BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10879
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 37 KNIRDTWIKNIEKYQVKYLF------SIGNKENVVDVKLK 70
+ I D +KN+EK VK LF S+G KE D+KLK
Sbjct: 158 RKITDDLVKNVEKLGVKALFVTVDAPSLGQKEK--DMKLK 195
>pdb|1W36|C Chain C, Recbcd:dna Complex
pdb|1W36|F Chain F, Recbcd:dna Complex
pdb|3K70|C Chain C, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|F Chain F, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 1122
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 166 DRYLPYALGGGYV-LSH-LLVKFISENSHMLSSYISEDV----SVGVWLSALDIT 214
DRYLPYA+ SH +L FIS S S ++SEDV V V + DIT
Sbjct: 432 DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 37 KNIRDTWIKNIEKYQVKYLF------SIGNKENVVDVKLK 70
+ I D +KN+EK VK LF S+G +E D+KLK
Sbjct: 160 RKITDDLVKNVEKLGVKALFVTVDAPSLGQREK--DMKLK 197
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 37 KNIRDTWIKNIEKYQVKYLF------SIGNKENVVDVKLK 70
+ I D +KN+EK VK LF S+G +E D+KLK
Sbjct: 259 RKITDDLVKNVEKLGVKALFVTVDAPSLGQREK--DMKLK 296
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 37 KNIRDTWIKNIEKYQVKYLF------SIGNKENVVDVKLK 70
+ I D +KN+EK VK LF S+G +E D+KLK
Sbjct: 259 RKITDDLVKNVEKLGVKALFVTVDAPSLGQREK--DMKLK 296
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 37 KNIRDTWIKNIEKYQVKYLF------SIGNKENVVDVKLK 70
+ I D +KN+EK VK LF S+G +E D+KLK
Sbjct: 259 RKITDDLVKNVEKLGVKALFVTVDAPSLGQREK--DMKLK 296
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 37 KNIRDTWIKNIEKYQVKYLF------SIGNKENVVDVKLK 70
+ I D +KN+EK VK LF S+G +E D+KLK
Sbjct: 254 RKITDDLVKNVEKLGVKALFVTVDAPSLGQREK--DMKLK 291
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 37 KNIRDTWIKNIEKYQVKYLF------SIGNKENVVDVKLK 70
+ I D +KN+EK VK LF S+G +E D+KLK
Sbjct: 259 RKITDDLVKNVEKLGVKALFVTVDAPSLGQREK--DMKLK 296
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 37 KNIRDTWIKNIEKYQVKYLF------SIGNKENVVDVKLK 70
+ I D +KN+EK VK LF S+G +E D+KLK
Sbjct: 259 RKITDDLVKNVEKLGVKALFVTVDAPSLGQREK--DMKLK 296
>pdb|2LMR|A Chain A, Solution Structure Of The First Sam Domain Of Odin
Length = 101
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 186 FISENSHMLSSYISEDVSVGVWLSALDITRY 216
+ SHM+S + + SVG WL ++ + +Y
Sbjct: 14 LVPRGSHMISGLRTLEQSVGEWLESIGLQQY 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,561,154
Number of Sequences: 62578
Number of extensions: 323431
Number of successful extensions: 640
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 26
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)