDTPGHE 66 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TTE--EEEESCCCSSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-CCc--eEEEEECCCCH
Confidence 345679999999999999999999998888777777776666666666 664 46799999985
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.43 E-value=1.3e-13 Score=94.39 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=45.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCe-EEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ-KIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||+++|+++.|...+.+ ++.++.. +.+ ++. .+.++|||||||+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKV-NNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EEC-SSTTCCEEEEEECCCCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEe-cCCCccEEEEEECCCCh
Confidence 3568999999999999999999999988877754 4445543 555 433 6889999999985
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.14 E-value=1.2e-14 Score=99.00 Aligned_cols=63 Identities=37% Similarity=0.587 Sum_probs=53.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||+++|.++.+...+.+|++..+ ...+.+ ++..+.+++|||+|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQE 89 (204)
Confidence 34678999999999999999999999888888888887666 455555 7778899999999985
No 99
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=1.6e-13 Score=92.15 Aligned_cols=57 Identities=26% Similarity=0.536 Sum_probs=45.9
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|.+|||||||++++.++.+. .+.||++.. ...+.+ ++ +.+++|||+|++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~-~~--~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVI-NN--TRFLMWDIGGQE 71 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEE-TT--EEEEEEECCC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEE-CC--EEEEEEECCCCH
Confidence 4689999999999999999999988887 778888744 345555 54 778999999985
No 100
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.42 E-value=1.2e-13 Score=90.39 Aligned_cols=55 Identities=22% Similarity=0.580 Sum_probs=44.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+||+++|++|||||||++++.++.+. .+.||++.. ...+.+ ..+.+++|||+|++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~---~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY---KNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSSCC--EEEEEC---SSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCcee--EEEEEE---CCEEEEEEEcCCCh
Confidence 58999999999999999999988886 467888733 445544 34679999999985
No 101
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.41 E-value=9.1e-14 Score=92.96 Aligned_cols=61 Identities=25% Similarity=0.481 Sum_probs=46.9
Q ss_pred CCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 65 APPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 65 ~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
......+||+++|.+|||||||+++|.++.+ ..+.+|++..+ ..+.+ ++ +.+++|||+|++
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~-~~--~~~~i~Dt~G~~ 76 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVI-NN--TRFLMWDIGGQE 76 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEE-TT--EEEEEEEESSSG
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEE-CC--EEEEEEECCCCH
Confidence 3456789999999999999999999998888 56778888554 45555 54 779999999985
No 102
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.41 E-value=5.5e-13 Score=96.58 Aligned_cols=61 Identities=38% Similarity=0.615 Sum_probs=53.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+|++++|.+|||||||+++|.++.+...+.+|++..+ ...+.+ ++..+.+++|||+|++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEE-TTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEE-CCEEEEEEEEeCCCch
Confidence 458999999999999999999999999888889988766 456666 8889999999999985
No 103
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.40 E-value=2.6e-13 Score=90.80 Aligned_cols=58 Identities=24% Similarity=0.597 Sum_probs=47.1
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||++++.++. ...+.||++.. ...+.+ ++ +.+++|||+|++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~-~~--~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEH-RG--FKLNIWDVGGQK 73 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEE-TT--EEEEEEEECCSH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEE-CC--EEEEEEECCCCH
Confidence 356899999999999999999999877 66788888844 455655 44 678999999984
No 104
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.40 E-value=4.9e-13 Score=87.94 Aligned_cols=57 Identities=23% Similarity=0.542 Sum_probs=46.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|||||||++++.++.+. .+.||++.. ...+.+ + .+.+++|||+|++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~-~--~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTY-K--NLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEE-T--TEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEE-C--CEEEEEEECCCCh
Confidence 4689999999999999999999988886 567888744 455655 4 4678999999985
No 105
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.40 E-value=1.8e-13 Score=91.70 Aligned_cols=58 Identities=26% Similarity=0.562 Sum_probs=46.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+|++++|++|||||||++++.++.+. .+.||++.. ...+.+ ++ +.+++|||+||+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~-~~--~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQS-QG--FKLNVWDIGGQR 71 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEE-TT--EEEEEEECSSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEE-CC--EEEEEEECCCCH
Confidence 45789999999999999999999987654 567888843 455666 53 678999999985
No 106
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.40 E-value=5.6e-13 Score=90.02 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=46.3
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|||||||++++.++.+. .+.||++.. ...+.+ ++ +.+++|||+||+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~-~~--~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAI-GN--IKFTTFDLGGHI 78 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEE-TT--EEEEEEECCCSG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEE-CC--EEEEEEECCCCH
Confidence 4579999999999999999999988876 577888764 455666 65 789999999985
No 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.39 E-value=2.4e-13 Score=92.46 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=41.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|||||||++++.++.+. .+.||++... ..+.+ ++ +.+++||||||+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~-~~--~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTI-AG--MTFTTFDLGGHI 80 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEE-TT--EEEEEEEECC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEE-CC--EEEEEEECCCcH
Confidence 4579999999999999999999988775 5778887654 45556 55 789999999985
No 108
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.39 E-value=2.4e-13 Score=92.01 Aligned_cols=58 Identities=24% Similarity=0.568 Sum_probs=44.1
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||++++.++.+. .+.||++ +....+.+ ++ +.+++|||+|++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~-~~--~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY-KN--ICFTVWDVGGQD 84 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE-TT--EEEEEEECC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE-CC--EEEEEEECCCCH
Confidence 35689999999999999999999988876 4667877 33455555 33 779999999985
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=3e-13 Score=90.09 Aligned_cols=58 Identities=26% Similarity=0.586 Sum_probs=44.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|++|||||||++++.++.+ ..+.||++.. ...+.+ ++ +.+++|||+|++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~-~~--~~~~i~Dt~G~~ 73 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSY-KN--LKLNVWDLGGQT 73 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEE-TT--EEEEEEEEC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEE-CC--EEEEEEECCCCH
Confidence 3568999999999999999999998887 4677888844 455555 44 778999999985
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.36 E-value=1.8e-12 Score=86.28 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=45.1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+|++++|.+|||||||++++.+..+. ....++++.++....+.+ ++. .+++|||||++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~--~~~l~Dt~G~~ 63 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGM--PLHIIDTAGLR 63 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTE--EEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCe--EEEEEECCCcc
Confidence 479999999999999999999976542 223345555666677777 664 47899999984
No 111
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.36 E-value=3e-13 Score=91.61 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=42.4
Q ss_pred CCCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEE--EecCCeEEEEEEEeCCCCC
Q psy10878 65 APPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIV--KWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 65 ~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~l~i~Dt~Gqe 131 (131)
......+||+++|++|||||||++++.+ .+... ++++.++....+ .+.++..+.++||||+|||
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 80 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQM 80 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCH
Confidence 3466789999999999999999997665 44433 444444433332 2323567889999999986
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.35 E-value=4.1e-13 Score=98.34 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=42.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCC---CccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKK---DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
|++++|++|||||||++++.++.+.. .+.||++.++.. + + ..++++||||||||
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v-~-~~v~LqIWDTAGQE 57 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----F-S-TLIDLAVMELPGQL 57 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----E-C-SSSCEEEEECCSCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----E-c-cEEEEEEEECCCch
Confidence 68999999999999999887654332 356899988752 2 3 24789999999997
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.35 E-value=1.8e-12 Score=91.99 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=47.7
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...++|+++|.+|||||||+|++.+..+.....|++..+.....+.. ++ +.+.||||||++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~--~~~~l~DtpG~~ 63 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-KG--YTINLIDLPGTY 63 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TT--EEEEEEECCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-CC--eEEEEEECCCcC
Confidence 45789999999999999999999987775555566666655555554 34 678999999984
No 114
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.34 E-value=4.1e-13 Score=90.14 Aligned_cols=57 Identities=30% Similarity=0.589 Sum_probs=46.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|||||||++++..+.+. .+.||++.. ...+.+ + .+.+++|||+||+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~-~--~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQY-K--NISFEVWDLGGQT 77 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEE-T--TEEEEEEEECCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEE-C--CEEEEEEECCCCH
Confidence 4689999999999999999999988776 467888743 445555 4 3678999999985
No 115
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.33 E-value=1.4e-12 Score=94.69 Aligned_cols=59 Identities=25% Similarity=0.495 Sum_probs=45.6
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC--cCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN--TFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~--~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+||+++|++|||||||++++.++ .+. ..+.+|++..+.. +.+ ++ .+.++|||||||+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~-~~-~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRF-LG-NMTLNLWDCGGQD 63 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEE-TT-TEEEEEEEECCSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEe-CC-ceEEEEEECCCcH
Confidence 3579999999999999999999876 332 2466788877653 333 44 4789999999985
No 116
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.33 E-value=1.2e-12 Score=93.41 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=42.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh-CcCCCCc-------cCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ-NTFKKDY-------KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~-~~~~~~~-------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...++|+++|.+|+|||||+|++++ +.+...+ .+|++.++....+.. +|..+.+.||||||+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGF 75 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCc
Confidence 4578999999999999999999664 4455555 677877776666655 677789999999997
No 117
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.32 E-value=1.8e-12 Score=89.78 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=41.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...+||+++|.+|||||||+++|+++.+.....+....+.....+.+ ++ +.+.||||||+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~DtpG~ 86 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-KL--NKYQIIDTPGL 86 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-TT--EEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-CC--CeEEEEECCCC
Confidence 45789999999999999999999988775333333333343344444 33 67899999998
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.32 E-value=2.6e-12 Score=83.67 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.|++++|++|+|||||++++.++.+. ....++...++....+.+ ++. .+.+|||+|++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~Dt~G~~ 60 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRG--RFLLVDTGGLW 60 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTE--EEEEEECGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCc--eEEEEECCCCC
Confidence 58999999999999999999987653 233344455555666666 554 67899999975
No 119
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.29 E-value=5.2e-12 Score=89.97 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=49.4
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++++++|.+|||||||++++.+..+...+.|+++.+.....+.+ ++. .+.+|||||++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~~--~~~l~DtpG~~ 61 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-REK--EFLVVDLPGIY 61 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TTE--EEEEEECCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CCc--eEEEEeCCCcc
Confidence 579999999999999999999988776666788887877777777 554 48999999974
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.28 E-value=5.4e-12 Score=89.52 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=47.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|+++|.+|||||||+|++.+..+.....|+++.+.....+.+ ++. .+.||||||++
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~~--~~~lvDtpG~~ 59 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL-GEH--LIEITDLPGVY 59 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TTE--EEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE-CCe--EEEEEeCCCcc
Confidence 7999999999999999999987765556677777777777777 654 68999999974
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.26 E-value=4e-12 Score=90.91 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=48.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++|+++|.+|||||||+|++.+..+...+.|+++.+.....+.+ ++. .+.+|||||++
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~~--~~~liDtpG~~ 61 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST-TDH--QVTLVDLPGTY 61 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SSC--EEEEEECCCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CCC--ceEEEECcCCC
Confidence 579999999999999999999988776566677777777777766 453 46889999974
No 122
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.25 E-value=6.5e-12 Score=84.42 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=36.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
...++|+++|.+|||||||+++++++.+...+.++.+.........+ ++ .+.+|||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~l~Dt~G 78 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-ND---ELHFVDVPG 78 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TT---TEEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CC---cEEEEECCC
Confidence 45689999999999999999999988876666677765554444444 44 389999999
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.25 E-value=3.9e-12 Score=91.04 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=42.1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++|+++|.+|||||||+|++.+..+.....|++..+. +...+ +. .+.+++|||||++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~-~~-~~~l~l~DtpG~~ 60 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLV-KK-NKDLEIQDLPGIY 60 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEEC-TT-CTTEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEE-ec-CCeEEEEECCCcC
Confidence 57999999999999999999997654333345444333 33333 44 5678999999985
No 124
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.24 E-value=3e-12 Score=99.14 Aligned_cols=65 Identities=28% Similarity=0.476 Sum_probs=43.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEE------EEec-CCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKI------VKWR-DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~------~~~~-~~~~~~l~i~Dt~Gqe 131 (131)
....+||+++|.+|||||||++++.+..+...+.||++.++..+. +.+. ++..+.+.+|||+|||
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e 109 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE 109 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHH
Confidence 456799999999999999999999999998888899998876542 2111 2345789999999986
No 125
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.23 E-value=2e-11 Score=85.17 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=43.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccC--CceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKG--TVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++|+++|.+|||||||+|++++..+.....+ +++.+.....+.+ ++. .+.||||||.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~--~i~liDTpG~ 88 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KET--ELVVVDTPGI 88 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTE--EEEEEECCSC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCc--eEEEEECCCc
Confidence 45678999999999999999999998877655544 4444555555666 554 5789999993
No 126
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.23 E-value=2.4e-11 Score=86.19 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=42.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcC--CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTF--KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...++|+++|.+|+|||||++++++..+ ...+.+ .........+.+ ++. .+.||||||++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~-~t~~~~~~~~~~-~~~--~l~liDTpG~~ 95 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQA-EGLRPVMVSRTM-GGF--TINIIDTPGLV 95 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEE-TTE--EEEEEECCCSE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-cceeeEEEEEEE-CCe--eEEEEECCCCC
Confidence 3578999999999999999999998765 223322 233333445555 553 78999999984
No 127
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.22 E-value=5.6e-12 Score=88.86 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=39.5
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCC--ceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGT--VGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.....++|+++|.+|||||||+|++++..+.....++ +........+.+ ++ ..+.||||||.
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~--~~i~liDTPG~ 80 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DK--CHVEVVDTPDI 80 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TT--EEEEEEECCSC
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CC--cEEEEEECCCC
Confidence 3456799999999999999999999987664332222 222222334444 44 45789999995
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.22 E-value=9.9e-12 Score=94.17 Aligned_cols=57 Identities=25% Similarity=0.445 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+|+++|.+|||||||+|++++.++. ....|+++.++....+.+ ++. .+++|||||++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~--~~~l~DT~G~~ 60 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGK--TFKLVDTCGVF 60 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTE--EEEEEECTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCe--EEEEEECCCcc
Confidence 7999999999999999999977642 234456666666677777 665 46899999975
No 129
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.21 E-value=6.3e-12 Score=92.08 Aligned_cols=58 Identities=22% Similarity=0.548 Sum_probs=43.5
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...+||+++|.+|||||||+++|.++.+... .||++..+. .+.. + .+.++||||+|||
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~-~--~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY-K--NISFTVWDVGGQD 220 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE-T--TEEEEEEECC---
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec-C--cEEEEEEECCCCH
Confidence 4568999999999999999999998887644 478776553 3433 3 3679999999986
No 130
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.19 E-value=1.5e-11 Score=94.18 Aligned_cols=59 Identities=24% Similarity=0.518 Sum_probs=47.0
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....+|++++|.+|||||||+++|.++.+. .+.||++..+. .+.+ + .+.+.||||+||+
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~-~--~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY-K--NVKFNVWDVGGQD 377 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEES-S--SCEEEEEEECCCG
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEe-C--CEEEEEEECCCcH
Confidence 356799999999999999999999988876 45688886653 3444 3 3678999999985
No 131
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.18 E-value=9.2e-13 Score=93.20 Aligned_cols=60 Identities=22% Similarity=0.416 Sum_probs=41.7
Q ss_pred CCceeeEEEEEcCC---------CCCchhhhhhhhh---CcCCCCccCCc-eeEeEEEEEE--------------ecCCe
Q psy10878 66 PPEKLFKVIVIGDP---------TVGKTSFVQRYVQ---NTFKKDYKGTV-GVDFALKIVK--------------WRDQQ 118 (131)
Q Consensus 66 ~~~~~~ki~vvG~~---------~vGKSsli~~~~~---~~~~~~~~~t~-~~~~~~~~~~--------------~~~~~ 118 (131)
.....+||+++|++ |||||||+++|++ +.+...+.||+ +.++..+.+. + ++.
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~ 93 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE-DCV 93 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc-CCc
Confidence 35667999999999 9999999999998 66777777775 4444322221 2 567
Q ss_pred EEEEEEEe
Q psy10878 119 KIKLQLWD 126 (131)
Q Consensus 119 ~~~l~i~D 126 (131)
.+.++|||
T Consensus 94 ~~~l~i~D 101 (255)
T 3c5h_A 94 ECKMHIVE 101 (255)
T ss_dssp --CEEEEE
T ss_pred EEEEEEEE
Confidence 88999999
No 132
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.18 E-value=3.5e-12 Score=92.48 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=52.9
Q ss_pred cCCCcEEeeccCCCcccccc-c-cc---c----c-CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEE
Q psy10878 4 KAKKPILLPSASEDPSIDNW-D-KA---S----W-ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKV 73 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~-~-~~---~----~-~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 73 (131)
..++|+++|+||+|+.+... . .. + + ..++++||+++.| +.++++.+... .+
T Consensus 108 ~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~g-i~~L~~~l~G~------------------i~ 168 (302)
T 2yv5_A 108 YFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEG-IDELVDYLEGF------------------IC 168 (302)
T ss_dssp HTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTT-HHHHHHHTTTC------------------EE
T ss_pred hCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCC-HHHHHhhccCc------------------EE
Confidence 35799999999999965421 0 11 1 1 4578999999999 88876654332 38
Q ss_pred EEEcCCCCCchhhhhhhh
Q psy10878 74 IVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 74 ~vvG~~~vGKSsli~~~~ 91 (131)
+++|.+|+|||||+|.+.
T Consensus 169 ~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 169 ILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999988
No 133
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.18 E-value=2.6e-11 Score=85.56 Aligned_cols=61 Identities=11% Similarity=0.283 Sum_probs=44.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCc-CCCCccCC-ceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNT-FKKDYKGT-VGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++|+++|.+|||||||++++++.. +...+.++ +..+.....+.+ ++ ..+.||||||+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~iiDTpG~ 81 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GN--REIVIIDTPDM 81 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TT--EEEEEEECCGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CC--CEEEEEECcCC
Confidence 3456899999999999999999999776 55555554 444444555555 55 45899999996
No 134
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.18 E-value=1.3e-11 Score=87.77 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=40.7
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCC--CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFK--KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...++|+++|.+|+|||||+|++++..+. ..+.++ ........+.. + .+.+.||||||++
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~-~--~~~l~iiDTpG~~ 98 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSE-GPRPVMVSRSR-A--GFTLNIIDTPGLI 98 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCC-CSSCEEEEEEE-T--TEEEEEEECCCSE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-ceeeEEEEEee-C--CeEEEEEECCCCC
Confidence 34789999999999999999999987653 222222 21222223333 3 3568999999974
No 135
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.18 E-value=1.7e-11 Score=81.85 Aligned_cols=52 Identities=19% Similarity=0.454 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
+||+++|++|||||||+++++++.+...+.|++.... ..+.+ + .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~-~----~~~l~Dt~G 53 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEW-K----NHKIIDMPG 53 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEE-T----TEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEec-C----CEEEEECCC
Confidence 5899999999999999999999888877777665433 33444 3 478999999
No 136
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.17 E-value=5.5e-12 Score=86.44 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=41.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCC---CccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKK---DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....++++++|++|+|||||++++.+..+.. .+.|+++.++ ..+.+.+|||+|++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHV 66 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----------GGSSCEEEECCCCG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----------eCceEEEEECCCcH
Confidence 3456899999999999999999999887654 3445554333 23458999999985
No 137
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.17 E-value=1.1e-12 Score=95.30 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=53.3
Q ss_pred cCCCcEEeeccCCCcccccc---ccccc--------CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeE
Q psy10878 4 KAKKPILLPSASEDPSIDNW---DKASW--------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFK 72 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~---~~~~~--------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 72 (131)
..++|+++|+||+||.+... ....| .+++++|+.++.| +.++++.... -.
T Consensus 115 ~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g-~~~L~~~~~G------------------~~ 175 (307)
T 1t9h_A 115 ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDS-LADIIPHFQD------------------KT 175 (307)
T ss_dssp TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTT-CTTTGGGGTT------------------SE
T ss_pred HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCC-HHHHHhhcCC------------------CE
Confidence 47899999999999976532 11222 5678999999998 7776543211 15
Q ss_pred EEEEcCCCCCchhhhhhhhhC
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~~ 93 (131)
++++|.+|||||||+|.+.+.
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHhccc
Confidence 899999999999999998754
No 138
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.16 E-value=4.8e-12 Score=93.71 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=54.2
Q ss_pred cCCCcEEeeccCCCcccccc------ccccc----CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEE
Q psy10878 4 KAKKPILLPSASEDPSIDNW------DKASW----ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKV 73 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~------~~~~~----~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 73 (131)
..++|++||+||+||.+.+. ....| .+++++|+.++.| +.++...+.. -.+
T Consensus 158 ~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g-l~~L~~~~~G------------------~~~ 218 (358)
T 2rcn_A 158 TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG-LKPLEEALTG------------------RIS 218 (358)
T ss_dssp HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT-HHHHHHHHTT------------------SEE
T ss_pred hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC-HHHHHHhcCC------------------CEE
Confidence 35899999999999976542 11122 4688999999999 8777543211 158
Q ss_pred EEEcCCCCCchhhhhhhhhCc
Q psy10878 74 IVIGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 74 ~vvG~~~vGKSsli~~~~~~~ 94 (131)
+++|.+|+|||||+|.+++..
T Consensus 219 ~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 219 IFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEECCTTSSHHHHHHHHHCCS
T ss_pred EEECCCCccHHHHHHHHhccc
Confidence 999999999999999998643
No 139
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.15 E-value=5.6e-12 Score=84.72 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=37.0
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCC---CccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKK---DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
...++|+++|.+|||||||++++.+..+.. .+.++++.++ ..+.+.+|||+|++
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~ 102 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHV 102 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----------CCTTCSEEEETTCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----------cCCeEEEEECCCCc
Confidence 456899999999999999999999887643 2333333222 23457899999985
No 140
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.15 E-value=8.5e-11 Score=85.17 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=41.1
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCC-CccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKK-DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+..+++++|.+|||||||+|++++..+.. ...|.+..+.....+.. + ...+.||||||++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~--~~~l~l~DTpG~~ 66 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-G--RRQIVFVDTPGLH 66 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-T--TEEEEEEECCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-C--CcEEEEecCcccc
Confidence 45689999999999999999999887742 23332222222222333 3 3678999999974
No 141
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.14 E-value=6.9e-11 Score=79.06 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=42.2
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
....+||+++|.+|||||||+++++++.+. .+.++.+.......... +. .+.+|||+|
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~-~~---~~~i~Dt~G 77 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLV-NS---KYYFVDLPG 77 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEE-TT---TEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEE-CC---cEEEEECCC
Confidence 345679999999999999999999987743 45566655443333333 33 367999999
No 142
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.12 E-value=1.3e-11 Score=89.32 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCCcEEeeccCCCcccccc--cccc----cC---CCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEEEE
Q psy10878 5 AKKPILLPSASEDPSIDNW--DKAS----WE---NVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~~~----~~---~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v 75 (131)
.++|++||+||+|+.+... ...+ +. .++++||+++.| +.++++.+... .+++
T Consensus 114 ~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~g-v~~lf~~l~ge------------------iv~l 174 (301)
T 1u0l_A 114 NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMG-IEELKEYLKGK------------------ISTM 174 (301)
T ss_dssp TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTT-HHHHHHHHSSS------------------EEEE
T ss_pred CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcC-HHHHHHHhcCC------------------eEEE
Confidence 5789999999999965421 0111 12 568899999999 88887654433 3889
Q ss_pred EcCCCCCchhhhhhhhhCc
Q psy10878 76 IGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 76 vG~~~vGKSsli~~~~~~~ 94 (131)
+|.+|+|||||++.+.+..
T Consensus 175 ~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTC
T ss_pred ECCCCCcHHHHHHHhcccc
Confidence 9999999999999988643
No 143
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.10 E-value=2.6e-11 Score=83.27 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=40.1
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...++|+++|.+|+|||||++++++..+.....++.+.........+.......+.||||||.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 89 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGY 89 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCC
Confidence 346799999999999999999999876322222222222222222231123356899999994
No 144
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.08 E-value=7.3e-11 Score=90.42 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=33.0
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..++|+++|.+|||||||+|++++..+ .....++++.++....+.+ +| +.+.||||||++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g--~~l~liDT~G~~ 292 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DK--TMFRLTDTAGLR 292 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TT--EEEEEEC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CC--eEEEEEECCCCC
Confidence 458999999999999999999997643 2344455566666667777 66 468999999974
No 145
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.07 E-value=7.3e-11 Score=80.27 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=35.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...+++++|.+|+|||||++++++..+...+.|+.|..+....+.+ ++ .+.+|||+|+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~-~~---~~~l~Dt~G~ 82 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV-AD---GKRLVDLPGY 82 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-ET---TEEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe-cC---CEEEEECcCC
Confidence 4568999999999999999999987655555677776554444444 33 3689999997
No 146
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=86.61 Aligned_cols=62 Identities=18% Similarity=0.338 Sum_probs=37.5
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh-CcCCCCcc--------CCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ-NTFKKDYK--------GTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~-~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...++|+++|.+|+|||||++++++ ..+...+. +|++.++....+.. ++..+.+++|||+|+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGY 105 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC----
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEeccc
Confidence 4568999999999999999999664 44443332 56666655444554 677789999999997
No 147
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.06 E-value=3.2e-10 Score=82.30 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=42.6
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCC-CccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKK-DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+...-.|+++|.+|||||||+|++++..+.. ...+.+........+.. + ..+.+.||||||+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~-~~~~i~lvDTPG~ 69 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-P-NEAQIIFLDTPGI 69 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-T-TTEEEEEEECCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-C-CCCeEEEEECcCC
Confidence 5566789999999999999999999887642 22232222332333333 3 1467899999997
No 148
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.02 E-value=2.6e-10 Score=86.24 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=40.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....++|+++|.+++|||||++++++..+. ....+++..+.....+.+ .+. ..+.||||||++
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~-~~~-~~l~liDTpG~~ 94 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL-HPI-GPVTLVDTPGLD 94 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE-TTT-EEEEEEECSSTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE-CCC-CeEEEEECcCCC
Confidence 445789999999999999999999987763 233344455555666666 443 368999999985
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.01 E-value=5.4e-11 Score=90.07 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccCCcee--EeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGV--DFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.+|+++|.+|||||||+|++++.++. ...++.|. +.....+.+ ++ ..+.+|||+|++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~-~~--~~~~l~DT~G~~ 62 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEW-LN--YDFNLIDTGGID 62 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CS--SCCEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEE-CC--ceEEEEECCCCC
Confidence 58999999999999999999987664 22333343 443444444 33 458999999984
No 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.00 E-value=1.2e-10 Score=89.36 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=45.4
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.++|+++|.+|||||||+|++++.++ .....|+++.++....+.+ ++. .+.||||||++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~--~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGI--LFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTE--EEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CCe--EEEEEECCCcc
Confidence 47999999999999999999997654 2333455555666677777 664 57899999974
No 151
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.99 E-value=1.6e-10 Score=85.76 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcCCCCccC--CceeEeEEEEEEecCCe---------------EEEEEEEeCCCCC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKG--TVGVDFALKIVKWRDQQ---------------KIKLQLWDIAGQN 131 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~Gqe 131 (131)
++++++|.+|||||||+|++.+..+.....| |+..+. ..+.+ .+. ...+++|||||++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 77 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLV 77 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEec-CCcccceeeeeecccceeeeEEEEEECCCCc
Confidence 6899999999999999999998664322222 333222 12333 332 2568999999984
No 152
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.94 E-value=2.7e-10 Score=81.55 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=25.5
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFK 96 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~ 96 (131)
....+|+++|.+|||||||+|++++..+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 34579999999999999999999988773
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.93 E-value=2.4e-09 Score=81.20 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=43.8
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCc-------------------------------CCCCccCCceeEeEEEEEEec
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNT-------------------------------FKKDYKGTVGVDFALKIVKWR 115 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 115 (131)
....++++++|.+++|||||+++++... +..+..++++.+.....+..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~- 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET- 92 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-
Confidence 4457899999999999999999995421 11122345555665555655
Q ss_pred CCeEEEEEEEeCCCCC
Q psy10878 116 DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 116 ~~~~~~l~i~Dt~Gqe 131 (131)
++ ..+.||||||++
T Consensus 93 ~~--~~~~iiDTPGh~ 106 (439)
T 3j2k_7 93 EK--KHFTILDAPGHK 106 (439)
T ss_pred CC--eEEEEEECCChH
Confidence 33 478999999985
No 154
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.92 E-value=2.1e-10 Score=87.60 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=40.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
..++++++|.+|||||||+|++++..+. ....++++.++....+.+ +|. .+.||||||+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~--~v~liDT~G~ 282 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GGI--PVQVLDTAGI 282 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TTE--EEEECC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CCE--EEEEEECCcc
Confidence 4689999999999999999999976542 333455555555556666 664 4689999996
No 155
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.90 E-value=6.1e-10 Score=83.44 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=36.0
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCe---------------EEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ---------------KIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~Gqe 131 (131)
..+++.++|.+|||||||+|++.+..+.....|+.+.+.....+.+ .+. ...+++|||||+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v-~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV-PDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE-CCccceeeccccCcccccccccEEEECCCcc
Confidence 3568999999999999999999977664444444444444444544 332 2358999999974
No 156
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=1.3e-09 Score=81.80 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
++|+++|.+|||||||+|++.+...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~ 25 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV 25 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4899999999999999999997653
No 157
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.88 E-value=8.4e-10 Score=79.92 Aligned_cols=63 Identities=17% Similarity=0.338 Sum_probs=32.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhC-cCCCCc--------cCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQN-TFKKDY--------KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....++++++|++|+|||||++++.+. .+...+ .+++........++. ++....+++|||+|+
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGY 86 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC----CCEEEEEEEEC--
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-CCcccCcchhhhhhh
Confidence 445689999999999999999997754 554433 123322221222222 455678999999997
No 158
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.86 E-value=2.1e-09 Score=79.35 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=41.0
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...++++++|.+|||||||++++.+..+.....+....+.....+.. ++ ..+.+|||+|+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~Dt~G~ 224 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED-GY--FRYQIIDTPGL 224 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE-TT--EEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe-cC--ceEEEEeCCCc
Confidence 34679999999999999999999977653222222222333334433 33 56899999997
No 159
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.86 E-value=2.9e-09 Score=77.03 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=39.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+..+++++|.+|||||||+|++++..+. ....+.+..+.....+.. ++ ..+.+|||||++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~--~~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GA--YQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TT--EEEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CC--eeEEEEECcCCC
Confidence 3458999999999999999999987653 222232221221222333 33 568899999974
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.86 E-value=2.3e-09 Score=79.53 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=37.7
Q ss_pred eeE-EEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 70 LFK-VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 70 ~~k-i~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.++ ++++|.+|+|||||+|++.+..+.....+....++....+.+ +|. .+.+|||+|+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-~g~--~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNR--KIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-TTE--EEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-CCE--EEEEEeCCCc
Confidence 345 999999999999999999977664333333333455666777 664 5789999995
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.86 E-value=4.7e-10 Score=85.34 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=36.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
...+|+++|.+|||||||+|++++.++. ...++.|.+........ +.....+++|||+|
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~-~~~~~~~~liDT~G 80 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGG 80 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEEC-TTCSSCCEEECCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEE-EECCceEEEEECCC
Confidence 3568999999999999999999987664 22334444333222222 33335689999999
No 162
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=6.3e-09 Score=78.51 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=38.3
Q ss_pred CCceeeEEEEEcCCCCCchhhhhhhhhCcCCCC-c-------cCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKD-Y-------KGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 66 ~~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~-~-------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
.....++++++|++|+|||||++++++..+... + .++++..+....+.. ++....+++|||+|++
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~-~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFG 99 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC---
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec-CCcccceeeeechhhh
Confidence 345678999999999999999999998766311 1 234443332222222 3445679999999973
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.79 E-value=1.7e-10 Score=89.49 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=45.1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+|+++|.+++|||||+++|.+..+...+.++++.++....+.+.++ ..++||||||++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe 63 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHA 63 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChH
Confidence 457999999999999999999987776666677666554444433223 358899999985
No 164
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.78 E-value=2.4e-09 Score=82.01 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.0
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
...+||+++|.+++|||||+++|+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999754
No 165
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.72 E-value=4.1e-09 Score=77.70 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=24.3
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFK 96 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~ 96 (131)
..+|+++|.+|||||||+|++++..+.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 468999999999999999999988773
No 166
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.72 E-value=7.4e-09 Score=79.41 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=39.0
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCc-------CCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNT-------FKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....++++++|..++|||||++++.+.. +..+..+.+..+.....+.+ ++ ..+.||||||++
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~--~~i~iiDtPGh~ 84 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-EN--YRITLVDAPGHA 84 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TT--EEEEECCCSSHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CC--EEEEEEECCChH
Confidence 4467899999999999999999998765 23333343333333334555 44 568999999974
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.70 E-value=6.5e-09 Score=81.80 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.7
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
....++|+++|.+++|||||+++++..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHh
Confidence 345789999999999999999999854
No 168
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.68 E-value=7.5e-09 Score=76.93 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhhCc
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~~ 94 (131)
++++++|.+|||||||+|++.+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998654
No 169
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.68 E-value=2.5e-08 Score=74.82 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=39.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC---cCCCCccC--CceeEeEEEEEEec------------C--Ce----EEEEEEE
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN---TFKKDYKG--TVGVDFALKIVKWR------------D--QQ----KIKLQLW 125 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~---~~~~~~~~--t~~~~~~~~~~~~~------------~--~~----~~~l~i~ 125 (131)
..++++++|..++|||||++++.+. .+..++.+ |+...|....+... + +. ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4689999999999999999999843 34444445 55555544433210 0 21 3679999
Q ss_pred eCCCCC
Q psy10878 126 DIAGQN 131 (131)
Q Consensus 126 Dt~Gqe 131 (131)
||||++
T Consensus 87 DtPGh~ 92 (408)
T 1s0u_A 87 DSPGHE 92 (408)
T ss_dssp ECSSHH
T ss_pred ECCCHH
Confidence 999974
No 170
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.66 E-value=6.5e-09 Score=81.52 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.9
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
....++|+++|.+++|||||+++++.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHH
Confidence 44678999999999999999999963
No 171
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.66 E-value=2e-08 Score=72.37 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=24.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
...+|+++|.+|+|||||+|++++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 346899999999999999999998776
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.64 E-value=6.4e-08 Score=72.61 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=43.0
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhC---cCCCCccC--CceeEeEEEEEEec------------C--Ce----EEEEE
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQN---TFKKDYKG--TVGVDFALKIVKWR------------D--QQ----KIKLQ 123 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~---~~~~~~~~--t~~~~~~~~~~~~~------------~--~~----~~~l~ 123 (131)
....++|+++|..++|||||++++.+. .+..++.+ |+...|....+... + +. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 346789999999999999999999843 34444445 55545543333210 0 11 36799
Q ss_pred EEeCCCCC
Q psy10878 124 LWDIAGQN 131 (131)
Q Consensus 124 i~Dt~Gqe 131 (131)
||||||++
T Consensus 87 iiDtPGh~ 94 (410)
T 1kk1_A 87 FIDAPGHE 94 (410)
T ss_dssp EEECSSHH
T ss_pred EEECCChH
Confidence 99999974
No 173
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.64 E-value=8.5e-09 Score=78.04 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.6
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
..++++++|..++|||||+++++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999853
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.63 E-value=2.4e-09 Score=82.44 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=41.4
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
..+++++|..++|||||++++....+.....+++..+.....+.+ ++. .+.||||||++
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~~--~i~~iDTPGhe 62 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-ENG--MITFLDTPGHA 62 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TSS--CCCEECCCTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CCE--EEEEEECCCcH
Confidence 457999999999999999999976665444444433332233433 443 57899999985
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.63 E-value=3.1e-08 Score=74.94 Aligned_cols=26 Identities=15% Similarity=0.547 Sum_probs=23.2
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
...++++++|..++|||||+++++.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhh
Confidence 35689999999999999999999854
No 176
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.7e-08 Score=74.15 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=43.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G 129 (131)
......|.+||.||||||||+|++.+........|....+.....+.+ ++. .+++.||||
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~-~~~--~i~l~D~pG 128 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY-KGA--KIQMLDLPG 128 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE-TTE--EEEEEECGG
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe-CCc--EEEEEeCCC
Confidence 444568999999999999999999865543333344444555566666 554 578999998
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.61 E-value=1.1e-08 Score=77.94 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.0
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
...++++++|.+++|||||+++++..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999853
No 178
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.61 E-value=1.1e-08 Score=76.63 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++++|.+++|||||++++++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 3568999999999999999999986
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.61 E-value=1.7e-08 Score=74.53 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
.|+++|++|+|||||++++.+..|
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 799999999999999999998776
No 180
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.58 E-value=7e-09 Score=76.39 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC-CCcc-CCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK-KDYK-GTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
+|+++|.+|||||||++++.+.... ..|. .|.... ...+.+ ++ ...+.||||||+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~-~~-~~~~~l~DtPG~ 216 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVET-DD-GRSFVMADLPGL 216 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEEC-SS-SCEEEEEEHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEe-CC-CceEEEecCCCC
Confidence 5889999999999999999876542 2232 222222 233444 33 135889999984
No 181
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.58 E-value=1.3e-07 Score=70.86 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.1
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCc
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNT 94 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~ 94 (131)
....++|+++|.+++|||||++++.+..
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 3456899999999999999999998643
No 182
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.58 E-value=7e-08 Score=75.78 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=33.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhC--cCCC-----Ccc------CCceeEeE--EEEEEec--CCeEEEEEEEeCCCCC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQN--TFKK-----DYK------GTVGVDFA--LKIVKWR--DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~--~~~~-----~~~------~t~~~~~~--~~~~~~~--~~~~~~l~i~Dt~Gqe 131 (131)
..+++++|..++|||||+++++.. .+.. .+. .+.|.++. ...+.+. ++..+.++||||||++
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 468999999999999999999852 1110 110 11222222 2223332 4667899999999984
No 183
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.54 E-value=1.2e-08 Score=79.01 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCchhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~ 91 (131)
...+|+++|.+++|||||+++++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 35689999999999999999996
No 184
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.54 E-value=2.7e-08 Score=74.47 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++++|..++|||||++++++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 579999999999999999999863
No 185
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.52 E-value=5.1e-08 Score=72.48 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+++++|.+++|||||+++++ .+..|+...+ ..+.+ ++ ..+.||||||++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~-~~--~~i~iiDtPGh~ 71 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDK-EG--RNMVFVDAHSYP 71 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECS-SS--SEEEEEECTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEec-CC--eEEEEEECCChH
Confidence 89999999999999999998 2223333222 33433 33 458999999985
No 186
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.52 E-value=2.7e-08 Score=77.11 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...+|+++|.+++|||||+++++.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHh
Confidence 457999999999999999999985
No 187
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.52 E-value=1.2e-07 Score=77.17 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
...||+++|..++|||||+++++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999853
No 188
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.51 E-value=7e-08 Score=72.25 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=41.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCceeEeEEEEEEecCCe---------------EEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTVGVDFALKIVKWRDQQ---------------KIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~Gq 130 (131)
...++.++|.+|+|||||+|.+.+... .....|....+.....+.+ .+. ...+.+|||+|.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecccc
Confidence 356899999999999999999998665 4344454443343344444 331 135899999984
No 189
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.48 E-value=5.5e-08 Score=74.24 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++|+++|..++|||||+++++.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4568999999999999999999874
No 190
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.48 E-value=5.9e-09 Score=71.62 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCccCCceeEeE
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFA 108 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~ 108 (131)
...+++++|.+|||||||+++|+...+...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 3579999999999999999999987666556677776653
No 191
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.46 E-value=1.2e-07 Score=75.58 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=27.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC-CCCccCCc
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF-KKDYKGTV 103 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~-~~~~~~t~ 103 (131)
..++|+++|.+|+|||||+|++++..+ +....|++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 468999999999999999999997765 33334444
No 192
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.46 E-value=1.3e-07 Score=74.22 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=35.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC--cCCC-----CccC------CceeEe--EEEEEEec--CCeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN--TFKK-----DYKG------TVGVDF--ALKIVKWR--DQQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~--~~~~-----~~~~------t~~~~~--~~~~~~~~--~~~~~~l~i~Dt~Gqe 131 (131)
...+++++|..++|||||+++++.. .+.. .+.. ..|.++ ....+.+. ++..+.++||||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4568999999999999999999852 2111 0000 011111 11122221 5667899999999984
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.44 E-value=9.4e-08 Score=75.87 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=38.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCcc------------------CCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYK------------------GTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
...+++++|..++|||||+++++......... ..++.......+.+ ..+.++||||+|+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~---~~~~~nliDTpG~ 84 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF---RGHRVFLLDAPGY 84 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE---TTEEEEEEECCCS
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee---CCEEEEEEeCCCc
Confidence 45689999999999999999998433211100 11222222333433 3467899999998
Q ss_pred C
Q psy10878 131 N 131 (131)
Q Consensus 131 e 131 (131)
+
T Consensus 85 ~ 85 (665)
T 2dy1_A 85 G 85 (665)
T ss_dssp G
T ss_pred c
Confidence 5
No 194
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.42 E-value=2.2e-07 Score=74.04 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=37.5
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhC--cCCC------------------CccCCceeEeEEEEEEecCCeEEEEEEEe
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQN--TFKK------------------DYKGTVGVDFALKIVKWRDQQKIKLQLWD 126 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~l~i~D 126 (131)
.....+|+++|.+++|||||+++++.. .+.. .+.+|+... ...+.+ + .+.++|||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~-~--~~~i~liD 83 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW-K--DHRINIID 83 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE-T--TEEEEEEC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE-C--CeEEEEEE
Confidence 456789999999999999999999832 1110 112333322 233444 3 36789999
Q ss_pred CCCCC
Q psy10878 127 IAGQN 131 (131)
Q Consensus 127 t~Gqe 131 (131)
|||++
T Consensus 84 TPG~~ 88 (691)
T 1dar_A 84 TPGHV 88 (691)
T ss_dssp CCSST
T ss_pred CcCcc
Confidence 99984
No 195
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.41 E-value=5.2e-08 Score=76.45 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=38.9
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCC----CccCCceeEeEEEEE------EecC-----CeEEEEEEEeCCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKK----DYKGTVGVDFALKIV------KWRD-----QQKIKLQLWDIAGQN 131 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~----~~~~t~~~~~~~~~~------~~~~-----~~~~~l~i~Dt~Gqe 131 (131)
+..+|+++|.+++|||||++++++..+.. ...++++..+..... ...+ .....++||||||++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 34689999999999999999998765532 122344543321100 0000 111258999999985
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.39 E-value=1.7e-07 Score=73.02 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=25.6
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhCcCC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFK 96 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~~~~ 96 (131)
....+|+++|.+|+|||||+|++++..+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 45679999999999999999999988763
No 197
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.33 E-value=3.9e-07 Score=72.70 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
....+|+++|.+++|||||+++++.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999984
No 198
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.33 E-value=1e-07 Score=79.50 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=37.4
Q ss_pred CceeeEEEEEcCCCCCchhhhhhhhhCc-------CCC-------CccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 67 PEKLFKVIVIGDPTVGKTSFVQRYVQNT-------FKK-------DYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 67 ~~~~~ki~vvG~~~vGKSsli~~~~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
....++|+++|.+++|||||++++.+.. +.. ....+.|.++....+.+ +.....+.||||||++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f-~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-DTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE-ECSSCEEEEEECCCHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE-cCCCEEEEEEECCChH
Confidence 3456899999999999999999998631 100 01122333222222233 3334678999999974
No 199
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.32 E-value=1.2e-06 Score=70.05 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
....+|+++|..++|||||+++++.
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
No 200
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.16 E-value=2.2e-06 Score=67.23 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcCCCCcc-----CCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYK-----GTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
....|+++|.+|||||||+|++++....-... .|.+... ....+.......+.++||||-
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~--~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM--WCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEE--EEEECSSSTTCEEEEEEECCB
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEE--eecccccCCCceEEEecCCCc
Confidence 45789999999999999999999765321221 2222211 111111112235789999994
No 201
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.14 E-value=1.3e-06 Score=65.80 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCchhhhhhhhhCcCC-CCccCCceeEeEEEEEEecCCeEEEEEEEeCCCC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQNTFK-KDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gq 130 (131)
.++++|.+|+|||||++++.+.... ..+..+ ........+.+ ++ ...+.+|||+|+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft-Tl~p~~G~V~~-~~-~~~~~l~DtpGl 215 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEV-SE-EERFTLADIPGI 215 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEEC-SS-SCEEEEEECCCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccc-eecceeeEEEe-cC-cceEEEEecccc
Confidence 4789999999999999999865331 122111 11122233444 33 245789999996
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.10 E-value=3.9e-07 Score=62.21 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
..+++++|.+|+|||||+++++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 203
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.07 E-value=7.4e-07 Score=59.25 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=36.9
Q ss_pred CCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 120 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 176 (195)
T 1x3s_A 120 NDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDG-VQCAFEELVEKI 176 (195)
T ss_dssp SCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 478999999999995433221 112 3568899999999 999999887765
No 204
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.98 E-value=5.4e-06 Score=60.95 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=18.7
Q ss_pred ceeeEEEEEcCCCCCchhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQR 89 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~ 89 (131)
...+|++++|...+||||++.+
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQ 24 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQ 24 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHH
T ss_pred CCcceEEEECCCCCcHHHHHHH
Confidence 3578999999999999999754
No 205
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.84 E-value=7.5e-06 Score=58.30 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++++|.+|+|||||++.+++.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999998864
No 206
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.78 E-value=8.1e-07 Score=58.51 Aligned_cols=49 Identities=8% Similarity=0.155 Sum_probs=36.1
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 110 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 167 (181)
T 3t5g_A 110 VQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT-AVDVFRRIILEA 167 (181)
T ss_dssp --CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHH-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCC-HHHHHHHHHHHH
Confidence 478999999999986433211 112 4578899999999 999999888776
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.78 E-value=2.2e-05 Score=63.20 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=32.2
Q ss_pred CCccccccCCccccccccccccccc-CCCcccCCCCCCceeeEEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 31 VTPIVSEQGDGEIIEIIDPSLKLVR-VPSIRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 31 ~~~is~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
+...++....| +.++++.+.+... +.... ........+|+|+|.+++|||||+|++++..+
T Consensus 15 ~~~~~~~~~~~-~~~li~~inkl~d~l~~lg---~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 15 VPRGSHMGNRG-MEDLIPLVNRLQDAFSAIG---QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp ----------C-GGGHHHHHHHHHHHHHTTT---CCGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCccccccccc-HHHHHHHHHHHHHHHHhcC---ccccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 44456666667 6776655433211 00000 01122345899999999999999999998766
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.74 E-value=7.2e-05 Score=56.56 Aligned_cols=27 Identities=19% Similarity=0.588 Sum_probs=23.0
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhCcC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF 95 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~~~ 95 (131)
..++++++|.+|+|||||++.+++..+
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 446799999999999999999887643
No 209
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.62 E-value=1.9e-05 Score=50.60 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCCcEEeeccCCCccccccccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+......++ ...+++|++++.| +.++++.+.+.+
T Consensus 107 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l 160 (161)
T 2dyk_A 107 KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARG-LEELLEAIWERL 160 (161)
T ss_dssp HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBS-HHHHHHHHHHHC
T ss_pred cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCC-hHHHHHHHHHhC
Confidence 478999999999997654333333 3678999999999 999988776654
No 210
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.46 E-value=0.00015 Score=55.08 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=38.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC------------------cCCC---CccCCceeEeEEEE--EEecCCeEEEEEEE
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN------------------TFKK---DYKGTVGVDFALKI--VKWRDQQKIKLQLW 125 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~------------------~~~~---~~~~t~~~~~~~~~--~~~~~~~~~~l~i~ 125 (131)
...-|.|+|.+++|||+|+|++++. .|.. ....|.|+...... ....++....+-+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4556999999999999999999853 2321 11123343221100 11125566788999
Q ss_pred eCCCC
Q psy10878 126 DIAGQ 130 (131)
Q Consensus 126 Dt~Gq 130 (131)
||+|.
T Consensus 146 DTeG~ 150 (447)
T 3q5d_A 146 DTQGT 150 (447)
T ss_dssp EEECC
T ss_pred cCCcc
Confidence 99995
No 211
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.40 E-value=2.6e-05 Score=50.30 Aligned_cols=49 Identities=8% Similarity=0.090 Sum_probs=35.9
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 105 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 162 (166)
T 3q72_A 105 DDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN-VQALFEGVVRQI 162 (166)
T ss_dssp -CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCC-HHHHHHHHHHHH
Confidence 478999999999996543221 111 4568899999999 999988776554
No 212
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.34 E-value=6.1e-05 Score=54.36 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=39.0
Q ss_pred ccCCCcEEeeccCCCcc-cccccc---c-------ccCCCCccccccCCcccccccccccccc
Q psy10878 3 YKAKKPILLPSASEDPS-IDNWDK---A-------SWENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~-~~~~~~---~-------~~~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+..++|+++|+||+|+. ...... . .+..++++||.++.| +.++++.+.+.+
T Consensus 119 ~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~g-v~~L~~~l~~~l 180 (308)
T 3iev_A 119 KPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGAN-LDELVKTILKYL 180 (308)
T ss_dssp GGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBS-HHHHHHHHHHHS
T ss_pred HhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCC-HHHHHHHHHHhC
Confidence 44579999999999997 332111 1 125678999999999 999999888877
No 213
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.34 E-value=4.9e-05 Score=49.91 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=37.4
Q ss_pred CCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+..... ..+ ..++++||.++.| +.++++.+.+.+
T Consensus 108 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 164 (189)
T 4dsu_A 108 EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQG-VDDAFYTLVREI 164 (189)
T ss_dssp SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999997543222 122 5678999999999 999998876655
No 214
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.33 E-value=1.4e-05 Score=52.52 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCCcEEeeccCCCcccccccccc-c-CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKAS-W-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~~-~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+......... . ..++++||+++.| +.++++.+.+.+
T Consensus 114 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~ 164 (172)
T 2gj8_A 114 AKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEG-VDVLRNHLKQSM 164 (172)
T ss_dssp TTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTT-HHHHHHHHHHHC
T ss_pred cCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCC-HHHHHHHHHHHh
Confidence 36899999999999643222211 1 4578999999999 999999887766
No 215
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.32 E-value=3.7e-05 Score=49.68 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 108 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~i 165 (169)
T 3q85_A 108 HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN-TRELFEGAVRQI 165 (169)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCC-HHHHHHHHHHHH
Confidence 378999999999996432211 111 4568999999999 999988776654
No 216
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.25 E-value=4.6e-05 Score=49.44 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=35.6
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 110 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 167 (175)
T 2nzj_A 110 DHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHN-VAELFEGVVRQL 167 (175)
T ss_dssp --CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 378999999999996542211 112 3578999999999 999988876654
No 217
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.24 E-value=8.7e-05 Score=49.61 Aligned_cols=49 Identities=6% Similarity=-0.036 Sum_probs=32.0
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ...+++|++.+.| +.++++.+.+.+
T Consensus 137 ~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g-v~~l~~~l~~~l 194 (199)
T 3l0i_B 137 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN-VEQSFMTMAAEI 194 (199)
T ss_dssp CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HH-HHHHHHHHTTTT
T ss_pred CCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 37899999999999654311 1122 5678999999999 999988877765
No 218
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.24 E-value=4.3e-05 Score=60.05 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=55.2
Q ss_pred cCCCcEEeeccCCCcccccc--ccccc--------CCCCccccccCCcccccccccccccccCCCcccCCCCCCceeeEE
Q psy10878 4 KAKKPILLPSASEDPSIDNW--DKASW--------ENVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKV 73 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~--~~~~~--------~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 73 (131)
..+.|+++|+||+|+..... ...++ .+++++||+++.| +.++++.+.+.+..|... ....+..
T Consensus 121 ~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~G-I~~Ll~~I~~~lp~p~~~------~~~p~~a 193 (599)
T 3cb4_D 121 EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVG-VQDVLERLVRDIPPPEGD------PEGPLQA 193 (599)
T ss_dssp HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTT-HHHHHHHHHHHSCCCCCC------TTSCCEE
T ss_pred HCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCC-chhHHHHHhhcCCCcccc------ccCCcee
Confidence 35789999999999965321 11122 3589999999999 999999998887433211 2223333
Q ss_pred EEEc---CCCCCchhhhhhhhh
Q psy10878 74 IVIG---DPTVGKTSFVQRYVQ 92 (131)
Q Consensus 74 ~vvG---~~~vGKSsli~~~~~ 92 (131)
+++. ++++|+.++...+.+
T Consensus 194 lI~d~~~d~~~G~v~~~rV~sG 215 (599)
T 3cb4_D 194 LIIDSWFDNYLGVVSLIRIKNG 215 (599)
T ss_dssp EEEEEEEETTTEEEEEEEEEES
T ss_pred eeeeccccccccEEEEEEEEeC
Confidence 3333 378999988876654
No 219
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.23 E-value=4.3e-05 Score=51.35 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=35.5
Q ss_pred CCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+....... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 125 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 180 (213)
T 3cph_A 125 EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDN-VNEIFFTLAKLI 180 (213)
T ss_dssp CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 68999999999994332111 112 4678999999999 999988776554
No 220
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.23 E-value=8.7e-05 Score=48.26 Aligned_cols=49 Identities=10% Similarity=0.185 Sum_probs=36.5
Q ss_pred CCCcEEeeccCCCcccccccc---ccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+..... ..+ ...+++|++++.| +.++++.+.+.+
T Consensus 115 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (177)
T 1wms_A 115 ESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATN-VAAAFEEAVRRV 172 (177)
T ss_dssp TTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 578999999999996432211 111 4578999999999 999988776654
No 221
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=5.4e-05 Score=48.82 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+....... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 108 ~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 165 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN-VKELFQELLNLE 165 (172)
T ss_dssp -CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS-HHHHHHHHHHTC
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcC-HHHHHHHHHHHH
Confidence 368999999999996543211 111 3568999999999 999999888766
No 222
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.21 E-value=5.7e-05 Score=48.53 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCccccccc----cccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+.... ...+ ..++++||+++.| +.++++.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN-VNEIFYDLVRQI 165 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCC-HHHHHHHHHHHH
Confidence 47899999999999654321 1111 3468899999999 999988776543
No 223
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.18 E-value=6.7e-05 Score=48.84 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=36.5
Q ss_pred CCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|+||+|+.+..... ..+ ..++++|+.++.| +.++++.+.+.+
T Consensus 113 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 169 (181)
T 3tw8_B 113 DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN-VEEMFNCITELV 169 (181)
T ss_dssp TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 68999999999986543211 111 5678999999999 999998876654
No 224
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.17 E-value=6.9e-05 Score=50.71 Aligned_cols=49 Identities=8% Similarity=-0.061 Sum_probs=35.5
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ..++++||+++.| +.++++.+.+.+
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 173 (218)
T 4djt_A 116 NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN-FGLPFLHLARIF 173 (218)
T ss_dssp SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT-TTHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC-HHHHHHHHHHHH
Confidence 368999999999996542111 111 4578999999999 999998887665
No 225
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.16 E-value=3.2e-05 Score=49.59 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 164 (167)
T 1kao_A 107 EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM-VDELFAEIVRQM 164 (167)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHH-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcC-HHHHHHHHHHHH
Confidence 479999999999986543211 112 4678999999999 999888776543
No 226
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.14 E-value=8.3e-05 Score=47.91 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=36.3
Q ss_pred CCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+....... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 163 (170)
T 1g16_A 107 DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDN-VNEIFFTLAKLI 163 (170)
T ss_dssp TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 478999999999994432211 112 4678999999999 999988776654
No 227
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=9e-05 Score=48.33 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=37.2
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 115 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (180)
T 2g6b_A 115 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN-VDLAFTAIAKEL 172 (180)
T ss_dssp TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 578999999999997543211 112 4678999999999 999998887665
No 228
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=7.7e-05 Score=49.49 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=37.2
Q ss_pred CCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+..... ..+ ..++++||.++.| +.++++.+.+.+
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 169 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYN-VKELFQELLTLE 169 (199)
T ss_dssp GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBS-HHHHHHHHHHHC
T ss_pred CCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 368999999999997533221 111 3578999999999 999999887765
No 229
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.13 E-value=0.00011 Score=48.19 Aligned_cols=50 Identities=6% Similarity=-0.007 Sum_probs=36.5
Q ss_pred cCCCcEEeeccCCCcccccccc----ccc-----CCCCccccc-cCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSE-QGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~-~~~~~~~~~~~~~~~~~ 54 (131)
..+.|+++|+||+|+.+..... ..+ ...+++|++ ++.| +.++++.+.+.+
T Consensus 121 ~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~-v~~l~~~l~~~i 180 (183)
T 3kkq_A 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN-VDKTFHDLVRVI 180 (183)
T ss_dssp SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS-HHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 3578999999999986532211 112 567889999 9999 999988776543
No 230
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.12 E-value=2.1e-05 Score=53.13 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=36.4
Q ss_pred CCcEEeeccCCCcccccc------------ccccc----C--CCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW------------DKASW----E--NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~------------~~~~~----~--~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|+||+|+.+... ...++ + ..+++||+++.| +.++++.+.+.+
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 178 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTAIKVV 178 (212)
T ss_dssp TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCC-HHHHHHHHHHHH
Confidence 789999999999865321 11111 2 678999999999 999999887765
No 231
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.11 E-value=0.0001 Score=47.00 Aligned_cols=49 Identities=8% Similarity=0.141 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... .++ ..++++|+.++.| +.++++.+.+.+
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 163 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQG-VEDAFYTLVREI 163 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 378999999999986532211 122 4678999999999 999988776544
No 232
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.11 E-value=8.9e-05 Score=48.16 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=36.1
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ..++ ...+++|++++.| +.++++.+.+.+
T Consensus 119 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 176 (179)
T 1z0f_A 119 PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN-VEDAFLEAAKKI 176 (179)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 47899999999999653221 1122 4578999999999 999988776544
No 233
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.11 E-value=6.5e-05 Score=48.17 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=36.1
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ...+++|+.++.| +.++++.+.+.+
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN-VDKVFFDLMREI 165 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 378999999999996542211 111 4578999999999 999988776543
No 234
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.10 E-value=0.00024 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
....+.++|.+|+|||||+|++++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 235
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.10 E-value=8.4e-05 Score=49.18 Aligned_cols=49 Identities=4% Similarity=0.048 Sum_probs=36.7
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... .++ ..++++|++++.| +.++++.+.+.+
T Consensus 126 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~i 183 (189)
T 2gf9_A 126 DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN-VKQVFERLVDVI 183 (189)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 478999999999996543211 122 4578999999999 999988776654
No 236
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=8.5e-05 Score=50.80 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCccccccc-c---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-K---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|++||.||+|+.+.... . ..+ ...+.+||+++.| +.++++.+.+.+
T Consensus 144 ~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~-v~elf~~l~~~i 201 (211)
T 2g3y_A 144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN-VKELFEGIVRQV 201 (211)
T ss_dssp TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 37899999999999653211 1 111 3567899999999 999998877654
No 237
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=8.6e-05 Score=49.26 Aligned_cols=49 Identities=4% Similarity=0.005 Sum_probs=36.6
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 127 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 184 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS-VRQAFERLVDAI 184 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 478999999999996543221 112 4678999999999 999988776654
No 238
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.09 E-value=6.9e-05 Score=48.79 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=36.8
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 113 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 170 (181)
T 2fn4_A 113 DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN-VDEAFEQLVRAV 170 (181)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 478999999999996543211 112 4578999999999 999998877665
No 239
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.08 E-value=0.00011 Score=47.87 Aligned_cols=49 Identities=8% Similarity=0.001 Sum_probs=37.1
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 116 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 173 (181)
T 2efe_B 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN-VKEIFYEIARRL 173 (181)
T ss_dssp TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTT-HHHHHHHHHHTC
T ss_pred CCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 378899999999996543211 112 3578999999999 999999887766
No 240
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.08 E-value=0.00015 Score=49.24 Aligned_cols=48 Identities=10% Similarity=-0.031 Sum_probs=36.8
Q ss_pred CCcEEeeccCCCcccccccc--ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK--ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~--~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 119 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~l 173 (221)
T 3gj0_A 119 NIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN-FEKPFLWLARKL 173 (221)
T ss_dssp TCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBT-TTHHHHHHHHHH
T ss_pred CCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 78999999999996543221 122 5578999999999 999998876655
No 241
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.07 E-value=0.00013 Score=48.34 Aligned_cols=49 Identities=6% Similarity=-0.030 Sum_probs=37.1
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+....... ..+ ...+++|++++.| +.++++.+.+.+
T Consensus 120 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~i 177 (196)
T 3tkl_A 120 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN-VEQSFMTMAAEI 177 (196)
T ss_dssp TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 378999999999996543211 122 5678999999999 999988877665
No 242
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.06 E-value=0.0001 Score=49.25 Aligned_cols=49 Identities=6% Similarity=0.068 Sum_probs=36.6
Q ss_pred CCCcEEeeccCCCcccccccc---ccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+..... ..+ ..++++||+++.| +.++++.+.+.+
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 173 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN-VEQAFQTIARNA 173 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999997433211 111 4578999999999 999998876654
No 243
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.06 E-value=0.00023 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhhC
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
..++++|.+|+|||||+|.+++-
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999998873
No 244
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.05 E-value=0.00012 Score=47.15 Aligned_cols=49 Identities=6% Similarity=-0.058 Sum_probs=36.1
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+..... ..+ ...+++|++++.| +.++++.+.+.+
T Consensus 110 ~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~i~~~i 167 (170)
T 1z0j_A 110 PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN-INELFIEISRRI 167 (170)
T ss_dssp TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS-HHHHHHHHHHHC
T ss_pred CCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC-HHHHHHHHHHHH
Confidence 467899999999996543221 112 4568899999999 999988776654
No 245
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.05 E-value=0.00013 Score=47.88 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=36.9
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+.... ...+ ..++++|++++.| +.++++.+.+.+
T Consensus 126 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 183 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN-ISHAIEMLLDLI 183 (195)
T ss_dssp SSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCC-HHHHHHHHHHHH
Confidence 57899999999999653211 1112 4678999999999 999988776654
No 246
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.04 E-value=8.9e-05 Score=48.16 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=36.7
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 175 (179)
T 2y8e_A 118 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN-VKQLFRRVAAAL 175 (179)
T ss_dssp TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS-HHHHHHHHHHTC
T ss_pred CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999996543211 111 4568999999999 999988877665
No 247
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.04 E-value=0.00028 Score=47.01 Aligned_cols=22 Identities=45% Similarity=0.910 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
+++++|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999987753
No 248
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.03 E-value=0.00018 Score=46.80 Aligned_cols=49 Identities=4% Similarity=-0.051 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCccccccc-----cccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-----KASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-----~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ..++++|++++.| +.++++.+.+.+
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 176 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN-VDTAFEEIARSA 176 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 57899999999999543211 1111 4568999999999 999988776544
No 249
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.01 E-value=0.00016 Score=47.76 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=37.0
Q ss_pred CCCcEEeeccCCCcccccccc---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+....... .++ ..++++|+.++.| +.++++.+.+.+
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 181 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQG-VEDAFYTLVREI 181 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999986532211 122 4678999999999 999998877655
No 250
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.01 E-value=0.00013 Score=48.60 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=36.8
Q ss_pred CCCcEEeeccCCCccccccc-c---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-K---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+.... . ..+ ..++++|+.++.| +.++++.+.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~i 175 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN-VDKVFFDLMREI 175 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 37899999999999654221 1 112 4578999999999 999998876654
No 251
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.00 E-value=8.8e-05 Score=48.92 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=36.6
Q ss_pred cCCCcEEeeccCCCcccccccc------ccc------CCCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWDK------ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~------~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..++|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 131 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l 192 (195)
T 3pqc_A 131 SLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEG-ISELLDLISTLL 192 (195)
T ss_dssp HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred HcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCC-HHHHHHHHHHHh
Confidence 3478999999999996432111 111 2678899999999 999998877654
No 252
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.00 E-value=9.9e-05 Score=48.27 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=36.3
Q ss_pred CCCcEEeeccCCCccccccc-c---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-K---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+.... . ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN-VDKVFFDLMREI 179 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 37899999999999653211 1 111 4568999999999 999988876654
No 253
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.99 E-value=0.00015 Score=53.27 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=38.2
Q ss_pred CCCcEEeeccCCCccccccccc----cc---CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKA----SW---ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~----~~---~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+........ .+ ..++++||.++.| +.++++.+.+.+
T Consensus 273 ~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~g-i~eL~~~l~~~l 328 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREG-LRELLFEVANQL 328 (342)
T ss_dssp TTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSST-THHHHHHHHHHH
T ss_pred cCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcC-HHHHHHHHHHHH
Confidence 4799999999999975432222 22 2678999999999 999999887776
No 254
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.99 E-value=0.00021 Score=47.19 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=34.2
Q ss_pred cCCCcEEeeccCCCccccccc----cccc-----CCCCccccccC---Ccccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQG---DGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~---~~~~~~~~~~~~~~~ 54 (131)
..++|+++|+||+|+.+.... ...+ ...+++|++.+ .+ +.++++.+.+.+
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~-i~~l~~~l~~~i 186 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH-VEAIFMTLAHKL 186 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC-HHHHHHHHC---
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC-HHHHHHHHHHHH
Confidence 457899999999999654221 1122 45788999999 88 888877766554
No 255
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.98 E-value=0.00013 Score=48.65 Aligned_cols=49 Identities=6% Similarity=0.032 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 112 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 169 (203)
T 1zbd_A 112 DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN-VKQTFERLVDVI 169 (203)
T ss_dssp SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 478999999999996543211 112 4678999999999 998888776554
No 256
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.98 E-value=0.00017 Score=47.61 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=36.6
Q ss_pred CCCcEEeeccCCCccccc--cccccc-----C-CCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKASW-----E-NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~~~-----~-~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.. ....++ . ..+++||+++.| +.++++.+.+.+
T Consensus 134 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~i 190 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKG-VFETLKEVSRLV 190 (198)
T ss_dssp TSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcC-HHHHHHHHHHHH
Confidence 578999999999996542 111122 3 678999999999 999988776654
No 257
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.97 E-value=7.6e-05 Score=48.15 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ...+++||+++.| +.++++.+.+.+
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (170)
T 1z08_A 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG-IEELFLDLCKRM 167 (170)
T ss_dssp GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 46899999999999653211 1112 4578999999999 999988776543
No 258
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.97 E-value=0.00014 Score=46.76 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=36.3
Q ss_pred CCCcEEeeccCCCccccc---ccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN---WDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~---~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.. ... ..+ ..++++||+++.| +.++++.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 167 (170)
T 1ek0_A 107 KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN-VNDVFLGIGEKI 167 (170)
T ss_dssp TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTT-HHHHHHHHHTTS
T ss_pred CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999996542 111 111 4578999999999 999988877655
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00034 Score=46.38 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|.+|+|||||++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 260
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.95 E-value=0.00012 Score=48.63 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=37.0
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ..++ ..++++|++.+.| +.++++.+.+.+
T Consensus 127 ~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 184 (192)
T 2fg5_A 127 ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN-IEELFQGISRQI 184 (192)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS-HHHHHHHHHHTC
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC-HHHHHHHHHHHH
Confidence 37899999999999653211 1112 3468999999999 999999887766
No 261
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.95 E-value=0.00012 Score=46.98 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ...+++|++++.| +.++++.+.+.+
T Consensus 110 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~i~~~~ 167 (170)
T 1r2q_A 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN-VNEIFMAIAKKL 167 (170)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT-HHHHHHHHHHTS
T ss_pred CCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 36789999999999653211 1112 3467899999999 999998887665
No 262
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.94 E-value=0.00012 Score=46.92 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=35.7
Q ss_pred CCCcEEeeccCCCcccccc---ccccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+... ....+ ..++++||+++.| +.++++.+.+.+
T Consensus 100 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 160 (164)
T 1r8s_A 100 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG-LYEGLDWLSNQL 160 (164)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHC
T ss_pred cCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC-HHHHHHHHHHHH
Confidence 3789999999999965311 11111 1367899999999 999988877655
No 263
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.94 E-value=6.7e-05 Score=48.74 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCcccccc---ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+..... ....+ ...+++||+++.| +.++++.+.+.+
T Consensus 107 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~-v~~l~~~l~~~~ 163 (165)
T 2wji_A 107 MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG-IEELKKAISIAV 163 (165)
T ss_dssp TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS-HHHHHHHHHHHT
T ss_pred cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCC-HHHHHHHHHHHh
Confidence 4789999999999854321 11222 4568999999999 999988776543
No 264
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.92 E-value=0.00017 Score=48.74 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=36.6
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+.... ..++ ..++++|++++.| +.++++.+.+.+
T Consensus 140 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~i 197 (217)
T 2f7s_A 140 ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQN-VEKAVETLLDLI 197 (217)
T ss_dssp TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 57899999999999653221 1122 4578999999999 999988876654
No 265
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.92 E-value=0.00012 Score=47.04 Aligned_cols=49 Identities=10% Similarity=-0.048 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ...+++|++++.| +.++++.+.+.+
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 165 (168)
T 1z2a_A 108 GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN-VSEVFKYLAEKH 165 (168)
T ss_dssp CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 37899999999999653221 1112 4578999999999 999888766543
No 266
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.92 E-value=0.00015 Score=48.13 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ...+++|++++.| +.++++.+.+.+
T Consensus 125 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 182 (191)
T 2a5j_A 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN-VEEAFINTAKEI 182 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 47899999999999653221 1122 4568899999999 999988776554
No 267
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.90 E-value=0.00013 Score=47.80 Aligned_cols=49 Identities=4% Similarity=-0.114 Sum_probs=31.5
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ..++++||+++.| +.++++.+.+.+
T Consensus 112 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~i 169 (183)
T 2fu5_C 112 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN-VENAFFTLARDI 169 (183)
T ss_dssp TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CC-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 46899999999999653211 1122 4578999999999 999988876654
No 268
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.89 E-value=8.6e-05 Score=52.29 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=38.3
Q ss_pred ccCCCcEEeeccCCCccccccc---cccc-----CCCCccccccCCccccccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNWD---KASW-----ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~---~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
+..++|+++|+||+|+.+.... ...+ ..++++||.++.| +.++++.+.+.
T Consensus 107 ~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~g-i~el~~~i~~~ 164 (256)
T 3iby_A 107 FELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIG-IPALQQSLLHC 164 (256)
T ss_dssp TTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBS-HHHHHHHHHTC
T ss_pred HHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCC-HHHHHHHHHhh
Confidence 3458999999999998654321 1122 5678999999999 99999888776
No 269
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.89 E-value=0.0002 Score=51.55 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=38.1
Q ss_pred cCCCcEEeeccCCCccc-cccc---cccc------CCCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSI-DNWD---KASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~-~~~~---~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..++|+++++||+|+.. .... ..++ ..++++|+.++.| +.++++.+...+
T Consensus 114 ~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~-v~~l~~~i~~~l 173 (301)
T 1ega_A 114 EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN-VDTIAAIVRKHL 173 (301)
T ss_dssp SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT-HHHHHHHHHTTC
T ss_pred hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC-HHHHHHHHHHhC
Confidence 45899999999999975 2211 1111 3578999999999 999999988776
No 270
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.88 E-value=0.00011 Score=48.66 Aligned_cols=48 Identities=13% Similarity=-0.022 Sum_probs=36.2
Q ss_pred CCcEEeeccCCCccccc---cccccc----------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDN---WDKASW----------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~---~~~~~~----------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+.... .....+ ..++++||+++.| +.++++.+.+.+
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 187 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTG-VHEGFSWLQETA 187 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBT-HHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccC-HHHHHHHHHHHH
Confidence 88999999999997652 111111 2358999999999 999999887765
No 271
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.87 E-value=8e-05 Score=49.86 Aligned_cols=49 Identities=10% Similarity=0.113 Sum_probs=36.7
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+....... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 128 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~i 185 (201)
T 3oes_A 128 TRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQL-TQGIFTKVIQEI 185 (201)
T ss_dssp -CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHH-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999986543211 112 5568899999999 999998887765
No 272
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.87 E-value=0.00013 Score=48.11 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCccccc---cccccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN---WDKASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~---~~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+.. .....+ -.++++|++++.| +.++++.+.+.+
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 182 (189)
T 2x77_A 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDG-LVEGMDWLVERL 182 (189)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccC-HHHHHHHHHHHH
Confidence 478999999999996542 111111 1468899999999 999988877655
No 273
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.86 E-value=0.00019 Score=48.02 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=37.0
Q ss_pred CCCcEEeeccCCCccccccc-c---ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-K---ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-~---~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|.||+|+.+.... . ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~-v~~lf~~l~~~i 186 (195)
T 3cbq_A 129 HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN-TRELFEGAVRQI 186 (195)
T ss_dssp SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCC-HHHHHHHHHHHH
Confidence 47899999999999653211 1 112 3578999999999 999998887765
No 274
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.86 E-value=0.00018 Score=47.64 Aligned_cols=49 Identities=12% Similarity=-0.044 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCcccccc---ccccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+..... ....+ ...+++||+++.| +.++++.+.+.+
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~ 183 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN-IDITLQWLIQHS 183 (188)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 5789999999999965311 11111 2357999999999 999999887766
No 275
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.85 E-value=0.00022 Score=47.77 Aligned_cols=49 Identities=6% Similarity=-0.063 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ..++++||.++.| +.++++.+.+.+
T Consensus 112 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~i 169 (206)
T 2bcg_Y 112 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN-VEDAFLTMARQI 169 (206)
T ss_dssp TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 46899999999999653211 1112 4578999999999 999998876654
No 276
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.84 E-value=0.00017 Score=48.57 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ...+++||+++.| +.++++.+.+.+
T Consensus 130 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~i 187 (201)
T 2ew1_A 130 NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN-VEKLFLDLACRL 187 (201)
T ss_dssp TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 46899999999999653221 1122 4568899999999 999988776654
No 277
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.84 E-value=0.0002 Score=49.15 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=36.3
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|++||.||+|+.+..... ..| ...+.+||+++.| +.++++.+.+.+
T Consensus 117 ~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~n-V~e~F~~i~~~i 174 (216)
T 4dkx_A 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN-VKQLFRRVAAAL 174 (216)
T ss_dssp TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS-HHHHHHHHHHHC
T ss_pred CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcC-HHHHHHHHHHHH
Confidence 467999999999996643211 122 4457799999999 999998876655
No 278
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.84 E-value=0.00015 Score=48.26 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=35.4
Q ss_pred CCCcEEeeccCCCcccccccc----ccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+..... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 130 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 188 (192)
T 2il1_A 130 EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN-VDEIFLKLVDDI 188 (192)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999996532211 112 3467899999999 999988776543
No 279
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.83 E-value=0.00015 Score=48.01 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+....... ..+ ..++++|++++.| +.++++.+.+.+
T Consensus 129 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (193)
T 2oil_A 129 ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN-VELAFETVLKEI 186 (193)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 478999999999996532211 112 4568899999999 999988776543
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.82 E-value=0.00051 Score=46.29 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998874
No 281
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.81 E-value=0.00034 Score=46.48 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=33.4
Q ss_pred CCCcEEeeccCCCccccc--cccccc-----------------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKASW-----------------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~~~-----------------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+.+.. ....++ ...+++||+++.| +.++++.+.+
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~ 188 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG-YLEAFQWLSQ 188 (190)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS-HHHHHHHHHT
T ss_pred cCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC-HHHHHHHHHh
Confidence 578999999999996521 111111 1367899999999 9988877654
No 282
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.80 E-value=0.00016 Score=47.75 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=36.7
Q ss_pred CCCcEEeeccCCCcccccc--cc-cc-----c----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DK-AS-----W----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~-~~-----~----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+... .. .. + ..++++||+++.| +.++++.+.+.+
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 176 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG-LCQGLEWMMSRL 176 (187)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 5789999999999965311 11 11 1 2467899999999 999999888776
No 283
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.79 E-value=0.00022 Score=47.33 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=35.8
Q ss_pred CCcEEeeccCCCccccc---ccc---ccc------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDN---WDK---ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~---~~~---~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|+||+|+.+.. ... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 127 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (194)
T 3reg_A 127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG-LNEVFEKSVDCI 186 (194)
T ss_dssp TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 68999999999996431 111 111 3378999999999 999998887765
No 284
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.77 E-value=0.00015 Score=47.40 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=35.6
Q ss_pred CCCcEEeeccCCCccccc--ccccc-c---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKAS-W---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~~-~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+.. ....+ + ..++++|++++.| +.++++.+.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 178 (183)
T 1moz_A 118 QDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG-ITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT-HHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 578999999999996531 11111 1 1468899999999 999988776654
No 285
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.76 E-value=0.00021 Score=47.58 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCC-cccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGD-GEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~-~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ...+++|++++. | +.++++.+.+.+
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g-i~~l~~~l~~~i 189 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN-ITEIFYELCREV 189 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC-HHHHHHHHHHHH
Confidence 47899999999999653211 1112 457889999999 8 999988776654
No 286
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.80 E-value=0.00022 Score=47.76 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=34.0
Q ss_pred CCcEEeeccCCCcccccc----------------ccccc-----C-CCCccccccCCccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW----------------DKASW-----E-NVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~----------------~~~~~-----~-~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
++|+++|+||+|+.+... ....+ . ..+++||+++.| +.++++.+.+.
T Consensus 134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~g-i~~l~~~l~~~ 202 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRA 202 (204)
Confidence 789999999999965321 01111 1 578899999999 99888876553
No 287
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.76 E-value=0.00078 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~ 91 (131)
+.-+|+++|-..+|||||.-+++
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHH
Confidence 34589999999999999999986
No 288
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.76 E-value=0.00016 Score=48.16 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=35.6
Q ss_pred CCCcEEeeccCCCcccccc---ccccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+..... ....+ ...+++||+++.| +.++++.+.+.+
T Consensus 129 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 189 (192)
T 2b6h_A 129 RDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG-LYDGLDWLSHEL 189 (192)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHT
T ss_pred CCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCC-HHHHHHHHHHHH
Confidence 4789999999999965421 11111 1367899999999 999988877654
No 289
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.76 E-value=0.00027 Score=46.52 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=36.1
Q ss_pred CCCcEEeeccCCCcccccc--cc-ccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DK-ASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~-~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+... .. ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 176 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG-VQDGMNWVCKNV 176 (181)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHTC
T ss_pred cCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 5789999999999965321 11 111 1367899999999 999998887765
No 290
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.76 E-value=0.00022 Score=47.82 Aligned_cols=49 Identities=12% Similarity=-0.045 Sum_probs=36.5
Q ss_pred CCCcEEeeccCCCcccccc----ccccc-----C-CCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW----DKASW-----E-NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~----~~~~~-----~-~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+... ...++ . ..+++||+++.| +.++++.+.+.+
T Consensus 133 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 191 (201)
T 2hup_A 133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN-VEEAFLRVATEL 191 (201)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4689999999999965321 11122 2 568999999999 999998877655
No 291
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.75 E-value=0.00014 Score=46.94 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=35.9
Q ss_pred CCCcEEeeccCCCcccccc---ccccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+... ....+ -.++++|++++.| +.++++.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 167 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG-LDEAMEWLVETL 167 (171)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcC-HHHHHHHHHHHH
Confidence 5789999999999965421 11111 1468899999999 999988776654
No 292
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.74 E-value=0.00034 Score=46.85 Aligned_cols=49 Identities=16% Similarity=-0.024 Sum_probs=34.5
Q ss_pred CCCcEEeeccCCCccccc--cccccc----------------------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKASW----------------------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~~~----------------------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.... ....++ ...+++||+++.| +.++++.+.+.+
T Consensus 125 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~l 197 (198)
T 1f6b_A 125 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQG-YGEGFRWMAQYI 197 (198)
T ss_dssp TTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBS-HHHHHHHHHTTC
T ss_pred CCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCC-HHHHHHHHHHhc
Confidence 579999999999996421 111111 2367899999999 999888776543
No 293
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.73 E-value=0.00021 Score=46.79 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=35.9
Q ss_pred CCCcEEeeccCCCcccccccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+....... ..+ ...+++|++++.| +.++++.+.+.+
T Consensus 114 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 171 (186)
T 2bme_A 114 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN-VEEAFVQCARKI 171 (186)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 578999999999996432111 112 3468899999999 999988776554
No 294
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.71 E-value=0.00018 Score=47.26 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=33.9
Q ss_pred CCCcEEeeccCCCccccc--ccccc-c---------CCCCccccccCCcccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN--WDKAS-W---------ENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~--~~~~~-~---------~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
.++|+++|+||+|+.... ....+ + ...+++||+++.| +.++++.+.+
T Consensus 121 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~ 179 (181)
T 2h17_A 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG-LCQGLEWMMS 179 (181)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT-HHHHHHHHHT
T ss_pred CCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcC-HHHHHHHHHh
Confidence 578999999999996531 11111 1 1468899999999 9988877654
No 295
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.71 E-value=0.00018 Score=47.54 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=36.4
Q ss_pred cCCCcEEeeccCCCccccccc------ccc-c-----CCCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWD------KAS-W-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~------~~~-~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..+.|+++|+||+|+.+.... ..+ + ..++++|++++.| +.++++.+.+.+
T Consensus 132 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l 193 (195)
T 1svi_A 132 YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKG-KDEAWGAIKKMI 193 (195)
T ss_dssp HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred HcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCC-HHHHHHHHHHHh
Confidence 357899999999999654311 111 2 3568899999999 999988776544
No 296
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.70 E-value=0.00051 Score=53.37 Aligned_cols=52 Identities=15% Similarity=0.313 Sum_probs=37.6
Q ss_pred ccCCCcEEeeccCCCccccccc--c----------ccc---CCCCccccccCCccccccccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNWD--K----------ASW---ENVTPIVSEQGDGEIIEIIDPSLKLVR 55 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~--~----------~~~---~~~~~is~~~~~~~~~~~~~~~~~~~~ 55 (131)
+..+.|+++|+||+|+...... . ..| ..++++||+++.| +.++++.+...+.
T Consensus 101 ~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G-I~eLle~I~~l~~ 167 (537)
T 3izy_P 101 KDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGEN-MMALAEATIALAE 167 (537)
T ss_dssp HTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS-SHHHHHHHHHHHT
T ss_pred HHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCC-chhHHHHHHHhhh
Confidence 3467899999999998642211 1 111 1468999999999 9999998876653
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.70 E-value=0.00072 Score=45.95 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|++|+|||||++.++.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999884
No 298
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.69 E-value=5.5e-05 Score=51.31 Aligned_cols=51 Identities=12% Similarity=-0.057 Sum_probs=38.4
Q ss_pred ccCCCcEEeeccCCCccccccc---c-------cc--------cCCCCccccccCCcccccccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNWD---K-------AS--------WENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~---~-------~~--------~~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+..++|+++|+||+|+...... . .. ...++++|++++.| +.++++.+.+.+
T Consensus 141 ~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~ 209 (223)
T 4dhe_A 141 APTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTG-LDDAHALIESWL 209 (223)
T ss_dssp GGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred HhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcC-HHHHHHHHHHhc
Confidence 3457899999999999653321 0 11 13478999999999 999999888776
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.69 E-value=0.00071 Score=44.77 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|.+|+||||+++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999988753
No 300
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.68 E-value=0.0003 Score=46.95 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCCcEEeeccCCCccccccc-cc---cc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-KA---SW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-~~---~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|.||+|+.+.... .. .+ ...+++||+++.| +.++++.+.+.+
T Consensus 113 ~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~-v~~lf~~l~~~~ 170 (192)
T 2cjw_A 113 EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN-VKELFEGIVRQV 170 (192)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCC-HHHHHHHHHHHH
Confidence 36899999999999653211 11 11 3467899999999 999998776654
No 301
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.67 E-value=0.00021 Score=46.97 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=36.7
Q ss_pred CCCcEEeeccCCCccccc-cccccc----C--------CCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDN-WDKASW----E--------NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~-~~~~~~----~--------~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.... ....++ + .++++||+++.| +.++++.+.+.+
T Consensus 121 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 182 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDN-IERLKNRIFEVI 182 (190)
T ss_dssp TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCC-HHHHHHHHHHhc
Confidence 478999999999996543 112222 2 248999999999 999998887665
No 302
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.67 E-value=0.00079 Score=45.00 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|.+|+|||||++.+.+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999998875
No 303
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.65 E-value=0.00035 Score=52.16 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=36.0
Q ss_pred CCcEEeeccCCCcccccccc---ccc-----------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK---ASW-----------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~---~~~-----------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+|+++|+||+|+.+.+... .++ ..++++||.++.| +.++++.+.+.+
T Consensus 129 ~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g-i~~L~~~l~~~l 190 (403)
T 3sjy_A 129 VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKIN-IDSLIEGIEEYI 190 (403)
T ss_dssp CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBS-HHHHHHHHHHHS
T ss_pred CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcC-hHHHHHHHHHhC
Confidence 36899999999997543211 111 3478999999999 999999888765
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.65 E-value=0.00028 Score=46.55 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=34.2
Q ss_pred CCCcEEeeccCCCccccccccc---cc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWDKA---SW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~~~---~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+...... .+ ..++++||+++.| +.++++.+.+.+
T Consensus 146 ~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 202 (208)
T 3clv_A 146 SNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN-IKNIFYMLAEEI 202 (208)
T ss_dssp SCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCC-HHHHHHHHHHHH
Confidence 3589999999999432222111 12 4568999999999 999988776543
No 305
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.65 E-value=0.00014 Score=48.88 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=35.0
Q ss_pred CCCcEEeeccCCCccccccc-------------c---ccc------CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-------------K---ASW------ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-------------~---~~~------~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.++|+++|+||+|+...... . ..+ ...+++||+++.| +.++++.+.+.
T Consensus 133 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~ 202 (204)
T 4gzl_A 133 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRA 202 (204)
T ss_dssp SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHT
T ss_pred CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 37899999999999654210 0 011 2378899999999 99998877654
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.64 E-value=0.00079 Score=44.73 Aligned_cols=20 Identities=15% Similarity=0.557 Sum_probs=18.4
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
++++|.+|+|||||++.+++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998874
No 307
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.63 E-value=0.00024 Score=47.60 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+...... ...+ ...+++||+++.| +.++++.+.+.+
T Consensus 129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 186 (200)
T 2o52_A 129 PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN-VEEAFLKCARTI 186 (200)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 47899999999999643211 1112 3468899999999 999998776654
No 308
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.63 E-value=0.00087 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|++|+|||||++.+++.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999998753
No 309
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.63 E-value=0.00026 Score=45.99 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=35.2
Q ss_pred CCc-EEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKP-ILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp-~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++| +++|+||+|+.+.... ...+ ...+++||+++.| +.++++.+.+.+
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 171 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS-VFLCFQKVAAEI 171 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 456 7899999999653211 1122 4568999999999 999998887665
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.62 E-value=0.00071 Score=44.49 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCchhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRY 90 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~ 90 (131)
-++++|.+|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999943
No 311
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.62 E-value=0.00053 Score=51.75 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=39.3
Q ss_pred cCCCcEEeeccCCCccccccc--cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWD--KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~--~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..++|+++|+||+|+...... ..++ ..++++|++.+.| +.++++.+.+.+
T Consensus 138 ~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g-I~eL~~~L~~~l 194 (423)
T 3qq5_A 138 EMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG-FDDIGKTISEIL 194 (423)
T ss_dssp HTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS-TTTHHHHHHHHS
T ss_pred hcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC-HHHHHHHHHHhh
Confidence 457999999999999665422 1222 5678999999999 999999888777
No 312
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.60 E-value=0.00089 Score=45.25 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|++|+|||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998875
No 313
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.60 E-value=0.00038 Score=45.96 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=36.0
Q ss_pred CCCcEEeeccCCCcccccc--ccc------cc----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DKA------SW----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~~------~~----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+... ... .+ ..++++||+++.| +.++++.+.+.+
T Consensus 125 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 185 (190)
T 2h57_A 125 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEG-LQEGVDWLQDQI 185 (190)
T ss_dssp SCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHC
T ss_pred CCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 5789999999999965311 111 11 2467899999999 999998877665
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.58 E-value=0.00095 Score=44.92 Aligned_cols=20 Identities=15% Similarity=0.557 Sum_probs=18.6
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
|+++|++|+|||||+++++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999874
No 315
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.58 E-value=0.00014 Score=51.20 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=37.9
Q ss_pred cCCCcEEeeccCCCccccccc---cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWD---KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~---~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..++|+++|+||+|+.+.... ...+ ..++++||.++.| +.++++.+.+..
T Consensus 108 ~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~g-i~el~~~i~~~~ 165 (258)
T 3a1s_A 108 EMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEG-LEELKEKIVEYA 165 (258)
T ss_dssp TTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcC-HHHHHHHHHHHh
Confidence 357999999999998653221 1222 5678999999999 999999887654
No 316
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.58 E-value=0.00094 Score=45.68 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|++|+|||||++.+++
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998875
No 317
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.00027 Score=48.07 Aligned_cols=49 Identities=6% Similarity=-0.005 Sum_probs=34.4
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+...... ...+ ..++++|++++.| +.++++.+.+.+
T Consensus 117 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 174 (223)
T 3cpj_B 117 DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN-VDKAFEELINTI 174 (223)
T ss_dssp --CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCC-HHHHHHHHHHHH
T ss_pred CCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 36899999999999653211 1122 3567899999999 999998887665
No 318
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.57 E-value=0.001 Score=45.07 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|++|+||||+++.++..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999998854
No 319
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.54 E-value=0.00018 Score=51.89 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=37.3
Q ss_pred CCcEEeeccCCCcccccc-c---cc---ccCCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW-D---KA---SWENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~-~---~~---~~~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+..... . .. .+..++++||+++.| +.++++.+.+.+
T Consensus 117 ~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g-v~~l~~~l~~~l 171 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQ-VAELKADLLALM 171 (301)
T ss_dssp TSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHH-HHHHHHHHHTTC
T ss_pred CCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCC-HHHHHHHHHHhc
Confidence 799999999999975432 1 11 124578999999999 999999888766
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.53 E-value=0.0016 Score=44.01 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...+.++|.+|+|||||++.+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987663
No 321
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.53 E-value=0.00036 Score=45.82 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=36.1
Q ss_pred CCCcEEeeccCCCcccccc--cc-ccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DK-ASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~-~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+... .. ..+ ...+++|++++.| +.++++.+.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 178 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGED-LLPGIDWLLDDI 178 (186)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 4789999999999965321 11 111 2467899999999 999998887665
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.51 E-value=0.0012 Score=44.49 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|.+|+||||+++++..
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 323
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.00057 Score=45.19 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=35.1
Q ss_pred CCcEEeeccCCCccccc-------------ccc---ccc------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDN-------------WDK---ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~-------------~~~---~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|+||+|+.+.. ... ..+ ...+++|++++.| +.++++.+.+.+
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~i 191 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG-LKTVFDEAIIAI 191 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 78999999999996531 111 111 2678899999999 999988776543
No 324
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.50 E-value=0.0019 Score=47.16 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhhhhCcCCCC-------ccCCceeEeEEEEEEecCCeEEEEEEEeCCCCC
Q psy10878 87 VQRYVQNTFKKD-------YKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131 (131)
Q Consensus 87 i~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~Gqe 131 (131)
+.|+....+... +.||+| +....+.+ ..+.+++|||+|||
T Consensus 132 l~Ri~~~~Y~PT~~Dilr~r~~TiG--i~~~~~~~---~~v~l~iwDtgGQe 178 (327)
T 3ohm_A 132 LDRVADPSYLPTQQDVLRVRVPTTG--IIEYPFDL---QSVIFRMVDVGGQR 178 (327)
T ss_dssp HHHHHSTTCCCCHHHHTTCCCCCCS--EEEEEEEE---TTEEEEEEEECCSH
T ss_pred HHHHhccCCCccccchhcccCceee--EEEEEEEe---eceeeEEEEcCCch
No 325
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.50 E-value=0.00036 Score=46.46 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=26.7
Q ss_pred CCCcEEeeccCCCccc-cccc----cccc-----CCCCcccccc-CCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSI-DNWD----KASW-----ENVTPIVSEQ-GDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~-~~~~----~~~~-----~~~~~is~~~-~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+ .... ...+ ...+++|+++ +.| +.++++.+.+.+
T Consensus 131 ~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~g-i~~l~~~i~~~~ 190 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKD-ADAPFLSIATTF 190 (208)
T ss_dssp SCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC--------CHHHHHHHHHH
T ss_pred cCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcC-HHHHHHHHHHHH
Confidence 5789999999999976 2211 1122 4568899999 999 999988776654
No 326
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.00015 Score=47.68 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=37.6
Q ss_pred cCCCcEEeeccCCCcccccc---ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNW---DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~---~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..+.|+++|+||+|+..... ....+ ...+++|++.+.| +.++++.+.+.+
T Consensus 110 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~i~~~~ 167 (188)
T 2wjg_A 110 EMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG-IEELKKAISIAV 167 (188)
T ss_dssp TTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred hcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCC-HHHHHHHHHHHH
Confidence 35789999999999854321 12222 4578999999999 999999887766
No 327
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.48 E-value=0.00014 Score=51.61 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=37.9
Q ss_pred CCCcEEeeccCCCcccccc---ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+... ....+ ..++++||.++.| +.++++.+.+.+
T Consensus 111 ~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~g-i~el~~~i~~~~ 167 (274)
T 3i8s_A 111 LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRG-IEALKLAIDRYK 167 (274)
T ss_dssp HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHH-HHHHHHHHHTCC
T ss_pred cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCC-HHHHHHHHHHHH
Confidence 4789999999999865432 11122 5678999999999 999998887766
No 328
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.48 E-value=0.0018 Score=42.28 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..++++|.+|+||||+++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999987763
No 329
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.46 E-value=0.00025 Score=46.30 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=36.2
Q ss_pred CCcEEeeccCCCcccccc-------------cc---ccc------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW-------------DK---ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~-------------~~---~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+.+... .. ..+ ..++++||+++.| +.++++.+.+.+
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 178 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 178 (186)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccC-HHHHHHHHHHHH
Confidence 789999999999965321 00 011 2578999999999 999999887766
No 330
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.45 E-value=0.00038 Score=47.59 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=35.3
Q ss_pred CCcEEeeccCCCcccccccc-------ccc-------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK-------ASW-------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~-------~~~-------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+.+..... ..+ ..++++||+++.| +.++++.+.+.+
T Consensus 142 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 203 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVG-VEQAKITACELL 203 (228)
T ss_dssp CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCC-HHHHHHHHHHHH
Confidence 78999999999996543211 112 2468999999999 999998876655
No 331
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.45 E-value=0.00095 Score=49.87 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=29.7
Q ss_pred CcEEeeccCCCccccccc---c---ccc--------CCCCccccccCCccccccccccccccc
Q psy10878 7 KPILLPSASEDPSIDNWD---K---ASW--------ENVTPIVSEQGDGEIIEIIDPSLKLVR 55 (131)
Q Consensus 7 kp~vlv~NK~Dl~~~~~~---~---~~~--------~~~~~is~~~~~~~~~~~~~~~~~~~~ 55 (131)
+|+++|+||+|+.+.+.. . .++ ..++++||.++.| +.++++.+.+.+.
T Consensus 136 ~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g-i~~L~~~l~~~i~ 197 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEAN-IDVLLKAIQDFIP 197 (408)
T ss_dssp CCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------C-HHHHHHHHHHHSC
T ss_pred CeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCC-HHHHHHHHHHhCC
Confidence 589999999999764321 1 111 2468999999999 9999998877653
No 332
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.45 E-value=0.0014 Score=42.66 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|.+|+||||+.+.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 333
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.45 E-value=0.0019 Score=43.34 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...|++.|.+|+||||+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998763
No 334
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.45 E-value=0.0013 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
++|++.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998853
No 335
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.44 E-value=0.0014 Score=42.32 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|++.|.+|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 336
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.44 E-value=0.0016 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
....++++|.+|+|||||++++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 337
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.43 E-value=0.0014 Score=45.39 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~ 91 (131)
..++++|.+|+||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999887
No 338
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.42 E-value=0.00059 Score=49.65 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCcccccc---ccccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+... ....+ -.++++||+++.| +.++++.+.+.+
T Consensus 265 ~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g-i~el~~~l~~~l 325 (329)
T 3o47_A 265 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG-LYEGLDWLSNQL 325 (329)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBT-HHHHHHHHHHHH
T ss_pred CCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcC-HHHHHHHHHHHH
Confidence 3789999999999965421 11111 1267899999999 999998887765
No 339
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.42 E-value=0.0002 Score=46.58 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=36.1
Q ss_pred cCCCcEEeeccCCCccccc--ccc---cc-------cC---CCCccccccCCcccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDN--WDK---AS-------WE---NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~--~~~---~~-------~~---~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
..+.|+++|+||+|+.+.. ... .+ ++ .++++||+++.| +.++++.+.+.+
T Consensus 105 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 169 (178)
T 2lkc_A 105 AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG-LDHLLEMILLVS 169 (178)
T ss_dssp GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH-HHHHHHHHHHHH
T ss_pred hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC-HHHHHHHHHHhh
Confidence 3578999999999996531 111 11 11 467899999999 999988876654
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.41 E-value=0.0015 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
++|++.|.+|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998863
No 341
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.41 E-value=0.00036 Score=46.52 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=33.9
Q ss_pred CCCcEEeeccCCCcccc------cccc----ccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSID------NWDK----ASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~------~~~~----~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+. .... ..+ ...+++||+++.| +.++++.+.+.+
T Consensus 132 ~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g-v~el~~~l~~~i 195 (199)
T 2p5s_A 132 ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN-IVEAVLHLAREV 195 (199)
T ss_dssp --CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 37899999999999631 1111 111 3467899999999 999988776654
No 342
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.40 E-value=0.00029 Score=46.65 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=35.6
Q ss_pred CCCcEEeeccCCCccccccc----cccc-----CCCCcccc-ccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD----KASW-----ENVTPIVS-EQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~----~~~~-----~~~~~is~-~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+.+.... ...+ ...+.+|| +++.| +.++++.+.+.+
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g-v~~lf~~l~~~i 184 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH-VQHVFHEAVREA 184 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcccc-HHHHHHHHHHHH
Confidence 47899999999999653211 1122 45788999 89999 999988776543
No 343
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.39 E-value=0.00048 Score=44.81 Aligned_cols=49 Identities=8% Similarity=-0.007 Sum_probs=34.5
Q ss_pred CCCcEEeeccCCCccc--c-cc---ccccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSI--D-NW---DKASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~--~-~~---~~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+.. . .. ....+ ...+.+||+++.| +.++++.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~lf~~l~~~~ 167 (178)
T 2iwr_A 107 GGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN-VDRVFQEVAQKV 167 (178)
T ss_dssp CCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC-HHHHHHHHHHHH
Confidence 4789999999999842 1 11 11112 2467899999999 999988776544
No 344
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.39 E-value=0.0015 Score=42.58 Aligned_cols=21 Identities=24% Similarity=0.684 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999998875
No 345
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.38 E-value=0.0016 Score=41.98 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRY 90 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~ 90 (131)
-|++.|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 346
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.38 E-value=0.00022 Score=46.53 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=35.5
Q ss_pred CCcEEeeccCCCccccccc--------------cccc----C--CCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWD--------------KASW----E--NVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~--------------~~~~----~--~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|+||+|+.+.... ...+ + ..+++||+++.| +.++++.+.+.+
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN-VKGVFDAAIRVV 179 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 7899999999998653221 1112 2 568899999999 999988776654
No 347
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.37 E-value=0.00034 Score=49.72 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCCcEEeeccCCCcccccc---ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+..... ....+ ..++++||.++.| +.++++.+.+.+
T Consensus 106 ~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~g-i~el~~~i~~~~ 162 (272)
T 3b1v_A 106 TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTG-VDQVVKKAAHTT 162 (272)
T ss_dssp TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBS-HHHHHHHHHHSC
T ss_pred cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCC-HHHHHHHHHHHH
Confidence 4789999999999864321 11222 4678999999999 999999887765
No 348
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.36 E-value=0.00069 Score=44.76 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCcEEeeccCCCcccc--c-cc---cccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSID--N-WD---KASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~--~-~~---~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|.||+|+... . .. ...+ ...+.+||+++.| +.++++.+.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g-v~~lf~~l~~~i 178 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN-VERVFQDVAQKV 178 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 46899999999998421 1 11 1112 3467899999999 999988776654
No 349
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.36 E-value=0.0016 Score=43.48 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|.+|+||||+++.+.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999988753
No 350
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.35 E-value=0.00051 Score=45.90 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=34.3
Q ss_pred CCcEEeeccCCCccccccc-----------c-----ccc------CCCCccccccCCccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWD-----------K-----ASW------ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~-----------~-----~~~------~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
+.|+++|+||+|+.+.... . ..+ ...+++||+++.| +.++++.+.+.
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~i~~~ 197 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG-VREVFEMATRA 197 (201)
T ss_dssp TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHH
T ss_pred CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 7899999999999654210 0 011 2568899999999 99998876654
No 351
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.35 E-value=0.0018 Score=43.01 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999988764
No 352
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.34 E-value=0.00035 Score=47.28 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=36.2
Q ss_pred CCCcEEeeccCCCcccccc-------------c---cccc------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW-------------D---KASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~-------------~---~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.+.|+++|+||+|+..... . ...+ ...+++||+++.| +.++++.+.+.+
T Consensus 137 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~~ 207 (214)
T 2j1l_A 137 KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN-VHAVFQEAAEVA 207 (214)
T ss_dssp SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 3789999999999965421 0 0111 2578999999999 999998876654
No 353
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.31 E-value=0.0017 Score=42.93 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|.+|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998874
No 354
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.30 E-value=0.0021 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...+.++|.+|+|||||++.+.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999873
No 355
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.30 E-value=0.00036 Score=46.45 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=35.4
Q ss_pred CCcEEeeccCCCccccc-------------cc---cccc------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDN-------------WD---KASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~-------------~~---~~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+.|+++|+||+|+.... .. ...+ ...+++||+++.| +.++++.+.+.+
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 193 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN-LKEVFDAAIVAG 193 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 78999999999996521 00 1111 2578999999999 999998876654
No 356
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.30 E-value=0.0018 Score=42.24 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-|++.|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998774
No 357
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.30 E-value=0.00056 Score=45.92 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=35.8
Q ss_pred CCcEEeeccCCCccccccc-----------c-----ccc------CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWD-----------K-----ASW------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~-----------~-----~~~------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+...... . ..+ ..++++||+++.| +.++++.+.+.+
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~i 198 (207)
T 2fv8_A 129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG-VREVFETATRAA 198 (207)
T ss_dssp TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 7899999999999654210 0 011 1568899999999 999999887765
No 358
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.29 E-value=0.0019 Score=43.34 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..++++|.+|+||||+++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998764
No 359
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.29 E-value=0.0023 Score=42.59 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.....|+++|.+|+||||+...+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34567999999999999999988753
No 360
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.29 E-value=0.0021 Score=43.04 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|.+|+||||+...+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998763
No 361
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.28 E-value=0.0022 Score=42.12 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|++.|.+|+||||+...+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988763
No 362
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.27 E-value=0.00072 Score=51.58 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=36.8
Q ss_pred CCCcEEeeccCCCcccccc---ccccc---------CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW---DKASW---------ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~---~~~~~---------~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+..... ....+ ..++++||+++.| +.++++.+.+.+
T Consensus 422 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~~ 482 (497)
T 3lvq_E 422 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG-LYEGLTWLTSNY 482 (497)
T ss_dssp TTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBT-HHHHHHHHHHHC
T ss_pred CCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 4799999999999965321 11111 1378999999999 999999888776
No 363
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.26 E-value=0.0015 Score=42.91 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|++|+|||+|+..+++
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 364
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.26 E-value=0.002 Score=42.13 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|+.|+|||||++.+++.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999988764
No 365
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.26 E-value=0.0024 Score=42.68 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=20.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...+.|+++|.+|+||||+...+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999988763
No 366
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.24 E-value=0.0021 Score=41.78 Aligned_cols=21 Identities=43% Similarity=0.768 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+++.|++|+|||+++..+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988774
No 367
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.23 E-value=0.0021 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|+++|.+|+||||++..+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998764
No 368
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.22 E-value=0.0039 Score=43.20 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCCceeeEEEEEcCCCCCchhhhhhhh
Q psy10878 65 APPEKLFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 65 ~~~~~~~ki~vvG~~~vGKSsli~~~~ 91 (131)
+.......++++|.+||||||+++.++
T Consensus 9 ~~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 9 HHGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CTTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 345566789999999999999999987
No 369
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.22 E-value=0.0028 Score=41.61 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCchhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~ 91 (131)
...|+++|.+|+||||+...+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998876
No 370
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.21 E-value=0.0019 Score=44.83 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|+.|+|||||++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999998765
No 371
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.20 E-value=0.0022 Score=42.85 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999998765
No 372
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.19 E-value=0.0023 Score=42.49 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|.+|+|||||+++++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 373
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.16 E-value=0.0026 Score=42.73 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..+.++|.+|+|||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998764
No 374
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.14 E-value=0.0021 Score=43.16 Aligned_cols=21 Identities=33% Similarity=0.688 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|.+|+|||||++.+++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 488999999999999998775
No 375
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.14 E-value=0.0028 Score=41.67 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988763
No 376
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.14 E-value=0.0021 Score=44.04 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCchhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~ 91 (131)
-++++|.+|+||||+++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999887
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.14 E-value=0.0024 Score=43.25 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
++|++.|.+|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988764
No 378
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.13 E-value=0.0021 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999987753
No 379
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.13 E-value=0.0024 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.-++++|.+|+||||+++.+..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999987764
No 380
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.13 E-value=0.0026 Score=43.32 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
+.|+++|.||+||+|...+++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 381
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.13 E-value=0.0023 Score=43.35 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|++|+|||||++.+++
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 382
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.12 E-value=0.0027 Score=43.07 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..+.++|.+|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999997764
No 383
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.12 E-value=0.0029 Score=41.71 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|++.|.+|+||||+...+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988763
No 384
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.12 E-value=0.0012 Score=46.62 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=34.8
Q ss_pred cCCCcEEeeccCCCcccccccc-----c---c----cCCCCccccccCCcccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDNWDK-----A---S----WENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~~~-----~---~----~~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
..++|+++|+||+|+.+..... . . |..++++||+++.| +.++++.+.+
T Consensus 190 ~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~g-i~~l~~~l~~ 249 (299)
T 2aka_B 190 PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG-KKDITAALAA 249 (299)
T ss_dssp TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTS-CBCHHHHHHH
T ss_pred CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccc-cccHHHHHHH
Confidence 3578999999999996543211 1 1 23578899999999 9988877654
No 385
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.11 E-value=0.0025 Score=43.72 Aligned_cols=20 Identities=30% Similarity=0.727 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~ 91 (131)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48899999999999999877
No 386
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.09 E-value=0.0029 Score=41.60 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|+++|.+|+||||+...+..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998863
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.08 E-value=0.0031 Score=40.72 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+|++.|.+|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988764
No 388
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.06 E-value=0.003 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|..|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999988764
No 389
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.06 E-value=0.0011 Score=50.80 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCcEEeeccCCCcccccccc----cc--cCCCCccccccCCccccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWDK----AS--WENVTPIVSEQGDGEIIEIIDPSLKLVR 55 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~~----~~--~~~~~~is~~~~~~~~~~~~~~~~~~~~ 55 (131)
++|+++|+||+|+....... .. +..++++|++++.| +.++++.+.+.+.
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~G-I~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDG-IDTLKQHMGDLVK 397 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBS-HHHHHHHHTHHHH
T ss_pred CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCC-HHHHHHHHHHHHh
Confidence 68999999999996554221 11 25678999999999 9999998887763
No 390
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.06 E-value=0.0014 Score=50.69 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=32.2
Q ss_pred CCCcEEeeccCCCccccccc-cc---cc-----CCCCccccccCCcccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNWD-KA---SW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~~-~~---~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
.++|+++|+||+|+.+.... .. .+ ..++++||+++.| +.++++.+.+.+
T Consensus 149 ~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g-i~eL~~~l~~~~ 206 (535)
T 3dpu_A 149 GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG-VESIAKSLKSAV 206 (535)
T ss_dssp SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC------CTTHHHHHHHHH
T ss_pred CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccC-HHHHHHHHHHHH
Confidence 35899999999999654321 11 11 3489999999999 999999887765
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.05 E-value=0.0028 Score=44.20 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988753
No 392
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.03 E-value=0.0026 Score=44.86 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|+.|+|||||++.+++-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999987753
No 393
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.02 E-value=0.0029 Score=44.61 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|++|+||||+++.+++
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 599999999999999998774
No 394
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.02 E-value=0.0047 Score=41.23 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCchhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~ 91 (131)
...|++.|.+|+||||+...+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998876
No 395
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.01 E-value=0.0038 Score=41.31 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...|+++|.+|+||||+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988764
No 396
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.00 E-value=0.0032 Score=40.57 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|.+|+|||+|++.+.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998775
No 397
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.99 E-value=0.001 Score=48.85 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=36.6
Q ss_pred CCcEEeeccCCCccccccc--ccc----c-CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWD--KAS----W-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~--~~~----~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+...... ... . ..++++||.++.| +.++++.+.+.+
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g-i~~l~~~i~~~l 334 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG-IDLVKEEIIKTL 334 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT-HHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC-HHHHHHHHHHHH
Confidence 7999999999999754321 111 1 4578999999999 999998887665
No 398
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.97 E-value=0.0032 Score=43.73 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|+.|+|||||++.+++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998775
No 399
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.97 E-value=0.0011 Score=51.31 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=36.9
Q ss_pred CCccccccCCcccccccccccccccCCCcccCC--------CCCCceeeEEEEEcCC-CCCchhhhhhhh
Q psy10878 31 VTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSF--------NAPPEKLFKVIVIGDP-TVGKTSFVQRYV 91 (131)
Q Consensus 31 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ki~vvG~~-~vGKSsli~~~~ 91 (131)
+++.||.++.| +.++++.+.+.+..|..+... ..-....||+...=++ .+|+-+++.-+.
T Consensus 253 V~~gSA~~~~G-V~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~s 321 (528)
T 3tr5_A 253 IFFGSAINNFG-VGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIAS 321 (528)
T ss_dssp EEECBGGGTBS-HHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEE
T ss_pred EEeccccCCcc-HHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEec
Confidence 56779999999 999999998888444322110 0011224555543456 788877766443
No 400
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.96 E-value=0.0032 Score=44.00 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999987753
No 401
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.96 E-value=0.0029 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|+.|+|||||++.+++
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999998775
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.96 E-value=0.0054 Score=43.53 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCchhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~ 91 (131)
..+.|++.|.+|+||||+.+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998876
No 403
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.95 E-value=0.0033 Score=43.72 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|..|+|||||++.+++-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999987753
No 404
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.95 E-value=0.0034 Score=45.39 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|++|+|||||++.+++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 699999999999999998763
No 405
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.95 E-value=0.0021 Score=43.11 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=14.4
Q ss_pred CCCcEEeeccCCCcccc
Q psy10878 5 AKKPILLPSASEDPSID 21 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~ 21 (131)
.+.|+++|+||+|+...
T Consensus 114 ~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 114 NSPSLLIACNKQDIAMA 130 (214)
T ss_dssp TCCEEEEEEECTTSTTC
T ss_pred cCCCEEEEEECCCCCCc
Confidence 46899999999999654
No 406
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.94 E-value=0.0027 Score=49.91 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=39.2
Q ss_pred cCCCcEEeeccCCCcccccc--cccc----c----CCCCccccccCCcccccccccccccccC
Q psy10878 4 KAKKPILLPSASEDPSIDNW--DKAS----W----ENVTPIVSEQGDGEIIEIIDPSLKLVRV 56 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~~--~~~~----~----~~~~~is~~~~~~~~~~~~~~~~~~~~~ 56 (131)
..+.|+++|+||+|+..... ...+ + .+++++||+++.| +.++++.+.+.+..
T Consensus 123 ~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~G-I~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 123 EQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIG-IEEILEAIVNRIPP 184 (600)
T ss_dssp HTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCC-chHHHHHHHHhccc
Confidence 35789999999999965321 1111 1 3589999999999 99999999888743
No 407
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.94 E-value=0.0031 Score=43.22 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999987753
No 408
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.93 E-value=0.0042 Score=41.61 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
+.+.++|.+|+||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 409
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.93 E-value=0.003 Score=44.34 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988753
No 410
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.93 E-value=0.0027 Score=46.64 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.-+++++|.+|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998775
No 411
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.92 E-value=0.0038 Score=42.32 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
+.|+++|.+|+||||+...+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988763
No 412
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.91 E-value=0.0043 Score=41.42 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|++.|.+|+||||++..+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998764
No 413
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.91 E-value=0.012 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.9
Q ss_pred ceeeEEEEEcCCCCCchhhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~~ 91 (131)
++.-+|+++|-...|||||.-+++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL 34 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVL 34 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHH
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHH
Confidence 345589999999999999999887
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.91 E-value=0.0035 Score=42.77 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|+++|.+|+||||+.+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998763
No 415
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.91 E-value=0.0031 Score=44.57 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.+.++|+.|+|||||++.+++-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4889999999999999988753
No 416
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.90 E-value=0.00037 Score=49.10 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=35.9
Q ss_pred CcEEeeccCCCcccccc---ccccc-----CCCCccccccCCcccccccccccccc
Q psy10878 7 KPILLPSASEDPSIDNW---DKASW-----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 7 kp~vlv~NK~Dl~~~~~---~~~~~-----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
+|+++|+||+|+.+... ....+ ..++++|+..+.| +.++++.+...+
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~g-i~~l~~~i~~~~ 164 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEG-VEELKRMIALMA 164 (271)
T ss_dssp CSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBT-HHHHHHHHHHHH
T ss_pred CCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCC-HHHHHHHHHHHH
Confidence 89999999999854321 11222 5678999999999 999998887665
No 417
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.90 E-value=0.0044 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+.|++.|.+|+||||+..++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 418
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.89 E-value=0.0045 Score=40.71 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCchhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~ 91 (131)
..|++.|.+|+||||+...+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998775
No 419
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.89 E-value=0.0035 Score=43.84 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988763
No 420
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.88 E-value=0.0036 Score=44.24 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|..|+|||||++.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988764
No 421
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.88 E-value=0.0034 Score=44.38 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4889999999999999987753
No 422
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.87 E-value=0.006 Score=40.89 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...+.++|.+|+||||+++.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 423
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.87 E-value=0.0039 Score=43.05 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988753
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.86 E-value=0.0036 Score=40.93 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=15.0
Q ss_pred eEEEEEcCCCCCchhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~ 91 (131)
..|++.|.+|+||||+...+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999876
No 425
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.86 E-value=0.0055 Score=43.67 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..-+++.|.+|+||||+..++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.86 E-value=0.0042 Score=42.45 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|++.|.+|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998763
No 427
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.86 E-value=0.00079 Score=47.09 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCCcEEeeccCCCcccccc--ccccc------CCCCccccccCCccccccccccccc
Q psy10878 5 AKKPILLPSASEDPSIDNW--DKASW------ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 5 ~~kp~vlv~NK~Dl~~~~~--~~~~~------~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
.+.|+++|+||+|+.+... ....+ ...+.+||+++.| +.++++.+.+.
T Consensus 197 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g-v~elf~~l~~~ 252 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN-VDLAFSTLVQL 252 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS-HHHHHHHHHHH
T ss_pred CCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC-HHHHHHHHHHH
Confidence 4689999999999964321 11111 3467899999999 99988877654
No 428
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=95.86 E-value=0.0013 Score=50.50 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=35.9
Q ss_pred CCcEEeeccCCCcccccc--ccccc----CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNW--DKASW----ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~--~~~~~----~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+.+... ....+ ..++++|++++.| +.++++.+.+.+
T Consensus 350 ~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~G-i~eL~~~l~~~~ 403 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEG-LEKLEESIYRET 403 (482)
T ss_dssp TSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCC-HHHHHHHHHHHT
T ss_pred CCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 689999999999964311 11111 2578999999999 999998887754
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.86 E-value=0.0034 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|..|+|||||++.+++-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988753
No 430
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.85 E-value=0.0038 Score=43.22 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=18.6
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
++++|++|+|||+|++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998875
No 431
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.84 E-value=0.0036 Score=43.88 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4889999999999999987753
No 432
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=95.83 E-value=0.0014 Score=49.00 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=35.5
Q ss_pred CcEEeeccCCCcccccc---c---cccc--------CCCCccccccCCccccccccccccccc
Q psy10878 7 KPILLPSASEDPSIDNW---D---KASW--------ENVTPIVSEQGDGEIIEIIDPSLKLVR 55 (131)
Q Consensus 7 kp~vlv~NK~Dl~~~~~---~---~~~~--------~~~~~is~~~~~~~~~~~~~~~~~~~~ 55 (131)
+|+++|+||+|+.+.+. . ..++ ..++++|+.++.| +.++++.+.+.+.
T Consensus 138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g-i~~L~~~l~~~~~ 199 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGAN-IDVLVKAIEDFIP 199 (410)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBS-HHHHHHHHHHHSC
T ss_pred CcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCC-HHHHHHHHHHhCC
Confidence 58899999999975431 1 1111 3468999999999 9999998877653
No 433
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.83 E-value=0.0035 Score=44.40 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|..|+|||||++.+++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999987753
No 434
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.82 E-value=0.0032 Score=40.89 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+++.|++|+|||+++..+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 435
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.82 E-value=0.0046 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++|.+|+||||+++.++.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 436
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.82 E-value=0.004 Score=43.84 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|..|+|||||++.+++
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998875
No 437
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.81 E-value=0.0037 Score=40.81 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
+++++|.+|+||||+...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999987763
No 438
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.79 E-value=0.0042 Score=41.94 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998874
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.79 E-value=0.0043 Score=42.10 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+.|+++|.+|+||||+...+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988763
No 440
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.79 E-value=0.0039 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988753
No 441
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.78 E-value=0.005 Score=40.94 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|++.|.+|+||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 442
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.77 E-value=0.013 Score=44.62 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=38.4
Q ss_pred eeEEEEEcCCCCCchhhhhhhh---h---------------CcCCC---CccCCceeEeEEEE--EEecCCeEEEEEEEe
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYV---Q---------------NTFKK---DYKGTVGVDFALKI--VKWRDQQKIKLQLWD 126 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~---~---------------~~~~~---~~~~t~~~~~~~~~--~~~~~~~~~~l~i~D 126 (131)
..=|.|+|..++|||+|+|.++ . ..|.. ....|.|+..-... +...+|..+.+-+.|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 4457799999999999999543 1 23322 12245565432111 122367778899999
Q ss_pred CCCC
Q psy10878 127 IAGQ 130 (131)
Q Consensus 127 t~Gq 130 (131)
|.|.
T Consensus 147 TEG~ 150 (457)
T 4ido_A 147 TQGT 150 (457)
T ss_dssp ECCB
T ss_pred ccCC
Confidence 9984
No 443
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.77 E-value=0.0067 Score=39.98 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++|.+|+||||++..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45699999999999999987753
No 444
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.77 E-value=0.0044 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999987753
No 445
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.74 E-value=0.0045 Score=40.56 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|++.|.+|+||||+...+..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999998763
No 446
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.73 E-value=0.0045 Score=43.81 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
++++|++|+|||+|++.+++
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999998875
No 447
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.73 E-value=0.0019 Score=42.76 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+.++|.+|+|||||++.+++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998764
No 448
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.73 E-value=0.0046 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...-+.++|.+|+|||||++.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345799999999999999998764
No 449
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.71 E-value=0.0053 Score=40.36 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|++.|.+|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 450
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.71 E-value=0.0052 Score=41.56 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+++.|++|+|||+++..+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988764
No 451
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.70 E-value=0.0043 Score=43.53 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988753
No 452
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.68 E-value=0.0047 Score=44.54 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
-.++++|.+|+||||+++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998763
No 453
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.68 E-value=0.0044 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|..|+|||||++.+++-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4889999999999999987753
No 454
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.68 E-value=0.0026 Score=51.41 Aligned_cols=49 Identities=12% Similarity=-0.017 Sum_probs=37.2
Q ss_pred ccCCCcEEeeccCCCcccccccc------------cccCCCCccccccCCcccccccccccc
Q psy10878 3 YKAKKPILLPSASEDPSIDNWDK------------ASWENVTPIVSEQGDGEIIEIIDPSLK 52 (131)
Q Consensus 3 ~~~~kp~vlv~NK~Dl~~~~~~~------------~~~~~~~~is~~~~~~~~~~~~~~~~~ 52 (131)
...++|+++|+||+|+.+..... ..|..++++||.++.| +.++++.+.+
T Consensus 214 ~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~G-vdeL~eaI~~ 274 (772)
T 3zvr_A 214 DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG-KKDITAALAA 274 (772)
T ss_dssp CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSS-SEEHHHHHHH
T ss_pred HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccccccc-chhHHHHHHH
Confidence 34579999999999997543211 0135689999999999 9999887765
No 455
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.67 E-value=0.004 Score=42.30 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|+++|.+|+||||+...+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988763
No 456
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.66 E-value=0.0051 Score=43.00 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|.+|+|||||...++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998763
No 457
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.63 E-value=0.0058 Score=40.33 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 458
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.62 E-value=0.0052 Score=40.55 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|+++|.+|+||||+...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988763
No 459
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.61 E-value=0.0061 Score=46.32 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhhhC
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~~~ 93 (131)
..++|+++|.+|+||||+.+++...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998753
No 460
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.61 E-value=0.0074 Score=39.56 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|++.|.+|+||||+...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988763
No 461
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.0056 Score=43.25 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|+.|+|||||++.+++-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988754
No 462
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.60 E-value=0.006 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=19.8
Q ss_pred ceeeEEEEEcCCCCCchhhhhhh
Q psy10878 68 EKLFKVIVIGDPTVGKTSFVQRY 90 (131)
Q Consensus 68 ~~~~ki~vvG~~~vGKSsli~~~ 90 (131)
....|++++|.+++|||||+.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45689999999999999998753
No 463
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.59 E-value=0.0057 Score=40.94 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...|++.|.+|+||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998763
No 464
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.59 E-value=0.0064 Score=41.71 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...|+++|.+|+||||+...+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988763
No 465
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.58 E-value=0.0053 Score=44.51 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|++|+|||||++.+++
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 389999999999999998875
No 466
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.57 E-value=0.0057 Score=41.05 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|.+|+|||+|+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 467
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.57 E-value=0.0076 Score=46.44 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=35.6
Q ss_pred cCCCcEEeeccCCCccccc--cccc----------cc---CCCCccccccCCccccccccccccc
Q psy10878 4 KAKKPILLPSASEDPSIDN--WDKA----------SW---ENVTPIVSEQGDGEIIEIIDPSLKL 53 (131)
Q Consensus 4 ~~~kp~vlv~NK~Dl~~~~--~~~~----------~~---~~~~~is~~~~~~~~~~~~~~~~~~ 53 (131)
..+.|+++++||+|+.... .... .| ...+++||+++.| +.++++.+...
T Consensus 101 ~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g-I~eLle~I~~~ 164 (501)
T 1zo1_I 101 AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG-IDELLDAILLQ 164 (501)
T ss_dssp HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT-CTTHHHHTTTT
T ss_pred hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC-cchhhhhhhhh
Confidence 3578999999999996421 1111 11 1468899999999 99999987654
No 468
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.57 E-value=0.0035 Score=47.79 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=37.5
Q ss_pred CCcEEeeccCCCccccccc--cccc---CCCCccccccCCccccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWD--KASW---ENVTPIVSEQGDGEIIEIIDPSLKLVR 55 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~--~~~~---~~~~~is~~~~~~~~~~~~~~~~~~~~ 55 (131)
++|+++|+||+|+...... ...+ ..++++|++++.| +.++++.+.+.+.
T Consensus 330 ~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~G-i~eL~~~i~~~~~ 383 (462)
T 3geh_A 330 HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQG-IDSLETAILEIVQ 383 (462)
T ss_dssp TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBS-HHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCC-HHHHHHHHHHHHh
Confidence 4799999999999654321 1222 4578999999999 9999998877763
No 469
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.55 E-value=0.0074 Score=44.45 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCCCccCCc---------eeEeEEEEEEecCC----eEEEEEEEeCCCCC
Q psy10878 95 FKKDYKGTV---------GVDFALKIVKWRDQ----QKIKLQLWDIAGQN 131 (131)
Q Consensus 95 ~~~~~~~t~---------~~~~~~~~~~~~~~----~~~~l~i~Dt~Gqe 131 (131)
+...|.||. ........+.+ ++ ..+.++||||+|||
T Consensus 146 ~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~-~~~~~~~~v~l~iwDtaGQe 194 (354)
T 2xtz_A 146 SDINYIPTKEDVLYARVRTTGVVEIQFSP-VGENKKSGEVYRLFDVGGQR 194 (354)
T ss_dssp HSTTCCCCHHHHHHCCCCCCSEEEEEECC-CCE------EEEEEEECCST
T ss_pred hcCCCCCCchheeeecccccceeeEEEEe-ccCccccceeeEEEECCCch
No 470
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.55 E-value=0.0058 Score=42.98 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=18.6
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
++++|++|+|||+|++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999998875
No 471
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.54 E-value=0.0063 Score=40.23 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|++.|.+|+||||+...+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999987764
No 472
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.54 E-value=0.0061 Score=40.91 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988764
No 473
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.54 E-value=0.006 Score=43.94 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
--++++|..|+||||++..+++
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 474
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.54 E-value=0.0082 Score=42.96 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=19.8
Q ss_pred eeeEEEEEcCCCCCchhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~ 91 (131)
....|.++|.+|+|||||++.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999998765
No 475
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.50 E-value=0.0076 Score=41.68 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..+.++|..|+|||||++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998775
No 476
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.50 E-value=0.0063 Score=40.40 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=18.3
Q ss_pred EEEEcCCCCCchhhhhhhhh
Q psy10878 73 VIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 73 i~vvG~~~vGKSsli~~~~~ 92 (131)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999988764
No 477
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.50 E-value=0.0057 Score=43.40 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|.+|+|||||+..++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999988753
No 478
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.50 E-value=0.0055 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|++|+|||||++.+++-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4889999999999999988764
No 479
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.50 E-value=0.0063 Score=40.53 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999987764
No 480
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.50 E-value=0.0061 Score=44.44 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
.--++++|.+|+||||+++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999998774
No 481
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.50 E-value=0.0066 Score=39.26 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|++.|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988764
No 482
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.50 E-value=0.0065 Score=42.13 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.+++.|++|+|||+++..+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999999998774
No 483
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.48 E-value=0.0081 Score=40.27 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...+.++|.+|+||||+++.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999987763
No 484
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.48 E-value=0.0065 Score=41.41 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-++++|++|+|||+|+..++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999886
No 485
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.48 E-value=0.0014 Score=48.03 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCcEEeeccCCCccccccc------c-c----------cc-CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDNWD------K-A----------SW-ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~~~------~-~----------~~-~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|+++|+||+|+...... . . .| ..++++|+.++.| +.++++.+.+.+
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G-i~~L~~~i~~~~ 282 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRG-LAELWDTVERHR 282 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS-HHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCC-HHHHHHHHHHHH
Confidence 4699999999998643110 0 0 22 3578999999999 999999887765
No 486
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.48 E-value=0.0066 Score=42.27 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCchhhhhhhhh
Q psy10878 70 LFKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 70 ~~ki~vvG~~~vGKSsli~~~~~ 92 (131)
...++++|.+|+||||+...+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988763
No 487
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=95.47 E-value=0.0056 Score=46.23 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCCc-EEeeccCCCccccccc-------cc---cc-----------CCCCccccccCCcccccccc
Q psy10878 5 AKKP-ILLPSASEDPSIDNWD-------KA---SW-----------ENVTPIVSEQGDGEIIEIID 48 (131)
Q Consensus 5 ~~kp-~vlv~NK~Dl~~~~~~-------~~---~~-----------~~~~~is~~~~~~~~~~~~~ 48 (131)
.+.| +++|+||+|+...++. .. .+ ..++++||.+|.| +.++.+
T Consensus 153 ~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~n-i~~l~~ 217 (439)
T 3j2k_7 153 AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGAN-LKEQSD 217 (439)
T ss_pred cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcc-cccccc
Confidence 4566 8999999999542110 01 11 1368999999999 888655
No 488
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.46 E-value=0.0063 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.++++|.+|+||||+++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998764
No 489
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.45 E-value=0.0078 Score=42.09 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..|++.|.+|+||||+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999988764
No 490
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.43 E-value=0.0063 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|++|+|||||++.+++-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4889999999999999988754
No 491
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.43 E-value=0.0064 Score=43.58 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
.++++|..|+|||||++.+++-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999987753
No 492
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.41 E-value=0.0075 Score=39.91 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
-+.++|.+|+|||||+.+++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998774
No 493
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.40 E-value=0.0088 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.7
Q ss_pred eeeEEEEEcCCCCCchhhhhhhh
Q psy10878 69 KLFKVIVIGDPTVGKTSFVQRYV 91 (131)
Q Consensus 69 ~~~ki~vvG~~~vGKSsli~~~~ 91 (131)
....|+++|.+||||||++++++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999988
No 494
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.40 E-value=0.0068 Score=45.17 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4889999999999999988753
No 495
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.39 E-value=0.0071 Score=39.68 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCchhhhhhhhh
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~ 92 (131)
.|+++|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987764
No 496
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.39 E-value=0.0067 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|++|+|||||++.+++-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4889999999999999988753
No 497
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.39 E-value=0.0069 Score=44.80 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|++|+|||||++.+++-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4889999999999999988753
No 498
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.39 E-value=0.001 Score=45.15 Aligned_cols=48 Identities=17% Similarity=0.042 Sum_probs=33.5
Q ss_pred CCcEEeeccCCCccccc-cccc-------cc---CCCCccccccCCcccccccccccccc
Q psy10878 6 KKPILLPSASEDPSIDN-WDKA-------SW---ENVTPIVSEQGDGEIIEIIDPSLKLV 54 (131)
Q Consensus 6 ~kp~vlv~NK~Dl~~~~-~~~~-------~~---~~~~~is~~~~~~~~~~~~~~~~~~~ 54 (131)
++|.++|+||+|+.+.. .... .+ ..++++|++++.| +.++++.+.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEG-FDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCC-HHHHHHHHHHHH
Confidence 35669999999986531 1111 11 3568899999999 999988776543
No 499
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.36 E-value=0.0096 Score=38.95 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhhhhhhhh
Q psy10878 71 FKVIVIGDPTVGKTSFVQRYVQ 92 (131)
Q Consensus 71 ~ki~vvG~~~vGKSsli~~~~~ 92 (131)
..++++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 500
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.34 E-value=0.0071 Score=44.87 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhhhhhhhhC
Q psy10878 72 KVIVIGDPTVGKTSFVQRYVQN 93 (131)
Q Consensus 72 ki~vvG~~~vGKSsli~~~~~~ 93 (131)
-++++|++|+|||||++.+++-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4889999999999999988754
Done!