RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10879
(245 letters)
>gnl|CDD|216686 pfam01762, Galactosyl_T, Galactosyltransferase. This family
includes the galactosyltransferases
UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-
galactosyltransferase and UDP-Gal:beta-GlcNAc beta
1,3-galactosyltranferase. Specific
galactosyltransferases transfer galactose to GlcNAc
terminal chains in the synthesis of the lacto-series
oligosaccharides types 1 and 2.
Length = 196
Score = 102 bits (255), Expect = 8e-27
Identities = 56/200 (28%), Positives = 84/200 (42%), Gaps = 22/200 (11%)
Query: 35 RRKNIRDTW--IKNIEKYQVKYLFSIGNKENVVDVKLK----EEIRRYDDILLLNQVPDE 88
RR IR TW N E ++K LF +G + D K+K EE + Y DI++++ D
Sbjct: 2 RRNAIRKTWMNKGNSEGGRIKSLFLVGLSADT-DGKVKDLVMEEAKLYGDIVVVDFE-DT 59
Query: 89 YSSLSQKVLHSFKYIYEHFD-FQYLLKCDDDTFVRVPNIIHELENKF--HYEKKLYWGFF 145
Y +L+ K L Y +Y+ K DDD + ++ L+ E Y
Sbjct: 60 YENLTFKTLTGLLYAVSKAPSAKYIGKIDDDVYFFPDKLLSLLDRGNINPSESSFYGYVM 119
Query: 146 DGRARVRRAGKWKEKNWFL------CDRYLPYALGGGYVLSHLLVKFISENSHMLSSYIS 199
+R K+ W++ C RY PYA G Y+LS + + + S
Sbjct: 120 KEGPVIRN----KKSKWYVPPSDYPCSRYPPYASGPFYLLSRDAAELLLKASKHRRFLQI 175
Query: 200 EDVSV-GVWLSALDITRYHD 218
EDV V G+ L I+R
Sbjct: 176 EDVYVTGILADDLGISRVDL 195
>gnl|CDD|215596 PLN03133, PLN03133, beta-1,3-galactosyltransferase; Provisional.
Length = 636
Score = 78.3 bits (193), Expect = 1e-16
Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 25/241 (10%)
Query: 16 LKHSYFIVILILTSSKNYIRRKNIRDTWIK--NIEKYQVKYLFSIG-NKENVVDVKLKEE 72
K + I + +++ N+ RR +R TW++ + V F +G +K +V+ +L E
Sbjct: 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNE 440
Query: 73 IRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELEN 132
R Y DI L+ V D YS ++ K L + E +Y++K DDD FVRV ++ L
Sbjct: 441 ARTYGDIQLMPFV-DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASL-K 498
Query: 133 KFHYEKKLYWGFFDGRARVRRAGKWKEKNWFLC------DRYLPYALGGGYVLSHLLVKF 186
+ + L +G + ++ R + W++ + Y P+A G GYV+S + K
Sbjct: 499 RTNVSHGLLYGLINSDSQPHRN---PDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKE 555
Query: 187 ISENSHM--LSSYISEDVSVGVWLS-----ALDITRYHDVRFDTEFQSRGCNNSYLIVHK 239
+ + L + EDV++G+W++ L++ +D R E GC + Y++ H
Sbjct: 556 VYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE----GCKDGYVVAHY 611
Query: 240 Q 240
Q
Sbjct: 612 Q 612
>gnl|CDD|178735 PLN03193, PLN03193, beta-1,3-galactosyltransferase; Provisional.
Length = 408
Score = 74.2 bits (182), Expect = 2e-15
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 25/237 (10%)
Query: 17 KHSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQ-------VKYLFSIGNKEN---VVD 66
K Y +V+ I T+ + RR ++R TW+ EK + + F IG+ ++D
Sbjct: 136 KRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILD 195
Query: 67 VKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNI 126
++ E R++ D L L+ V + Y LS K F +D + +K DDD V + +
Sbjct: 196 RAIEAEDRKHGDFLRLDHV-EGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATL 254
Query: 127 IHELENKFHYEK-KLYWGFF-DGRARVRRAGKWKEKNWF----LCDRYLPYALGGGYVLS 180
L H +K ++Y G G ++ ++ E ++ ++Y +A G Y +S
Sbjct: 255 GETLVR--HRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAIS 312
Query: 181 HLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHDVRF------DTEFQSRGCN 231
L +IS N H+L Y +EDVS+G W LD+ D R D E++++ N
Sbjct: 313 KDLASYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGN 369
>gnl|CDD|140237 PTZ00210, PTZ00210, UDP-GlcNAc-dependent glycosyltransferase;
Provisional.
Length = 382
Score = 32.6 bits (74), Expect = 0.18
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 69 LKEEIRRYDDILLLNQVPDEYSSLSQK--------------VLHSFKYIYEHF------D 108
LKEE R DI+ L ++ S ++K + Y++ F +
Sbjct: 142 LKEEAARTHDIITLPT--NDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPN 199
Query: 109 FQYLLKCDDDTFVRVPNIIHELENKFHYEKKLYWGFFDGRARVRRAG 155
Y++K DDD F+RVP + +L + LY G ++ R+ R
Sbjct: 200 VSYIVKGDDDIFIRVPKYLADL--RVMPRHGLYMGRYNYYNRIWRRN 244
>gnl|CDD|188948 cd09549, SAM_EPH-A10, SAM domain of EPH-A10 subfamily of tyrosine
kinase receptors. SAM (sterile alpha motif) domain of
EPH-A10 subfamily of receptor tyrosine kinases is a
C-terminal potential protein-protein interaction domain.
This domain is located in the cytoplasmic region of
EPH-A10 receptors and appears to mediate cell-cell
initiated signal transduction. It was found
preferentially expressed in the testis. EphA10 may be
involved in the pathogenesis and development of prostate
carcinoma and lymphocytic leukemia. It is a potential
molecular marker and/or therapy target for these types
of cancers.
Length = 70
Score = 29.8 bits (67), Expect = 0.21
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 203 SVGVWLSALDITRYHD 218
SVG WL ALD+ RY D
Sbjct: 9 SVGEWLEALDLCRYKD 24
>gnl|CDD|213053 cd12092, TM_ErbB4, Transmembrane domain of ErbB4, a Protein
Tyrosine Kinase. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. ErbB4 (HER4) is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor PTKs (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane (TM) helix, and a cytoplasmic region with
a tyr kinase domain and a regulatory C-terminal tail.
It is activated by ligand-induced dimerization, leading
to the phosphorylation of tyr residues in the
C-terminal tail, which serve as binding sites for
downstream signaling molecules. Ligands that bind ErbB4
fall into two groups, the neuregulins (or heregulins)
and some EGFR (HER1, ErbB1) ligands including
betacellulin, HBEGF, and epiregulin. All four
neuregulins (NRG1-4) interact with ErbB4. Upon ligand
binding, ErbB4 forms homo- or heterodimers with other
ErbB proteins. The TM domain not only serves as a
membrane anchor, but also plays an important role in
receptor dimerization and optimal activation. Mutations
in the TM domain of ErbB4 have been associated with
increased breast cancer risk. ErbB4 is essential in
embryonic development. It is implicated in mammary
gland, cardiac, and neural development. As a
postsynaptic receptor of NRG1, ErbB4 plays an important
role in synaptic plasticity and maturation. The
impairment of NRG1/ErbB4 signaling may contribute to
schizophrenia.
Length = 44
Score = 26.7 bits (59), Expect = 1.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 21 FIVILILTSSKNYIRRKNIR 40
FI+++I + YIRRK+I+
Sbjct: 21 FIIVIIALTFAVYIRRKSIK 40
>gnl|CDD|227832 COG5545, COG5545, Predicted P-loop ATPase and inactivated
derivatives [General function prediction only].
Length = 517
Score = 28.0 bits (62), Expect = 5.2
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 37 KNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKV 96
KNI T I+N E+ +K LF + + N V++ ++ DE+ L
Sbjct: 61 KNII-TAIENDER--LKGLFWLNDSSNQVEMARPAKLH--------GSTRDEFVDLDSSE 109
Query: 97 LHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFH 135
L EH +Y +KC DD ++V + N++H
Sbjct: 110 L---AAWLEHDPERYGMKCSDDNVLKVVIAV-ARRNRYH 144
>gnl|CDD|233331 TIGR01255, pyr_form_ly_1, formate acetyltransferase 1. Alternate
names: pyruvate formate-lyase; formate
C-acetyltransferase This enzyme converts formate +
acetyl-CoA into pyruvate + CoA. This model describes
formate acetyltransferase 1. More distantly related
putative formate acetyltransferases have also been
identified, including formate acetyltransferase 2 from
E. coli, which is excluded from this model [Energy
metabolism, Fermentation].
Length = 744
Score = 27.6 bits (61), Expect = 7.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 76 YDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFH 135
D+ VPD + +VL + + E+FD L DT+V NIIH + +K++
Sbjct: 435 VDEKHKDYVVPD-IEPIRDEVL-DYDTVMENFD--KSLDWLADTYVDAMNIIHYMHDKYN 490
Query: 136 YE 137
YE
Sbjct: 491 YE 492
>gnl|CDD|119380 cd06418, GH25_BacA-like, BacA is a bacterial lysin from
Enterococcus faecalis that degrades bacterial cell
walls by catalyzing the hydrolysis of 1,4-beta-linkages
between N-acetylmuramic acid and N-acetyl-D-glucosamine
residues. BacA is homologous to the YbfG and YkuG
lysins of Bacillus subtilis. BacA has a C-terminal
catalytic glycosyl hydrolase family 25 (GH25) domain
and an N-terminal peptidoglycan-binding domain
comprised of three alpha helices which is similar to a
domain found in matrixins.
Length = 212
Score = 26.9 bits (60), Expect = 7.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 4 SANQTGLSKFKNLK-HSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSI 58
+A Q ++ + LK Y IV LT S KN+ T ++ I +K +F I
Sbjct: 17 TATQPTDARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLK-VFPI 71
>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts. Translational
elongation factor Ts (EF-Ts) catalyzes the exchange of
GTP for the GDP of the EF-Tu.GDP complex as part of the
cycle of translation elongation. This protein is found
in Bacteria, mitochondria, and chloroplasts [Protein
synthesis, Translation factors].
Length = 291
Score = 27.0 bits (60), Expect = 9.0
Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 26 ILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRY-DDILLLNQ 84
+ + +I + ++ W+K + G + +++ ++ ++++ +I LL Q
Sbjct: 183 VAANKPQFIDQDDVSQEWVKKERQIITDQAELSGKPKEILEKMVEGRMKKFLAEISLLGQ 242
Query: 85 --VPDEYSSLSQ 94
V D ++ Q
Sbjct: 243 KFVMDPSKTVGQ 254
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.427
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,899,566
Number of extensions: 1266927
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1071
Number of HSP's successfully gapped: 42
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)