RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10878
(131 letters)
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 76.4 bits (187), Expect = 4e-19
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFK+++IG+ VGKT V+R+ Q F T+GVDF +K V+ + +K+KLQ+WD AG
Sbjct: 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAG 63
Query: 130 Q 130
Q
Sbjct: 64 Q 64
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 76.0 bits (186), Expect = 4e-19
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+ K+++IGD VGK+ + R+V++ F + T+G+DF +K V +K+KLQ+WD AG
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING-KKVKLQIWDTAG 60
Query: 130 Q 130
Q
Sbjct: 61 Q 61
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 75.2 bits (184), Expect = 9e-19
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFK+++IGD VGKT + R+ ++ F + T+G+DF ++ ++ D ++IKLQ+WD AG
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAG 64
Query: 130 Q 130
Q
Sbjct: 65 Q 65
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 72.6 bits (177), Expect = 2e-17
Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFK+++IG+ VGK+ + R+ +T+ DY T+GVDF +K V+ + +KLQ+WD AG
Sbjct: 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-GKTVKLQIWDTAG 64
Query: 130 Q 130
Q
Sbjct: 65 Q 65
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 69.9 bits (170), Expect = 1e-16
Identities = 29/61 (47%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK+++IG+ +VGKTSF+ RY ++F + TVG+DF +K + +R+ ++IKLQ+WD AG
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAG 63
Query: 130 Q 130
Q
Sbjct: 64 Q 64
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 68.4 bits (166), Expect = 6e-16
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ---------KI 120
L K++ +GD VGKT+F+ RY N F + TVG+DF K V + Q K+
Sbjct: 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64
Query: 121 KLQLWDIAGQ 130
LQLWD AGQ
Sbjct: 65 HLQLWDTAGQ 74
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 66.9 bits (162), Expect = 2e-15
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFK +VIG+ GK+ + ++++ FK D T+GV+F KI+ + +KLQ+WD AG
Sbjct: 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAG 63
Query: 130 Q 130
Q
Sbjct: 64 Q 64
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 66.0 bits (160), Expect = 3e-15
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
K+++IG+ VGK+S + R+ +TF + T+GVDF +K + D K KL +WD AGQ
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQ 66
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 64.7 bits (156), Expect = 1e-14
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+ KVI++GD VGKTS + RYV + + + YK T+G DF K V + +Q+WD AG
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 130 Q 130
Q
Sbjct: 62 Q 62
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 64.1 bits (155), Expect = 2e-14
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKD-YKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
FKV+++GD VGKT + R+ F + TVG+DF K++ K+KLQ+WD A
Sbjct: 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG-VKVKLQMWDTA 64
Query: 129 GQ 130
GQ
Sbjct: 65 GQ 66
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 61.5 bits (148), Expect = 2e-13
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
LFKVI++GD VGK+S + RYV N F T+GV+F K ++ + +Q+WD
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF-VTMQIWDT 62
Query: 128 AGQN 131
AGQ
Sbjct: 63 AGQE 66
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 60.7 bits (146), Expect = 3e-13
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
+FK I+IGD VGK+ + ++ + F D T+GV+F +I++ QKIKLQ+WD AG
Sbjct: 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAG 62
Query: 130 Q 130
Q
Sbjct: 63 Q 63
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 60.5 bits (145), Expect = 6e-13
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
L KVI++GD VGKTS + +YV F YK T+G DF K V D+ + +Q+WD AG
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWDTAG 60
Query: 130 QN 131
Q
Sbjct: 61 QE 62
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 59.9 bits (144), Expect = 7e-13
Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFKV++IGD VGK++ + R+ +N F + K T+GV+FA + ++ D + IK Q+WD AG
Sbjct: 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAG 62
Query: 130 Q 130
Q
Sbjct: 63 Q 63
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 58.9 bits (141), Expect = 1e-12
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
++FK+IVIGD VGKT R+ F + T+GVDF + D ++IK+QLWD A
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFR-ERAVDIDGERIKIQLWDTA 59
Query: 129 GQ 130
GQ
Sbjct: 60 GQ 61
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 58.4 bits (140), Expect = 2e-12
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
FK++ +G+ +VGKTS + R++ ++F Y+ T+G+DF + + + I+LQLWD AGQ
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL-SKTMYLEDRTIRLQLWDTAGQ 59
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 58.8 bits (141), Expect = 2e-12
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ 118
+ P + K +V+GD VGKT + Y + F ++Y TV D V +Q
Sbjct: 3 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 56
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 58.0 bits (139), Expect = 3e-12
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
LFK I+IGD VGK+ + ++ F+ + T+GV+F + D ++IKLQ+WD AG
Sbjct: 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG-ARMVNIDGKQIKLQIWDTAG 61
Query: 130 QN 131
Q
Sbjct: 62 QE 63
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 57.4 bits (137), Expect = 7e-12
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 66 PPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
PP + K++V+G VGK++ +++Q+ F DY D KI L
Sbjct: 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILD 60
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 56.5 bits (135), Expect = 1e-11
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
FKV+++G+ VGKTS V RY +N F + T+G F K + ++ + L +WD AG
Sbjct: 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKR-VNLAIWDTAG 61
Query: 130 QN 131
Q
Sbjct: 62 QE 63
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 55.8 bits (133), Expect = 3e-11
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
K++++GD GKT + ++ F + Y TV ++ D ++++L LWD AG
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY--VADIEVDGKQVELALWDTAGL 60
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 55.0 bits (131), Expect = 5e-11
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
+K++V+G VGK++ + +QN F +Y T+ + ++V + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID--GETCLLDILDTAGQ 61
Query: 131 N 131
Sbjct: 62 E 62
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 55.0 bits (131), Expect = 5e-11
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWD 126
+ K +V+GD VGKT + Y N F +Y TV ++A+ ++ + + L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 59
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 54.6 bits (130), Expect = 6e-11
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
FK++++G+ VGK+S V R+V+ F + + T+G F D +K ++WD AGQ
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL-TQTVCLDDTTVKFEIWDTAGQ 65
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 54.6 bits (130), Expect = 7e-11
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
+ +K++V+G VGK++ ++VQ F + Y T+ + ++ Q+ L++ D A
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD--CQQCMLEILDTA 59
Query: 129 GQN 131
G
Sbjct: 60 GTE 62
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 54.5 bits (130), Expect = 8e-11
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
+ +KV+V+G VGK++ ++V TF + Y T+ + + D L++ D A
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY--RKEIEVDSSPSVLEILDTA 59
Query: 129 GQN 131
G
Sbjct: 60 GTE 62
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 54.2 bits (129), Expect = 1e-10
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
++V V G VGK+S V R+V+ TF++ Y TV + I + +++
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDT 57
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 53.9 bits (128), Expect = 1e-10
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
K+ + G VGK++ V R++ F +Y T+ + + D + + +++
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY--RHQATIDDEVVSMEIL 55
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 53.0 bits (126), Expect = 3e-10
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDF 107
L KVI++G VGK++ +++ + F +DY+ T +
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 52.3 bits (124), Expect = 5e-10
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ 118
FK++++GD GKT+FV+R++ F+K Y T+GV+ +
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 51
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 52.3 bits (124), Expect = 6e-10
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ K +V+GD VGKT + Y N F +Y TV ++ D + + L LWD
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY--SANVMVDGKPVNLGLWDT 60
Query: 128 AGQ 130
AGQ
Sbjct: 61 AGQ 63
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 51.9 bits (123), Expect = 7e-10
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
+ KV ++GD VGK+S + R+V+++F + T+G F K V+++++ +WD A
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKF-LIWDTA 61
Query: 129 GQ 130
G
Sbjct: 62 GL 63
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 51.3 bits (121), Expect = 1e-09
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
K K+ ++G +VGK+S ++V+ F Y T+ F I + Q+ LQL D A
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI--TVNGQEYHLQLVDTA 60
Query: 129 GQ 130
GQ
Sbjct: 61 GQ 62
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 51.2 bits (121), Expect = 1e-09
Identities = 11/55 (20%), Positives = 28/55 (50%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
++++V+G VGK++ +++Q+ F DY T+ + + V ++ +
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 51.2 bits (121), Expect = 1e-09
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
+K++V+GD VGK++ ++ Q F DY T+ + D Q L + D AGQ
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY--LKHTEIDNQWAILDVLDTAGQ 62
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 50.1 bits (118), Expect = 3e-09
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
++V++IG+ VGK++ + D V + + D + + L
Sbjct: 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 50.0 bits (118), Expect = 3e-09
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDF 107
K++V+GD GKT+ + + ++ F ++Y TV ++
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 39
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 50.1 bits (118), Expect = 4e-09
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
K++++G+ VGK+S V R+V N F ++ + T+G F ++ +K ++WD AGQ
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL-TQRVTINEHTVKFEIWDTAGQ 62
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 49.3 bits (116), Expect = 6e-09
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131
K++V+G+ VGK+S +QRY + F KDYK T+GVDF + ++ D+ ++L LWD AGQ
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED-VRLMLWDTAGQE 62
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 49.6 bits (117), Expect = 8e-09
Identities = 7/59 (11%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+ K++++G GK++F+++ T G+ ++ + + +
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRS 57
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 49.4 bits (117), Expect = 1e-08
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
+++++G GK++ V++ T G+ K+ ++D+
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIF-----ETKFQVDKVNFHMFDV 54
Query: 128 AGQN 131
GQ
Sbjct: 55 GGQR 58
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 47.3 bits (111), Expect = 4e-08
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
++ V+GD GK+S + R++ +++ K K D Q + + + A
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE---SEQYKKEMLVDGQTHLVLIREEA 60
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 46.6 bits (109), Expect = 6e-08
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQ 130
+++++G GKT+ + + T + + I +WD+ GQ
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVE-YKNISFTVWDVGGQ 54
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 45.1 bits (105), Expect = 2e-07
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
+KV+++G P VGK++ + + + + +V + + +W
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 56
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 45.4 bits (106), Expect = 2e-07
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
K +++++G GKT+ + R K T+G + + + +KL +WD+
Sbjct: 15 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV-----ETLSYKNLKLNVWDL 68
Query: 128 A 128
Sbjct: 69 G 69
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 44.9 bits (105), Expect = 2e-07
Identities = 7/45 (15%), Positives = 20/45 (44%)
Query: 58 SIRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGT 102
SI + + P++ +++++G GKT+ +++
Sbjct: 4 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ 48
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 44.9 bits (105), Expect = 4e-07
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
+L K++++G GK++F+++ T G+ + + + ++ D+
Sbjct: 1 RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIH-----EYDFEIKNVPFKMVDVG 52
Query: 129 GQN 131
GQ
Sbjct: 53 GQR 55
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 43.1 bits (100), Expect = 1e-06
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ 118
++ ++G GKT+FV F +D TVG + +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 50
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 43.5 bits (101), Expect = 1e-06
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLW 125
V+ +G GKT R + ++ ++ A+ V + L
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDL 54
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 42.2 bits (98), Expect = 2e-06
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
K +++++G GKT+ + + V+ + +K +WD+
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG------FNVETVTYKNVKFNVWDVG 64
Query: 129 GQ 130
GQ
Sbjct: 65 GQ 66
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 41.2 bits (95), Expect = 7e-06
Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 72 KVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDI 127
K++ +G GKT+ + + T+ + +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLG 52
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 40.8 bits (94), Expect = 1e-05
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
+ KVI++G GKT+ + ++ N V+ + +WDI
Sbjct: 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS------PTIGSNVEEIVINNTRFLMWDIG 67
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 40.4 bits (93), Expect = 1e-05
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIA 128
+ +++++G GKT+ ++++ T+ +K + + KL +WD+
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLG-FNIKTLEHRGFKLNIWDVG 54
Query: 129 GQ 130
GQ
Sbjct: 55 GQ 56
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 40.5 bits (93), Expect = 1e-05
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTF 95
+ +++++G GKT+ + R
Sbjct: 4 REMRILILGLDGAGKTTILYRLQVGEV 30
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 39.7 bits (91), Expect = 3e-05
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 68 EKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDY 99
+K K++ +G GKT+ + + +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV 42
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 38.0 bits (87), Expect = 9e-05
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQ 117
+ K++++G GK++ V++ F K D
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDV 49
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 34.2 bits (77), Expect = 0.002
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQ 118
+I+ G GKTS + ++ + TV L +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSG 47
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 33.6 bits (75), Expect = 0.003
Identities = 9/59 (15%), Positives = 20/59 (33%)
Query: 64 NAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKL 122
+ P + +V G GK+S + T G + + + D +++
Sbjct: 10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 68
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 33.2 bits (74), Expect = 0.004
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 71 FKVIVIGDPTVGKTSFVQRYVQ 92
KV++ G P GK+S +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAG 23
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 30.5 bits (68), Expect = 0.047
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 42 EIIEIIDPSLKLVRVP----SIRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKK 97
EI+ +I+ ++ + +I + + V V G+ GK+SF+ ++
Sbjct: 24 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE 83
Query: 98 DYKGTVGVDFA-LKIVKWRDQQKIKLQLWDIAG 129
+ GV ++ ++ + WD+ G
Sbjct: 84 EGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 29.7 bits (65), Expect = 0.066
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 56 VPSIRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRY 90
V S K P L ++ + G VGK+SF+
Sbjct: 9 VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSL 43
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 29.3 bits (64), Expect = 0.12
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 71 FKVIVIGDPTVGKTSFVQR 89
KV ++G P VGK++
Sbjct: 9 IKVAIVGRPNVGKSTLFNA 27
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas
europaea [TaxId: 915]}
Length = 165
Score = 28.6 bits (63), Expect = 0.13
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 47 IDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75
ID L L+ +++ P +++ +
Sbjct: 1 IDAELDLM----LKRELAVPVNLVWRGLT 25
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.4 bits (62), Expect = 0.20
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFA 108
V+ +G GKT+ + + V +D
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 38
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.2 bits (61), Expect = 0.24
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 68 EKLF--KVIVIGDPTVGKTSFVQRYVQ 92
EK + V ++G P VGK++ + +
Sbjct: 1 EKTYSGFVAIVGKPNVGKSTLLNNLLG 27
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 27.6 bits (60), Expect = 0.34
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 72 KVIVIGDPTVGKTSFVQR 89
+++++G P VGK++ + R
Sbjct: 2 RMVIVGKPNVGKSTLLNR 19
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 27.7 bits (60), Expect = 0.40
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYK 100
++V +GK++FV++ K
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTAMGK 65
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.4 bits (59), Expect = 0.50
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 73 VIVIGDPTVGKTSFVQRYVQ 92
V+++G P VGK++ + V+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 27.3 bits (60), Expect = 0.55
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKD 98
++IG+P VGKT+ V+ Q K D
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGD 71
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.9 bits (58), Expect = 0.70
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYK 100
+V G GKT F +++ N + +
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYNGIIEFDE 56
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 26.6 bits (57), Expect = 0.83
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFK-KDYKGT 102
+I G VGK++ + R + G
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV 33
>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein
CalC {Micromonospora echinospora [TaxId: 1877]}
Length = 155
Score = 26.3 bits (57), Expect = 0.85
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 57 PSIRKS--FNAPPEKLFKVIV 75
P +R S A + FK +
Sbjct: 4 PFVRHSVTVKADRKTAFKTFL 24
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.7 bits (57), Expect = 0.98
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 40 DGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDY 99
+ ++ ++ + P + ++G P GKT +++ + K
Sbjct: 22 EQQLQQLDI---------LLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72
Query: 100 KGTVGVDFALKIVKWRDQQK 119
V ++ + +
Sbjct: 73 ARFVYINGFIYRNFTAIIGE 92
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.1 bits (56), Expect = 1.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDY 99
++ G GKT V R+V+N
Sbjct: 29 ILATGATGTGKTLLVSRFVENACANKE 55
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500
{Methanosarcina mazei [TaxId: 2209]}
Length = 163
Score = 26.0 bits (56), Expect = 1.4
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 14/46 (30%)
Query: 30 NVTPIVSEQGDGEIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIV 75
N T I +E G EII I + F+AP E +FK
Sbjct: 1 NPTRITAEPGKQEII--------------ITREFDAPRELVFKAFT 32
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 25.8 bits (55), Expect = 1.4
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAG 129
V ++G P GK+S + + + + ++ + L DI G
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRA--HPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 26.1 bits (57), Expect = 1.5
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGT 102
+++G+ VGKT+ + + D
Sbjct: 42 PLLVGESGVGKTAIAEGLAWRIVQGDVPEV 71
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 25.6 bits (55), Expect = 1.6
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 67 PEKLFKVIVIGDPTVGKTSFVQRYVQ 92
+L + ++G P GK + R +
Sbjct: 3 SARLLRAAIMGAPGSGKGTVSSRITK 28
>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus
halodurans [TaxId: 86665]}
Length = 138
Score = 25.6 bits (55), Expect = 1.8
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 55 RVPSIRKS--FNAPPEKLFKVIV 75
R+P I+K FNAP EK+++ +
Sbjct: 3 RLPDIKKEVRFNAPIEKVWEAVS 25
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 25.7 bits (55), Expect = 1.8
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYK 100
+ GKT+ +++ + + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIR 32
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 25.4 bits (54), Expect = 2.3
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 73 VIVIGDPTVGKTSFVQRYV-QNTFKKDYKGTVGVDFALKIVKWRDQQKI 120
+ ++G P VGK++ + + + Q K + I Q I
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAI 56
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 25.4 bits (54), Expect = 2.6
Identities = 7/59 (11%), Positives = 16/59 (27%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVGVDFALKIVKWRDQQKIKLQLWDIAGQN 131
V G+ GKT +G + + + + ++ G +
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD 97
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus
cereus [TaxId: 1396]}
Length = 143
Score = 25.1 bits (54), Expect = 2.7
Identities = 6/22 (27%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 56 VPSIRKS--FNAPPEKLFKVIV 75
+ I+++ FNA +K++ V+
Sbjct: 7 LNDIKQTIVFNASIQKVWSVVS 28
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 24.9 bits (53), Expect = 3.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 73 VIVIGDPTVGKTSFVQR 89
V+V GD GK++ V+
Sbjct: 31 VLVFGDRGTGKSTAVRA 47
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.1 bits (53), Expect = 3.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 73 VIVIGDPTVGKTSFVQRYVQN 93
+V+G GK+S ++ +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINE 52
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 24.9 bits (53), Expect = 3.8
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKK-------DYKGTVGVDFALKIVKWRDQQKIKLQLW 125
++V G GK+ ++ + D G + F + + + W
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTKGW 112
Query: 126 DI 127
Sbjct: 113 SF 114
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 24.7 bits (53), Expect = 4.0
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQN 93
+ + G VGK+S +
Sbjct: 96 QDKTTVFAGQSGVGKSSLLNAISPE 120
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 24.7 bits (52), Expect = 4.2
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTV 103
G GKT + + N ++
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYD 67
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 24.7 bits (52), Expect = 4.3
Identities = 6/32 (18%), Positives = 7/32 (21%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVG 104
G+ GKT G G
Sbjct: 40 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPG 71
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 24.6 bits (53), Expect = 5.1
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 24/85 (28%)
Query: 24 DKASWENVTPI------VSEQGDGEIIE----IIDPSLKLVRVPSIRKSFNAPPEKLFKV 73
+K +EN+TP+ E+G+G + ++D + + R +
Sbjct: 1 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ--------------RG 46
Query: 74 IVIGDPTVGKTSFVQRYVQNTFKKD 98
+++ P GKT +Q Q+
Sbjct: 47 LIVAPPKAGKTMLLQNIAQSIAYNH 71
>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock
protein ATPase homolog 1, AHSA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 132
Score = 23.8 bits (51), Expect = 5.8
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 58 SIRKSFNAPPEKLFKVIV 75
+++++F PE+L++V
Sbjct: 7 TLKETFLTSPEELYRVFT 24
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 24.4 bits (52), Expect = 6.1
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 69 KLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYK 100
++ V G P GK++F++ + ++ K
Sbjct: 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLK 84
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 24.4 bits (51), Expect = 6.2
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGTVG 104
+ G+ GKT +G
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 57
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439
{Chromobacterium violaceum [TaxId: 536]}
Length = 143
Score = 23.6 bits (50), Expect = 7.4
Identities = 4/16 (25%), Positives = 11/16 (68%)
Query: 59 IRKSFNAPPEKLFKVI 74
+ + +APPE++++
Sbjct: 6 LHRVLSAPPERVYRAF 21
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 23.9 bits (51), Expect = 7.6
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYKGT 102
V + GD GKT+ + +Q + +
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKS 65
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 23.8 bits (50), Expect = 8.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 73 VIVIGDPTVGKTSFVQRYVQNTFKKDYK 100
V + G P VGKT+ + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVP 31
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 23.7 bits (50), Expect = 9.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 70 LFKVIVIGDPTVGKTSFVQRYVQNTF 95
L ++ V+G + GK+S ++ +V F
Sbjct: 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 23.7 bits (50), Expect = 9.9
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 42 EIIEIIDPSLKLVRVPSIRKSFNAPPEKLFKVIVIGDPTVGKTSFVQRYVQNTFKKDYK 100
+ ++D LV+ + S P V++ G P GKT+ + + + K
Sbjct: 17 PVTRVLDDGELLVQ--QTKNSDRTPL---VSVLLEGPPHSGKTALAAKIAEESNFPFIK 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.403
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,417
Number of extensions: 24757
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 108
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.9 bits)